Citrus Sinensis ID: 038112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-----
Protein Sequence
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST
Secondary Structure (PSIPRED)
ccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MVISAKRLLNLLKAEKNPHTALALfdsatrepgyahsphLFHHILRRLIDPKLVVHVSRILELIEIqkcycpedVALSVIQAygknsmpdKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWekglkpdvysyGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINglckcgrfdeCLEMWDRMKknerekdsftycSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVmgrkgclnVVSYNILIRGLlengkvdeAISIWELLREkncnadstthGVLINglckngylNKAIQILNEveeggegrlADAASLVNRmdkhgcklnayTCNSLMNGFIQASKLENAIFLFKemsrkgcsptvVSYNTLINGLCKVERFGEAYSFVKEMLekgwkpdmiTYSLLINGLCQSKKIDMALKLCCQFLqkgftpdvtMYNILIHGLCSAGKVEDALQLYSNmkkrncvpnlvtYNTLMDGLFKTGDCDKALEIWNHILEerlrpdiisynitlkglcscsRMSDAFEFLNDALcrgilpttITWHILVRAVMNNGAST
Flexible Loop (DISEMBL)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSlwekglkpdVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIleerlrpdiISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST
Low Complexity Region (SEG)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST
Disordered region (IsUnstruct)
********LNLL******HTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVM******
Disordered Region (DISOPRED)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS*
Disordered Region (DISEMBL)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST
Disordered Region (DISPRO)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNGAST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	625	2.2.26 [Sep-21-2011]
Q9SS81	687	Pentatricopeptide repeat-	yes	no	0.988	0.899	0.549	0.0
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.929	0.770	0.295	1e-79
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.979	0.838	0.275	2e-75
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.771	0.806	0.295	2e-72
Q9CA58	763	Putative pentatricopeptid	no	no	0.948	0.777	0.284	4e-72
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.849	0.710	0.293	3e-71
O49436	660	Pentatricopeptide repeat-	no	no	0.764	0.724	0.301	6e-69
Q9M302	659	Pentatricopeptide repeat-	no	no	0.926	0.878	0.271	5e-68
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.744	0.739	0.311	6e-68
Q76C99	791	Protein Rf1, mitochondria	N/A	no	0.817	0.646	0.300	1e-67

>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/679 (54%), Positives = 473/679 (69%), Gaps = 61/679 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S K +L LLK+EKNP  A ALFDSATR PGYAHS  ++HHILRRL + ++V HVSRI+E
Sbjct: 8   LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  Q+C C EDVALSVI+ YGKNSMPD+ALDVF+RM EIFGCE  I             
Sbjct: 68  LIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           C+K++FEKA+ FL+ +W++G KPDV+SY
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVIN L K+G L  AL +FDEM ERGV  +V CYNILIDGF K+ D+  A E+W+RL+ 
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           ++SVYPNV T+N+MI+GL KCGR D+CL++W+RMK+NEREKD +TY S IHGLC AGNV+
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
            AE V+ E+ E    +D VTYN M+ GFCR GKIKE  ELW +M  K  +N+VSYNILI+
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIK 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG--- 375
           GLLENGK+DEA  IW L+  K   AD TT+G+ I+GLC NGY+NKA+ ++ EVE  G   
Sbjct: 368 GLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHL 427

Query: 376 --------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         + RL +A++LV  M KHG +LN++ CN+L+ G I+ S+L  A F  
Sbjct: 428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFL 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           +EM + GC PTVVSYN LI GLCK  +FGEA +FVKEMLE GWKPD+ TYS+L+ GLC+ 
Sbjct: 488 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRD 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           +KID+AL+L  QFLQ G   DV M+NILIHGLCS GK++DA+ + +NM+ RNC  NLVTY
Sbjct: 548 RKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTY 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G FK GD ++A  IW ++ +  L+PDIISYN  +KGLC C  +S A EF +DA  
Sbjct: 608 NTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARN 667

Query: 602 RGILPTTITWHILVRAVMN 620
            GI PT  TW+ILVRAV+N
Sbjct: 668 HGIFPTVYTWNILVRAVVN 686

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 197/666 (29%), Positives = 317/666 (47%), Gaps = 85/666 (12%)

Query: 4   SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILEL 63
           +A RL NL                 +++P ++  P L+  IL RL        + +ILE 
Sbjct: 65  AALRLFNLA----------------SKKPNFSPEPALYEEILLRLGRSGSFDDMKKILED 108

Query: 64  IEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA---------------- 107
           ++  +C       L +I++Y +  + D+ L V   M + FG +                 
Sbjct: 109 MKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGN 168

Query: 108 ---------------GI-------------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYG 139
                          GI             LCR  Q   A   L  +   GL PD  ++ 
Sbjct: 169 SLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFT 228

Query: 140 TVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199
           TV+ G ++ GDL GAL + ++M E G   + V  N+++ GF K+G    A    + +  +
Sbjct: 229 TVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ 288

Query: 200 TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG 259
              +P+  T+N ++NGLCK G     +E+ D M +   + D +TY S I GLCK G V+ 
Sbjct: 289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348

Query: 260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIR 318
           A  V  +M+      + VTYN +I   C+  +++E  EL  V+  KG L +V ++N LI+
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378
           GL        A+ ++E +R K C  D  T+ +LI+ LC  G L++A+ +L +        
Sbjct: 409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ-------- 460

Query: 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT 438
                     M+  GC  +  T N+L++GF +A+K   A  +F EM   G S   V+YNT
Sbjct: 461 ----------MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKG 498
           LI+GLCK  R  +A   + +M+ +G KPD  TY+ L+   C+   I  A  +       G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query: 499 FTPDVTMYNILIHGLCSAGKVEDALQLYSN--MKKRNCVPNLVTYNTLMDGLFKTGDCDK 556
             PD+  Y  LI GLC AG+VE A +L  +  MK  N  P+   YN ++ GLF+     +
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTE 628

Query: 557 ALEIWNHILEE-RLRPDIISYNITLKGLCS-CSRMSDAFEFLNDALCRGILPTTITWHIL 614
           A+ ++  +LE+    PD +SY I  +GLC+    + +A +FL + L +G +P   + ++L
Sbjct: 629 AINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYML 688

Query: 615 VRAVMN 620
              ++ 
Sbjct: 689 AEGLLT 694

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  284 bits (726), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/645 (27%), Positives = 321/645 (49%), Gaps = 33/645 (5%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           I+  +L  LL+   N  T++ LF     + GY HS  ++  ++ +L        + R+L 
Sbjct: 76  ITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLI 135

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG---------ILCRK 113
            ++ +     E + +S+++ Y K   P +   +   M  ++ CE           IL   
Sbjct: 136 QMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSG 195

Query: 114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173
              + A      +  + + P ++++G V+       ++  AL++  +M + G   N V Y
Sbjct: 196 NCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIY 255

Query: 174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
             LI    K      A ++ E + +   V P+  T+N +I GLCK  R +E  +M +RM 
Sbjct: 256 QTLIHSLSKCNRVNEALQLLEEMFLMGCV-PDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK 293
                 D  TY   ++GLCK G V+ A+ ++  + +  I    V +N +I GF   G++ 
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNTLIHGFVTHGRLD 370

Query: 294 ECFE-LWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
           +    L +++   G + +V +YN LI G  + G V  A+ +   +R K C  +  ++ +L
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 352 INGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGC 394
           ++G CK G +++A  +LNE+   G                 E R+ +A  +   M + GC
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYS 454
           K + YT NSL++G  +  ++++A++L ++M  +G     V+YNTLIN   +     EA  
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550

Query: 455 FVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
            V EM+ +G   D ITY+ LI GLC++ ++D A  L  + L+ G  P     NILI+GLC
Sbjct: 551 LVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610

Query: 515 SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII 574
            +G VE+A++    M  R   P++VT+N+L++GL + G  +  L ++  +  E + PD +
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVM 619
           ++N  +  LC    + DA   L++ +  G +P   TW IL+++++
Sbjct: 671 TFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSII 715

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  273 bits (699), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/505 (29%), Positives = 262/505 (51%), Gaps = 23/505 (4%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
           + R  + E+  +FL ++   G  PD+    T+I G  + G    A  + + +   G   +
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
           V+ YN++I G+ K G+   A  + +R+    SV P+VVTYN ++  LC  G+  + +E+ 
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM----SVSPDVVTYNTILRSLCDSGKLKQAMEVL 227

Query: 230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
           DRM + +   D  TY   I   C+   V  A ++  EM + G   D VTYN +++G C+ 
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287

Query: 290 GKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
           G++ E  +    M   GC  NV+++NI++R +   G+  +A  +   +  K  +    T 
Sbjct: 288 GRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347

Query: 349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF 408
            +LIN LC+ G L +AI IL                   +M +HGC+ N+ + N L++GF
Sbjct: 348 NILINFLCRKGLLGRAIDILE------------------KMPQHGCQPNSLSYNPLLHGF 389

Query: 409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM 468
            +  K++ AI   + M  +GC P +V+YNT++  LCK  +  +A   + ++  KG  P +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVL 449

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN 528
           ITY+ +I+GL ++ K   A+KL  +   K   PD   Y+ L+ GL   GKV++A++ +  
Sbjct: 450 ITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHE 509

Query: 529 MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
            ++    PN VT+N++M GL K+   D+A++    ++    +P+  SY I ++GL     
Sbjct: 510 FERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGM 569

Query: 589 MSDAFEFLNDALCRGILPTTITWHI 613
             +A E LN+   +G++  +    +
Sbjct: 570 AKEALELLNELCNKGLMKKSSAEQV 594

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1

 Score =  273 bits (697), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 178/625 (28%), Positives = 306/625 (48%), Gaps = 32/625 (5%)

Query: 5   AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRL-IDPKLVVHVSRILEL 63
            K +  ++K +K+P  AL +F+S  +E G+ H+   +  ++ +L    K       ++++
Sbjct: 7   PKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66

Query: 64  IEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA---------GILCRKR 114
            E    +  E V +  ++ YG+     +A++VF+RM + + CE           +L    
Sbjct: 67  RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSG 125

Query: 115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN 174
            F++A +    + ++G+ PDVYS+   +    K+     AL + + M  +G E NVV Y 
Sbjct: 126 YFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYC 185

Query: 175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK 234
            ++ GF+++       E++ ++ + + V   + T+N ++  LCK G   EC ++ D++ K
Sbjct: 186 TVVGGFYEENFKAEGYELFGKM-LASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK 244

Query: 235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
                + FTY  FI GLC+ G ++GA R+   ++E G   D +TYN +I G C+  K +E
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 295 CFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN 353
                  M  +G   +  +YN LI G  + G V  A  I           D  T+  LI+
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364

Query: 354 GLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK 413
           GLC  G  N+A+ + NE                      G K N    N+L+ G      
Sbjct: 365 GLCHEGETNRALALFNEAL------------------GKGIKPNVILYNTLIKGLSNQGM 406

Query: 414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL 473
           +  A  L  EMS KG  P V ++N L+NGLCK+    +A   VK M+ KG+ PD+ T+++
Sbjct: 407 ILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNI 466

Query: 474 LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN 533
           LI+G     K++ AL++    L  G  PDV  YN L++GLC   K ED ++ Y  M ++ 
Sbjct: 467 LIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKG 526

Query: 534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAF 593
           C PNL T+N L++ L +    D+AL +   +  + + PD +++   + G C    +  A+
Sbjct: 527 CAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAY 586

Query: 594 E-FLNDALCRGILPTTITWHILVRA 617
             F        +  +T T++I++ A
Sbjct: 587 TLFRKMEEAYKVSSSTPTYNIIIHA 611

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 171/583 (29%), Positives = 286/583 (49%), Gaps = 52/583 (8%)

Query: 69  CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC----------RKRQFEK 118
           CY    V   V+++Y + S+ DKAL +   + +  G   G+L            KR    
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
           A+     + E  + P+V++Y  +I G   +G++  AL +FD+M  +G   NVV YN LID
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 179 GFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238
           G+ K        ++   + ++  + PN+++YNV+INGLC+ GR  E   +   M +    
Sbjct: 249 GYCKLRKIDDGFKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query: 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298
            D  TY + I G CK GN   A  ++ EM+  G+    +TY ++I   C+AG +    E 
Sbjct: 308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query: 299 WEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS---TTHGVLING 354
            + M  +G C N  +Y  L+ G  + G ++EA   + +LRE N N  S    T+  LING
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA---YRVLREMNDNGFSPSVVTYNALING 424

Query: 355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
            C  G +  AI +L +++E                   G   +  + +++++GF ++  +
Sbjct: 425 HCVTGKMEDAIAVLEDMKE------------------KGLSPDVVSYSTVLSGFCRSYDV 466

Query: 415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
           + A+ + +EM  KG  P  ++Y++LI G C+  R  EA    +EML  G  PD  TY+ L
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526

Query: 475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
           IN  C    ++ AL+L  + ++KG  PDV  Y++LI+GL    +  +A +L   +     
Sbjct: 527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586

Query: 535 VPNLVTYNTLMD---------------GLFKTGDCDKALEIWNHILEERLRPDIISYNIT 579
           VP+ VTY+TL++               G    G   +A +++  +L +  +PD  +YNI 
Sbjct: 587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646

Query: 580 LKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
           + G C    +  A+    + +  G L  T+T   LV+A+   G
Sbjct: 647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689

Arabidopsis thaliana (taxid: 3702)

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score =  262 bits (670), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 168/558 (30%), Positives = 280/558 (50%), Gaps = 80/558 (14%)

Query: 57  VSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF 116
           V ++L  I ++     E   + V +AYGK  +PDKA+D+F RM + F C           
Sbjct: 96  VEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRC----------- 144

Query: 117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL 176
                          K  V S+ +V+N ++  G           ++ RG+E         
Sbjct: 145 ---------------KRSVKSFNSVLNVIINEG-----------LYHRGLE--------- 169

Query: 177 IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE 236
              F+   DY+          M  ++ PN +++N++I  LCK    D  +E++  M + +
Sbjct: 170 ---FY---DYVVNSN------MNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK 217

Query: 237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECF 296
              D +TYC+ + GLCK   ++ A  +  EM   G     V YN +IDG C+ G +    
Sbjct: 218 CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVT 277

Query: 297 ELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGL 355
           +L + M  KGC+ N V+YN LI GL   GK+D+A+S+ E +    C  +  T+G LINGL
Sbjct: 278 KLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGL 337

Query: 356 CKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLE 415
            K                  + R  DA  L++ M++ G  LN +  + L++G  +  K E
Sbjct: 338 VK------------------QRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379

Query: 416 NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI 475
            A+ L+++M+ KGC P +V Y+ L++GLC+  +  EA   +  M+  G  P+  TYS L+
Sbjct: 380 EAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439

Query: 476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV 535
            G  ++   + A+++  +  + G + +   Y++LI GLC  G+V++A+ ++S M      
Sbjct: 440 KGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIK 499

Query: 536 PNLVTYNTLMDGLFKTGDCDKALEIWNHIL---EERLRPDIISYNITLKGLCSCSRMSDA 592
           P+ V Y++++ GL   G  D AL++++ +L   E + +PD+++YNI L GLC    +S A
Sbjct: 500 PDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRA 559

Query: 593 FEFLNDALCRGILPTTIT 610
            + LN  L RG  P  IT
Sbjct: 560 VDLLNSMLDRGCDPDVIT 577

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1

 Score =  259 bits (662), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 168/618 (27%), Positives = 297/618 (48%), Gaps = 39/618 (6%)

Query: 12  LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC 71
           L+ E     AL  F S      + H+P  F  ++R+L     V  V  +L+ +++Q  +C
Sbjct: 50  LRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHC 109

Query: 72  PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRF 122
            ED+ +SVI  Y +  + ++A+++F R+ E FGC+  +         L  + + +     
Sbjct: 110 SEDLFISVISVYRQVGLAERAVEMFYRIKE-FGCDPSVKIYNHVLDTLLGENRIQMIYMV 168

Query: 123 LNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182
              +   G +P+V++Y  ++  L K+  + GA  +  EM  +G   + V Y  +I    +
Sbjct: 169 YRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCE 228

Query: 183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF 242
            G     +E+ ER        P V  YN +INGLCK   +    E+   M +     +  
Sbjct: 229 VGLVKEGRELAERF------EPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282

Query: 243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM 302
           +Y + I+ LC +G +E A     +M++ G   +  T ++++ G    G   +  +LW  M
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQM 342

Query: 303 GRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGY 360
            R   L  NVV+YN L++G   +G + +A+S++  + E  C+ +  T+G LING  K G 
Sbjct: 343 IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGS 402

Query: 361 LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420
           L+ A+ I N                  +M   GC  N     +++    + SK + A  L
Sbjct: 403 LDGAVYIWN------------------KMLTSGCCPNVVVYTNMVEALCRHSKFKEAESL 444

Query: 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-KPDMITYSLLINGLC 479
            + MS++ C+P+V ++N  I GLC   R   A    ++M ++    P+++TY+ L++GL 
Sbjct: 445 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLA 504

Query: 480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV 539
           ++ +I+ A  L  +   +G     + YN L+HG C+AG    ALQL   M      P+ +
Sbjct: 505 KANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEI 564

Query: 540 TYNTLMDGLFKTGDCDKALEIWNHIL--EERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
           T N ++    K G  ++A ++ + +     + RPD+ISY   + GLC  +   D    L 
Sbjct: 565 TMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLE 624

Query: 598 DALCRGILPTTITWHILV 615
             +  GI+P+  TW +L+
Sbjct: 625 RMISAGIVPSIATWSVLI 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  259 bits (661), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 253/495 (51%), Gaps = 30/495 (6%)

Query: 134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW 193
           D+YSY  +IN   +   L  ALAV  +M + G E ++V  + L++G      Y   K I 
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG------YCHGKRIS 167

Query: 194 ERLVMETSVY-----PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
           E + +   ++     PN VT+N +I+GL    +  E + + DRM     + D FTY + +
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227

Query: 249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL 308
           +GLCK G+++ A  + ++M +  I  D V Y  +ID  C    + +   L+  M  KG  
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287

Query: 309 -NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
            NVV+YN LIR L   G+  +A  +   + E+  N +  T   LI+   K          
Sbjct: 288 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVK---------- 337

Query: 368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427
                   EG+L +A  L + M K     + +T +SL+NGF    +L+ A  +F+ M  K
Sbjct: 338 --------EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389

Query: 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA 487
            C P VV+YNTLI G CK +R  E     +EM ++G   + +TY+ LI GL Q+   DMA
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449

Query: 488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG 547
            K+  + +  G  PD+  Y+IL+ GLC  GK+E AL ++  ++K    P++ TYN +++G
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 548 LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT 607
           + K G  +   +++  +  + ++P++I Y   + G C      +A     +    G LP 
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569

Query: 608 TITWHILVRAVMNNG 622
           + T++ L+RA + +G
Sbjct: 570 SGTYNTLIRARLRDG 584

Arabidopsis thaliana (taxid: 3702)

>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1

 Score =  258 bits (659), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/545 (30%), Positives = 273/545 (50%), Gaps = 34/545 (6%)

Query: 92  ALD-VFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEK---GLKPDVYSY 138
           A+D V +RM E+ GC   +         LC + + ++A   L+ + +    G  PDV SY
Sbjct: 141 AMDIVLRRMTEL-GCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVING  K GD   A + + EM +RG+  +VV YN +I    K     +A E+   +V 
Sbjct: 200 TTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMV- 258

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           +  V P+ +TYN +++G C  G+  E +    +M+ +  E D  TY   +  LCK G   
Sbjct: 259 KNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCM 318

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILI 317
            A +++  M + G+  +  TY  ++ G+   G + E   L ++M R G   +   ++ILI
Sbjct: 319 EARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILI 378

Query: 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEG 377
               + GKVD+A+ ++  +R++  N ++ T+G +I  LCK+G                  
Sbjct: 379 CAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG------------------ 420

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN 437
           R+ DA     +M   G        NSL++G    +K E A  L  EM  +G     + +N
Sbjct: 421 RVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFN 480

Query: 438 TLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
           ++I+  CK  R  E+    + M+  G KP++ITY+ LING C + K+D A+KL    +  
Sbjct: 481 SIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSV 540

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA 557
           G  P+   Y+ LI+G C   ++EDAL L+  M+     P+++TYN ++ GLF+T     A
Sbjct: 541 GLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAA 600

Query: 558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
            E++  I E   + ++ +YNI L GLC      DA +   +     +     T++I++ A
Sbjct: 601 KELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDA 660

Query: 618 VMNNG 622
           ++  G
Sbjct: 661 LLKVG 665

Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	625
225434476	691	PREDICTED: pentatricopeptide repeat-cont	0.996	0.901	0.618	0.0
224139020	694	predicted protein [Populus trichocarpa]	0.992	0.893	0.625	0.0
255586501	701	pentatricopeptide repeat-containing prot	0.976	0.870	0.629	0.0
147833070	913	hypothetical protein VITISV_034996 [Viti	0.947	0.648	0.588	0.0
297745840	650	unnamed protein product [Vitis vinifera]	0.902	0.867	0.608	0.0
449460383	701	PREDICTED: pentatricopeptide repeat-cont	0.992	0.884	0.562	0.0
15232008	687	pentatricopeptide repeat-containing prot	0.988	0.899	0.549	0.0
297833654	689	pentatricopeptide repeat-containing prot	0.988	0.896	0.544	0.0
356520989	682	PREDICTED: pentatricopeptide repeat-cont	0.974	0.892	0.538	0.0
125528410	703	hypothetical protein OsI_04465 [Oryza sa	0.984	0.874	0.421	1e-157

>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060 [Vitis vinifera]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/684 (61%), Positives = 518/684 (75%), Gaps = 61/684 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S KR++ LLK+EKNPH+AL++FDS TR PGY+H+P++FHHIL+RL DPKLV HVSRI+E
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  QKC CPEDVAL+VI+AY KNSMPD+ALD+FQRM+EIFGC+ GI             
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           CRK+QF+KAK  LN +WE+G  PDV+SY
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
           GT+IN L K+G +  AL +FDEM ERGV  +V CYNILIDGFFKKGD + A EIWERL+ 
Sbjct: 188 GTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
             SVYPN+ +YNVMINGLCKCG+FDE  E+W RMKKNER +D +TY + IHGLC +GN++
Sbjct: 248 GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
           GA RVY+EM E+G+  D V YN M++G+ RAG+I+EC ELW+VM ++GC  VVSYNILIR
Sbjct: 308 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---- 374
           GL EN KVDEAISIWELL EK+C ADS T+GVL++GLCKNGYLNKA+ IL E E G    
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL 427

Query: 375 -------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         EGRL + A ++++M KHGCK N + CN+++NGF++ASKLE+A+  F
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
             M  KGC PTVV+YNTLINGL K ERF EAY+ VKEML KGWKP+MITYSLL+NGLCQ 
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQG 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           KK+DMAL L CQ L+KGF PDV M+NI+IHGLCS+GKVEDALQLYS MK+R CVPNLVT+
Sbjct: 548 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G +K  D ++A +IW+HIL+   +PDIISYNITLKGLCSC R+SDA  FLNDA+ 
Sbjct: 608 NTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 667

Query: 602 RGILPTTITWHILVRAVMNNGAST 625
           RG+LPT ITW+ILVRAV++NGA T
Sbjct: 668 RGVLPTAITWNILVRAVLDNGALT 691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa] gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/681 (62%), Positives = 514/681 (75%), Gaps = 61/681 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +SA++L  LLKAEK+P +ALALFDSA+R+PGY HSPH+F  ILRRL DPKLVVHV+RI+E
Sbjct: 8   LSARQLFKLLKAEKSPKSALALFDSASRQPGYTHSPHIFLLILRRLSDPKLVVHVTRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI+ QKC C EDV L+V++AY K+ MP++ALD FQ+M EIFGC+ GI             
Sbjct: 68  LIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEA 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                            +KRQF +AK  L+ +W K LKPDVYSY
Sbjct: 128 NLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
           GTVING+VKSGDL+ AL VFDEMFERG+  +V+CYNI+IDGFFK+GDY++ KEIWERLV 
Sbjct: 188 GTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWERLVK 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
            + VYPNVVTYNVMINGLCK GRFDE LEMW+RMKKNE E D FTY S I GLC  GNV+
Sbjct: 248 GSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
           GA  VY+EMV+  + VD VTYNA+++GFCRAGKIKE FELW +MG++ C NVVSYNI IR
Sbjct: 308 GAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVVSYNIFIR 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG--- 375
           GL EN KV+EAIS+WELLR +   ADSTT+GVLI+GLCKNG+LNKA++IL E ++GG   
Sbjct: 368 GLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKL 427

Query: 376 --------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         +GR+ +A  +V++MDK+GC+L+ + CN L+NGF++ASKLE AI  F
Sbjct: 428 DAFAYSSIVDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFF 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           +EM  KGCSPTVVSYNTLINGLCK ERF +AYSFVKEMLEK WKPDMITYSLL++GLCQ 
Sbjct: 488 REMETKGCSPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQG 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           KKIDMAL L  Q L KG  PDVTM+NIL+HGLCSAGK+EDAL LYSNMK+ NC+PNLVT+
Sbjct: 548 KKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTH 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLMDGL+K  +C+ A  IW  + +   +PDIISYNITLKGLCSC R+SD     +DAL 
Sbjct: 608 NTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALK 667

Query: 602 RGILPTTITWHILVRAVMNNG 622
            GILPT+ITW+ILVRAV+  G
Sbjct: 668 NGILPTSITWYILVRAVLKLG 688

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/674 (62%), Positives = 508/674 (75%), Gaps = 64/674 (9%)

Query: 14  AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLI-DPKLVVHVSRILELIEIQKCYCP 72
           AEKNP +AL+LF+SA+R    +HS H+FHHILRRL  D +LV HVSRI+++++ QKC C 
Sbjct: 22  AEKNPLSALSLFESASRNK--SHSAHVFHHILRRLAADSRLVSHVSRIVDIVKAQKCPCK 79

Query: 73  EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG------------------------ 108
           EDVAL+VI+AY KN M +KALD FQ M +IFGC+ G                        
Sbjct: 80  EDVALTVIKAYAKNKMSNKALDTFQNMQDIFGCKPGVRSYNTLLNAFVELNEWDRAESFS 139

Query: 109 --------------------ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKS 148
                               I C+K+Q EKA   L+ +W + LKPDV+SYGT+ING+VK 
Sbjct: 140 RYFESMDVSPNLQTYNILIKISCKKQQIEKAISLLDWMWSQNLKPDVFSYGTLINGMVKV 199

Query: 149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT 208
           GDLLGAL VFDEM  RGV  +V CYN+LIDGFFK GDY + KEIWERLV + SVYPNVVT
Sbjct: 200 GDLLGALKVFDEMSVRGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVT 259

Query: 209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV 268
           YN+MINGLCKCGRFDE LE+W+RM KNEREKD FTY S IHGLC+AGN++GA RVY+E+V
Sbjct: 260 YNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRVYKEIV 319

Query: 269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE 328
           ES + VDAVT+NAM++GFCRAGKIKE FELW VMG++ C  VVSYNILI+GL ENGKV+E
Sbjct: 320 ESSLVVDAVTHNAMLNGFCRAGKIKESFELWMVMGKENCQTVVSYNILIKGLFENGKVEE 379

Query: 329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG------------- 375
           AISIWELL +K C  +STT+GVLI+GLCKNG LNKA++I  E E+G              
Sbjct: 380 AISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAEDGPGKLDAYAYSSMVD 439

Query: 376 ----EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP 431
               EGR+ +A S+VN+MDK G KL+ + CN L+NGF++ASKLE+AI  F+EM  KGCSP
Sbjct: 440 GLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFFREMECKGCSP 499

Query: 432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC 491
           T+VSYNTLI GLCK ERF EAYSFVKEMLEK WKPDMIT SLL++GLCQ KKI+MAL L 
Sbjct: 500 TIVSYNTLIKGLCKAERFSEAYSFVKEMLEKEWKPDMITCSLLMDGLCQEKKIEMALNLW 559

Query: 492 CQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT 551
            Q L KGF PD+TMYNIL+HGLCS  K+EDALQLYS+MK+  CVPNLVT NTLM+GL+K 
Sbjct: 560 QQALDKGFKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKV 619

Query: 552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITW 611
            D +KA EIW+ IL++ L PDIISYNIT+KGLCSCSR+SDA EFLNDAL RGILPT +TW
Sbjct: 620 RDYEKASEIWDCILKDGLHPDIISYNITIKGLCSCSRISDAIEFLNDALNRGILPTAVTW 679

Query: 612 HILVRAVMNNGAST 625
           +ILVRA +N   S+
Sbjct: 680 NILVRAAVNFRTSS 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]

 Score =  831 bits (2146), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/678 (58%), Positives = 491/678 (72%), Gaps = 86/678 (12%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S KR++ LLK+EKNPH+AL++FDS TR PGY+H+P++FHHIL+RL DPKLV H      
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAH------ 61

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
                              AY KNSMPD+ALD+FQRM+EIFGC+ GI             
Sbjct: 62  -------------------AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 102

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           CRK+QF+KAK  LN +W +G  PDV+SY
Sbjct: 103 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSY 162

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
           GT+IN L K+G +  AL +FDEM ERGV  +V CYNILIDGFFKKGD + A EIWERL+ 
Sbjct: 163 GTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK 222

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
             SVYPN+ +YNVMINGLCKCG+FDE  E+W RMKKNER +D +TY + IHGLC +GN++
Sbjct: 223 GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 282

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
           GA RVY+EM E+G+  D V YN M++G+ RAG+I+EC ELW+VM ++GC  VVSYNILIR
Sbjct: 283 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 342

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---- 374
           GL EN KVDEAISIWELL EK+C ADS T+GVL++GLCKNGYLNKA+ IL E E G    
Sbjct: 343 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL 402

Query: 375 -------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         EGRL + A ++++M KHGCK N Y CN+++NGF++ASKLE+A+  F
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFF 462

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
             M  KGC PTVV+YNTLINGL K ERF EAY+ VKEML+KGWKP+MITYSLL+NGLCQ 
Sbjct: 463 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQG 522

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           KK+DMAL L CQ L+KGF PDV M+NI+IHGLCS+GKVEDALQLYS MK+RNCVPNLVT+
Sbjct: 523 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTH 582

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G +K  D ++A +IW+HIL+  L+PDIISYNITLKGLCSC R+SDA  FLNDA+ 
Sbjct: 583 NTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 642

Query: 602 RGILPTTITWHILVRAVM 619
           RG+LPT ITW+ILV+  +
Sbjct: 643 RGVLPTAITWNILVQGYL 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/625 (60%), Positives = 468/625 (74%), Gaps = 61/625 (9%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S KR++ LLK+EKNPH+AL++FDS TR PGY+H+P++FHHIL+RL DPKLV HVSRI+E
Sbjct: 8   LSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPYVFHHILKRLFDPKLVAHVSRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  QKC CPEDVAL+VI+AY KNSMPD+ALD+FQRM+EIFGC+ GI             
Sbjct: 68  LIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIES 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           CRK+QF+KAK  LN +WE+G  PDV+SY
Sbjct: 128 NKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
           GT+IN L K+G +  AL +FDEM ERGV  +V CYNILIDGFFKKGD + A EIWERL+ 
Sbjct: 188 GTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLK 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
             SVYPN+ +YNVMINGLCKCG+FDE  E+W RMKKNER +D +TY + IHGLC +GN++
Sbjct: 248 GPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
           GA RVY+EM E+G+  D V YN M++G+ RAG+I+EC ELW+VM ++GC  VVSYNILIR
Sbjct: 308 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIR 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---- 374
           GL EN KVDEAISIWELL EK+C ADS T+GVL++GLCKNGYLNKA+ IL E E G    
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDL 427

Query: 375 -------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         EGRL + A ++++M KHGCK N + CN+++NGF++ASKLE+A+  F
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
             M  KGC PTVV+YNTLINGL K ERF EAY+ VKEML KGWKP+MITYSLL+NGLCQ 
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQG 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           KK+DMAL L CQ L+KGF PDV M+NI+IHGLCS+GKVEDALQLYS MK+R CVPNLVT+
Sbjct: 548 KKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTH 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILE 566
           NTLM+G +K  D ++A +IW+HIL+
Sbjct: 608 NTLMEGFYKVRDFERASKIWDHILQ 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis sativus] gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis sativus]

 Score =  786 bits (2030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/681 (56%), Positives = 493/681 (72%), Gaps = 61/681 (8%)

Query: 2   VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRIL 61
           VIS   +L LLKAEKNP+ ALA+FDSA + PGYAH P +FHHILRRL+DPKLVVHV RI+
Sbjct: 7   VISPTLVLKLLKAEKNPNAALAIFDSACQHPGYAHPPFVFHHILRRLMDPKLVVHVGRIV 66

Query: 62  ELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL----------- 110
           +L+  Q+C C EDVALS I+AY K SMPD+AL++FQ M +IFGC  GI            
Sbjct: 67  DLMRAQRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIE 126

Query: 111 ---------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYS 137
                                            C+KRQFEK K  L  ++E GL PD+ S
Sbjct: 127 SNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILS 186

Query: 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLV 197
           YGT+IN L KSG+LL A+ +FDEM  RGV  +V+CYNILIDGF +KGD+++A EIW+RL+
Sbjct: 187 YGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLL 246

Query: 198 METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNV 257
            E+SVYP+V TYN+MINGLCK G+ DE +EMW+RMKKNE+  D FT+ S IHGL KAGN 
Sbjct: 247 TESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNF 306

Query: 258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317
             AE+V++EM+ESG+  D  TYNAM+ G  R GK+ +CFELW VM +  C N+VSYN+LI
Sbjct: 307 NAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLI 366

Query: 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-- 375
           +GLL+N KV++AI  W+LL E+   ADSTT+G+LINGLCKNGYLNKA++IL E E  G  
Sbjct: 367 QGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGAD 426

Query: 376 ---------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL 420
                          +G L  A  L+++M K+  KLN++  NSL+NG+++A KLE AI +
Sbjct: 427 LDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISV 486

Query: 421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480
            +EM  K C+PTVVSYNT+INGLCK ERF +AY  +KEMLE+G KPDMITYSLLI+GLC+
Sbjct: 487 LREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCR 546

Query: 481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT 540
            +K+DMAL L  Q + K   PD+ M+NI+IHGLC+A KV+ AL++++ M++ NCVP+LVT
Sbjct: 547 GEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVT 606

Query: 541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600
           +NT+M+GL+K GDC +AL+IW+ ILE  L+PDIISYNIT KGLCSC+R+SDA EFL DAL
Sbjct: 607 HNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDAL 666

Query: 601 CRGILPTTITWHILVRAVMNN 621
            RGILP   TW++LVRAV+++
Sbjct: 667 DRGILPNAPTWNVLVRAVVDD 687

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana] gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/679 (54%), Positives = 473/679 (69%), Gaps = 61/679 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S K +L LLK+EKNP  A ALFDSATR PGYAHS  ++HHILRRL + ++V HVSRI+E
Sbjct: 8   LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  Q+C C EDVALSVI+ YGKNSMPD+ALDVF+RM EIFGCE  I             
Sbjct: 68  LIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           C+K++FEKA+ FL+ +W++G KPDV+SY
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVIN L K+G L  AL +FDEM ERGV  +V CYNILIDGF K+ D+  A E+W+RL+ 
Sbjct: 188 STVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLE 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           ++SVYPNV T+N+MI+GL KCGR D+CL++W+RMK+NEREKD +TY S IHGLC AGNV+
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
            AE V+ E+ E    +D VTYN M+ GFCR GKIKE  ELW +M  K  +N+VSYNILI+
Sbjct: 308 KAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSVNIVSYNILIK 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG--- 375
           GLLENGK+DEA  IW L+  K   AD TT+G+ I+GLC NGY+NKA+ ++ EVE  G   
Sbjct: 368 GLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHL 427

Query: 376 --------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         + RL +A++LV  M KHG +LN++ CN+L+ G I+ S+L  A F  
Sbjct: 428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFL 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           +EM + GC PTVVSYN LI GLCK  +FGEA +FVKEMLE GWKPD+ TYS+L+ GLC+ 
Sbjct: 488 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRD 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           +KID+AL+L  QFLQ G   DV M+NILIHGLCS GK++DA+ + +NM+ RNC  NLVTY
Sbjct: 548 RKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTY 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G FK GD ++A  IW ++ +  L+PDIISYN  +KGLC C  +S A EF +DA  
Sbjct: 608 NTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARN 667

Query: 602 RGILPTTITWHILVRAVMN 620
            GI PT  TW+ILVRAV+N
Sbjct: 668 HGIFPTVYTWNILVRAVVN 686

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/679 (54%), Positives = 475/679 (69%), Gaps = 61/679 (8%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
           +S K +L LLK+EKNP  A ALFDSATR PGYAHS  ++HHILRRL + ++V HV RI+E
Sbjct: 8   LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSEARMVTHVGRIVE 67

Query: 63  LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL------------ 110
           LI  Q+C C EDVALSVI+ YGKNSMPD+ALDVF+RM EIFGCE GI             
Sbjct: 68  LIRSQECKCDEDVALSVIKTYGKNSMPDRALDVFKRMREIFGCEPGIRSYNTLLNAFVEA 127

Query: 111 --------------------------------CRKRQFEKAKRFLNSLWEKGLKPDVYSY 138
                                           C+K++FEKA+ FLN +W++G KPDV+SY
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLNWMWKEGFKPDVFSY 187

Query: 139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM 198
            TVIN L K+G L  AL +FDEM ER V  +V CYNILIDGF K+ D+  A ++W++L+ 
Sbjct: 188 STVINDLAKTGKLDDALELFDEMSERRVAPDVTCYNILIDGFLKEKDHKMAMQLWDKLLE 247

Query: 199 ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVE 258
           ++SVYPNV T+N+MI+GL KCGR D+CL++WDRMK+NEREKD +TY S IHGLC  GNV+
Sbjct: 248 DSSVYPNVKTHNIMISGLSKCGRVDDCLKIWDRMKQNEREKDLYTYSSLIHGLCDEGNVD 307

Query: 259 GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
            AE V+ E+VE   F+D VTYN M+ GFCR GKIKE  ELW +M ++  +N+VSYNILI+
Sbjct: 308 KAESVFNELVERKAFIDVVTYNTMLGGFCRCGKIKESLELWRIMEQRNSVNIVSYNILIK 367

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG--- 375
           GLLENGK+DEA  IW L+  K   AD+TT+G+ I+GLC NGY+NKA+ ++ EVE  G   
Sbjct: 368 GLLENGKIDEATMIWRLMPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHL 427

Query: 376 --------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF 421
                         + RL +A++LV  M KHG +LN++ CN+L+ G I+ S+L +A  L 
Sbjct: 428 DVYAYASIIDCLCKKRRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLSDASLLM 487

Query: 422 KEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS 481
           + M + GC PTVVSYN LI GLC+  +FGEA +FVKEMLE G KPD+ TYS+L+ GLC+ 
Sbjct: 488 RGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRD 547

Query: 482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY 541
           +KI++AL+L  QFLQ G  PDV M+NILIHGLCS GK++DA+ + +NM+ RNC  NLVTY
Sbjct: 548 RKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTY 607

Query: 542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC 601
           NTLM+G FK  D ++A  IW ++ +  L+PDIISYN  LKGLC C R+S A EF +DA  
Sbjct: 608 NTLMEGYFKVRDSNRATVIWGYMYKMGLQPDIISYNTILKGLCLCHRVSYAIEFFDDARN 667

Query: 602 RGILPTTITWHILVRAVMN 620
            GI PT  TW+ILVRAV+N
Sbjct: 668 HGIFPTVYTWNILVRAVVN 686

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Glycine max]

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/682 (53%), Positives = 477/682 (69%), Gaps = 73/682 (10%)

Query: 3   ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLI-DPKLVV-HVSRI 60
           +S  RLL LLKAEK+P +AL +FD+A R PG++ S  +FHHILRR+  DP L++ H  RI
Sbjct: 8   LSPHRLLKLLKAEKSPLSALNVFDAAVRRPGFSPSSAVFHHILRRVAADPGLLLAHAPRI 67

Query: 61  LELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----------- 109
           +  I    C CPEDV L++++AY K  MP++AL VFQ M  +FGC   I           
Sbjct: 68  IAAIH---CPCPEDVPLTLLKAYAKTRMPNEALHVFQTMPHVFGCSPTIRSFNTLLNAFV 124

Query: 110 ---------------------------------LCRKRQFEKAKRFLNSLWEKGLKPDVY 136
                                            +C+K +FEK +  L  +W  G+ PD  
Sbjct: 125 ESHQWARAENFFKYFEAARVSPNVETYNVLMKVMCKKGEFEKGRGLLTWMWGAGMSPDRI 184

Query: 137 SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL 196
           +YGT+I G+ KSGDL  AL VFDEM ERGVE +VVCYN++IDGFFK+GD+++A E+WERL
Sbjct: 185 TYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGEMWERL 244

Query: 197 VMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN 256
           + E  V+P+VV+YNVMI+GLCKCGRF E LE+W+RMKKNER+ D FTY + IHGL +AG+
Sbjct: 245 LREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGD 304

Query: 257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL 316
           + GA +VY EMV  G+  D VT NAM++G C+AG ++ECFELWE MG+    NV SYNI 
Sbjct: 305 LGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNVEECFELWEEMGKCSLRNVRSYNIF 364

Query: 317 IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE--EG 374
           ++GL ENGKVD+A+ +W+ L E    ADS T+GV+++GLC NGY+N+A+Q+L E E  EG
Sbjct: 365 LKGLFENGKVDDAMMLWDGLLE----ADSATYGVVVHGLCWNGYVNRALQVLEEAEHREG 420

Query: 375 G-----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417
           G                 EGRL +A  +V  M+K GCK N++ CN L++GF++ SKL++A
Sbjct: 421 GMDVDEFAYSSLINALCKEGRLDEADGVVELMNKRGCKFNSHVCNVLIDGFVKHSKLDSA 480

Query: 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477
           + +F+EMS KGCS TVVSYN LINGL + ERF EAY  V EMLEKGWKPD+ITYS LI G
Sbjct: 481 VKVFREMSGKGCSLTVVSYNILINGLLRAERFREAYDCVNEMLEKGWKPDIITYSTLIGG 540

Query: 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537
           L +S  +D AL+L  QFL  G  PD+ MYNI+IH LCS+GKVEDALQLYS ++++ CV N
Sbjct: 541 LYESNMMDAALRLWHQFLDTGHKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCV-N 599

Query: 538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN 597
           LVT+NT+M+G +K G+C+ A +IW HILE+ L+PDIISYNITLKGLCSC R++DA  FL+
Sbjct: 600 LVTHNTIMEGFYKVGNCEMASKIWAHILEDELQPDIISYNITLKGLCSCGRVTDAVGFLD 659

Query: 598 DALCRGILPTTITWHILVRAVM 619
           DAL RG LPT ITW+ILVRAV+
Sbjct: 660 DALVRGFLPTAITWNILVRAVI 681

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/686 (42%), Positives = 410/686 (59%), Gaps = 71/686 (10%)

Query: 7   RLLNLLKAEKNPHTALALFDS-ATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIE 65
           RLL L+K+E +   ALA  +   +  P +     L  H+LRRL       H+  +L L+ 
Sbjct: 15  RLLELIKSEPDATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSS-PSHLPCLLNLLP 73

Query: 66  I--QKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------------- 109
               +    E  AL V+ A+ +  MPD ALD F+ +  I GC  GI              
Sbjct: 74  RLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIRSHNALLDAFVRAR 133

Query: 110 ----------------------------------LCRKRQFEKAKRFLNSLWEKGLKPDV 135
                                             LC +   ++A    +SL  + + PD 
Sbjct: 134 RFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDC 193

Query: 136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER 195
            +Y T++ GL K   L  AL + DEM   GV+ +VVCYN L+ G FK G++ +   +W++
Sbjct: 194 ITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDK 253

Query: 196 LVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG 255
           LV +    PN+ TYNVM++GLCK GRF E  E+W+RM  N  + D  TY   IHGLC++G
Sbjct: 254 LVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSG 313

Query: 256 NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNI 315
           +V+GA RVY E++++G+ +DA  YN+++ GFC+AG+++E ++ W+  G  G  N+ +YNI
Sbjct: 314 DVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNI 373

Query: 316 LIRGLLENGKVDEAISIWELL-REKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374
           +I+GL ++G VDEAI +W+LL ++  C  D+ T G LI+GLC+NG+ NKA  I  E    
Sbjct: 374 MIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVS 433

Query: 375 GE-----------------GRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA 417
           G+                 GRL DA  +  +MDK GCK N++  N+L++GF Q  +  +A
Sbjct: 434 GKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDA 493

Query: 418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING 477
           + ++ +M+  GCSPTV++YNTLI+GLCK E++ EA S  +EM+E G+ PD+ TY  LI G
Sbjct: 494 VRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRG 553

Query: 478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMK-KRNCVP 536
           L   KKID AL +  Q L KG   DV M+NILIHGLCSAGKV++AL ++S+MK K+NC P
Sbjct: 554 LFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPP 613

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL 596
           NLVTYNTLMDGL++TG  DKA  +W  I E+ L PDIISYN  +KGLCSC R+ +  + L
Sbjct: 614 NLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLL 673

Query: 597 NDALCRGILPTTITWHILVRAVMNNG 622
           ++ L RGI+PT ITW+ILVRAV+  G
Sbjct: 674 DEVLSRGIIPTVITWNILVRAVIKYG 699

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	625
TAIR|locus:2095309	687	AT3G09060 "AT3G09060" [Arabido	0.963	0.876	0.345	1.1e-92
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.972	0.806	0.295	7.3e-75
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.424	0.421	0.303	1.3e-36
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.652	0.682	0.277	2e-49
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.510	0.519	0.291	1.4e-38
TAIR|locus:2119747	660	EMB1025 "embryo defective 1025	0.843	0.798	0.327	5.1e-67
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.588	0.594	0.284	6.2e-42
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.473	0.469	0.305	1.6e-38
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.849	0.710	0.301	7.4e-66
TAIR|locus:2015213	629	AT1G63150 [Arabidopsis thalian	0.648	0.643	0.274	4.7e-40

TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 219/633 (34%), Positives = 348/633 (54%)

Query:     3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILE 62
             +S K +L LLK+EKNP  A ALFDSATR PGYAHS  ++HHILRRL + ++V HVSRI+E
Sbjct:     8 LSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVE 67

Query:    63 LIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK---RQFEKA 119
             LI  Q+C C EDVALSVI+ YGKNSMPD+ALDVF+RM EIFGCE  I         F +A
Sbjct:    68 LIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEA 127

Query:   120 KRFLN--SLWE----KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY 173
             K+++   SL+      G+ P++ +Y  +I    K  +   A    D M++ G + +V  Y
Sbjct:   128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query:   174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
             + +I+   K G    A E+++ +  E  V P+V  YN++I+G  K       +E+WDR+ 
Sbjct:   188 STVINDLAKAGKLDDALELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLL 246

Query:   234 KNEREKDSF-TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
             ++     +  T+   I GL K G V+   +++  M ++    D  TY+++I G C AG +
Sbjct:   247 EDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNV 306

Query:   293 KECFELW-EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
              +   ++ E+  RK  ++VV+YN ++ G    GK+ E++ +W ++  KN + +  ++ +L
Sbjct:   307 DKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNIL 365

Query:   352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
             I GL +NG +++A  I   +    +G  AD  +       +G  ++   C   +NG++  
Sbjct:   366 IKGLLENGKIDEATMIWRLMP--AKGYAADKTT-------YGIFIHGL-C---VNGYVN- 411

Query:   412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
                  A+ + +E+   G    V +Y ++I+ LCK +R  EA + VKEM + G + +    
Sbjct:   412 ----KALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVC 467

Query:   472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
             + LI GL +  ++  A     +  + G  P V  YNILI GLC AGK  +A      M +
Sbjct:   468 NALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE 527

Query:   532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
                 P+L TY+ L+ GL +    D ALE+W+  L+  L  D++ +NI + GLCS  ++ D
Sbjct:   528 NGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDD 587

Query:   592 AFEFLNDALCRGILPTTITWHILVRAVMNNGAS 624
             A   + +   R      +T++ L+      G S
Sbjct:   588 AMTVMANMEHRNCTANLVTYNTLMEGFFKVGDS 620

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 191/647 (29%), Positives = 331/647 (51%)

Query:     7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI 66
             +LL+ L+++ +   AL LF+ A+++P ++  P L+  IL RL        + +ILE ++ 
Sbjct:    52 KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS 111

Query:    67 QKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE-----KAKR 121
              +C       L +I++Y +  + D+ L V   M + FG +       R         + +
Sbjct:   112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLK 171

Query:   122 FLN------SLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNI 175
              +       S+W  G+KPDV ++  +I  L ++  L  A+ + ++M   G+  +   +  
Sbjct:   172 LVEISHAKMSVW--GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229

Query:   176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN 235
             ++ G+ ++GD   A  I E++V     + NV + NV+++G CK GR ++ L     M   
Sbjct:   230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNV-SVNVIVHGFCKEGRVEDALNFIQEMSNQ 288

Query:   236 ERE-KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE 294
             +    D +T+ + ++GLCKAG+V+ A  +   M++ G   D  TYN++I G C+ G++KE
Sbjct:   289 DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKE 348

Query:   295 CFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN 353
               E+ + M  + C  N V+YN LI  L +  +V+EA  +  +L  K    D  T   LI 
Sbjct:   349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query:   354 GLCKNGYLNKAIQILNEVEEGG-----------------EGRLADAASLVNRMDKHGCKL 396
             GLC       A+++  E+   G                 +G+L +A +++ +M+  GC  
Sbjct:   409 GLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCAR 468

Query:   397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFV 456
             +  T N+L++GF +A+K   A  +F EM   G S   V+YNTLI+GLCK  R  +A   +
Sbjct:   469 SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM 528

Query:   457 KEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA 516
              +M+ +G KPD  TY+ L+   C+   I  A  +       G  PD+  Y  LI GLC A
Sbjct:   529 DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA 588

Query:   517 GKVEDALQLYSN--MKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER-LRPDI 573
             G+VE A +L  +  MK  N  P+   YN ++ GLF+     +A+ ++  +LE+    PD 
Sbjct:   589 GRVEVASKLLRSIQMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDA 646

Query:   574 ISYNITLKGLCSCSR-MSDAFEFLNDALCRGILPTTITWHILVRAVM 619
             +SY I  +GLC+    + +A +FL + L +G +P   + ++L   ++
Sbjct:   647 VSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 81/267 (30%), Positives = 157/267 (58%)

Query:   110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
             LC   ++  A R L+ + E+ + P+V ++  +I+  VK G L+ A  ++DEM +R ++ +
Sbjct:   300 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query:   170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
             +  Y+ LI+GF        AK ++E L++    +PNVVTYN +I G CK  R +E +E++
Sbjct:   360 IFTYSSLINGFCMHDRLDEAKHMFE-LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418

Query:   230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
               M +     ++ TY + I GL +AG+ + A++++++MV  G+  D +TY+ ++DG C+ 
Sbjct:   419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478

Query:   290 GKIKECFELWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
             GK+++   ++E + + K   ++ +YNI+I G+ + GKV++   ++  L  K    +   +
Sbjct:   479 GKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538

Query:   349 GVLINGLCKNGYLNKAIQILNEVEEGG 375
               +I+G C+ G   +A  +  E++E G
Sbjct:   539 TTMISGFCRKGLKEEADALFREMKEDG 565

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 118/425 (27%), Positives = 214/425 (50%)

Query:   207 VTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE 266
             V  N  +  + + G  +E  +  + M  +    D     + I G C+ G    A ++   
Sbjct:   103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162

Query:   267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLLEN 323
             +  SG   D +TYN MI G+C+AG+I     + + M     +   N +  ++   G L+ 
Sbjct:   163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQ 222

Query:   324 GK--VDEAIS--------IWELLREKNCNADSTTHGV-LINGLCKNGYLNKAIQILNEVE 372
                 +D  +          + +L E  C      H + L++ +   G     +   N + 
Sbjct:   223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY-NVLV 281

Query:   373 EG--GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS 430
              G   EGRL +A   +N M   GC+ N  T N ++       +  +A  L  +M RKG S
Sbjct:   282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFS 341

Query:   431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKL 490
             P+VV++N LIN LC+    G A   +++M + G +P+ ++Y+ L++G C+ KK+D A++ 
Sbjct:   342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query:   491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
               + + +G  PD+  YN ++  LC  GKVEDA+++ + +  + C P L+TYNT++DGL K
Sbjct:   402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461

Query:   551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTIT 610
              G   KA+++ + +  + L+PD I+Y+  + GL    ++ +A +F ++    GI P  +T
Sbjct:   462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521

Query:   611 WHILV 615
             ++ ++
Sbjct:   522 FNSIM 526

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 97/333 (29%), Positives = 186/333 (55%)

Query:    63 LIEIQKCYCPEDVAL--SVIQAYGKNSMPDKALDVFQRMN------EIFGCEAGI--LCR 112
             L +++K     DV +  +VI +  K    D AL++F  M+      ++F   + I  LC 
Sbjct:   228 LNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCN 287

Query:   113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC 172
               ++  A R L+ + E+ + P+V ++ ++I+   K G L+ A  +FDEM +R ++ N+V 
Sbjct:   288 YGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT 347

Query:   173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM 232
             YN LI+GF        A++I+  +V +  + P+VVTYN +ING CK  +  + +E++  M
Sbjct:   348 YNSLINGFCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDM 406

Query:   233 KKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
              +     ++ TY + IHG  +A + + A+ V+++MV  G+  + +TYN ++DG C+ GK+
Sbjct:   407 SRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKL 466

Query:   293 KECFELWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
             ++   ++E + + K   ++ +YNI+  G+ + GKV++   ++  L  K    D   +  +
Sbjct:   467 EKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTM 526

Query:   352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAAS 384
             I+G CK G   +A  +  +++E  +G L D+ +
Sbjct:   527 ISGFCKKGLKEEAYTLFIKMKE--DGPLPDSGT 557

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 190/581 (32%), Positives = 282/581 (48%)

Query:    57 VSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI------- 109
             V ++L  I ++     E   + V +AYGK  +PDKA+D+F RM + F C+  +       
Sbjct:    96 VEKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVL 155

Query:   110 --LCRKRQFEKAKRF----LNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE 163
               +  +  + +   F    +NS     + P+  S+  VI  L K   +  A+ VF  M E
Sbjct:   156 NVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPE 215

Query:   164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD 223
             R    +   Y  L+DG  K+     A  + + +  E    P+ V YNV+I+GLCK G   
Sbjct:   216 RKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSE-GCSPSPVIYNVLIDGLCKKGDLT 274

Query:   224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
                ++ D M       +  TY + IHGLC  G ++ A  +   MV S    + VTY  +I
Sbjct:   275 RVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLI 334

Query:   284 DGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCN 342
             +G  +  +  +   L   M  +G  LN   Y++LI GL + GK +EA+S+W  + EK C 
Sbjct:   335 NGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCK 394

Query:   343 ADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCN 402
              +   + VL++GLC+ G  N+A +ILN                  RM   GC  NAYT +
Sbjct:   395 PNIVVYSVLVDGLCREGKPNEAKEILN------------------RMIASGCLPNAYTYS 436

Query:   403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK 462
             SLM GF +    E A+ ++KEM + GCS     Y+ LI+GLC V R  EA     +ML  
Sbjct:   437 SLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTI 496

Query:   463 GWKPDMITYSLLINGLCQSKKIDMALKL----CCQFLQKGFTPDVTMYNILIHGLCSAGK 518
             G KPD + YS +I GLC    +D ALKL     CQ   K   PDV  YNIL+ GLC    
Sbjct:   497 GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKS-QPDVVTYNILLDGLCMQKD 555

Query:   519 VEDALQLYSNMKKRNCVPNLVTYNTLMDGLF-KTGDCDKALEIWNHILEERLRPDIISYN 577
             +  A+ L ++M  R C P+++T NT ++ L  K+  CDK        LEE          
Sbjct:   556 ISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKG----RSFLEE---------- 601

Query:   578 ITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV 618
             + ++ L    R+S A   +   L + + P T TW ++VR +
Sbjct:   602 LVVR-LLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREI 641

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 6.2e-42, P = 6.2e-42
 Identities = 110/387 (28%), Positives = 200/387 (51%)

Query:     2 VISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLI---DPKLVVHVS 58
             +++   L+N L  +     AL L D    E G+      +  +L RL    +  L + + 
Sbjct:   175 LVTVSTLINGLCLKGRVSEALVLIDRMV-EYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query:    59 RILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--------- 109
             R +E   I+       +   VI +  K+   D AL +F  M E+ G +A +         
Sbjct:   234 RKMEERNIKASVVQYSI---VIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLIGG 289

Query:   110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN 169
             LC   +++   + L  +  + + PDV ++  +I+  VK G LL A  +++EM  RG+  +
Sbjct:   290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349

Query:   170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW 229
              + YN LIDGF K+     A ++++ L++     P++VTY+++IN  CK  R D+ + ++
Sbjct:   350 TITYNSLIDGFCKENCLHEANQMFD-LMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408

Query:   230 DRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA 289
               +       ++ TY + + G C++G +  A+ +++EMV  G+    VTY  ++DG C  
Sbjct:   409 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468

Query:   290 GKIKECFELWEVMGR-KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH 348
             G++ +  E++E M + +  L +  YNI+I G+    KVD+A S++  L +K    D  T+
Sbjct:   469 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528

Query:   349 GVLINGLCKNGYLNKAIQILNEVEEGG 375
              V+I GLCK G L++A  +  +++E G
Sbjct:   529 NVMIGGLCKKGSLSEADMLFRKMKEDG 555

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 94/308 (30%), Positives = 172/308 (55%)

Query:    78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWE 128
             ++I    K    D AL++F+ M E  G    +         LC   ++  A R L+ + E
Sbjct:   261 TIIDGLCKYKHMDDALNLFKEM-ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query:   129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR 188
             + + PDV+++  +I+  VK G L+ A  ++DEM +R ++ ++V Y+ LI+GF        
Sbjct:   320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query:   189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI 248
             AK+++E +V +   +P+VVTYN +I G CK  R +E +E++  M +     ++ TY   I
Sbjct:   380 AKQMFEFMVSK-HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438

Query:   249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-KGC 307
              GL +AG+ + A+ +++EMV  G+  + +TYN ++DG C+ GK+++   ++E + R K  
Sbjct:   439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKME 498

Query:   308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI 367
               + +YNI+I G+ + GKV++   ++  L  K    D   +  +I+G C+ G   +A  +
Sbjct:   499 PTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADAL 558

Query:   368 LNEVEEGG 375
               E++E G
Sbjct:   559 FKEMKEDG 566

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 176/583 (30%), Positives = 291/583 (49%)

Query:    69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC----------RKRQFEK 118
             CY    V   V+++Y + S+ DKAL +   + +  G   G+L            KR    
Sbjct:   130 CYSTSSVFDLVVKSYSRLSLIDKALSIVH-LAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query:   119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
             A+     + E  + P+V++Y  +I G   +G++  AL +FD+M  +G   NVV YN LID
Sbjct:   189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query:   179 GFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE 238
             G+ K        ++   + ++  + PN+++YNV+INGLC+ GR  E   +   M +    
Sbjct:   249 GYCKLRKIDDGFKLLRSMALK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307

Query:   239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL 298
              D  TY + I G CK GN   A  ++ EM+  G+    +TY ++I   C+AG +    E 
Sbjct:   308 LDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEF 367

Query:   299 WEVMGRKG-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS---TTHGVLING 354
              + M  +G C N  +Y  L+ G  + G ++EA   + +LRE N N  S    T+  LING
Sbjct:   368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA---YRVLREMNDNGFSPSVVTYNALING 424

Query:   355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL 414
              C  G +  AI +L +++E  +G   D  S              Y+  ++++GF ++  +
Sbjct:   425 HCVTGKMEDAIAVLEDMKE--KGLSPDVVS--------------YS--TVLSGFCRSYDV 466

Query:   415 ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL 474
             + A+ + +EM  KG  P  ++Y++LI G C+  R  EA    +EML  G  PD  TY+ L
Sbjct:   467 DEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTAL 526

Query:   475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
             IN  C    ++ AL+L  + ++KG  PDV  Y++LI+GL    +  +A +L   +     
Sbjct:   527 INAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEES 586

Query:   535 VPNLVTYNTLMDGL----FKT------GDCDKAL-----EIWNHILEERLRPDIISYNIT 579
             VP+ VTY+TL++      FK+      G C K +     +++  +L +  +PD  +YNI 
Sbjct:   587 VPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646

Query:   580 LKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG 622
             + G C    +  A+    + +  G L  T+T   LV+A+   G
Sbjct:   647 IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 4.7e-40, P = 4.7e-40
 Identities = 119/433 (27%), Positives = 219/433 (50%)

Query:   108 GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE 167
             G+    +  E A   ++ + ++G +PD+ +YGTV+NGL K GD+  AL + ++M    ++
Sbjct:   197 GLFLHNKASE-AVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIK 255

Query:   168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS-VYPNVVTYNVMINGLCKCGRFDECL 226
              NVV +N +ID   K      A +++    MET  + PNVVTYN +IN LC  GR+ +  
Sbjct:   256 ANVVIFNTIIDSLCKYRHVEVAVDLFTE--METKGIRPNVVTYNSLINCLCNYGRWSDAS 313

Query:   227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF 286
              +   M + +   +  T+ + I    K G +  AE+++ EM++  I  D +TYN +I+GF
Sbjct:   314 RLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGF 373

Query:   287 CRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS 345
             C   ++ E  ++++ M  K CL N+ +YN LI G  +  +V++ + ++  + ++    ++
Sbjct:   374 CMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNT 433

Query:   346 TTHGVLINGLCKNGYLNKAIQILNE-VEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL 404
              T+  +I G  + G  + A  +  + V       +   + L++ +  +G KL+  T   +
Sbjct:   434 VTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYG-KLD--TALVI 490

Query:   405 MNGFIQASKLENAIFLFKEM----SRKG---------CS----PTVVSYNTLINGLCKVE 447
                ++Q S++E  IF++  M     + G         CS    P VV+YNT+I+GLC   
Sbjct:   491 FK-YLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKR 549

Query:   448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYN 507
                EA    ++M E G  P+  TY+ LI    +      + +L  +    GF  D +  +
Sbjct:   550 LLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTIS 609

Query:   508 ILIHGLCSAGKVE 520
              L+  +   G+++
Sbjct:   610 -LVTNMLHDGRLD 621

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SS81	PP221_ARATH	No assigned EC number	0.5493	0.9888	0.8995	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	625
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-36
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-32
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-30
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-28
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-20
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-20
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-18
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-13
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-10
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
pfam01535	31	pfam01535, PPR, PPR repeat	2e-07
pfam01535	31	pfam01535, PPR, PPR repeat	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-05
pfam01535	31	pfam01535, PPR, PPR repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	9e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
pfam01535	31	pfam01535, PPR, PPR repeat	6e-04
pfam01535	31	pfam01535, PPR, PPR repeat	8e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	8e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  146 bits (369), Expect = 2e-36
 Identities = 109/420 (25%), Positives = 168/420 (40%), Gaps = 84/420 (20%)

Query: 111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
              +  + A R L  + E GLK D   Y T+I+   KSG +     VF EM   GVE NV
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507

Query: 171 VCYNILIDGFFKKGDY---------MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR 221
             +  LIDG  + G           MR+K           V P+ V +N +I+    CG+
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN----------VKPDRVVFNALISA---CGQ 554

Query: 222 -------FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFV 274
                  FD   EM  + + +  + D  T  + +     AG V+ A+ VY+ + E  I  
Sbjct: 555 SGAVDRAFDVLAEM--KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI-- 610

Query: 275 DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWE 334
                                         KG   V  Y I +    + G  D A+SI++
Sbjct: 611 ------------------------------KGTPEV--YTIAVNSCSQKGDWDFALSIYD 638

Query: 335 LLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC 394
            +++K    D      L++     G L+KA +IL +                    K G 
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD------------------ARKQGI 680

Query: 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYS 454
           KL   + +SLM     A   + A+ L++++      PTV + N LI  LC+  +  +A  
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740

Query: 455 FVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
            + EM   G  P+ ITYS+L+    +    D+ L L  Q  + G  P++ M   +  GLC
Sbjct: 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  133 bits (337), Expect = 2e-32
 Identities = 92/392 (23%), Positives = 175/392 (44%), Gaps = 38/392 (9%)

Query: 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263
           P + T+N++++        D  L +   +++   + D   Y + I    K+G V+    V
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 264 YREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV----VSYNILIRG 319
           + EMV +G+  +  T+ A+IDG  RAG++ + F  + +M  K   NV    V +N LI  
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK---NVKPDRVVFNALISA 551

Query: 320 LLENGKVDEAISIWELLREKNCNA-----DSTTHGVLINGLCKNGYLNKAIQILNEVEEG 374
             ++G VD A   +++L E          D  T G L+      G +++A ++       
Sbjct: 552 CGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ----- 603

Query: 375 GEGRLADAASLVNRMDKHGCK--LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPT 432
                         + ++  K     YT    +N   Q    + A+ ++ +M +KG  P 
Sbjct: 604 -------------MIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648

Query: 433 VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCC 492
            V ++ L++         +A+  +++  ++G K   ++YS L+     +K    AL+L  
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 493 QFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552
                   P V+  N LI  LC   ++  AL++ S MK+    PN +TY+ L+    +  
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768

Query: 553 DCDKALEIWNHILEERLRPDIISYNITLKGLC 584
           D D  L++ +   E+ ++P+++     + GLC
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCR-CITGLC 799

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  128 bits (322), Expect = 1e-30
 Identities = 130/516 (25%), Positives = 231/516 (44%), Gaps = 86/516 (16%)

Query: 83  YGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVI 142
           Y K    D+AL ++ RM                          LW  G++PDVY++  V+
Sbjct: 162 YAKAGYFDEALCLYHRM--------------------------LW-AGVRPDVYTFPCVL 194

Query: 143 NGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSV 202
                  DL     V   +   G E +V   N LI  + K GD + A+ +++R+      
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR--- 251

Query: 203 YPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER 262
             + +++N MI+G  + G   E LE++  M++   + D  T  S I     A  + G ER
Sbjct: 252 --DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI----SACELLGDER 305

Query: 263 VYREM----VESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR 318
           + REM    V++G  VD    N++I  +   G   E  +++  M  K   + VS+  +I 
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMIS 362

Query: 319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR 378
           G  +NG  D+A+  + L+ + N + D  T   +++     G L+  ++ L+E        
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK-LHE-------- 413

Query: 379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT 438
           LA+   L++ +            N+L+  + +   ++ A+ +F  +  K     V+S+ +
Sbjct: 414 LAERKGLISYV---------VVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTS 460

Query: 439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITY-SLL-----INGLCQSKKIDMALKLCC 492
           +I GL    R  EA  F ++ML    KP+ +T  + L     I  L   K+I  A  L  
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH-AHVLRT 518

Query: 493 QFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG 552
                GF P     N L+      G++  A   +++ +K     ++V++N L+ G    G
Sbjct: 519 GIGFDGFLP-----NALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHG 568

Query: 553 DCDKALEIWNHILEERLRPDIISYNITLKGLCSCSR 588
               A+E++N ++E  + PD +++ I+L  LC+CSR
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTF-ISL--LCACSR 601

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  121 bits (305), Expect = 2e-28
 Identities = 97/446 (21%), Positives = 179/446 (40%), Gaps = 84/446 (18%)

Query: 205 NVVTYNVMINGLCKCGRFDECLEMWDRM--------------------KKNEREKDSFTY 244
               Y    N L + GR  +C+++ + M                    KK    K++F +
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428

Query: 245 CSFIHG------------LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI 292
              I                 + +++GA RV R + E+G+  D   Y  +I    ++GK+
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488

Query: 293 KECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL 351
              FE++  M   G   NV ++  LI G    G+V +A   + ++R KN   D      L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548

Query: 352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA 411
           I+   ++G +++A  +L E+                + + H    +  T  +LM     A
Sbjct: 549 ISACGQSGAVDRAFDVLAEM----------------KAETHPIDPDHITVGALMKACANA 592

Query: 412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY 471
            +++ A  +++ +       T   Y   +N   +   +  A S   +M +KG KPD + +
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652

Query: 472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK 531
           S L+                          DV  +         AG ++ A ++  + +K
Sbjct: 653 SALV--------------------------DVAGH---------AGDLDKAFEILQDARK 677

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSD 591
           +      V+Y++LM       +  KALE++  I   +LRP + + N  +  LC  +++  
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737

Query: 592 AFEFLNDALCRGILPTTITWHILVRA 617
           A E L++    G+ P TIT+ IL+ A
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVA 763

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 94.6 bits (235), Expect = 5e-20
 Identities = 85/349 (24%), Positives = 161/349 (46%), Gaps = 32/349 (9%)

Query: 279 YNAMIDGFCRAGKIKECFELWEVMGRKGCLNV--VSYNILIRGLLENGKVDEAISIWELL 336
           YN ++    R G+IK+C +L E M ++G L++  + +    +   +   V EA    +L+
Sbjct: 377 YNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432

Query: 337 REKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL 396
           R    N   +T  +L++    +  ++ A+++L  V+E G               K  CKL
Sbjct: 433 R----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL--------------KADCKL 474

Query: 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFV 456
             YT  +L++   ++ K++    +F EM   G    V ++  LI+G  +  +  +A+   
Sbjct: 475 --YT--TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530

Query: 457 KEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFL--QKGFTPDVTMYNILIHGLC 514
             M  K  KPD + ++ LI+   QS  +D A  +  +         PD      L+    
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 515 SAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII 574
           +AG+V+ A ++Y  + + N       Y   ++   + GD D AL I++ + ++ ++PD +
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 575 SYNITLKGLCSCSRMSD-AFEFLNDALCRGILPTTITWHILVRAVMNNG 622
            ++  L  +   +   D AFE L DA  +GI   T+++  L+ A  N  
Sbjct: 651 FFS-ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 94.2 bits (234), Expect = 5e-20
 Identities = 80/386 (20%), Positives = 163/386 (42%), Gaps = 43/386 (11%)

Query: 213 INGLCKCGRFDECLEMWDRMKKNEREK-DSFTYCSFIHGLCKAGNVEGAERVYREMVESG 271
           I  L  CGR  E LE+++ ++        + TY + +       ++   + VY  +  SG
Sbjct: 94  IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153

Query: 272 IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS 331
              D    N ++    + G + +   L++ M  +   N+ S+  +I GL++ G   EA +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFA 210

Query: 332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDK 391
           ++  + E   +A+  T  V++      G      Q+                        
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL------------------------ 246

Query: 392 HGCKL------NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK 445
           H C L      + +   +L++ + +   +E+A  +F  M  K    T V++N+++ G   
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYAL 302

Query: 446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM 505
                EA     EM + G   D  T+S++I    +   ++ A +     ++ GF  D+  
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362

Query: 506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL 565
              L+      G++EDA  ++  M ++    NL+++N L+ G    G   KA+E++  ++
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMI 418

Query: 566 EERLRPDIISYNITLKGLCSCSRMSD 591
            E + P+ +++   L   C  S +S+
Sbjct: 419 AEGVAPNHVTFLAVLSA-CRYSGLSE 443

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 79.0 bits (196), Expect = 2e-18
 Identities = 29/50 (58%), Positives = 36/50 (72%)

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK 550
           PDV  YN LI G C  GKVE+AL+L++ MKKR   PN+ TY+ L+DGL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 109/525 (20%), Positives = 211/525 (40%), Gaps = 100/525 (19%)

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER-------------- 164
           A+R  + + E+ L     S+GT+I GLV +G+   A A+F EM+E               
Sbjct: 177 ARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232

Query: 165 ---------------------GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY 203
                                GV  +      LID + K GD   A+ +++ +  +T   
Sbjct: 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT--- 289

Query: 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV 263
              V +N M+ G    G  +E L ++  M+ +    D FT+   I    +   +E A++ 
Sbjct: 290 --TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347

Query: 264 YREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN 323
           +  ++ +G  +D V   A++D + + G++++   +++ M RK   N++S+N LI G   +
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNH 404

Query: 324 GKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA 383
           G+  +A+ ++E +  +    +  T   +++    +G   +  +I   + E          
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE---------- 454

Query: 384 SLVNRMDKHGCKLNA--YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLIN 441
                   H  K  A  Y C  ++    +   L+ A  + +    K   PTV  +  L+ 
Sbjct: 455 -------NHRIKPRAMHYAC--MIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLT 502

Query: 442 GLCKVERFGEAYSFVKEMLEKGWKPDMI-TYSLLINGLCQSKKIDMALKLCCQFLQKGFT 500
             C++ +  E      E L  G  P+ +  Y +L+N    S +   A K+     +KG +
Sbjct: 503 A-CRIHKNLELGRLAAEKL-YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560

Query: 501 PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP-NLVTY---NTLMDGLFKTGDCDK 556
                    +H  C+  +V+   Q +S        P +   Y   + LM  + + G    
Sbjct: 561 ---------MHPACTWIEVKK--QDHSFFSGDRLHPQSREIYQKLDELMKEISEYG---- 605

Query: 557 ALEIWNHILEER-LRPDIISYNITLKGLCSCSRMSDAFEFLNDAL 600
                 ++ EE  L PD+      + G     +++ AF  +N + 
Sbjct: 606 ------YVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 86.8 bits (215), Expect = 9e-18
 Identities = 99/458 (21%), Positives = 180/458 (39%), Gaps = 86/458 (18%)

Query: 119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID 178
            K     +   G +PD Y    V+   VK G L+ A  +FDEM ER    N+  +  +I 
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIG 197

Query: 179 GFFKKGDYMRA----KEIWERL------------------------------VMETSVYP 204
           G    G+Y  A    +E+WE                                V++T V  
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257

Query: 205 NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY 264
           +      +I+   KCG  ++   ++D M     EK +  + S + G    G  E A  +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313

Query: 265 REMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLEN 323
            EM +SG+ +D  T++ MI  F R   ++   +    + R G  L++V+   L+    + 
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373

Query: 324 GKVDEAISIWELLREKNC---NADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA 380
           G++++A ++++ +  KN    NA       LI G                   G  GR  
Sbjct: 374 GRMEDARNVFDRMPRKNLISWNA-------LIAGY------------------GNHGRGT 408

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR-KGCSPTVVSYNTL 439
            A  +  RM   G   N  T  ++++    +   E    +F+ MS      P  + Y  +
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468

Query: 440 INGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF 499
           I  L +     EAY+ ++      +KP +  ++ L+      K +++      +    G 
Sbjct: 469 IELLGREGLLDEAYAMIR---RAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GM 523

Query: 500 TPD-----VTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
            P+     V + N+      S+G+  +A ++   +K++
Sbjct: 524 GPEKLNNYVVLLNLYN----SSGRQAEAAKVVETLKRK 557

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 86.8 bits (215), Expect = 1e-17
 Identities = 103/484 (21%), Positives = 208/484 (42%), Gaps = 48/484 (9%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVI-----NGLVKSGDLLGALAVFDEMFER 164
           LC   Q E+A + L S+ E  +  D  +Y  +         V+ G  + +          
Sbjct: 61  LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCS-RALSSHPSL 119

Query: 165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE 224
           GV       N ++  F + G+ + A  ++ ++        ++ ++NV++ G  K G FDE
Sbjct: 120 GVRLG----NAMLSMFVRFGELVHAWYVFGKMPER-----DLFSWNVLVGGYAKAGYFDE 170

Query: 225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID 284
            L ++ RM       D +T+   +       ++     V+  +V  G  +D    NA+I 
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230

Query: 285 GFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD 344
            + + G +     +++ M R+ C   +S+N +I G  ENG+  E + ++  +RE + + D
Sbjct: 231 MYVKCGDVVSARLVFDRMPRRDC---ISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287

Query: 345 STTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL 404
             T   +I+          A ++L +   G E        +   + K G  ++   CNSL
Sbjct: 288 LMTITSVIS----------ACELLGDERLGRE--------MHGYVVKTGFAVDVSVCNSL 329

Query: 405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW 464
           +  ++       A  +F  M  K      VS+  +I+G  K     +A      M +   
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385

Query: 465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQ 524
            PD IT + +++       +D+ +KL     +KG    V + N LI        ++ AL+
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445

Query: 525 LYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584
           ++ N+ ++    +++++ +++ GL     C +AL  +  +L   L+P+ ++    +  L 
Sbjct: 446 VFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL---IAALS 497

Query: 585 SCSR 588
           +C+R
Sbjct: 498 ACAR 501

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ 480
           P VV+YNTLI+G CK  +  EA     EM ++G KP++ TYS+LI+GLC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 75.5 bits (187), Expect = 2e-17
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK 253
           P+VVTYN +I+G CK G+ +E L++++ MKK   + + +TY   I GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 71.3 bits (176), Expect = 8e-16
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR 288
            D  TY + I G CK G VE A +++ EM + GI  +  TY+ +IDG C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.4 bits (171), Expect = 4e-15
 Identities = 23/47 (48%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 275 DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGL 320
           D VTYN +IDG+C+ GK++E  +L+  M ++G   NV +Y+ILI GL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.0 bits (170), Expect = 6e-15
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK 445
           +  T N+L++G+ +  K+E A+ LF EM ++G  P V +Y+ LI+GLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.5 bits (161), Expect = 7e-14
 Identities = 20/49 (40%), Positives = 37/49 (75%)

Query: 536 PNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC 584
           P++VTYNTL+DG  K G  ++AL+++N + +  ++P++ +Y+I + GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.1 bits (160), Expect = 1e-13
 Identities = 25/50 (50%), Positives = 35/50 (70%)

Query: 133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK 182
           PDV +Y T+I+G  K G +  AL +F+EM +RG++ NV  Y+ILIDG  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 84/376 (22%), Positives = 155/376 (41%), Gaps = 65/376 (17%)

Query: 246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTY-------------------------- 279
           S +  LC  G +E A ++   M E  + VD   Y                          
Sbjct: 56  SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS 115

Query: 280 ---------NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAI 330
                    NAM+  F R G++      W V G+    ++ S+N+L+ G  + G  DEA+
Sbjct: 116 HPSLGVRLGNAMLSMFVRFGEL---VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172

Query: 331 SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD 390
            ++              H +L  G+  + Y      +L     GG   LA    +   + 
Sbjct: 173 CLY--------------HRMLWAGVRPDVYTFPC--VLRTC--GGIPDLARGREVHAHVV 214

Query: 391 KHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFG 450
           + G +L+    N+L+  +++   + +A  +F  M R+ C    +S+N +I+G  +     
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECL 270

Query: 451 EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510
           E       M E    PD++T + +I+         +  ++    ++ GF  DV++ N LI
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330

Query: 511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLR 570
               S G   +A +++S M+ +    + V++  ++ G  K G  DKALE +  + ++ + 
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386

Query: 571 PDIISYNITLKGLCSC 586
           PD I+    L   C+C
Sbjct: 387 PDEITIASVLSA-CAC 401

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.0 bits (157), Expect = 3e-13
 Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK 218
           +VV YN LIDG+ KKG    A +++  +  +  + PNV TY+++I+GLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.2 bits (155), Expect = 6e-13
 Identities = 19/49 (38%), Positives = 34/49 (69%)

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK 357
           +VV+YN LI G  + GKV+EA+ ++  ++++    +  T+ +LI+GLCK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 71.4 bits (175), Expect = 7e-13
 Identities = 60/262 (22%), Positives = 124/262 (47%), Gaps = 26/262 (9%)

Query: 314 NILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE 373
           N  +R L  +G++++A+ + E ++E     D   +  L   LC+     +A++       
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEW---KRAVE------- 103

Query: 374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
             EG    + +L +     G +L     N++++ F++  +L +A ++F +M  +     +
Sbjct: 104 --EGSRVCSRAL-SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DL 152

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ 493
            S+N L+ G  K   F EA      ML  G +PD+ T+  ++        +    ++   
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212

Query: 494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553
            ++ GF  DV + N LI      G V  A  ++  M +R+C    +++N ++ G F+ G+
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGE 268

Query: 554 CDKALEIWNHILEERLRPDIIS 575
           C + LE++  + E  + PD+++
Sbjct: 269 CLEGLELFFTMRELSVDPDLMT 290

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 87/456 (19%), Positives = 178/456 (39%), Gaps = 95/456 (20%)

Query: 78  SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYS 137
           ++I  Y KN +PDKAL+ +  M +                             + PD  +
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQ---------------------------DNVSPDEIT 391

Query: 138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLV 197
             +V++     GDL   + + +    +G+ + VV  N LI+ + K     +A E++  + 
Sbjct: 392 IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451

Query: 198 METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNV 257
            +     +V+++  +I GL    R  E L  + +M    +  +S T  + +    + G +
Sbjct: 452 EK-----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGAL 505

Query: 258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI 317
              + ++  ++ +GI  D    NA++D + R G++   +  +    +    +VVS+NIL+
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK----DVVSWNILL 561

Query: 318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEG 377
            G + +GK   A+ ++  + E   N D  T   L+    ++G           V +G E 
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM----------VTQGLE- 610

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK-GCSPTVVSY 436
                                                      F  M  K   +P +  Y
Sbjct: 611 ------------------------------------------YFHSMEEKYSITPNLKHY 628

Query: 437 NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ 496
             +++ L +  +  EAY+F+ +M      PD   +  L+N     + +++  +L  Q + 
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELG-ELAAQHIF 684

Query: 497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR 532
           +     V  Y +L +    AGK ++  ++   M++ 
Sbjct: 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.7 bits (146), Expect = 9e-12
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 466 PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC 514
           PD++TY+ LI+G C+  K++ ALKL  +  ++G  P+V  Y+ILI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 61.4 bits (149), Expect = 8e-10
 Identities = 92/422 (21%), Positives = 168/422 (39%), Gaps = 68/422 (16%)

Query: 210 NVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC--KAGNVEGAERVYREM 267
           N  +  LC  G+ ++ L++ + M++     D   Y +    LC  K    EG  RV    
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEG-SRVCSRA 112

Query: 268 VESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD 327
           + S   +     NAM+  F R G++      W V G+    ++ S+N+L+ G  + G  D
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGEL---VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD 169

Query: 328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVN 387
           EA+ ++              H +L  G+  + Y    +  L     GG   LA    +  
Sbjct: 170 EALCLY--------------HRMLWAGVRPDVYTFPCV--LRTC--GGIPDLARGREVHA 211

Query: 388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVE 447
            + + G +L+    N+L+  +++   + +A  +F  M R+ C    +S+N +I+G  +  
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENG 267

Query: 448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYN 507
              E       M E    PD++T + +I+         +  ++    ++ GF  DV++ N
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327

Query: 508 ILIHGLCSAGKVEDA-------------------------------LQLYSNMKKRNCVP 536
            LI    S G   +A                               L+ Y+ M++ N  P
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGL----CSCSRMSDA 592
           + +T  +++      GD D  +++  H L ER    +ISY +    L      C  +  A
Sbjct: 388 DEITIASVLSACACLGDLDVGVKL--HELAERKG--LISYVVVANALIEMYSKCKCIDKA 443

Query: 593 FE 594
            E
Sbjct: 444 LE 445

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 53.5 bits (130), Expect = 9e-10
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEM 459
           KG  P VV+YNTLI+GLC+  R  EA   + EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 43/282 (15%)

Query: 75  VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPD 134
           VA ++I+ Y K    DKAL+VF  + E                                D
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPE-------------------------------KD 454

Query: 135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE 194
           V S+ ++I GL  +     AL  F +M    ++ N V     +    + G  M  KEI  
Sbjct: 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHA 513

Query: 195 RLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA 254
             V+ T +  +    N +++   +CGR +     W++   N  EKD  ++   + G    
Sbjct: 514 H-VLRTGIGFDGFLPNALLDLYVRCGRMNYA---WNQF--NSHEKDVVSWNILLTGYVAH 567

Query: 255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NVVS 312
           G    A  ++  MVESG+  D VT+ +++    R+G + +  E +  M  K  +  N+  
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627

Query: 313 YNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING 354
           Y  ++  L   GK+ EA   +  + +     D    G L+N 
Sbjct: 628 YACVVDLLGRAGKLTEA---YNFINKMPITPDPAVWGALLNA 666

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMK 530
           KG  PDV  YN LI GLC AG+V++A++L   M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 51.6 bits (125), Expect = 5e-09
 Identities = 17/32 (53%), Positives = 25/32 (78%)

Query: 202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMK 233
           + P+VVTYN +I+GLC+ GR DE +E+ D M+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVM 302
            G+  D VTYN +IDG CRAG++ E  EL + M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.9 bits (118), Expect = 6e-08
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 571 PDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRA 617
           PD+++YN  + G C   ++ +A +  N+   RGI P   T+ IL+  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 18/65 (27%)

Query: 344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS 403
           D  T+  LI+G CK G + +A+++ NE                  M K G K N YT + 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNE------------------MKKRGIKPNVYTYSI 43

Query: 404 LMNGF 408
           L++G 
Sbjct: 44  LIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN 537
            YN LI GLC AG+VE+AL+L+  MK+R   P+
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           V+YNTLI+GLCK  R  EA    KEM E+G +PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 207 VTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           VTYN +I+G CK G+ +E LE++  MK+ 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEK 29

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGC 307
           VTYN++I G+C+AGK++E  EL++ M  KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA 276
            TY + I GLCKAG VE A  +++EM E GI  D 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.0 bits (108), Expect = 9e-07
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM 161
           KGLKPDV +Y T+I+GL ++G +  A+ + DEM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 207 VTYNVMINGLCKCGRFDECLEMWDRMKKN 235
           VTYN +I+GLCK GR +E LE++  MK+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKER 29

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 63/330 (19%), Positives = 129/330 (39%), Gaps = 58/330 (17%)

Query: 343 ADSTTH--GVLINGLCKNGYLNKAIQILNEVEEGG----EG------------RLADAAS 384
           + S+TH     +  LC +G L +A+++L  ++E      E             R  +  S
Sbjct: 47  SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGS 106

Query: 385 LV-NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL 443
            V +R       L     N++++ F++  +L +A ++F +M  +     + S+N L+ G 
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGY 162

Query: 444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
            K   F EA      ML  G +PD+ T+  ++        +    ++    ++ GF  DV
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222

Query: 504 -------TMY------------------------NILIHGLCSAGKVEDALQLYSNMKKR 532
                  TMY                        N +I G    G+  + L+L+  M++ 
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDA 592
           +  P+L+T  +++      GD     E+  ++++     D+   N  ++   S     +A
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 593 FEFLNDALCRGILPTTITWHILVRAVMNNG 622
            +  +    +      ++W  ++     NG
Sbjct: 343 EKVFSRMETKDA----VSWTAMISGYEKNG 368

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 15/38 (39%), Positives = 27/38 (71%)

Query: 110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK 147
            C+K + E+A +  N + ++G+KP+VY+Y  +I+GL K
Sbjct: 13  YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 240 DSFTYCSFIHGLCKAGNVEGAERVYREMV 268
           D  TY + I GLC+AG V+ A  +  EM 
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGC 307
           VTYN +IDG C+AG+++E  EL++ M  +G 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 4/35 (11%)

Query: 305 KGC-LNVVSYNILIRGLLENGKVDEAISIWELLRE 338
           KG   +VV+YN LI GL   G+VDEA+   ELL E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAV---ELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 532 RNCVPNLVTYNTLMDGLFKTGDCDKALEIWN 562
           +   P++VTYNTL+DGL + G  D+A+E+ +
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 15/30 (50%), Positives = 21/30 (70%)

Query: 505 MYNILIHGLCSAGKVEDALQLYSNMKKRNC 534
            YN LI G C AGK+E+AL+L+  MK++  
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGI 272
            TY S I G CKAG +E A  +++EM E G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 15/29 (51%), Positives = 25/29 (86%)

Query: 462 KGWKPDMITYSLLINGLCQSKKIDMALKL 490
           KG KPD++TY+ LI+GLC++ ++D A++L
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI 573
           VTYNTL+DGL K G  ++ALE++  + E  + PD+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 339 KNCNADSTTHGVLINGLCKNGYLNKAIQILNE 370
           K    D  T+  LI+GLC+ G +++A+++L+E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 434 VSYNTLINGLCKVERFGEAYSFVKEMLEKG 463
           V+YN+LI+G CK  +  EA    KEM EKG
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.5 bits (96), Expect = 5e-05
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNCNADS 345
           V+YN LI GL + G+V+EA+ +++ ++E+    D 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 12/31 (38%), Positives = 22/31 (70%)

Query: 311 VSYNILIRGLLENGKVDEAISIWELLREKNC 341
           V+YN LI G  + GK++EA+ +++ ++EK  
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 393 GCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS 425
           G K +  T N+L++G  +A +++ A+ L  EM 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVME 199
           +G++ +VV YN LIDG  + G    A E+ +   ME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE--ME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV 433
            T N+L++G  +A ++E A+ LFKEM  +G  P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
           +  YN L+  L  AG  + AL +   MK     P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 242 FTYCSFIHGLCKAGNVEGAERVYREMVESGI 272
            TY + +  L KAG+ + A  V  EM  SG+
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 136 YSYGTVINGLVKSGDLLGALAVFDEMFERGV 166
            +Y ++I+G  K+G L  AL +F EM E+GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV 170
            +Y T+I+GL K+G +  AL +F EM ERG+E +V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 26/35 (74%)

Query: 469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV 503
           +TY+ LI+GLC++ +++ AL+L  +  ++G  PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGC 429
            T NSL++G+ +A KLE A+ LFKEM  KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 539 VTYNTLMDGLFKTGDCDKALEIWNHILEERL 569
           VTYN+L+ G  K G  ++ALE++  + E+ +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 206 VVTYNVMINGLCKCGRFDECLEMWDRMKK 234
           + TYN ++  L K G  D  L + + MK 
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKA 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 569 LRPDIISYNITLKGLCSCSRMSDAFEFLND 598
           L+PD+++YN  + GLC   R+ +A E L++
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV 206
           V YN LIDG  K G    A E+++ +  E  + P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	625
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	100.0
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.96
KOG2076	895	consensus RNA polymerase III transcription factor	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.94
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.93
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG2076	895	consensus RNA polymerase III transcription factor	99.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.86
KOG2003	840	consensus TPR repeat-containing protein [General f	99.86
KOG2003	840	consensus TPR repeat-containing protein [General f	99.86
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.77
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.75
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
KOG1126	638	consensus DNA-binding cell division cycle control	99.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.73
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.69
KOG1126	638	consensus DNA-binding cell division cycle control	99.68
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.68
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.67
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.66
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.61
PRK12370	553	invasion protein regulator; Provisional	99.6
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.57
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.57
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.56
KOG1129	478	consensus TPR repeat-containing protein [General f	99.55
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.55
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.54
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.54
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.53
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.52
PRK12370	553	invasion protein regulator; Provisional	99.51
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.49
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.48
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.48
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.46
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.46
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.44
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.43
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.42
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.39
KOG1125	579	consensus TPR repeat-containing protein [General f	99.38
PRK11189	296	lipoprotein NlpI; Provisional	99.38
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.37
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.33
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.31
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.31
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.25
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.25
PRK04841	903	transcriptional regulator MalT; Provisional	99.24
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.19
PF13041	50	PPR_2: PPR repeat family	99.18
KOG1125	579	consensus TPR repeat-containing protein [General f	99.18
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.15
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.13
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.11
PRK04841	903	transcriptional regulator MalT; Provisional	99.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.09
PF13041	50	PPR_2: PPR repeat family	99.07
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.05
PLN02789	320	farnesyltranstransferase	99.05
PLN02789	320	farnesyltranstransferase	99.02
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.99
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.98
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.97
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.94
PRK15359	144	type III secretion system chaperone protein SscB;	98.92
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.89
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.89
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.87
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.86
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.81
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.8
PRK15359	144	type III secretion system chaperone protein SscB;	98.79
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.77
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.73
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.68
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.67
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.61
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.54
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.54
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.52
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.5
PF12854	34	PPR_1: PPR repeat	98.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.37
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.36
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.35
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.35
PF12854	34	PPR_1: PPR repeat	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.31
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.27
KOG0553	304	consensus TPR repeat-containing protein [General f	98.26
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.24
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.21
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.19
KOG0553	304	consensus TPR repeat-containing protein [General f	98.18
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.15
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.14
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.13
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.12
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.1
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.1
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.07
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.06
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	98.06
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.04
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	98.04
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.03
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.98
PRK10803	263	tol-pal system protein YbgF; Provisional	97.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.97
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.97
PF12688	120	TPR_5: Tetratrico peptide repeat	97.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.93
PRK15331	165	chaperone protein SicA; Provisional	97.93
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.92
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.91
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.88
PF12688	120	TPR_5: Tetratrico peptide repeat	97.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.87
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.85
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.81
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.79
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.79
PF13371	73	TPR_9: Tetratricopeptide repeat	97.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.76
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.75
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.74
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.73
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.71
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.71
PRK10803	263	tol-pal system protein YbgF; Provisional	97.7
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.68
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.67
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.66
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.64
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.62
PF13512	142	TPR_18: Tetratricopeptide repeat	97.57
KOG1258	577	consensus mRNA processing protein [RNA processing	97.56
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.56
PF13512	142	TPR_18: Tetratricopeptide repeat	97.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.41
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.41
KOG1585	308	consensus Protein required for fusion of vesicles	97.4
PF13371	73	TPR_9: Tetratricopeptide repeat	97.37
PRK15331	165	chaperone protein SicA; Provisional	97.37
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.28
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.28
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.21
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.16
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.15
KOG1258	577	consensus mRNA processing protein [RNA processing	97.14
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.14
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.12
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.1
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.08
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.07
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.04
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.92
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.87
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.83
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.79
KOG1586	288	consensus Protein required for fusion of vesicles	96.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.75
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.75
PF13428	44	TPR_14: Tetratricopeptide repeat	96.72
KOG4555	175	consensus TPR repeat-containing protein [Function	96.71
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.65
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.64
PRK11906	458	transcriptional regulator; Provisional	96.58
PF13428	44	TPR_14: Tetratricopeptide repeat	96.54
KOG4555	175	consensus TPR repeat-containing protein [Function	96.5
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.42
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.41
PRK11906	458	transcriptional regulator; Provisional	96.34
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.28
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.19
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.17
KOG1585	308	consensus Protein required for fusion of vesicles	96.15
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.08
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.89
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.86
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.7
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.68
PF13431	34	TPR_17: Tetratricopeptide repeat	95.63
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.63
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.61
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.36
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.3
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.3
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.16
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.15
KOG4648	536	consensus Uncharacterized conserved protein, conta	95.14
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.86
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.8
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.79
PF13431	34	TPR_17: Tetratricopeptide repeat	94.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.75
KOG4234	271	consensus TPR repeat-containing protein [General f	94.71
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.65
PRK11619	644	lytic murein transglycosylase; Provisional	94.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.55
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.39
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.38
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.29
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.14
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.09
KOG4234	271	consensus TPR repeat-containing protein [General f	94.04
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.98
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.96
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.93
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	93.73
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.64
PRK11619	644	lytic murein transglycosylase; Provisional	93.6
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.32
KOG1586	288	consensus Protein required for fusion of vesicles	93.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.1
KOG3941	406	consensus Intermediate in Toll signal transduction	93.08
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	93.08
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.06
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.92
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.45
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	92.15
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	91.96
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	91.9
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.78
KOG3941	406	consensus Intermediate in Toll signal transduction	91.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.64
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.46
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.38
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.07
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.92
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.88
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.85
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	90.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.53
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.45
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.28
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.21
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.17
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.01
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.94
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.81
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.79
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.78
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.71
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	89.63
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.17
KOG2471	696	consensus TPR repeat-containing protein [General f	89.04
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.87
KOG2062	929	consensus 26S proteasome regulatory complex, subun	88.42
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.4
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.17
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.83
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.39
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.04
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	86.75
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.58
COG3947	361	Response regulator containing CheY-like receiver a	86.52
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.48
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	86.45
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.33
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	86.29
KOG3364	149	consensus Membrane protein involved in organellar	86.01
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.4
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.36
PRK09687	280	putative lyase; Provisional	85.33
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.32
COG3947	361	Response regulator containing CheY-like receiver a	85.32
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.23
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.99
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	84.75
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	84.33
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.1
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	84.08
KOG3364	149	consensus Membrane protein involved in organellar	84.06
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.75
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.48
PRK10941	269	hypothetical protein; Provisional	83.46
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	83.22
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	82.92
PF13929	292	mRNA_stabil: mRNA stabilisation	82.73
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	81.53
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	81.19
PRK10941	269	hypothetical protein; Provisional	80.74
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	80.48
KOG2300	629	consensus Uncharacterized conserved protein [Funct	80.06
KOG4570	418	consensus Uncharacterized conserved protein [Funct	80.02

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-71  Score=584.80  Aligned_cols=598  Identities=20%  Similarity=0.295  Sum_probs=523.9

Q ss_pred             CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112            4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus         4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      +++.+.+.+.+.|++++|..+|+... ..|.+++..++..++.++.+.+.++.|..++..+.+.++.++..+++.++..|
T Consensus        53 ~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~  131 (857)
T PLN03077         53 DSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF  131 (857)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence            34677889999999999999999854 45778899999999999999999999999999999999888889999999999


Q ss_pred             HccCCchHHHHHHHHhHHh----hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           84 GKNSMPDKALDVFQRMNEI----FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      .+.|+.+.|+.+|+.+++.    +......|.+.|++++|..+|++|...|+.||..+|+.++.+|.+.+++..+.+++.
T Consensus       132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~  211 (857)
T PLN03077        132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA  211 (857)
T ss_pred             HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence            9999999999999999653    222233389999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      .+.+.|+.||..+++.++.+|++.|+++.|..+|+.|.     .||..+|+.++.+|++.|++++|+++|++|...|+.|
T Consensus       212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P  286 (857)
T PLN03077        212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP  286 (857)
T ss_pred             HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999984     4788999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      |..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|..   ++..+|+.++.+
T Consensus       287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~  363 (857)
T PLN03077        287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISG  363 (857)
T ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999875   488899999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------------CCchHHH
Q 038112          320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG-----------------EGRLADA  382 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~a  382 (625)
                      |.+.|++++|+++|++|...|+.||..|+..++.+|++.|+++.|.++++.+.+.+                 .++.++|
T Consensus       364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A  443 (857)
T PLN03077        364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA  443 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999776654                 4566667


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          383 ASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                      ..+++.|..    ++..+|+.++.+|.+.|+.++|..+|++|.. +..||..+|+.++.+|++.|..+.+.+++..+.+.
T Consensus       444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~  518 (857)
T PLN03077        444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT  518 (857)
T ss_pred             HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence            777766653    3556777777777777777777777777764 46677777777777777777777777777777777


Q ss_pred             CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112          463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN  542 (625)
Q Consensus       463 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  542 (625)
                      |+.++..+++.++.+|++.|++++|.++|+.+     .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+
T Consensus       519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~  593 (857)
T PLN03077        519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI  593 (857)
T ss_pred             CCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence            77777777777777777777777777777765     4678888888888888888888888888888888888888888


Q ss_pred             HHHHHHHccCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112          543 TLMDGLFKTGDCDKALEIWNHIL-EERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN  621 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  621 (625)
                      .++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++++|.+.|++++|.+++++|   .+.||..+|++|+.+|...
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~  670 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIH  670 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc
Confidence            88888888888888888888888 5688888888888888888888888888888888   3778888888888888776


Q ss_pred             CC
Q 038112          622 GA  623 (625)
Q Consensus       622 g~  623 (625)
                      |+
T Consensus       671 ~~  672 (857)
T PLN03077        671 RH  672 (857)
T ss_pred             CC
Confidence            65

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.5e-68  Score=561.18  Aligned_cols=569  Identities=19%  Similarity=0.240  Sum_probs=521.4

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA   82 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   82 (625)
                      ++++.+...+.+.|++++|+.+|+.+.. .|..|+..+|..++.++...++...+.+++..+.+.+..++..+++.++.+
T Consensus       153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~  231 (857)
T PLN03077        153 FSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM  231 (857)
T ss_pred             eEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH
Confidence            4667788888888888888888887543 477888888888888888888888888888888888888888899999999


Q ss_pred             HHccCCchHHHHHHHHhHHhhC----CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112           83 YGKNSMPDKALDVFQRMNEIFG----CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF  158 (625)
Q Consensus        83 ~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  158 (625)
                      |.+.|++++|..+|+.++....    .....|++.|++++|..+|++|...|+.||..+|+.++.+|.+.|+.+.|.+++
T Consensus       232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~  311 (857)
T PLN03077        232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH  311 (857)
T ss_pred             HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence            9999999999999999965322    222338899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112          159 DEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE  238 (625)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  238 (625)
                      ..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.     .||..+|+.++.+|.+.|++++|+++|++|.+.++.
T Consensus       312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~  386 (857)
T PLN03077        312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS  386 (857)
T ss_pred             HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999884     478899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 038112          239 KDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIR  318 (625)
Q Consensus       239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  318 (625)
                      ||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|.+.|++++|.++|+.|..   ++..+|+.++.
T Consensus       387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~  463 (857)
T PLN03077        387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIA  463 (857)
T ss_pred             CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999875   37789999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH
Q 038112          319 GLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA  398 (625)
Q Consensus       319 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  398 (625)
                      +|.+.|+.++|+.+|++|.. ++.||..|+..++.+|.+.|..+.+.+++.                  .+.+.|..++.
T Consensus       464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~------------------~~~~~g~~~~~  524 (857)
T PLN03077        464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA------------------HVLRTGIGFDG  524 (857)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH------------------HHHHhCCCccc
Confidence            99999999999999999986 589999999999999999999999999988                  78889999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL  478 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  478 (625)
                      .+++.++.+|.+.|++++|.++|+.+     .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|
T Consensus       525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  599 (857)
T PLN03077        525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC  599 (857)
T ss_pred             eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            99999999999999999999999987     4799999999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112          479 CQSKKIDMALKLCCQFL-QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  557 (625)
                      .+.|.+++|.++|+.|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|.   +.||..+|..|+.+|...|+.+.+
T Consensus       600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHH
Confidence            99999999999999999 67999999999999999999999999999999984   689999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          558 LEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       558 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      ....+++.+  +.|+. ..|..+...|...|+|++|.++.+.|.+.|+++++.
T Consensus       677 e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g  727 (857)
T PLN03077        677 ELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG  727 (857)
T ss_pred             HHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence            999999998  78854 666777789999999999999999999999988763

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-65  Score=525.55  Aligned_cols=523  Identities=21%  Similarity=0.315  Sum_probs=476.1

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK  113 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  113 (625)
                      +.+...+..+...+.+.|++++|.++|+.|.+.+.. ++...+..++..|.+.|.+++|..+|+.+              
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M--------------  432 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI--------------  432 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--------------
Confidence            445666677777777888888888888888887743 34445566777788888888887777766              


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                                   .    .|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus       433 -------------~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf  495 (1060)
T PLN03218        433 -------------R----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF  495 (1060)
T ss_pred             -------------C----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence                         1    38999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE--SG  271 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~  271 (625)
                      +.|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.++|++|..  .+
T Consensus       496 ~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g  574 (1060)
T PLN03218        496 HEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP  574 (1060)
T ss_pred             HHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence            9999876 88999999999999999999999999999999999999999999999999999999999999999986  57


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112          272 IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV  350 (625)
Q Consensus       272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  350 (625)
                      +.||..+|+.++.+|++.|++++|.++|+.|.+.+. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus       575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns  654 (1060)
T PLN03218        575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA  654 (1060)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            899999999999999999999999999999999885 4899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      ++.+|++.|++++|.++++                  .|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...++.
T Consensus       655 LI~a~~k~G~~eeA~~l~~------------------eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~  716 (1060)
T PLN03218        655 LVDVAGHAGDLDKAFEILQ------------------DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR  716 (1060)
T ss_pred             HHHHHHhCCCHHHHHHHHH------------------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999998                  7888899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI  510 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  510 (625)
                      ||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.+++.+|.+.|+.||..+|+.++
T Consensus       717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI  796 (1060)
T PLN03218        717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT  796 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHc----C-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038112          511 HGLCS----A-------------------GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE  567 (625)
Q Consensus       511 ~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  567 (625)
                      ..|.+    .                   +..+.|..+|++|.+.|+.||..+|+.++.++.+.+..+.+..+++.+...
T Consensus       797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~  876 (1060)
T PLN03218        797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS  876 (1060)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence            65432    1                   224679999999999999999999999998888999999999999998888


Q ss_pred             CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          568 RLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       568 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      +..|+..+|+.+++++.+.  .++|..++++|.+.|+.|+..
T Consensus       877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            8888999999999998432  468999999999999999875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-63  Score=510.83  Aligned_cols=488  Identities=18%  Similarity=0.280  Sum_probs=462.4

Q ss_pred             hhhcCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGL-KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR  188 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  188 (625)
                      +++.|++++|.++|++|...++ +++...++.++..|.+.|..++|..+|+.|..    |+..+|+.++.+|++.|+++.
T Consensus       380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~  455 (1060)
T PLN03218        380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG  455 (1060)
T ss_pred             HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence            5677899999999999988875 56788888999999999999999999999874    799999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV  268 (625)
Q Consensus       189 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  268 (625)
                      |.++|+.|.+.+ ..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus       456 A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~  534 (1060)
T PLN03218        456 ALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR  534 (1060)
T ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            999999999877 8999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C-CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Q 038112          269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK--G-CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS  345 (625)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  345 (625)
                      +.|+.||..+|+.++.+|++.|++++|.++|++|...  + .++..+|+.++.+|++.|++++|.++|+.|.+.++.|+.
T Consensus       535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~  614 (1060)
T PLN03218        535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP  614 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence            9999999999999999999999999999999999863  2 458999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          346 TTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMS  425 (625)
Q Consensus       346 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  425 (625)
                      .+|+.++.+|++.|++++|..+|+                  .|...|+.||..+|+.++.+|.+.|++++|.++|+.|.
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~------------------eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~  676 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYD------------------DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR  676 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH------------------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999999999                  78889999999999999999999999999999999999


Q ss_pred             hCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112          426 RKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM  505 (625)
Q Consensus       426 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  505 (625)
                      +.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+
T Consensus       677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T  756 (1060)
T PLN03218        677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT  756 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----c-------------------CChhHHHHHHH
Q 038112          506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----T-------------------GDCDKALEIWN  562 (625)
Q Consensus       506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~  562 (625)
                      |+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+    .                   +..++|..+|+
T Consensus       757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~  836 (1060)
T PLN03218        757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR  836 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence            999999999999999999999999999999999999999876542    1                   22467999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112          563 HILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN  620 (625)
Q Consensus       563 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  620 (625)
                      +|.+.|+.||..+|..++.++++.+..+.+.++++.|...+..|+..+|++++.++++
T Consensus       837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~  894 (1060)
T PLN03218        837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE  894 (1060)
T ss_pred             HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence            9999999999999999998888999999999999999888888999999999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.1e-59  Score=482.11  Aligned_cols=460  Identities=17%  Similarity=0.292  Sum_probs=431.0

Q ss_pred             hcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH
Q 038112          112 RKRQFEKAKRFLNSLWEK-GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK  190 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  190 (625)
                      +.|++++|..+|+.|... +..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+.++.+|.+.|+++.|.
T Consensus        99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  178 (697)
T PLN03081         99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR  178 (697)
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence            333444444444444443 3578999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      ++|+.|.     .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.++...|..+.+.+++..+.+.
T Consensus       179 ~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~  253 (697)
T PLN03081        179 RLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT  253 (697)
T ss_pred             HHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            9999984     47999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112          271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV  350 (625)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  350 (625)
                      |+.||..+++.++.+|++.|++++|.++|+.|..   ++..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.
T Consensus       254 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~  330 (697)
T PLN03081        254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI  330 (697)
T ss_pred             CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999999999999999999999999999999865   4899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      ++.+|++.|+++.|.+++.                  .+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+    
T Consensus       331 ll~a~~~~g~~~~a~~i~~------------------~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----  388 (697)
T PLN03081        331 MIRIFSRLALLEHAKQAHA------------------GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----  388 (697)
T ss_pred             HHHHHHhccchHHHHHHHH------------------HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence            9999999999999999998                  788899999999999999999999999999999999964    


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ-KGFTPDVTMYNIL  509 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l  509 (625)
                      ||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.+
T Consensus       389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l  468 (697)
T PLN03081        389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM  468 (697)
T ss_pred             CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence            699999999999999999999999999999999999999999999999999999999999999986 6899999999999


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCC
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSR  588 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  588 (625)
                      +.+|++.|++++|.++++++   ++.|+..+|+.|+.+|...|+++.|..+++++.+  +.|+ ..+|..++..|.+.|+
T Consensus       469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence            99999999999999998876   4789999999999999999999999999999987  7774 5799999999999999


Q ss_pred             hHHHHHHHHHHHHCCCCC
Q 038112          589 MSDAFEFLNDALCRGILP  606 (625)
Q Consensus       589 ~~~A~~~~~~~~~~~~~~  606 (625)
                      +++|.++++.|.+.|+.+
T Consensus       544 ~~~A~~v~~~m~~~g~~k  561 (697)
T PLN03081        544 QAEAAKVVETLKRKGLSM  561 (697)
T ss_pred             HHHHHHHHHHHHHcCCcc
Confidence            999999999999998753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6.8e-57  Score=461.62  Aligned_cols=509  Identities=20%  Similarity=0.295  Sum_probs=441.9

Q ss_pred             CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112            4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus         4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      ++..+...+...|++++|+.+|+++....+..++..+|..++.++.+.++++.|.+++..+.+.+..++..+++.++.+|
T Consensus        89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y  168 (697)
T PLN03081         89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH  168 (697)
T ss_pred             eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            55667778888999999999999877665667889999999999999999999999999999999888999999999999


Q ss_pred             HccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           84 GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .+.|+++.|.++|+.++                               .||..+|+.++.+|.+.|++++|.++|++|.+
T Consensus       169 ~k~g~~~~A~~lf~~m~-------------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~  217 (697)
T PLN03081        169 VKCGMLIDARRLFDEMP-------------------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWE  217 (697)
T ss_pred             hcCCCHHHHHHHHhcCC-------------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999998872                               37889999999999999999999999999999


Q ss_pred             CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112          164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT  243 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  243 (625)
                      .|+.|+..+|..++.++...|..+.+.+++..+.+.+ ..||..+++.++.+|++.|++++|.++|++|.    ++|..+
T Consensus       218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt  292 (697)
T PLN03081        218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVA  292 (697)
T ss_pred             hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhH
Confidence            9999999999999999999999999999999888877 88999999999999999999999999999996    578899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHh
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILIRGLLE  322 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~  322 (625)
                      |+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..+.+.+.. +..+++.|+.+|++
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k  372 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK  372 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988854 88999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHH
Q 038112          323 NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCN  402 (625)
Q Consensus       323 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  402 (625)
                      .|++++|.++|++|.+    ||..+|+.++.+|++.|+.++|.++|+                  +|...|+.||..+|+
T Consensus       373 ~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~------------------~M~~~g~~Pd~~T~~  430 (697)
T PLN03081        373 WGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE------------------RMIAEGVAPNHVTFL  430 (697)
T ss_pred             CCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH------------------HHHHhCCCCCHHHHH
Confidence            9999999999998864    588899999999999999999999998                  788889999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112          403 SLMNGFIQASKLENAIFLFKEMSR-KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS  481 (625)
Q Consensus       403 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  481 (625)
                      .++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++++|.+++++|   ++.|+..+|+.++.+|...
T Consensus       431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~  507 (697)
T PLN03081        431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIH  507 (697)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHc
Confidence            999999999999999999999975 588999999999999999999999999998765   4689999999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH---HHH----cc--
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMD---GLF----KT--  551 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~---~~~----~~--  551 (625)
                      |+++.|..+++++.+.+ +.+..+|..++..|++.|++++|.++++.|.+.|+... ..+|..+..   .+.    .+  
T Consensus       508 g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~  586 (697)
T PLN03081        508 KNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ  586 (697)
T ss_pred             CCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCcc
Confidence            99999999999887653 33567899999999999999999999999999887533 222211100   000    01  


Q ss_pred             --CChhHHHHHHHHHHHcCCCCCHH
Q 038112          552 --GDCDKALEIWNHILEERLRPDII  574 (625)
Q Consensus       552 --g~~~~A~~~~~~~~~~~~~p~~~  574 (625)
                        .-++...++..+|.+.|..||..
T Consensus       587 ~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        587 SREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcc
Confidence              11344556677777788888643

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.2e-39  Score=353.28  Aligned_cols=597  Identities=15%  Similarity=0.082  Sum_probs=397.2

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      ++.++...|++++|...++.+.+..  |.++..+...+..+...|++++|...++.+++.++. ....+..++..+...|
T Consensus       233 ~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g  309 (899)
T TIGR02917       233 LATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLG  309 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcC
Confidence            4455555566666666665555444  444444444444445555555555555555554422 2233334444455555


Q ss_pred             CchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112           88 MPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE  160 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  160 (625)
                      ++++|...|+++.+..|..+.+       +.+.|++++|...++++...+ +.+...+..+...+.+.|++++|...|++
T Consensus       310 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  388 (899)
T TIGR02917       310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAK  388 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555555555554444433322       334444444444444444432 23344444444444444444444444444


Q ss_pred             HHhCCCCCCchhhH----------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc
Q 038112          161 MFERGVETNVVCYN----------------------------------ILIDGFFKKGDYMRAKEIWERLVMETSVYPNV  206 (625)
Q Consensus       161 ~~~~~~~~~~~~~~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  206 (625)
                      +.+..+ .+...+.                                  .++..+.+.|++++|..+++.+...  .+++.
T Consensus       389 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~  465 (899)
T TIGR02917       389 ATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK--QPDNA  465 (899)
T ss_pred             HHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCc
Confidence            443321 1223333                                  3444444555555555555555443  23445


Q ss_pred             chHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112          207 VTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF  286 (625)
Q Consensus       207 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (625)
                      .++..++..+...|++++|.+.|+++.+..+ .+...+..++..+...|++++|.+.++++....+ .+..++..+...+
T Consensus       466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  543 (899)
T TIGR02917       466 SLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLY  543 (899)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence            5666666666667777777777766665432 3444555666666667777777777777666542 2556666667777


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112          287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ  366 (625)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  366 (625)
                      .+.|++++|..+++.+....+.+...+..++..+...|++++|..+++.+.... +.+...+..++..+...|++++|..
T Consensus       544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  622 (899)
T TIGR02917       544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS  622 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            777777777777777766666666677777777777777777777777776653 2356667777777777777777777


Q ss_pred             HHHHHHhcC----------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          367 ILNEVEEGG----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       367 ~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      .++++....                .++.++|...+..+.... +.+...+..++..+...|++++|..+++.+.+.. +
T Consensus       623 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  700 (899)
T TIGR02917       623 SFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P  700 (899)
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence            777765443                455666777777766553 3356777888888888888888888888887764 3


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI  510 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  510 (625)
                      .+...+..+...+...|++++|...++++...  .|+..++..++..+.+.|++++|.+.++++.+.. +.+...+..++
T Consensus       701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la  777 (899)
T TIGR02917       701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALA  777 (899)
T ss_pred             CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            36667778888888899999999999998875  4555777788888999999999999999988864 55788888999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCh
Q 038112          511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRM  589 (625)
Q Consensus       511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  589 (625)
                      ..|...|++++|..+|+++.+.+ +++..+++.++..+...|+ .+|+.+++++.+  ..| ++.++..++.++.+.|++
T Consensus       778 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~  853 (899)
T TIGR02917       778 ELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEA  853 (899)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCH
Confidence            99999999999999999999873 6678889999999999999 889999999998  556 456777888899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCC
Q 038112          590 SDAFEFLNDALCRGILPTTITWHILVRAVMNNGAS  624 (625)
Q Consensus       590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  624 (625)
                      ++|.++++++++.+. .++.++..+..++.+.|+.
T Consensus       854 ~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~  887 (899)
T TIGR02917       854 DRALPLLRKAVNIAP-EAAAIRYHLALALLATGRK  887 (899)
T ss_pred             HHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCH
Confidence            999999999998653 3788999999999998864

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.9e-39  Score=348.03  Aligned_cols=598  Identities=13%  Similarity=0.072  Sum_probs=326.4

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      ++.++..+|++++|+..++.++...  |.++.++..++..+...|++++|...|+.++..+| .+..++..++..+...|
T Consensus       165 la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g  241 (899)
T TIGR02917       165 LAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAG  241 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcC
Confidence            3344444444444444444444433  44444444444444455555555555555544432 24444444444555555


Q ss_pred             CchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112           88 MPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE  160 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  160 (625)
                      ++++|...++.+.+..|..+..       +...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++
T Consensus       242 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  320 (899)
T TIGR02917       242 EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQ  320 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555444433333222       233444555555554444433 11122222333333444444444444444


Q ss_pred             HHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 038112          161 MFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKD  240 (625)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  240 (625)
                      +.+.. +.+...+..++..+...|++++|...+..+....  +.+...+..++..+.+.|++++|.+.|+++....+ .+
T Consensus       321 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~  396 (899)
T TIGR02917       321 ILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-EN  396 (899)
T ss_pred             HHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence            44432 1233333444444444444444444444444331  22333444444444444555555554444443321 12


Q ss_pred             hhhHHHHH----------------------------------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112          241 SFTYCSFI----------------------------------HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF  286 (625)
Q Consensus       241 ~~~~~~l~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (625)
                      ...+..+.                                  ..+...|++++|..+++.+.... +.+..++..++.++
T Consensus       397 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  475 (899)
T TIGR02917       397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIY  475 (899)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence            33333333                                  34444444444444444444332 22445555556666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112          287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ  366 (625)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  366 (625)
                      ...|++++|.+.|+++....|.+..++..++..+...|++++|.+.++.+....+. +..++..+...+...|++++|..
T Consensus       476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  554 (899)
T TIGR02917       476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVA  554 (899)
T ss_pred             HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666666555555556666666666666666666666666554322 44555555666666666666666


Q ss_pred             HHHHHHhcC----------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          367 ILNEVEEGG----------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       367 ~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      .++++....                .++.++|..+++.+.... +.+...|..++.++...|++++|...|+.+.+..+ 
T Consensus       555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-  632 (899)
T TIGR02917       555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-  632 (899)
T ss_pred             HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence            666554332                345555666665555432 33555666666677777777777777776665432 


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI  510 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  510 (625)
                      .+...+..+..++...|++++|..+++++.+. .+.+..++..++..+...|++++|..+++.+.+.+ +++...+..++
T Consensus       633 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  710 (899)
T TIGR02917       633 DSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEG  710 (899)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHH
Confidence            24455666666666677777777777766654 23345566666666777777777777777766653 34566666677


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChH
Q 038112          511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMS  590 (625)
Q Consensus       511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  590 (625)
                      .++...|++++|...|+++...  .|+..++..++.++.+.|++++|.+.++++++. .+.+...+..++..|.+.|+++
T Consensus       711 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~  787 (899)
T TIGR02917       711 DLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYD  787 (899)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHH
Confidence            7777777777777777777764  344466666777777777777777777777763 1225566777777777778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038112          591 DAFEFLNDALCRGILPTTITWHILVRAVMNNGA  623 (625)
Q Consensus       591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  623 (625)
                      +|.++|+++++.. ++++..+..+...+...|+
T Consensus       788 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       788 KAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence            8888888777643 3455667777777666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.6e-32  Score=292.86  Aligned_cols=575  Identities=13%  Similarity=0.054  Sum_probs=415.7

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHH-------------
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDV-------------   75 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------   75 (625)
                      +++...+++.+.|.+.+++++..+  |.++.++..++..+.+.|+.++|.+.++++.+..|. +...             
T Consensus        35 ~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~  111 (1157)
T PRK11447         35 VRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE  111 (1157)
T ss_pred             HHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence            467778999999999999999888  999999999999999999999999999999999854 4333             


Q ss_pred             ---HHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---hh-----hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 038112           76 ---ALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---LC-----RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING  144 (625)
Q Consensus        76 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~-----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  144 (625)
                         ....++.+.+.|++++|...|+++.+..|.....   +.     ..|++++|+..|+++.... |.+...+..+...
T Consensus       112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l  190 (1157)
T PRK11447        112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL  190 (1157)
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence               2455668899999999999999998776665543   22     2499999999999999986 6678888899999


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCC--chh-----------------hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 038112          145 LVKSGDLLGALAVFDEMFERGVETN--VVC-----------------YNILIDGFFKKGDYMRAKEIWERLVMETSVYPN  205 (625)
Q Consensus       145 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  205 (625)
                      +...|+.++|+..++++........  ...                 +...+..+-.......|...+....... ..|.
T Consensus       191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~dp~  269 (1157)
T PRK11447        191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL-ADPA  269 (1157)
T ss_pred             HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cCcc
Confidence            9999999999999999876421100  000                 1111111111122334444444433221 1122


Q ss_pred             cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHH-----
Q 038112          206 VVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD-AVTY-----  279 (625)
Q Consensus       206 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----  279 (625)
                      . ........+...|++++|+..|++..+..+ .+...+..+...+.+.|++++|+..|++.++..+... ...+     
T Consensus       270 ~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        270 F-RARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             h-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            1 112345667788888888888888887654 3677788888888888888888888888887643221 1111     


Q ss_pred             -------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112          280 -------NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI  352 (625)
Q Consensus       280 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  352 (625)
                             ......+.+.|++++|+..|+++....|.+..++..+..++...|++++|++.|+++.+..+. +...+..+.
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~  426 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA  426 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence                   223456678888888888888888888888888888888888888888888888888877433 344555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc-------------------------CCCchHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 038112          353 NGLCKNGYLNKAIQILNEVEEG-------------------------GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG  407 (625)
Q Consensus       353 ~~~~~~~~~~~a~~~~~~~~~~-------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  407 (625)
                      ..+. .++.++|...++.+...                         ..++.++|+..+++.....+. ++..+..+...
T Consensus       427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~  504 (1157)
T PRK11447        427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD  504 (1157)
T ss_pred             HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            5553 45677777776543211                         146677777777777766443 56677788888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHh---------hHHHHHHHH
Q 038112          408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI---------TYSLLINGL  478 (625)
Q Consensus       408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~  478 (625)
                      |.+.|++++|...++++.+..+. +...+..+...+...++.++|+..++.+......++..         .+......+
T Consensus       505 ~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l  583 (1157)
T PRK11447        505 LRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL  583 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence            88999999999999988765322 44444444455667788888888887764432222211         123445667


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112          479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  558 (625)
                      ...|+.++|..+++.     .+++...+..++..+.+.|++++|+..|+++.+. -+.+...+..++.++...|++++|+
T Consensus       584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            788888888888762     2456667778888888999999999999998886 3556888888999999999999999


Q ss_pred             HHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 038112          559 EIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCR  602 (625)
Q Consensus       559 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  602 (625)
                      +.++.+.+  ..| +...+..+..++...|++++|.+++++++..
T Consensus       658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            99998877  555 4466677778888889999999999988764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4.2e-31  Score=284.67  Aligned_cols=567  Identities=12%  Similarity=0.046  Sum_probs=341.9

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHH----------------HHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLF----------------HHILRRLIDPKLVVHVSRILELIEIQKC   69 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~   69 (625)
                      ..+++++..+|++++|.+.++.+.+..  |.++...                ..++..+...|++++|.+.|+.+++.++
T Consensus        66 ~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p  143 (1157)
T PRK11447         66 AARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAP  143 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC
Confidence            345677788889999999988888777  6665543                3445577788899999999988888765


Q ss_pred             CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCC---------
Q 038112           70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKP---------  133 (625)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~---------  133 (625)
                      +................|++++|+..++++.+.+|..+.+       +...|++++|+..|+++.......         
T Consensus       144 ~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~  223 (1157)
T PRK11447        144 PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYG  223 (1157)
T ss_pred             CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence            4322222122222335688888999998888888877766       667788888888888876532100         


Q ss_pred             -------CHh---HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112          134 -------DVY---SYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY  203 (625)
Q Consensus       134 -------~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  203 (625)
                             +..   .+...+..+-.......|...+.........|... .......+...|++++|+..|++..+..  +
T Consensus       224 ~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P  300 (1157)
T PRK11447        224 QIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN--P  300 (1157)
T ss_pred             HHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence                   000   00000000000011122222232222211111110 1122333444455555555555544432  2


Q ss_pred             CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh-hhH------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS-FTY------------CSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      .+..++..+..++.+.|++++|+..|++..+..+.... ..+            ......+...|++++|+..|+++++.
T Consensus       301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            23344444445555555555555555544433221110 000            01122334445555555555555444


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH----------------------------------
Q 038112          271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL----------------------------------  316 (625)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----------------------------------  316 (625)
                      .+ .+...+..+..++...|++++|++.|+++.+..|.+..++..+                                  
T Consensus       381 ~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l  459 (1157)
T PRK11447        381 DN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL  459 (1157)
T ss_pred             CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            22 1334444444455555555555555555554444444444444                                  


Q ss_pred             --------HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112          317 --------IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNR  388 (625)
Q Consensus       317 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~  388 (625)
                              ...+...|++++|+..|++..+..+. +...+..+...+...|++++|...++                  .
T Consensus       460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~------------------~  520 (1157)
T PRK11447        460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMR------------------R  520 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH------------------H
Confidence                    44444555555555555555554322 33444445555555555555555555                  5


Q ss_pred             HhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---------hHHHHHHHHhccCCHHHHHHHHHHH
Q 038112          389 MDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV---------SYNTLINGLCKVERFGEAYSFVKEM  459 (625)
Q Consensus       389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~  459 (625)
                      +.... +.++..+..+...+...++.++|...++.+......++..         .+......+...|+.++|..+++. 
T Consensus       521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-  598 (1157)
T PRK11447        521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-  598 (1157)
T ss_pred             HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence            55433 2245555556666788999999999998875432222221         123456678889999999999872 


Q ss_pred             HHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH
Q 038112          460 LEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLV  539 (625)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  539 (625)
                          .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|.+.++.+.+. .+.+..
T Consensus       599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~  672 (1157)
T PRK11447        599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLN  672 (1157)
T ss_pred             ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChH
Confidence                34566677888999999999999999999999874 457889999999999999999999999998875 234567


Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCC
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERL--RP---DIISYNITLKGLCSCSRMSDAFEFLNDALC-RGIL  605 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~  605 (625)
                      ++..++.++...|++++|.+++++++...-  .|   +...+..+...+...|++++|+..|++.+. .|+.
T Consensus       673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~  744 (1157)
T PRK11447        673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT  744 (1157)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence            788899999999999999999999988321  11   224566778889999999999999999973 3443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=100.00  E-value=9.4e-27  Score=238.96  Aligned_cols=566  Identities=12%  Similarity=0.026  Sum_probs=387.7

Q ss_pred             HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112           10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP   89 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (625)
                      ..+...|++++|+..|+.+++.+  |.++.++..++..+...|++++|+..++++++..| .+...+..++..    +++
T Consensus        52 ~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i----~~~  124 (987)
T PRK09782         52 LKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAI----PVE  124 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHh----ccC
Confidence            33445699999999999999988  99999999999999999999999999999999874 455555555333    999


Q ss_pred             hHHHHHHHHhHHhhCCCcchh------------hhcCChHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHhcCChhhHHH
Q 038112           90 DKALDVFQRMNEIFGCEAGIL------------CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV-INGLVKSGDLLGALA  156 (625)
Q Consensus        90 ~~A~~~~~~~~~~~~~~~~~~------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~  156 (625)
                      ++|..+++++....|....++            ..-.++++|.+.++ .......|+..+.... ...|.+.+++++|+.
T Consensus       125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~  203 (987)
T PRK09782        125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT  203 (987)
T ss_pred             hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            999999999999999988882            12456678888777 3333333345544444 889999999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          157 VFDEMFERGVETNVVCYNILIDGFFK-KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      .+.++.+.++. +......+...|.. .++ +++..++...     ...+...+..++..+.+.|+.++|.++++++...
T Consensus       204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~-----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~  276 (987)
T PRK09782        204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG-----IFTDPQSRITYATALAYRGEKARLQHYLIENKPL  276 (987)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh-----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence            99999999643 56667778888887 466 7777775531     3457888999999999999999999999998653


Q ss_pred             CCC-CChhhHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 038112          236 ERE-KDSFTYCSF------------------------------IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMID  284 (625)
Q Consensus       236 ~~~-~~~~~~~~l------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  284 (625)
                      ... |...++..+                              +..+.+.++++.++++.      ...|.......-..
T Consensus       277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~  350 (987)
T PRK09782        277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYA  350 (987)
T ss_pred             ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHh
Confidence            222 333333222                              33344455555444331      12333333211112


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC--
Q 038112          285 GFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK-N-CNADSTTHGVLINGLCKNGY--  360 (625)
Q Consensus       285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~--  360 (625)
                      .....+...++...+..+.+..+.+......+.......|+.++|.++++..... + ..++......++..|...+.  
T Consensus       351 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  430 (987)
T PRK09782        351 VSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA  430 (987)
T ss_pred             hccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence            2224477888888888888887888888888888999999999999999988873 1 22333344466777776655  


Q ss_pred             -HHHHHHHH-------------------------HHHHhcC-----------------CCchHHHHHHHHHHhhCCCCcc
Q 038112          361 -LNKAIQIL-------------------------NEVEEGG-----------------EGRLADAASLVNRMDKHGCKLN  397 (625)
Q Consensus       361 -~~~a~~~~-------------------------~~~~~~~-----------------~~~~~~a~~~~~~~~~~~~~~~  397 (625)
                       ...+..+.                         .......                 .++..+|+..+.......  |+
T Consensus       431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd  508 (987)
T PRK09782        431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PD  508 (987)
T ss_pred             chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--Cc
Confidence             33333221                         1111110                 123344555444444432  33


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112          398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING  477 (625)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  477 (625)
                      ......+...+...|++++|...|+++...  +|+...+..+..++.+.|++++|...+++.++.. ++....+..+...
T Consensus       509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~  585 (987)
T PRK09782        509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ  585 (987)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            333333344445777888888887776554  3344445556666777788888888887777653 2222233333334


Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112          478 LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       478 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  557 (625)
                      ....|++++|...+++.++.  .|+...+..++.++.+.|++++|...+++..... +.+...++.++.++...|++++|
T Consensus       586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            44558888888888887775  4567777777788888888888888888887752 44577777788888888888888


Q ss_pred             HHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112          558 LEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT  608 (625)
Q Consensus       558 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  608 (625)
                      +..++++++  ..| +...+..+..++...|++++|...+++.++  +.|+.
T Consensus       663 i~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~  710 (987)
T PRK09782        663 REMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ  710 (987)
T ss_pred             HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence            888888887  566 456777777888888888888888888875  33543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-27  Score=228.68  Aligned_cols=555  Identities=15%  Similarity=0.109  Sum_probs=414.8

Q ss_pred             ChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHH
Q 038112           17 NPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVF   96 (625)
Q Consensus        17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   96 (625)
                      +.+.|.+.|..++++.  |++...+..-++.....++|..|..+|..++..+|...+++...++.++.+.|+.+.|+..|
T Consensus       145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~  222 (1018)
T KOG2002|consen  145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF  222 (1018)
T ss_pred             cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence            3689999999999988  99999999999999999999999999999999998888889999999999999999999999


Q ss_pred             HHhHHhhCCCcchhh----------hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           97 QRMNEIFGCEAGILC----------RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        97 ~~~~~~~~~~~~~~~----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      .++.+..|....+++          ....+..+..++......+ +.++.+.+.|...+.-.|++..++.+...++....
T Consensus       223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~  301 (1018)
T KOG2002|consen  223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE  301 (1018)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence            999999997777622          2345777888888887776 67889999999999999999999999999987632


Q ss_pred             --CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112          167 --ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-VVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT  243 (625)
Q Consensus       167 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  243 (625)
                        ..-...|..++++|...|++++|...|.+..+..  +.+ +..+..+++.+.+.|+.+.+...|+.+.+..+ .+..+
T Consensus       302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~et  378 (1018)
T KOG2002|consen  302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYET  378 (1018)
T ss_pred             hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHH
Confidence              1234568999999999999999999999988764  222 45567788999999999999999999998754 46677


Q ss_pred             HHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcCCCcHHHHH
Q 038112          244 YCSFIHGLCKAG----NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG-----RKGCLNVVSYN  314 (625)
Q Consensus       244 ~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  314 (625)
                      ...+...|...+    ..+.|..++.+.++.- +.|...|..+..++....-+.. +..|..+.     ...+..+...|
T Consensus       379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN  456 (1018)
T KOG2002|consen  379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN  456 (1018)
T ss_pred             HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence            777777777765    4677888888877764 3478888888888766554433 66665544     22335889999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112          315 ILIRGLLENGKVDEAISIWELLREK---NCNADS------TTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL  385 (625)
Q Consensus       315 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~  385 (625)
                      .++..+...|+++.|...|......   ...+|.      .+-..+...+-..++++.|.+.+..+.+..++-       
T Consensus       457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y-------  529 (1018)
T KOG2002|consen  457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY-------  529 (1018)
T ss_pred             hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh-------
Confidence            9999999999999999999988766   222233      234456667777889999999998665443221       


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CC
Q 038112          386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK-GW  464 (625)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~  464 (625)
                                  ...|..++......+...+|...+..+...+ ..++..+..+...+.....+.-|..-|....+. ..
T Consensus       530 ------------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~  596 (1018)
T KOG2002|consen  530 ------------IDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST  596 (1018)
T ss_pred             ------------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence                        2222333322233456667777777766543 235556666666676666666666655554443 12


Q ss_pred             CCCHhhHHHHHHHHh------------ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          465 KPDMITYSLLINGLC------------QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       465 ~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      .+|..+...|.+.|.            ..+..++|+++|.++++.. +-|...-+.++-+++..|++.+|..+|.+..+.
T Consensus       597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA  675 (1018)
T ss_pred             CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence            345555555555443            2234567778887777764 446677777777888888888888888888776


Q ss_pred             CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          533 NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL-RPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       533 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      . ..+..+|.+++.+|...|++..|++.|+..++.-. .-+..+...|.+++++.|.+.+|.+.+.....
T Consensus       676 ~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  676 T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3 23566777888888888888888888888777422 33667777888888888888888888777765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=1.4e-24  Score=223.11  Aligned_cols=556  Identities=10%  Similarity=0.014  Sum_probs=397.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH---
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA---   82 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---   82 (625)
                      ..|++.+..+|++++|+..++.+++.+  |.+...+..++..    +++++|..+|+++++..| .+.+++..++..   
T Consensus        82 ~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~  154 (987)
T PRK09782         82 LYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVG  154 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhc
Confidence            467899999999999999999999988  8777777766443    999999999999999974 578888888876   


Q ss_pred             -----HHccCCchHHHHHHHHhHHhhCCCc-------chhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cC
Q 038112           83 -----YGKNSMPDKALDVFQRMNEIFGCEA-------GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK-SG  149 (625)
Q Consensus        83 -----~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  149 (625)
                           |.+.+...++++  .+.....|...       .+|.+.|++++|+..++++.+.+ +.+......+..++.. .+
T Consensus       155 ~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~  231 (987)
T PRK09782        155 QNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQL  231 (987)
T ss_pred             cchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhC
Confidence                 766655555555  22222222221       12778999999999999999987 5566667777777777 46


Q ss_pred             ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchH--------------------
Q 038112          150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTY--------------------  209 (625)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------------  209 (625)
                      + +.+..++...    ++.++..+..++..+.+.|+.++|.++++.+.....-.|...+|                    
T Consensus       232 ~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~  306 (987)
T PRK09782        232 D-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV  306 (987)
T ss_pred             H-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence            6 7777775532    33578889999999999999999999988865442122222221                    


Q ss_pred             ----------HHHHHHHHhcCChhhHHHHHHH-----------------------------HHhCCCCCChhhHHHHHHH
Q 038112          210 ----------NVMINGLCKCGRFDECLEMWDR-----------------------------MKKNEREKDSFTYCSFIHG  250 (625)
Q Consensus       210 ----------~~l~~~~~~~g~~~~a~~~~~~-----------------------------~~~~~~~~~~~~~~~l~~~  250 (625)
                                ..++..+.+.++++.+.++..-                             |.+.. +-+......+.-.
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~  385 (987)
T PRK09782        307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQ  385 (987)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence                      1224556667777755554321                             00000 0122222222233


Q ss_pred             HHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHhcCC---HHHH-------------------------HHHHH
Q 038112          251 LCKAGNVEGAERVYREMVES-G-IFVDAVTYNAMIDGFCRAGK---IKEC-------------------------FELWE  300 (625)
Q Consensus       251 ~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a-------------------------~~~~~  300 (625)
                      ..+.|+.++|.++|+..... + -.++......++..|.+.+.   ..++                         .+.+.
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            45677788888888877662 1 12233444466677766654   2222                         22233


Q ss_pred             HHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112          301 VMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR  378 (625)
Q Consensus       301 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  378 (625)
                      ......|.  +..+|..+..++.. ++.++|+..+.+.....  |+......+...+...|++++|...+++        
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk--------  534 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK--------  534 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence            33344455  77788888888876 78888888787777663  4444443445555688888888888873        


Q ss_pred             hHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112          379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE  458 (625)
Q Consensus       379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  458 (625)
                                +...  +|+...+..+...+.+.|+++.|...+++..+..+. ....+..+.......|++++|...+++
T Consensus       535 ----------a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~  601 (987)
T PRK09782        535 ----------ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTR  601 (987)
T ss_pred             ----------Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                      3332  333445667778889999999999999999886422 233333344444566999999999999


Q ss_pred             HHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112          459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL  538 (625)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  538 (625)
                      .++.  .|+...+..+..++.+.|++++|...+++.+... +.+...++.++.++...|++++|+..+++..+. .|.+.
T Consensus       602 AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~  677 (987)
T PRK09782        602 SLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDP  677 (987)
T ss_pred             HHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCH
Confidence            9985  5678889999999999999999999999999974 446788899999999999999999999999986 35568


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      ..+..++.++...|++++|+..++++++  +.|+. .+.........+..+++.|.+-+++...  +.|+..
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~  745 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS  745 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence            8999999999999999999999999999  78865 6666777778888888888888887764  334443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-26  Score=208.62  Aligned_cols=437  Identities=16%  Similarity=0.140  Sum_probs=329.2

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      +.|+|++|++.-..+...+ +.+....-.+...+....+.+....--...++.. +.-..+|..+++.+-..|+++.|+.
T Consensus        60 q~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~  137 (966)
T KOG4626|consen   60 QGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALA  137 (966)
T ss_pred             hccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHH
Confidence            3444444444444444433 2222223333344445555555444444444432 3356778888888888888888888


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF-TYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      .|+.+++..  +..+..|..+..++...|+.+.|.+.|.+.++.+  |+.. ....+....-..|+.++|...|-+.++.
T Consensus       138 ~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~  213 (966)
T KOG4626|consen  138 LYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET  213 (966)
T ss_pred             HHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh
Confidence            888888763  4566778888888888888888888888877553  2222 2233444455578888888888888775


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 038112          271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV  350 (625)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  350 (625)
                      .+. -...|..|...+..+|+...|+..|++..+.+|.-..+|..|..+|...+.++.|+..|.+.....+. ....+..
T Consensus       214 qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gN  291 (966)
T KOG4626|consen  214 QPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGN  291 (966)
T ss_pred             CCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccc
Confidence            321 34567788888888888888888888888888888888888888888888899888888888776322 4555666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          351 LINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       351 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      +...|...|..+.|+..+++..                  ... +.-+..|+.+..++...|+..+|.+.|.+.....+.
T Consensus       292 la~iYyeqG~ldlAI~~Ykral------------------~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~  352 (966)
T KOG4626|consen  292 LACIYYEQGLLDLAIDTYKRAL------------------ELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN  352 (966)
T ss_pred             eEEEEeccccHHHHHHHHHHHH------------------hcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence            7777888888888888888533                  221 224567899999999999999999999999887433


Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD-VTMYNI  508 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~  508 (625)
                       ...+.+.+...+...|.+++|..+|....+  +.|. ...++.+...|.+.|++++|+..+++.+.  +.|+ ...++.
T Consensus       353 -hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~N  427 (966)
T KOG4626|consen  353 -HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSN  427 (966)
T ss_pred             -cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHh
Confidence             566888999999999999999999999988  4555 46788999999999999999999999998  4665 678999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 038112          509 LIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLC  584 (625)
Q Consensus       509 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~  584 (625)
                      ++..|...|+.+.|+..+.+++..  .|. ...++.|+..|...|+..+|++-|+++++  ++||. ..+..++.++.
T Consensus       428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence            999999999999999999999984  454 77889999999999999999999999999  89976 67777766543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.1e-23  Score=202.03  Aligned_cols=584  Identities=14%  Similarity=0.060  Sum_probs=438.2

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHH
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL--VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDV   95 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~   95 (625)
                      +..|...|+.+-+.+  ......+..-...|...|.  ++.|...|..+++.+|+ +.-.+..-+......++|..|..+
T Consensus       110 ~~~at~~~~~A~ki~--m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~y  186 (1018)
T KOG2002|consen  110 FDKATLLFDLADKID--MYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKY  186 (1018)
T ss_pred             HHHHHHHhhHHHHhh--ccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHH
Confidence            456888888876655  4445555554545555554  59999999999998743 544444455556788999999999


Q ss_pred             HHHhHHhhCCCcc-h-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 038112           96 FQRMNEIFGCEAG-I-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG---DLLGALAVFDEMFER  164 (625)
Q Consensus        96 ~~~~~~~~~~~~~-~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~  164 (625)
                      |..++...|.... .       +.+.|+.+.|+..|+++++.+ |.++.++..|...-....   .+..+...+......
T Consensus       187 yk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~  265 (1018)
T KOG2002|consen  187 YKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE  265 (1018)
T ss_pred             HHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh
Confidence            9998765554322 2       678999999999999999987 455666666555444443   355677777777766


Q ss_pred             CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112          165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT  243 (625)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  243 (625)
                      + +-++...+.|...|...|++..+..+...+....... --...|.-+.++|-..|++++|..+|.+..+.........
T Consensus       266 n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~  344 (1018)
T KOG2002|consen  266 N-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP  344 (1018)
T ss_pred             c-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence            4 3488999999999999999999999998887653111 1123577889999999999999999999887654322445


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG----KIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      +..+.+.+...|+++.+...|+.+.+.. +.+..+...+...|...+    ..+.|..++.......+.+..+|..+...
T Consensus       345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql  423 (1018)
T KOG2002|consen  345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL  423 (1018)
T ss_pred             ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            6678899999999999999999999874 336788888888888775    56888889999888888899999999988


Q ss_pred             HHhCCCHHHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh-hCCC
Q 038112          320 LLENGKVDEAISIWELLR----EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD-KHGC  394 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~  394 (625)
                      +-...-+.. +..|..+.    ..+-.+.+...+.+...+...|++..|...|......-.          ..+. ..+-
T Consensus       424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~----------~~~n~de~~  492 (1018)
T KOG2002|consen  424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL----------EVANKDEGK  492 (1018)
T ss_pred             HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh----------hhcCccccc
Confidence            876654444 77666544    445557888999999999999999999999986554310          0000 0111


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 038112          395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPT-VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSL  473 (625)
Q Consensus       395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  473 (625)
                      .++..+-..+..+.-..++.+.|.+.|..+.+..  |. +..|..++......+...+|...+.+.... ...++..+..
T Consensus       493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl  569 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSL  569 (1018)
T ss_pred             cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHH
Confidence            2333344556677778899999999999999863  33 335555554444567888999999998875 3446667777


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112          474 LINGLCQSKKIDMALKLCCQFLQK-GFTPDVTMYNILIHGLCS------------AGKVEDALQLYSNMKKRNCVPNLVT  540 (625)
Q Consensus       474 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~  540 (625)
                      ++..+.+...+..|.+-|..+.+. ...+|+.+...|+..|..            .+..++|+.+|.++++. -|.|...
T Consensus       570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yA  648 (1018)
T KOG2002|consen  570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYA  648 (1018)
T ss_pred             HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccchhhh
Confidence            777888888888888877776653 123577777777776653            34578899999999987 3668888


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC-RGILPTTITWHILVRAVM  619 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~  619 (625)
                      -+.++-+++..|++.+|+.+|.++.+.. .-...+|-.++++|..+|++..|+++|+...+ .+-..+..+...|..++.
T Consensus       649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y  727 (1018)
T KOG2002|consen  649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY  727 (1018)
T ss_pred             ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            8999999999999999999999999953 33567899999999999999999999999875 444567778888888888


Q ss_pred             hcCC
Q 038112          620 NNGA  623 (625)
Q Consensus       620 ~~g~  623 (625)
                      ++|.
T Consensus       728 ~~~~  731 (1018)
T KOG2002|consen  728 EAGK  731 (1018)
T ss_pred             Hhhh
Confidence            7764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-25  Score=202.65  Aligned_cols=465  Identities=16%  Similarity=0.092  Sum_probs=279.2

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112           14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL   93 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   93 (625)
                      ++-+...+-.+.++-...   +........++..+.+.|++++|++....+-.++ +.+......+...++...+++...
T Consensus        27 ~~~~s~~s~~v~qq~~~t---~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~  102 (966)
T KOG4626|consen   27 QSVSSSGSSSVLQQFNKT---HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSS  102 (966)
T ss_pred             cCcccccchHHHHHhccC---CccchhHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhh
Confidence            333334444444443222   3344446778888889999999999888887776 446666667777888888888776


Q ss_pred             HHHHHhHHhhCCC-------cchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           94 DVFQRMNEIFGCE-------AGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        94 ~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      ..-....+..+..       ..++...|++++|+.+++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++.+ 
T Consensus       103 a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-  180 (966)
T KOG4626|consen  103 AGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-  180 (966)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-
Confidence            6555443333322       222445566666666666666554 3345556666666666666666666666665542 


Q ss_pred             CCCch-hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112          167 ETNVV-CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC  245 (625)
Q Consensus       167 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  245 (625)
                       |+.. ....+...+...|++++|...|.+.++..  +.-..+|..|.-.+...|+.-.|+..|++..+..+ .-...|.
T Consensus       181 -P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYi  256 (966)
T KOG4626|consen  181 -PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYI  256 (966)
T ss_pred             -cchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHh
Confidence             2222 22334444445566666666666555542  22334566666666666666666666666554432 1234455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112          246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (625)
                      .|...|...+.++.|+..|.+.+...+ .....+..+...|..+|.++.|+..|++.....|.-+.+|+.|..++...|+
T Consensus       257 NLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~  335 (966)
T KOG4626|consen  257 NLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS  335 (966)
T ss_pred             hHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc
Confidence            555666666666666666655554421 1344455555555566666666666666665555555566666666666666


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112          326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM  405 (625)
Q Consensus       326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  405 (625)
                      +.+|...|.+.+...+.                                                      .+...+.+.
T Consensus       336 V~ea~~cYnkaL~l~p~------------------------------------------------------hadam~NLg  361 (966)
T KOG4626|consen  336 VTEAVDCYNKALRLCPN------------------------------------------------------HADAMNNLG  361 (966)
T ss_pred             hHHHHHHHHHHHHhCCc------------------------------------------------------cHHHHHHHH
Confidence            66666655555544221                                                      233445555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCH
Q 038112          406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKI  484 (625)
Q Consensus       406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  484 (625)
                      ..|...|.++.|..+|....+..+. -....+.+...|.+.|++++|+..+++.+.  +.|+ ...++.+...|-..|+.
T Consensus       362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence            5566666666666666655543111 233566677777777777777777777776  5565 35677777778888888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 038112          485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLF  549 (625)
Q Consensus       485 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~  549 (625)
                      +.|.+.+.+.+..+ +.-...++.|+..|-..|+..+|+.-|+...+  ++|| +..+..++.+..
T Consensus       439 ~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq  501 (966)
T KOG4626|consen  439 SAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ  501 (966)
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence            88888888877753 22356778888888888888888888888887  4555 556666665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.94  E-value=7.8e-21  Score=181.55  Aligned_cols=588  Identities=11%  Similarity=0.065  Sum_probs=405.9

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      |+.+..+|++++|..++..+++++  |..+.+|..|+..|-..|+.+.+...+-.+...+|. +.+.|..+.....++|.
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhccc
Confidence            467778899999999999999999  999999999999999999999999999888888754 77999999999999999


Q ss_pred             chHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHHhcCChhhHHHH
Q 038112           89 PDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYS----YGTVINGLVKSGDLLGALAV  157 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~  157 (625)
                      ++.|+-.|.++.+..|.....       |-+.|+...|...|.++.....+.|..-    -..+++.+...++.+.|++.
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999988877665       6778999999999999998863222222    22345566677878999999


Q ss_pred             HHHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------------CCCCCcchHH
Q 038112          158 FDEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET--------------------------SVYPNVVTYN  210 (625)
Q Consensus       158 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~  210 (625)
                      ++..... +-..+...++.++..+.+...++.+...........                          ...++..+ -
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~  381 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I  381 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence            9988873 223456678889999999999999988777665511                          01222222 1


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          211 VMINGLCKCGRFDECLEMWDRMKKNE--REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       211 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      .++-++.+....+....+...+.+..  +.-++..|..+..++...|.+.+|+.+|..+......-+...|..++++|..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence            22334444444444444444444444  4456678999999999999999999999999988666678899999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCC
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK--------NCNADSTTHGVLINGLCKNGY  360 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~  360 (625)
                      .|.++.|.+.|..+....|.+..+...|...+.+.|+.++|.+.+..+...        ...|+..........+...|+
T Consensus       462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK  541 (895)
T ss_pred             HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999886522        233444444555667777888


Q ss_pred             HHHHHHHHHHHHhcC----------------------CCchHHHHHHHHHH-----------------------hhCCCC
Q 038112          361 LNKAIQILNEVEEGG----------------------EGRLADAASLVNRM-----------------------DKHGCK  395 (625)
Q Consensus       361 ~~~a~~~~~~~~~~~----------------------~~~~~~a~~~~~~~-----------------------~~~~~~  395 (625)
                      .++=..+...+....                      ......-......+                       ...+..
T Consensus       542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls  621 (895)
T KOG2076|consen  542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS  621 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence            776544444333211                      00011111111111                       111111


Q ss_pred             ccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChh----hHHHHHHHHhccCCHHHHHHHHHHHHHC-CC--C
Q 038112          396 LNA--YTCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PTVV----SYNTLINGLCKVERFGEAYSFVKEMLEK-GW--K  465 (625)
Q Consensus       396 ~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~  465 (625)
                      .+.  ..+..++..+++.+++++|..+...+.....- .+..    .-...+.+....+++..|...++.++.. +.  .
T Consensus       622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~  701 (895)
T KOG2076|consen  622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD  701 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence            111  23455667788888899998888887764211 1111    1234455566788899999988888764 11  1


Q ss_pred             CC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112          466 PD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTL  544 (625)
Q Consensus       466 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  544 (625)
                      |. ...|+.......+.++-.--...+..+.......+.......+.....++.+..|+..+-++...+ |.++.+-..+
T Consensus       702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl~nl~l  780 (895)
T KOG2076|consen  702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPLINLCL  780 (895)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcHHHHHH
Confidence            11 223443444555555443334444444433222223333334455667888999999888887752 3334444444


Q ss_pred             HHHHHc----------cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          545 MDGLFK----------TGDCDKALEIWNHILEERLR-PDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       545 ~~~~~~----------~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +-++..          +-..-++..++.+..+.... -..+++..++++|...|-..-|..+|++.++
T Consensus       781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~  848 (895)
T KOG2076|consen  781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE  848 (895)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence            444432          11234566666666663211 1457889999999999999999999999995

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.94  E-value=1.3e-21  Score=198.56  Aligned_cols=432  Identities=13%  Similarity=-0.021  Sum_probs=302.7

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      ..+..+...|+++.|+..|+.++...  | ++..|..++.++.+.|++++|++.+..+++.+ |.+...+..++.+|...
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence            56788899999999999999999876  4 47788999999999999999999999999987 45788999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      |++++|+..|..+....+.....   .....-...+.......+... +++...+..+.. +...........-+....+
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence            99999999887764432222111   111111123333334444332 223223333322 2222222222222222222


Q ss_pred             CCCCCCchhhHHHHHHH---HhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          164 RGVETNVVCYNILIDGF---FKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      .... ....+..+...+   ...+++++|.+.|+.....+...| ....+..+..++...|++++|+..+++.....+ .
T Consensus       286 ~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~  363 (615)
T TIGR00990       286 LDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-R  363 (615)
T ss_pred             cccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Confidence            1111 111222222211   234789999999999987643333 445688888999999999999999999987653 3


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      ....|..+...+...|++++|+..|+++++..+ .+..++..+...+...|++++|+..|+......|.+...+..++.+
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            466788889999999999999999999988753 3688999999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH-
Q 038112          320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA-  398 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  398 (625)
                      +.+.|++++|+..|+......+ .+...+..+...+...|++++|...+++.....+...             ....+. 
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~-------------~~~~~~~  508 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETK-------------PMYMNVL  508 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccc-------------cccccHH
Confidence            9999999999999999988743 2677888899999999999999999996443221100             000011 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                      ..++..+..+...|++++|..++++.....+ .+...+..+..++.+.|++++|+..|++..+.
T Consensus       509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       509 PLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            1122222333445778888888877766532 23345667777777777777777777777653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.93  E-value=2.7e-19  Score=164.62  Aligned_cols=573  Identities=14%  Similarity=0.065  Sum_probs=364.5

Q ss_pred             CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHH
Q 038112           16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDV   95 (625)
Q Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~   95 (625)
                      ++...|..++..+.+.+  |.+|..|.+-++.--..|++..|..+...--.. ++.+.++|...++.    .-.+.|..+
T Consensus       265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRL----hp~d~aK~v  337 (913)
T KOG0495|consen  265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRL----HPPDVAKTV  337 (913)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhc----CChHHHHHH
Confidence            45678999999988888  889999998888888899999999888877766 46688888776654    467778888


Q ss_pred             HHHhHHhhCCCcchhhhcCChHH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCch
Q 038112           96 FQRMNEIFGCEAGILCRKRQFEK----AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV  171 (625)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  171 (625)
                      ........|..+.++++.-+++.    =..++++.++.- |.++..|...+    ...+.+.|.-++.++.+. ++.+..
T Consensus       338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d  411 (913)
T KOG0495|consen  338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD  411 (913)
T ss_pred             HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH
Confidence            88888888888888766655443    345777777763 55666665543    355666688888887776 444444


Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHH----HhCCCCCChhhHHHH
Q 038112          172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM----KKNEREKDSFTYCSF  247 (625)
Q Consensus       172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l  247 (625)
                      .|.    ++.+..-|+.|..++....+.  ++.+...|.+-...--.+|+.+...+++++-    ...|+..+...|..=
T Consensus       412 Lwl----AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e  485 (913)
T KOG0495|consen  412 LWL----ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE  485 (913)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence            444    444556677888888877765  6667777777777777778887777776653    345667777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (625)
                      ...|-..|..-.+..+....+..|+.-.  ..+|..-...|.+.+.++-|..+|....+..|.....|...+..--..|.
T Consensus       486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt  565 (913)
T KOG0495|consen  486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT  565 (913)
T ss_pred             HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence            7777777777777777777777665432  35667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------CCchHHHHHHHHHH
Q 038112          326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----------------EGRLADAASLVNRM  389 (625)
Q Consensus       326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------~~~~~~a~~~~~~~  389 (625)
                      .+....++.++...-++ ....|......+...|+...|..++..+....                ...++.|..++.+.
T Consensus       566 ~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka  644 (913)
T KOG0495|consen  566 RESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA  644 (913)
T ss_pred             HHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            77777777777776332 44445555566667777777777777544322                22233333333333


Q ss_pred             hhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 038112          390 DKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM  468 (625)
Q Consensus       390 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  468 (625)
                      ..  ..++..+|..-+..-.-.+..++|.+++++..+.  -|+- ..|..+.+.+.+.++.+.|...|..-.+. ++...
T Consensus       645 r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i  719 (913)
T KOG0495|consen  645 RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI  719 (913)
T ss_pred             hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence            22  2334444444444444445555555555555443  1222 24444455555555555555555444432 22333


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      ..|..+...-.+.|++-+|..++++..-++ +-+...|...+++-.+.|+.+.|..+..++.+. ++.+...|..-+...
T Consensus       720 pLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le  797 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLE  797 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhc
Confidence            344444444455555555555555555443 234555555555555555555555555555544 444444455444444


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038112          549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT-ITWHILVRAVMNNG  622 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g  622 (625)
                      -+.++-......+++     ..-|+.+...+...+....++++|+++|++.++  +.||. .+|.-+.....++|
T Consensus       798 ~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  798 PRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG  865 (913)
T ss_pred             cCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence            444443333333322     334666677777778888888888888888885  34654 67777777777777

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=7e-21  Score=193.24  Aligned_cols=91  Identities=14%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038112          139 GTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK  218 (625)
Q Consensus       139 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (625)
                      ......+.+.|+++.|+..|+++++.  .|++..|..+..+|.+.|++++|++.+...++..  +.+..+|..+..++..
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence            33444555556666666666655544  2344555555555666666666666665555542  3334455555555666


Q ss_pred             cCChhhHHHHHHHHH
Q 038112          219 CGRFDECLEMWDRMK  233 (625)
Q Consensus       219 ~g~~~~a~~~~~~~~  233 (625)
                      .|++++|+..|..+.
T Consensus       207 lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       207 LGKYADALLDLTASC  221 (615)
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666666655554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=9.2e-22  Score=198.44  Aligned_cols=375  Identities=11%  Similarity=0.072  Sum_probs=267.0

Q ss_pred             HHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112           10 NLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      ..+.+|.+|+.-.-+|...-+... ...+......++..+.+.|++.+|..+++.++...+ .+.+.+..++.+....|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~   91 (656)
T PRK15174         13 TTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQ   91 (656)
T ss_pred             hhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCC
Confidence            456677788877777776544321 234445556667777788888888888888888764 356666666677777888


Q ss_pred             chHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           89 PDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      +++|...|+++....|..+.+       +...|++++|+..|++++... |.+...+..++..+...|++++|...++.+
T Consensus        92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            888888888888877777665       667788888888888887764 556677777888888888888888888877


Q ss_pred             HhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh
Q 038112          162 FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS  241 (625)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  241 (625)
                      ....+. +...+..+ ..+...|++++|...++.+.+.. ..++...+..++..+...|++++|+..++++....+ .+.
T Consensus       171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~  246 (656)
T PRK15174        171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGA  246 (656)
T ss_pred             HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence            665332 33333333 34677888888888888876653 122333444556677788888888888888877653 356


Q ss_pred             hhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEG----AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI  317 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  317 (625)
                      ..+..+...+...|++++    |...|+++++..+. +...+..+...+...|++++|+..++.+....|.+..++..+.
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La  325 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            677778888888888775    78888888776433 6677778888888888888888888888888877888888888


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHhhC
Q 038112          318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG----EGRLADAASLVNRMDKH  392 (625)
Q Consensus       318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~a~~~~~~~~~~  392 (625)
                      .++...|++++|+..++.+...++. +...+..+..++...|++++|...+++..+..    ...+.++..-+......
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~  403 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISA  403 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHh
Confidence            8888888888888888888776432 22333345667788888888888888877664    34455566655555543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=3.8e-21  Score=193.98  Aligned_cols=327  Identities=12%  Similarity=0.094  Sum_probs=276.3

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++.-+.++|+++.|+..++.++...  |.++.++..++.++...|++++|...++.++...| .+...+..++..+...
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~  123 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence            45566778999999999999988877  88899999999999999999999999999999974 4788899999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      |++++|+..++++....|..+.+       +...|++++|...++++.... +.+...+..+ ..+...|++++|...++
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            99999999999998888877665       778899999999999887765 3344444444 34788999999999999


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhC
Q 038112          160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE----CLEMWDRMKKN  235 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~  235 (625)
                      .+.+....++...+..++..+...|++++|+..++.+....  +.+...+..+...+...|++++    |...|++....
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            98877544445555666788889999999999999998863  5566778889999999999986    89999999877


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 038112          236 EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNI  315 (625)
Q Consensus       236 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  315 (625)
                      .+ .+...+..+...+...|++++|+..+++++...+. +...+..+..++.+.|++++|+..++.+....|.+...+..
T Consensus       280 ~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~  357 (656)
T PRK15174        280 NS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY  357 (656)
T ss_pred             CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            64 46778889999999999999999999999987543 56778888999999999999999999999888877766666


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112          316 LIRGLLENGKVDEAISIWELLREKNCN  342 (625)
Q Consensus       316 l~~~~~~~~~~~~a~~~~~~~~~~~~~  342 (625)
                      +..++...|++++|...|+...+..+.
T Consensus       358 ~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        358 AAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            788899999999999999999887433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.93  E-value=1.9e-22  Score=194.90  Aligned_cols=303  Identities=14%  Similarity=0.082  Sum_probs=227.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcC
Q 038112          283 IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD---STTHGVLINGLCKNG  359 (625)
Q Consensus       283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~  359 (625)
                      ...+...|++++|...|+++....|.+..++..++..+...|++++|..+++.+...+..++   ...+..++..|...|
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            44455667777777777777777776777777777777777777777777777766532221   234566677777788


Q ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hh
Q 038112          360 YLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV----VS  435 (625)
Q Consensus       360 ~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~  435 (625)
                      +++.|..++++                  +... .+.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..
T Consensus       122 ~~~~A~~~~~~------------------~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        122 LLDRAEELFLQ------------------LVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             CHHHHHHHHHH------------------HHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            88888877774                  3322 2335667778888888888888888888888775433221    23


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS  515 (625)
Q Consensus       436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  515 (625)
                      +..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|..
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            4566777788899999999999988753 334567777888899999999999999998875433234567888899999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCChHHH
Q 038112          516 AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCS---CSRMSDA  592 (625)
Q Consensus       516 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A  592 (625)
                      .|++++|...++++.+.  .|+...+..++..+.+.|++++|..+++++++  ..|+...+..++..+..   .|+.+++
T Consensus       262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a  337 (389)
T PRK11788        262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKES  337 (389)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhH
Confidence            99999999999998885  46666678889999999999999999999988  67888888877776664   5688999


Q ss_pred             HHHHHHHHHCCCCCCHH
Q 038112          593 FEFLNDALCRGILPTTI  609 (625)
Q Consensus       593 ~~~~~~~~~~~~~~~~~  609 (625)
                      +.++++|++.++.|++.
T Consensus       338 ~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        338 LLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999877777776

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=8.8e-20  Score=188.44  Aligned_cols=419  Identities=12%  Similarity=0.051  Sum_probs=284.6

Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF  247 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (625)
                      .++......+.+....|+.++|+++|......  .+.+...+..+...+...|++++|..++++.....+ .+...+..+
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l   89 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL   89 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence            34455555666666777777777777776642  133344566777777777777777777777665543 345556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                      +..+...|++++|+..++++++..+. +.. +..+..++...|++++|+..++++....|.+...+..++.++...+..+
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            67777777777777777777765322 445 6667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCchHHHHHHHHHHhhC-
Q 038112          328 EAISIWELLREKNCNADS------TTHGVLINGLC-----KNGYL---NKAIQILNEVEEGGEGRLADAASLVNRMDKH-  392 (625)
Q Consensus       328 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-  392 (625)
                      +|+..++.+..   .|+.      ......+....     ..+++   +.|+..++                  .+... 
T Consensus       168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~------------------~ll~~~  226 (765)
T PRK10049        168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD------------------ALEALW  226 (765)
T ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH------------------HHHhhc
Confidence            77777765443   1111      01111112111     11122   44555555                  33322 


Q ss_pred             CCCccH--H---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112          393 GCKLNA--Y---TCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP  466 (625)
Q Consensus       393 ~~~~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  466 (625)
                      ...|+.  .   .....+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.......
T Consensus       227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~  305 (765)
T PRK10049        227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETI  305 (765)
T ss_pred             ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence            111211  1   1111133456779999999999999887532 222 22235678999999999999999988643111


Q ss_pred             ---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112          467 ---DMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-----------TPD---VTMYNILIHGLCSAGKVEDALQLYSNM  529 (625)
Q Consensus       467 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~  529 (625)
                         .......+..++...|++++|...++.+.....           .|+   ...+..++..+...|++++|+.+++++
T Consensus       306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a  385 (765)
T PRK10049        306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL  385 (765)
T ss_pred             CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence               124456677788999999999999999987521           122   235567788899999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112          530 KKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT  608 (625)
Q Consensus       530 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  608 (625)
                      ... .|.+...+..++..+...|++++|++.++++++  +.|+ ...+...+..+.+.|++++|..+++++++.  .|+.
T Consensus       386 l~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~  460 (765)
T PRK10049        386 AYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD  460 (765)
T ss_pred             HHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence            986 466788999999999999999999999999999  7785 567777788899999999999999999963  4665


Q ss_pred             HHHHHHHHHH
Q 038112          609 ITWHILVRAV  618 (625)
Q Consensus       609 ~~~~~l~~~~  618 (625)
                      .....+-..+
T Consensus       461 ~~~~~~~~~~  470 (765)
T PRK10049        461 PGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHHH
Confidence            5544444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=9.4e-20  Score=188.22  Aligned_cols=420  Identities=10%  Similarity=0.043  Sum_probs=297.4

Q ss_pred             CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112          134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI  213 (625)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  213 (625)
                      +.....-.+......|+.++|++++.+..... +.+...+..++..+...|++++|.+.|+++.+..  |.+...+..++
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la   90 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLI   90 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            33334444555667888888888888877632 3344567778888888888888888888877753  44556677777


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112          214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK  293 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (625)
                      .++...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++++..+. +...+..+..++...+..+
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence            888888888888888888877643 3445 777778888888888888888888876443 5566666777777788888


Q ss_pred             HHHHHHHHHHhcCCCc-----HHHHHHHHHHHHh-----CCCH---HHHHHHHHHHHHc-CCCCChh-hHH----HHHHH
Q 038112          294 ECFELWEVMGRKGCLN-----VVSYNILIRGLLE-----NGKV---DEAISIWELLREK-NCNADST-THG----VLING  354 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~  354 (625)
                      .|++.++.+.. .|..     ......++.....     .+++   ++|+..++.+... ...|+.. .+.    ..+..
T Consensus       168 ~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~  246 (765)
T PRK10049        168 PALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA  246 (765)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence            88888876554 2211     1122222222221     2234   7788888888864 2223221 111    11334


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--
Q 038112          355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK-LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP--  431 (625)
Q Consensus       355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--  431 (625)
                      +...|++++|+..|+                  .+...+.+ |+. ....+...|...|++++|...|+++.......  
T Consensus       247 Ll~~g~~~eA~~~~~------------------~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~  307 (765)
T PRK10049        247 LLARDRYKDVISEYQ------------------RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD  307 (765)
T ss_pred             HHHhhhHHHHHHHHH------------------HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence            567788999999888                  44444322 221 22235778999999999999999988653221  


Q ss_pred             -ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112          432 -TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-----------KPD---MITYSLLINGLCQSKKIDMALKLCCQFLQ  496 (625)
Q Consensus       432 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  496 (625)
                       .......+..++...|++++|..+++.+.....           .|+   ...+..+...+...|++++|+++++++..
T Consensus       308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~  387 (765)
T PRK10049        308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY  387 (765)
T ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             123456667778899999999999999987521           122   22455677788999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112          497 KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISY  576 (625)
Q Consensus       497 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  576 (625)
                      .. +.+...+..++..+...|++++|++.++++.... |.+...+..++..+...|++++|..+++++++  ..|+....
T Consensus       388 ~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~  463 (765)
T PRK10049        388 NA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGV  463 (765)
T ss_pred             hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHH
Confidence            63 5568899999999999999999999999999863 44577888888899999999999999999999  77876655


Q ss_pred             HHHHHHH
Q 038112          577 NITLKGL  583 (625)
Q Consensus       577 ~~l~~~~  583 (625)
                      ..+-+.+
T Consensus       464 ~~~~~~~  470 (765)
T PRK10049        464 QRLARAR  470 (765)
T ss_pred             HHHHHHH
Confidence            5554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=2.4e-21  Score=187.22  Aligned_cols=295  Identities=12%  Similarity=0.073  Sum_probs=194.3

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC-----------cchhhhc
Q 038112           45 LRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE-----------AGILCRK  113 (625)
Q Consensus        45 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~  113 (625)
                      +..+...|++++|...|+++++.+| .+..++..++..+...|++++|...++.+....+..           ...+.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            4445556666666666666666643 345566666666666666666666666654321111           0114455


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc----hhhHHHHHHHHhcCChhHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV----VCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a  189 (625)
                      |++++|+.+|+++.+.+ +++..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..++..+...|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            55555555555555543 455677778888888888888888888888776433221    1344566677778888888


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      ...|+++.+..  +.+...+..++..+.+.|++++|.+.++++...++.....++..++.+|...|++++|...++++.+
T Consensus       200 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        200 RALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888877652  3345567777788888888888888888887654333345567777888888888888888888777


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCChh
Q 038112          270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE---NGKVDEAISIWELLREKNCNADST  346 (625)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~  346 (625)
                      ..  |+...+..++..+.+.|++++|..+++.+.+..|.+. .+..++..+..   .|+.++++.+++.+.+.++.|++.
T Consensus       278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            53  4555557777888888888888888887777654443 45555555443   457778888888888766665554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=2e-18  Score=174.31  Aligned_cols=445  Identities=12%  Similarity=0.061  Sum_probs=303.8

Q ss_pred             HHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChh
Q 038112          144 GLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD  223 (625)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  223 (625)
                      ...+.|+++.|+..|++..+..+.-.+..+ .++..+...|+.++|+..+++....  .+........++..+...|+++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHH
Confidence            356788888888888888776332112233 6777777778888888888887621  1112222233355777778888


Q ss_pred             hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG  303 (625)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  303 (625)
                      +|+++|+++.+..+. ++..+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|++.++++.
T Consensus       120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            888888888877653 4666667778888888888888888888775  3444444444444444566666888888888


Q ss_pred             hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC---
Q 038112          304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---GEG---  377 (625)
Q Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---  377 (625)
                      ...|.+...+..+..++.+.|-...|.++...-... +.  ......+ .       .+.+.+..+.....   ...   
T Consensus       197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l-~-------~~~~a~~vr~a~~~~~~~~~r~~  265 (822)
T PRK14574        197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL-E-------RDAAAEQVRMAVLPTRSETERFD  265 (822)
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH-H-------HHHHHHHHhhcccccccchhhHH
Confidence            888888888888888888888888887666542211 11  1111110 0       00000000000000   000   


Q ss_pred             chHHHHHHHHHHhh-CCCCcc-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHH
Q 038112          378 RLADAASLVNRMDK-HGCKLN-A----YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGE  451 (625)
Q Consensus       378 ~~~~a~~~~~~~~~-~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  451 (625)
                      -.+.+..-++.+.. .+..|. .    ....-.+.++...+++.++++.|+.+...+.+....+-..+..+|...+++++
T Consensus       266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k  345 (822)
T PRK14574        266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK  345 (822)
T ss_pred             HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence            11122222333333 111121 1    12233455678889999999999999988765556678889999999999999


Q ss_pred             HHHHHHHHHHCC-----CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHH
Q 038112          452 AYSFVKEMLEKG-----WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-----------TPD---VTMYNILIHG  512 (625)
Q Consensus       452 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~  512 (625)
                      |+.++..+....     ..++......|..++...+++++|..+++++.+...           .|+   ...+..++..
T Consensus       346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            999999987642     122334457889999999999999999999987311           122   2344556778


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHH
Q 038112          513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSD  591 (625)
Q Consensus       513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~  591 (625)
                      +...|++.+|.+.++++... -|-|..+...++..+...|.+.+|.+.++.+..  +.|+ ..+....+.++...|++.+
T Consensus       426 ~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~  502 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ  502 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence            88999999999999999886 477899999999999999999999999988877  6774 4677788889999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHH
Q 038112          592 AFEFLNDALCRGILPTTIT  610 (625)
Q Consensus       592 A~~~~~~~~~~~~~~~~~~  610 (625)
                      |..+.+++.+.  .|+...
T Consensus       503 A~~~~~~l~~~--~Pe~~~  519 (822)
T PRK14574        503 MELLTDDVISR--SPEDIP  519 (822)
T ss_pred             HHHHHHHHHhh--CCCchh
Confidence            99999999864  355443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=5.8e-18  Score=171.07  Aligned_cols=441  Identities=12%  Similarity=0.083  Sum_probs=279.7

Q ss_pred             hhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          111 CRKRQFEKAKRFLNSLWEKGLKPDV-YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       111 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      .++|+++.|+..|+++++.+ |.+. ..+ .++..+...|+.++|+..+++.... .+........++..+...|++++|
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34444444444444444443 1111 222 5555556667777777776666621 111122222234466666777777


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      +++|+++.+..  |.+...+..++..+...++.++|++.++++....  |+...+..++..+...++..+|++.++++.+
T Consensus       122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            77777766653  3344455555666666677777777776666542  2333333333333334455457777777766


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHH---------hCCC---HHHHHHHHHH
Q 038112          270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY--NILIRGLL---------ENGK---VDEAISIWEL  335 (625)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~~~---~~~a~~~~~~  335 (625)
                      ..+. +...+..+..+..+.|-...|.++...-...-.+....+  ...+.-.+         ...+   .+.|+.-++.
T Consensus       198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~  276 (822)
T PRK14574        198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN  276 (822)
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence            5422 556666666666666666666655554332211111111  00000011         1112   3455555666


Q ss_pred             HHHc-CCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112          336 LREK-NCNADSTT-----HGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI  409 (625)
Q Consensus       336 ~~~~-~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  409 (625)
                      +... +..|....     ..-.+-++...+++.++++.++                  .+...+.+....+-..+..+|.
T Consensus       277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~------------------~l~~~~~~~P~y~~~a~adayl  338 (822)
T PRK14574        277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE------------------AMEAEGYKMPDYARRWAASAYI  338 (822)
T ss_pred             HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH------------------HhhhcCCCCCHHHHHHHHHHHH
Confidence            5542 12232211     2234557778888888888888                  6777776666778899999999


Q ss_pred             hcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CCC--H-hh
Q 038112          410 QASKLENAIFLFKEMSRKGC-----SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-----------KPD--M-IT  470 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~--~-~~  470 (625)
                      ..+++++|..+|.++.....     .++......|..++...+++++|..+++++.+...           .|+  - ..
T Consensus       339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~  418 (822)
T PRK14574        339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG  418 (822)
T ss_pred             hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence            99999999999999976431     22333457888999999999999999999987311           112  1 23


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK  550 (625)
Q Consensus       471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  550 (625)
                      ...++..+...|+..+|.+.++++.... |-|......++..+...|.+.+|...++.+... -+.+..+....+.++..
T Consensus       419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~  496 (822)
T PRK14574        419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMA  496 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHh
Confidence            4456777889999999999999998864 568999999999999999999999999877765 34457788889999999


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112          551 TGDCDKALEIWNHILEERLRPDIISYNITLK  581 (625)
Q Consensus       551 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  581 (625)
                      .|++.+|..+.+.+.+  ..|+......+-+
T Consensus       497 l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r  525 (822)
T PRK14574        497 LQEWHQMELLTDDVIS--RSPEDIPSQELDR  525 (822)
T ss_pred             hhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence            9999999999999999  7786665554444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.89  E-value=1.8e-17  Score=158.96  Aligned_cols=558  Identities=15%  Similarity=0.082  Sum_probs=374.5

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------h
Q 038112           38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------L  110 (625)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~  110 (625)
                      .....+.+..+...|++++|.+++.+++++.| .+...|..|+.+|-..|+.+++...+-.+....|.....       .
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            34455566667778999999999999999974 588899999999999999999999888776666666555       5


Q ss_pred             hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH----HHHHHHHhcCCh
Q 038112          111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN----ILIDGFFKKGDY  186 (625)
Q Consensus       111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~  186 (625)
                      .+.|++.+|.-+|.++++.+ |++....-.-+..|-+.|+...|...|.++....++.|-.-+.    ..++.+...++-
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            67899999999999999987 6666666667788999999999999999999985533333222    345667777888


Q ss_pred             hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH----------------------
Q 038112          187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY----------------------  244 (625)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------------  244 (625)
                      +.|.+.++.......-..+...++.++..+.+...++.+......+.....++|..-+                      
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~  376 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY  376 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence            9999999988875545566778999999999999999999988877652222221111                      


Q ss_pred             ----HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Q 038112          245 ----CSFIHGLCKAGNVEGAERVYREMVESG--IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-NVVSYNILI  317 (625)
Q Consensus       245 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~  317 (625)
                          ..+.-++......+....+...+....  +.-+...+..+..++...|++.+|+.+|..+....+. +...|..++
T Consensus       377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a  456 (895)
T KOG2076|consen  377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA  456 (895)
T ss_pred             cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence                123344555566666666666666665  3445678899999999999999999999999887655 788999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCcc
Q 038112          318 RGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLN  397 (625)
Q Consensus       318 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  397 (625)
                      .+|...|.+++|.+.|+..+...+. +...-..+...+.+.|+.++|.+.+..+...+..          ........|.
T Consensus       457 ~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~----------~~e~~a~~~e  525 (895)
T KOG2076|consen  457 RCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGR----------NAEACAWEPE  525 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc----------chhhccccHH
Confidence            9999999999999999999988433 5556667888899999999999999865422211          1222333445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------------------CCCChhhHHHHHHHHhccCCHHHHHHH
Q 038112          398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKG----------------------CSPTVVSYNTLINGLCKVERFGEAYSF  455 (625)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~  455 (625)
                      ..........+.+.|+.++=..+-..|....                      ..........++.+-.+.++......-
T Consensus       526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  605 (895)
T KOG2076|consen  526 RRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKA  605 (895)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhc
Confidence            5555555566677777665444444333210                      011111222333333333332222111


Q ss_pred             HHHH------HHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHcCCCHHHH
Q 038112          456 VKEM------LEKGWKPDM--ITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TPDV----TMYNILIHGLCSAGKVEDA  522 (625)
Q Consensus       456 ~~~~------~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A  522 (625)
                      ...-      ...++.-+.  ..+..++..+++.+.+++|+.+...+..... ..+.    ..-...+.+....+++..|
T Consensus       606 l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a  685 (895)
T KOG2076|consen  606 LSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDA  685 (895)
T ss_pred             ccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            1111      111121111  2455667788899999999999988876421 1122    2223445666788999999


Q ss_pred             HHHHHHHHhC-CC--CCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHH
Q 038112          523 LQLYSNMKKR-NC--VPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFL  596 (625)
Q Consensus       523 ~~~~~~~~~~-~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~  596 (625)
                      ...++.+... +.  .|. ...|+.........|+-.-=.+++..+..  .+|+  +........-...++.+..|+..+
T Consensus       686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y  763 (895)
T KOG2076|consen  686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEY  763 (895)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHH
Confidence            9999998875 11  222 33444445555555544434444444443  2332  222333334556678888888877


Q ss_pred             HHHHHCCCCCCHHHHH
Q 038112          597 NDALCRGILPTTITWH  612 (625)
Q Consensus       597 ~~~~~~~~~~~~~~~~  612 (625)
                      -+...  ..||....+
T Consensus       764 ~ra~~--~~pd~Pl~n  777 (895)
T KOG2076|consen  764 MRAFR--QNPDSPLIN  777 (895)
T ss_pred             HHHHH--hCCCCcHHH
Confidence            77664  346644444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.89  E-value=2.3e-16  Score=145.67  Aligned_cols=563  Identities=13%  Similarity=0.024  Sum_probs=331.2

Q ss_pred             HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112           10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP   89 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (625)
                      ++--..|++..|..+....++.-  |.+..+|..-++    ....+.|..+...+++.. |.+..+|...+..-   .+.
T Consensus       293 rLEEvagKl~~Ar~~I~~GCe~c--prSeDvWLeaiR----Lhp~d~aK~vvA~Avr~~-P~Sv~lW~kA~dLE---~~~  362 (913)
T KOG0495|consen  293 RLEEVAGKLSVARNLIMKGCEEC--PRSEDVWLEAIR----LHPPDVAKTVVANAVRFL-PTSVRLWLKAADLE---SDT  362 (913)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhC--CchHHHHHHHHh----cCChHHHHHHHHHHHHhC-CCChhhhhhHHhhh---hHH
Confidence            44445677777777666666544  666666665543    334455666666666553 34555554444332   122


Q ss_pred             hHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           90 DKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        90 ~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      ..=.+++.+.++..|....+   .....+.+.|+-++.++.+-- +.+...|.    ++++..-++.|..+++++.+. +
T Consensus       363 ~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~-i  436 (913)
T KOG0495|consen  363 KNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREI-I  436 (913)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhh-C
Confidence            33344555555544444443   233344444555555554431 22222222    233444455555555555544 4


Q ss_pred             CCCchhhHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--Ch
Q 038112          167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVM---ETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK--DS  241 (625)
Q Consensus       167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~  241 (625)
                      +.++.+|......-...|+.+....+..+.+.   .+|+.-+...|..-...+-..|..--+..+....+.-|++-  -.
T Consensus       437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~  516 (913)
T KOG0495|consen  437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK  516 (913)
T ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence            44555555555555555555555554443321   22244444444444444444444444444444444433321  12


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      .+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..+....+|+++....|.....|......+.
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW  595 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence            244444444444555555555554444431 1133334444433334444444444444444444444444444444444


Q ss_pred             hCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCchHHHHHHH
Q 038112          322 ENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG---------------EGRLADAASLV  386 (625)
Q Consensus       322 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~a~~~~  386 (625)
                      ..|+...|..++..+.+..+. +...|...+.......+++.|..+|.+.....               .+..++|.+++
T Consensus       596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll  674 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL  674 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence            444444444444444444322 33444444444444444444444444443322               23344444444


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP  466 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  466 (625)
                      +...+. ++.-...|..+.+.+-+.++.+.|...|..-.+. ++..+..|..+...-.+.|..-.|..++++..-.+ +-
T Consensus       675 Ee~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk  751 (913)
T KOG0495|consen  675 EEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK  751 (913)
T ss_pred             HHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence            455544 3335567888889999999999999999887665 34456678888888888899999999999988764 44


Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD  546 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  546 (625)
                      +...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++-....+.+++     +..|+.....++.
T Consensus       752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~  825 (913)
T KOG0495|consen  752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK  825 (913)
T ss_pred             cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence            6788899999999999999999999998886 355667788778777776665555444433     4568888889999


Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          547 GLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .+.....+++|++.|.++++  ..||. .+|..+...+...|.-++-.++++++..
T Consensus       826 lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  826 LFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            99999999999999999999  67755 7888888999999998888899988874

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=5.4e-16  Score=137.77  Aligned_cols=456  Identities=12%  Similarity=0.056  Sum_probs=323.1

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                      ++++..|+.+|++++..+ ..+...|...+.+-.++.....|..++++++..-+. -...|.-.+.+-...|+...|+++
T Consensus        86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHH
Confidence            344555556666666554 456777888888888888888899999888876332 223455555666677888999999


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-G  271 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  271 (625)
                      |++..+   ..|+..+|++.|..-.+.+.++.|..++++..-.  .|++.+|...++.-.+.|+...+..+|+...+. |
T Consensus       164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            988876   6788889999998888888999999998887654  478888888888888888888888888888764 1


Q ss_pred             C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHHHHHH--------HHHHHHHcC
Q 038112          272 I-FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN--VVSYNILIRGLLENGKVDEAIS--------IWELLREKN  340 (625)
Q Consensus       272 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~  340 (625)
                      - ..+...+.+.+..-.++..++.|.-+|+-....-|.+  ...|..+...--+-|+......        -++.+...+
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n  318 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN  318 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence            1 1123344444444556777888888888888776664  5555555555455555433322        234444443


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH--HHHHHHHH--------HHHh
Q 038112          341 CNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA--YTCNSLMN--------GFIQ  410 (625)
Q Consensus       341 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~  410 (625)
                       +.|-.+|...+..-...|+.+...++++++..                  . ++|-.  ..|...|-        .-..
T Consensus       319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa------------------n-vpp~~ekr~W~RYIYLWinYalyeEle  378 (677)
T KOG1915|consen  319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIA------------------N-VPPASEKRYWRRYIYLWINYALYEELE  378 (677)
T ss_pred             -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc------------------c-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence             33777788888888888888888888885332                  2 22211  11211111        1134


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----hccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHH
Q 038112          411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL----CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDM  486 (625)
Q Consensus       411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  486 (625)
                      ..+.+.+.++|+..++. ++....+|..+--.|    .++.+...|.+++..++.  ..|...+|...+..-.+.++++.
T Consensus       379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDR  455 (677)
T ss_pred             hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHH
Confidence            67889999999988874 344555665544333    467889999999998885  57888999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       487 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      +.+++++.++-+ +.+..+|...+..-...|+.+.|..+|+-+++... ......|...+..-...|.+++|..+|++++
T Consensus       456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            999999999975 45788999999888899999999999999997632 1225567777777788999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHHh-----hcC-----------ChHHHHHHHHHHHH
Q 038112          566 EERLRPDIISYNITLKGLC-----SCS-----------RMSDAFEFLNDALC  601 (625)
Q Consensus       566 ~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  601 (625)
                      +  ..+-..+|-..+..-.     +.|           ....|.++|+++..
T Consensus       535 ~--rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  535 D--RTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             H--hcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            8  3444445555554322     233           56678888887754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=2e-17  Score=146.03  Aligned_cols=277  Identities=13%  Similarity=0.109  Sum_probs=189.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR--AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV  326 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  326 (625)
                      ..+.+.|+++.|+++++-+.+..-+.....-+.+...+.-  -.++..|..+-+.....+.-++.+...-......+|++
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence            3467788888888888777665433223333333333332  34577777777777666655777776666667778888


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHH
Q 038112          327 DEAISIWELLREKNCNADSTTHGVL---INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS  403 (625)
Q Consensus       327 ~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  403 (625)
                      ++|.+.|++.+..    |......+   .-.+-..|++++|++.|-++..               +.    ..+..+...
T Consensus       507 dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~---------------il----~nn~evl~q  563 (840)
T KOG2003|consen  507 DKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHA---------------IL----LNNAEVLVQ  563 (840)
T ss_pred             HHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH---------------HH----HhhHHHHHH
Confidence            8888888888776    33333332   3345667778888777764321               11    125666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC
Q 038112          404 LMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK  483 (625)
Q Consensus       404 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  483 (625)
                      +...|....+..+|++++.+.... ++.|+.....+...|-+.|+...|.+++-+-..- ++.+..+...+...|....-
T Consensus       564 ianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf  641 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF  641 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence            777788888888888888776654 3446777788888888888888888776655543 56677777778777787777


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 038112          484 IDMALKLCCQFLQKGFTPDVTMYNILIH-GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD  553 (625)
Q Consensus       484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  553 (625)
                      ++++...|++..-  +.|+..-|..++. ++.+.|++++|+++|+...+. ++.|...+.-|++.+...|-
T Consensus       642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            8888888887654  5778877776654 445678888888888888776 67777777778877777664

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=1.9e-17  Score=146.07  Aligned_cols=455  Identities=14%  Similarity=0.119  Sum_probs=298.6

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchh-hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc------ch
Q 038112          136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC-YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV------VT  208 (625)
Q Consensus       136 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~  208 (625)
                      .++..+.+.|..+....+|+..|+-+.+...-|+... -..+.+.+.+.+.+.+|++.|+..+..-   |++      ..
T Consensus       202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv---psink~~riki  278 (840)
T KOG2003|consen  202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV---PSINKDMRIKI  278 (840)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc---cccchhhHHHH
Confidence            3445556667777888899999998888766566543 3457788889999999999998877642   332      24


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC------------H
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD------------A  276 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~  276 (625)
                      .+.+...+.+.|+++.|+..|+...+.  .|+..+-..|+-++...|+.++..+.|.+|+.....||            .
T Consensus       279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~  356 (840)
T KOG2003|consen  279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD  356 (840)
T ss_pred             HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence            556666788999999999999988766  46777766777788888999999999999886533222            2


Q ss_pred             HHHHHH-----HHHHHhcCCHHHHHHHHHHHHh-cCCC---c-----HHH----------------HHHHHHHHHhCCCH
Q 038112          277 VTYNAM-----IDGFCRAGKIKECFELWEVMGR-KGCL---N-----VVS----------------YNILIRGLLENGKV  326 (625)
Q Consensus       277 ~~~~~l-----~~~~~~~~~~~~a~~~~~~~~~-~~~~---~-----~~~----------------~~~l~~~~~~~~~~  326 (625)
                      ...+..     +.-..+.++ ..|.+..-...+ ..|.   +     .++                -..-...+.++|++
T Consensus       357 ~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~  435 (840)
T KOG2003|consen  357 NLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI  435 (840)
T ss_pred             HHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence            222221     111111111 112221111111 1110   0     000                01112335566777


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHH
Q 038112          327 DEAISIWELLREKNCNADSTTHGVLINGLCK--NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSL  404 (625)
Q Consensus       327 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  404 (625)
                      +.|+++++-+.+.+-+.-+..-+.+...+..  -.++..|.+.-+.                  .... ...++.....-
T Consensus       436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~------------------aln~-dryn~~a~~nk  496 (840)
T KOG2003|consen  436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI------------------ALNI-DRYNAAALTNK  496 (840)
T ss_pred             HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH------------------Hhcc-cccCHHHhhcC
Confidence            7777776666655322212222222211111  2234444443332                  1111 11122222333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 038112          405 MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKI  484 (625)
Q Consensus       405 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  484 (625)
                      .+.....|++++|...|++.......-....|| +.-.+...|+.++|++.|-++..- +..+..++..+...|....+.
T Consensus       497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence            334456789999999999988752221111222 233466789999999998877653 344677888888899999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112          485 DMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI  564 (625)
Q Consensus       485 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  564 (625)
                      .+|.+++.+.... ++.|+.+...|...|-+.|+-.+|.+++-.-.+. ++-|..+...|+..|....-+++|+.+|+++
T Consensus       575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka  652 (840)
T KOG2003|consen  575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA  652 (840)
T ss_pred             HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999887765 5778889999999999999999999887666655 6778889999999999999999999999998


Q ss_pred             HHcCCCCCHHHHHHHHH-HHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112          565 LEERLRPDIISYNITLK-GLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG  622 (625)
Q Consensus       565 ~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  622 (625)
                      .-  +.|+..-|..++. ++.+.|++.+|..+++...+. ++.|..+...|+..|...|
T Consensus       653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence            87  8999988887775 455689999999999988753 6667788888888877655

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.2e-14  Score=129.32  Aligned_cols=476  Identities=14%  Similarity=0.073  Sum_probs=347.4

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCC
Q 038112           60 ILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLK  132 (625)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~  132 (625)
                      -|+.-+..+ ..+...|...++--..++++..|+++|++++.....+..+       -.+..+...|+.+++++...- |
T Consensus        61 efEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-P  138 (677)
T KOG1915|consen   61 EFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-P  138 (677)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-c
Confidence            344445443 3466778888888888889999999999988866655555       346778888999999988764 3


Q ss_pred             CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112          133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM  212 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  212 (625)
                      .-...|...+.+--..|+...|.++|++-.+-  .|+...|...++.-.+....+.|+.+|++.+-   ..|++.+|...
T Consensus       139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wiky  213 (677)
T KOG1915|consen  139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKY  213 (677)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHH
Confidence            33456777777777889999999999988775  78999999999999999999999999999876   56999999999


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhc
Q 038112          213 INGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD-AVTYNAMIDGFCRA  289 (625)
Q Consensus       213 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  289 (625)
                      ...-.++|+...+..+|+...+.-.  .-+...+.+++..-.++..++.|.-+|.-.+.+-++.. ...|..+...--+-
T Consensus       214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqf  293 (677)
T KOG1915|consen  214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQF  293 (677)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence            9999999999999999988765311  12334566666666677889999999999888733322 34444444444455


Q ss_pred             CCHHHHHH--------HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-hHHHHHH-----H-
Q 038112          290 GKIKECFE--------LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADST-THGVLIN-----G-  354 (625)
Q Consensus       290 ~~~~~a~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~-----~-  354 (625)
                      |+.....+        -++...+.+|.|-.+|...+...-..|+.+...++|++.+..-++.+.. .|...+-     + 
T Consensus       294 Gd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYal  373 (677)
T KOG1915|consen  294 GDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYAL  373 (677)
T ss_pred             cchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence            66544433        3566677788899999999999999999999999999999874332221 1222111     1 


Q ss_pred             --HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112          355 --LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC----NSLMNGFIQASKLENAIFLFKEMSRKG  428 (625)
Q Consensus       355 --~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~  428 (625)
                        -....+.+.+.+++..                  ... -+|....+|    ......-.+..++..|.+++...+.. 
T Consensus       374 yeEle~ed~ertr~vyq~------------------~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-  433 (677)
T KOG1915|consen  374 YEELEAEDVERTRQVYQA------------------CLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-  433 (677)
T ss_pred             HHHHHhhhHHHHHHHHHH------------------HHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-
Confidence              1245566667777663                  333 122233344    34444456778999999999887754 


Q ss_pred             CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHH
Q 038112          429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TPDVTMYN  507 (625)
Q Consensus       429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~  507 (625)
                       -|...+|...|..-.+.+.++.+..++++.++.+ +.+..+|......-...|+.+.|..+|.-++.... ......|.
T Consensus       434 -cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk  511 (677)
T KOG1915|consen  434 -CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK  511 (677)
T ss_pred             -CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence             6788899999999999999999999999999864 44667888888888889999999999999887421 11234566


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----ccC-----------ChhHHHHHHHHHHH
Q 038112          508 ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF-----KTG-----------DCDKALEIWNHILE  566 (625)
Q Consensus       508 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  566 (625)
                      ..+..-...|.++.|..+|+++.+.  .+...+|...+..-.     ..|           ....|..+|+++..
T Consensus       512 aYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  512 AYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            6666667899999999999999985  345556666655443     333           45678888888765

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=4e-14  Score=124.45  Aligned_cols=323  Identities=16%  Similarity=0.196  Sum_probs=238.9

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHccCCchHH-HHHHHHhHHhhCCCcchhhh
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA--YGKNSMPDKA-LDVFQRMNEIFGCEAGILCR  112 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~  112 (625)
                      .....-..++. +...|...++--+|+.|...|.+.++.+-..+.+.  |....++--| ++.|-.+ ...+.....--+
T Consensus       114 ~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~-~~~~E~S~~sWK  191 (625)
T KOG4422|consen  114 LQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM-RNFGEDSTSSWK  191 (625)
T ss_pred             hhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc-cccccccccccc
Confidence            33344444444 34589999999999999999999888887776653  3344444322 3344444 233333333445


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                      .|...+  -+|+.     .|....++..+|.++++-...+.|.+++++......+.+..+|+.++.+-.-.    .-.++
T Consensus       192 ~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~L  260 (625)
T KOG4422|consen  192 SGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKL  260 (625)
T ss_pred             cccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHH
Confidence            555544  33333     24567889999999999999999999999999888888999999988765432    22677


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhh----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHH
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDE----CLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG-AERVYREM  267 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~  267 (625)
                      ..+|.... ..||..++|.++.+..+.|+++.    |.+++.+|++.|++|...+|..++..+.+.++..+ +..++.++
T Consensus       261 v~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI  339 (625)
T KOG4422|consen  261 VAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI  339 (625)
T ss_pred             HHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence            77887776 89999999999999999998875    46778899999999999999999999999888755 45555555


Q ss_pred             HHC----CC---Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC--cHHHHHHHHHHHHhCCCHHHHHH
Q 038112          268 VES----GI---FV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKG------CL--NVVSYNILIRGLLENGKVDEAIS  331 (625)
Q Consensus       268 ~~~----~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~--~~~~~~~l~~~~~~~~~~~~a~~  331 (625)
                      ...    .+   .| +...|...+..|.+..+.+-|.++...+....      +.  ....|..+....+.....+.-..
T Consensus       340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~  419 (625)
T KOG4422|consen  340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK  419 (625)
T ss_pred             HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432    12   22 44556777888888899988888876665332      11  34456677777888888999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  372 (625)
                      .|+.|...-+-|...+...++++....+.++-...++....
T Consensus       420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~  460 (625)
T KOG4422|consen  420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK  460 (625)
T ss_pred             HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence            99999998888999999999999988898888888877443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.1e-13  Score=120.02  Aligned_cols=436  Identities=16%  Similarity=0.186  Sum_probs=290.2

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH--HHhcCChhHHH-HHHHHHHhCCCCCCCcchHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG--FFKKGDYMRAK-EIWERLVMETSVYPNVVTYNV  211 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~  211 (625)
                      +.+=+.++. ....|...++.-+|+.|...|++.++..-..+++.  |....+.--|. +.|-.+...+  ..+..+|  
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW--  190 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG--EDSTSSW--  190 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc--ccccccc--
Confidence            445555555 45678889999999999999888887776666554  33333332221 2222333222  2233333  


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK  291 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (625)
                            +.|+..+   ++-+..    +.+..++..+|.+.++--..+.|.+++++......+.+..+|+.++.+-.-...
T Consensus       191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~  257 (625)
T KOG4422|consen  191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG  257 (625)
T ss_pred             ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence                  2333332   333333    567778888888888888888888888888777777788888887766443322


Q ss_pred             HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HH
Q 038112          292 IKECFELWEVMGRKG-CLNVVSYNILIRGLLENGKVDE----AISIWELLREKNCNADSTTHGVLINGLCKNGYLNK-AI  365 (625)
Q Consensus       292 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~  365 (625)
                          .+++.+|.... .||..++|.++.+..+.|+++.    |.+++.+|.+.|+.|...+|..++..+.+.++..+ +.
T Consensus       258 ----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as  333 (625)
T KOG4422|consen  258 ----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS  333 (625)
T ss_pred             ----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence                56666666544 3588888888888888887665    45678889999999999999999998888777644 55


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHH
Q 038112          366 QILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG----CSPT---VVSYNT  438 (625)
Q Consensus       366 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~  438 (625)
                      .++.++...-.|.          -.+...+.+...|...+..|.+..+.+-|.++-.-+....    +.|+   ...|..
T Consensus       334 ~~i~dI~N~ltGK----------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~  403 (625)
T KOG4422|consen  334 SWINDIQNSLTGK----------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK  403 (625)
T ss_pred             HHHHHHHHhhccC----------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence            5555443321110          0111123355567778888889999999988876665421    2233   234667


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-
Q 038112          439 LINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-  517 (625)
Q Consensus       439 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  517 (625)
                      +..+.++....+.....++.|+-.-+-|+..+...++++....+.++-.-+++..+...|..-+......++..+++.. 
T Consensus       404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~  483 (625)
T KOG4422|consen  404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL  483 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence            7778888999999999999999877788889999999999999999988888888887765545544444444444433 


Q ss_pred             CH--------H-----HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC----CCH
Q 038112          518 KV--------E-----DALQLY-------SNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLR----PDI  573 (625)
Q Consensus       518 ~~--------~-----~A~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~  573 (625)
                      ++        .     -|..++       .++.+.  .-.....+..+..+.+.|..++|.+++....+++-+    |..
T Consensus       484 hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l  561 (625)
T KOG4422|consen  484 HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL  561 (625)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence            11        0     111111       222332  334566777888889999999999999999765422    233


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 038112          574 ISYNITLKGLCSCSRMSDAFEFLNDALCRGI  604 (625)
Q Consensus       574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  604 (625)
                      ....-+.+.-........|...++-|...+.
T Consensus       562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence            3344566667777889999999998876543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.2e-13  Score=118.57  Aligned_cols=439  Identities=13%  Similarity=0.099  Sum_probs=251.9

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      +....++..|+.+++.-...+-.....+-..+..++...|++++|..++..+... -.++...+..++-++.-.|.+.+|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHH
Confidence            3445566666666665554331112233334556677899999999999888775 455777888888888888999998


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      ..+-...      +.+......+.....+.++-++-..+-+.+..     ...--.++.......-.+++|+++|.+++.
T Consensus       111 ~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~  179 (557)
T KOG3785|consen  111 KSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ  179 (557)
T ss_pred             HHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8876653      23334444555666677777776666665542     122333455555555668899999999887


Q ss_pred             CCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH
Q 038112          270 SGIFVDAVTYN-AMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH  348 (625)
Q Consensus       270 ~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  348 (625)
                      .+  |+....+ .+.-+|.+..-++-+.+++....+..|.++.+.+..+....+.=.-..|..-...+...+.. .   |
T Consensus       180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~  253 (557)
T KOG3785|consen  180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y  253 (557)
T ss_pred             cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c
Confidence            53  3333333 35566778888888889988888888888888887776665543333333333333332211 0   0


Q ss_pred             HHHHHHHHh-----cCCHHHHHHHHHHHHhcC-------------CCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 038112          349 GVLINGLCK-----NGYLNKAIQILNEVEEGG-------------EGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ  410 (625)
Q Consensus       349 ~~l~~~~~~-----~~~~~~a~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  410 (625)
                       ..+.-+++     -.+-+.|++++-.+...-             .++..+|..+..++..  ..|-......++  +..
T Consensus       254 -~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aa  328 (557)
T KOG3785|consen  254 -PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAA  328 (557)
T ss_pred             -hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHH
Confidence             01111111     122234444433322211             3344444444433321  122222222222  222


Q ss_pred             cC-------CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC
Q 038112          411 AS-------KLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK  482 (625)
Q Consensus       411 ~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  482 (625)
                      .|       ...-|.+.|+-.-+.+..-|. .--..+...+.-..++++.+-++..+..- +..|......+..+.+..|
T Consensus       329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atg  407 (557)
T KOG3785|consen  329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATG  407 (557)
T ss_pred             hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhc
Confidence            22       244555555554444333222 22344555555566777777777777664 3334444445677888888


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChhHHHHHH
Q 038112          483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT-YNTLMDGLFKTGDCDKALEIW  561 (625)
Q Consensus       483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~  561 (625)
                      ++.+|.++|-.+....++.+..-...|+++|.+.+.++-|.+++-++..   +.+..+ +..++.-|.+.+.+=-|.+.|
T Consensus       408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAF  484 (557)
T KOG3785|consen  408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAF  484 (557)
T ss_pred             ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888888887776554443333335566788888888888776655433   223333 334456677777777777777


Q ss_pred             HHHHHcCCCCCHHHHH
Q 038112          562 NHILEERLRPDIISYN  577 (625)
Q Consensus       562 ~~~~~~~~~p~~~~~~  577 (625)
                      ..+..  +.|+++.|.
T Consensus       485 d~lE~--lDP~pEnWe  498 (557)
T KOG3785|consen  485 DELEI--LDPTPENWE  498 (557)
T ss_pred             hHHHc--cCCCccccC
Confidence            77766  677776653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.1e-13  Score=121.39  Aligned_cols=384  Identities=12%  Similarity=0.032  Sum_probs=215.7

Q ss_pred             CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH
Q 038112          165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY  244 (625)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  244 (625)
                      +...|+..+...+..+-+.|....|+..|...+..  .|..-.+|..|.....   +.    +........ .+.+...+
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M  228 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWM  228 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHH
Confidence            34445555555666667777778888777776654  2334444444433221   11    112222111 11111111


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 038112          245 --CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRG  319 (625)
Q Consensus       245 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~  319 (625)
                        -.+..++......+++..-.......|++-+...-+..+.+.....+++.|+.+|+++.+.+|-   +..+|..++-+
T Consensus       229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv  308 (559)
T KOG1155|consen  229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV  308 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence              1223444455566666666666666666555555555555566666677777777777666553   44444444322


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHH
Q 038112          320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAY  399 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  399 (625)
                      --..  ..-+  .                              .|..++.                   +.    +--+.
T Consensus       309 ~~~~--skLs--~------------------------------LA~~v~~-------------------id----KyR~E  331 (559)
T KOG1155|consen  309 KNDK--SKLS--Y------------------------------LAQNVSN-------------------ID----KYRPE  331 (559)
T ss_pred             Hhhh--HHHH--H------------------------------HHHHHHH-------------------hc----cCCcc
Confidence            1111  0000  0                              0111110                   11    11233


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 038112          400 TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC  479 (625)
Q Consensus       400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  479 (625)
                      |...+.+.|.-.++.++|...|++..+.++. ....|..+..-|....+...|.+-++.+++- .+.|...|..++++|.
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHH
Confidence            4555666666666777777777776665432 4456666666677777777777777777764 2446667777777777


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 038112          480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALE  559 (625)
Q Consensus       480 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  559 (625)
                      -.+-+.=|+-.|++..... +.|...|..|+.+|.+.++.++|++.|.+....| ..+...+..|+..|-+.++..+|..
T Consensus       410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence            7777777777777776642 4467777777777777777777777777777654 3355667777777777777777777


Q ss_pred             HHHHHHHc----CCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112          560 IWNHILEE----RLRPD--IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN  621 (625)
Q Consensus       560 ~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  621 (625)
                      .|++-++.    |...+  ......|..-+.+.+++++|..+.......  .+....-..|++-+.+.
T Consensus       488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir~~  553 (559)
T KOG1155|consen  488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIRKI  553 (559)
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHh
Confidence            77766651    22212  122223444566677777777776666653  45555556666665543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.5e-14  Score=127.08  Aligned_cols=485  Identities=13%  Similarity=0.045  Sum_probs=227.9

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR  114 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  114 (625)
                      ..+..-+..+.+-+..+.++.-|.-.-+++....  .++.-...+++++.-.|.++.|......- .             
T Consensus        13 ~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~-------------   76 (611)
T KOG1173|consen   13 ELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTY-K-------------   76 (611)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHh-h-------------
Confidence            4556666667766666777777777777777654  35555567777777777777777666543 1             


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC------------------------CCCCCc
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER------------------------GVETNV  170 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~  170 (625)
                                   -.  ..|.........++.+..++++|..++......                        +.....
T Consensus        77 -------------le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~es  141 (611)
T KOG1173|consen   77 -------------LE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLES  141 (611)
T ss_pred             -------------hh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchh
Confidence                         10  134445555555555666666666655522000                        000011


Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc-CChhhHHHHHHHHHhC-CCCCChhhHHHHH
Q 038112          171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKC-GRFDECLEMWDRMKKN-EREKDSFTYCSFI  248 (625)
Q Consensus       171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~  248 (625)
                      ..+..-...|....+.++|+..|......     |...+..+...-... =...+-..+++.+.-. ...-+......+.
T Consensus       142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~-----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~ly  216 (611)
T KOG1173|consen  142 SICYLRGKVYVALDNREEARDKYKEALLA-----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILY  216 (611)
T ss_pred             ceeeeeeehhhhhccHHHHHHHHHHHHhc-----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHH
Confidence            11111223344455666666666665443     333333322111100 0011111222110000 0000111111111


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE  328 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (625)
                      ....-...-+.....-.+..-.+..-+.........-+...+++.+..++++.+....|.....+..-+.++...|+..+
T Consensus       217 el~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~  296 (611)
T KOG1173|consen  217 ELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNK  296 (611)
T ss_pred             HhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccch
Confidence            11100000000000000000012233455555555666666777777777777777766666666666666666666655


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 038112          329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGF  408 (625)
Q Consensus       329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  408 (625)
                      -..+-.++.+.-+ ..+.+|..+.--|...|+..+|...|.+..                  ..+ +.-...|-.+...|
T Consensus       297 Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat------------------~lD-~~fgpaWl~fghsf  356 (611)
T KOG1173|consen  297 LFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKAT------------------TLD-PTFGPAWLAFGHSF  356 (611)
T ss_pred             HHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHh------------------hcC-ccccHHHHHHhHHh
Confidence            5555555555422 244555555555555566666666555321                  110 01123455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHH
Q 038112          409 IQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL  488 (625)
Q Consensus       409 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  488 (625)
                      .-.+.-++|...+....+.-.. ....+-.+.--|.+.+...-|.++|.++... .+.|+..++.+.-.....+.+.+|.
T Consensus       357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~  434 (611)
T KOG1173|consen  357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEAL  434 (611)
T ss_pred             hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHH
Confidence            5555556665555555443100 1111122222345555555555555555543 2333444444444444555555555


Q ss_pred             HHHHHHHhC--CC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038112          489 KLCCQFLQK--GF----TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWN  562 (625)
Q Consensus       489 ~~~~~~~~~--~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  562 (625)
                      .+|+..+..  .+    .--..+++.|+.+|.+.+.+++|+..+++.... .+.|..++..++.+|...|+++.|++.|.
T Consensus       435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            555554421  00    012334555555555555555555555555554 34455555555555555555555555555


Q ss_pred             HHHHcCCCCCHHHHHHHH
Q 038112          563 HILEERLRPDIISYNITL  580 (625)
Q Consensus       563 ~~~~~~~~p~~~~~~~l~  580 (625)
                      +++.  +.|+..+-..++
T Consensus       514 KaL~--l~p~n~~~~~lL  529 (611)
T KOG1173|consen  514 KALA--LKPDNIFISELL  529 (611)
T ss_pred             HHHh--cCCccHHHHHHH
Confidence            5555  555544444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.75  E-value=2.6e-11  Score=112.72  Aligned_cols=584  Identities=12%  Similarity=0.082  Sum_probs=364.4

Q ss_pred             ccCCh-hHHHHHHHhhccCCCCCCCHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112           14 AEKNP-HTALALFDSATREPGYAHSPHLFHHILRRLI--------DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus        14 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      ++|.+ ..-..+|+++++.-  |.+-..|..-+..-.        ...-++..-.+|++.+-.-. .-+.+|...++.+.
T Consensus        37 k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH-kmpRIwl~Ylq~l~  113 (835)
T KOG2047|consen   37 KAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH-KMPRIWLDYLQFLI  113 (835)
T ss_pred             HccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence            34444 45667888888876  888888877763211        12234444555555554321 34679999999999


Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcch---------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHH
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGI---------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGAL  155 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  155 (625)
                      ++|+...-+..|++.+...|..-.-         ....+-++-+..++++.++-.    +..-+-.+..+...+++++|.
T Consensus       114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa  189 (835)
T KOG2047|consen  114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAA  189 (835)
T ss_pred             hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHH
Confidence            9999999999999987754432221         445677889999999998754    444677788889999999999


Q ss_pred             HHHHHHHhCC------CCCCchhhHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCC--cchHHHHHHHHHhcCChhh
Q 038112          156 AVFDEMFERG------VETNVVCYNILIDGFFKKGDYM---RAKEIWERLVMETSVYPN--VVTYNVMINGLCKCGRFDE  224 (625)
Q Consensus       156 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~  224 (625)
                      +.+.......      .+.+...|..+.....+.-+.-   ....++..+...   -+|  ...|..|...|.+.|.+++
T Consensus       190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAdYYIr~g~~ek  266 (835)
T KOG2047|consen  190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLADYYIRSGLFEK  266 (835)
T ss_pred             HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHHHHHHhhhhHH
Confidence            9999887542      2335566776666666543332   233444444443   233  2468999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC----------
Q 038112          225 CLEMWDRMKKNEREKDSFTYCSFIHGLCKAG----------------------NVEGAERVYREMVESGI----------  272 (625)
Q Consensus       225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------  272 (625)
                      |.++|++....-  .+..-|..+..+|+...                      +++-...-|+.+....+          
T Consensus       267 arDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ  344 (835)
T KOG2047|consen  267 ARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ  344 (835)
T ss_pred             HHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence            999999887542  23444555555444221                      12223333444433211          


Q ss_pred             -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-
Q 038112          273 -FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD-  344 (625)
Q Consensus       273 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-  344 (625)
                       +-+...|..-.  -...|+..+-...|.++.+.-.|      ....|..+...|-..|+.+.|..+|++..+-..+-- 
T Consensus       345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence             11222232222  22346677777777776554322      456788899999999999999999999887754321 


Q ss_pred             --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC------ccHHHHHHHHHHHHhcCCHHH
Q 038112          345 --STTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK------LNAYTCNSLMNGFIQASKLEN  416 (625)
Q Consensus       345 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~  416 (625)
                        ..+|..-...-.+..+++.|..+++....-..+..   +..+    ..+.+      .+..+|...++.--..|-++.
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~---~~~y----d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes  495 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE---LEYY----DNSEPVQARLHRSLKIWSMYADLEESLGTFES  495 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh---hhhh----cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence              23444445555677888899888886654432221   0000    11111      144566666777777889999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhc---cCCHHHHHHHHH
Q 038112          417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQ---SKKIDMALKLCC  492 (625)
Q Consensus       417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~  492 (625)
                      ...+|+++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+..+.+   ...++.|..+|+
T Consensus       496 tk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE  574 (835)
T KOG2047|consen  496 TKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE  574 (835)
T ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999876544 3333333333455667788888888887765333443 345555544432   336889999999


Q ss_pred             HHHhCCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112          493 QFLQKGFTPDVT--MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEER  568 (625)
Q Consensus       493 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  568 (625)
                      +.++ |.+|...  .|......--+-|-...|..+++++... +++.  ...|+..+.-....=-+.....+|+++++  
T Consensus       575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--  650 (835)
T KOG2047|consen  575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--  650 (835)
T ss_pred             HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--
Confidence            9998 4444322  2222233334568888889999887764 4443  34566665544443345566778888888  


Q ss_pred             CCCCHHHHHH---HHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 038112          569 LRPDIISYNI---TLKGLCSCSRMSDAFEFLNDALCR-GILPTTITWHILVRAVMNNGA  623 (625)
Q Consensus       569 ~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~  623 (625)
                      .-|+...-..   ....-.+.|..+.|..++....+. .-+.+...|.+.-..-.++|+
T Consensus       651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence            4566544333   334455778888888888877653 223345567776666666665

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=4.1e-15  Score=142.60  Aligned_cols=287  Identities=10%  Similarity=0.056  Sum_probs=180.8

Q ss_pred             hhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc-h-------hhhcCChHHH
Q 038112           48 LIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG-I-------LCRKRQFEKA  119 (625)
Q Consensus        48 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-------~~~~~~~~~A  119 (625)
                      ....|+++.|.+.+....+..+ .+...+...+++....|+++.|...+.++.+..|.... +       +...|+++.|
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            3456777777777777666542 23344445566667777777777777776665555431 2       4456777777


Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH----HHHHHHHhcCChhHHHHHHHH
Q 038112          120 KRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN----ILIDGFFKKGDYMRAKEIWER  195 (625)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~  195 (625)
                      ...++.+.+.. |.+..++..+...+...|++++|.+.+..+.+.++. +...+.    .........+..++..+.+..
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            77777777765 556677778888888888888888888888877544 322221    111111222233323333333


Q ss_pred             HHhCCC--CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          196 LVMETS--VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY-CSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       196 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      +.+..+  .+.+...+..++..+...|+.++|.+.+++..+..+......+ ..........++.+.+.+.++...+..+
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            333210  1236677777888888888888888888888876442221111 1122223345777888888887776632


Q ss_pred             CcCH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          273 FVDA--VTYNAMIDGFCRAGKIKECFELWEV--MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       273 ~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      . ++  .....+...+.+.|++++|.+.|+.  ..+..| +...+..+...+.+.|+.++|.+++++....
T Consensus       331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2 44  5666788888888888888888884  444433 4444668888888888888888888876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=4.9e-16  Score=144.52  Aligned_cols=283  Identities=11%  Similarity=0.039  Sum_probs=149.6

Q ss_pred             CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHH
Q 038112           51 PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFL  123 (625)
Q Consensus        51 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~  123 (625)
                      .=+..+|...|...... .+....+...++++|+..++|++|..+|+.+.+..|....-       +.+..+--+---+-
T Consensus       332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La  410 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA  410 (638)
T ss_pred             HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence            34567888888884443 44456888899999999999999999999987766654332       11111111111111


Q ss_pred             HHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112          124 NSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY  203 (625)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  203 (625)
                      +.+.+.+ +..+.+|-.+..+|.-+++.+.|++.|+++++.++. ...+|..+..-+.....+|.|...|+..+...  +
T Consensus       411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~  486 (638)
T KOG1126|consen  411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--P  486 (638)
T ss_pred             HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--c
Confidence            2222222 344455555555555555555555555555544211 34445555555555555555555555554431  2


Q ss_pred             CCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 038112          204 PNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI  283 (625)
Q Consensus       204 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  283 (625)
                      .+-.+|..++..|.+.++++.|.-.|++..+.++ .+......+...+.+.|+.++|+++++++...... |+..-...+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence            3333444455555555555555555555554443 23444444455555555555555555555544332 444444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          284 DGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      ..+...+++++|+..++++....|.+..++..++..|.+.|+.+.|+.-|.-+...+
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            455555555555555555555555555555555555555555555555555554443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1e-14  Score=130.37  Aligned_cols=419  Identities=11%  Similarity=-0.017  Sum_probs=254.5

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      ++-+...|+|++|+++|.+++...  |..|..|...+-+|...|++++..+--..++..+| .....+..-+.++-..|+
T Consensus       122 GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  122 GNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGK  198 (606)
T ss_pred             hhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhcc
Confidence            344556777888888888887766  55577777777777778888888888887777763 244566667777777777


Q ss_pred             chHHHHHHHHhHHhhCCC----cchhhhcCChHHHHHHHHHHHHCCCC---CCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           89 PDKALDVFQRMNEIFGCE----AGILCRKRQFEKAKRFLNSLWEKGLK---PDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      +++|..=..-. ......    ......+.--..|..-..+-...+-+   |+..........+...            .
T Consensus       199 ~~eal~D~tv~-ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~------------~  265 (606)
T KOG0547|consen  199 FDEALFDVTVL-CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD------------P  265 (606)
T ss_pred             HHHHHHhhhHH-HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc------------c
Confidence            77775433221 111100    00011111112222222222221111   2222222222111100            0


Q ss_pred             HhCCCCCCchhhHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCCC-----------cchHHHHHHHHHhcCChhhH
Q 038112          162 FERGVETNVVCYNILIDGFFK--K---GDYMRAKEIWERLVMETSVYPN-----------VVTYNVMINGLCKCGRFDEC  225 (625)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a  225 (625)
                      ......+.......+...+..  .   ..+..|.+.+.+-.......++           ..+.......+.-.|+.-.|
T Consensus       266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a  345 (606)
T KOG0547|consen  266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA  345 (606)
T ss_pred             cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence            000000011111112111110  1   1333444333322211101111           11233333455567889999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          226 LEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      ..-|+..+...+.+ ...|-.+...|....+.++....|......++. ++.+|..-..++.-.+++++|..-|++....
T Consensus       346 ~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L  423 (606)
T KOG0547|consen  346 QEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL  423 (606)
T ss_pred             hhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999998776543 333777888899999999999999999887654 7888999899999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112          306 GCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL  385 (625)
Q Consensus       306 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~  385 (625)
                      .|.+...|..+..+..+.++++++...|++..++ ++.-+..++.....+...++++.|.+.++......+.        
T Consensus       424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~--------  494 (606)
T KOG0547|consen  424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR--------  494 (606)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc--------
Confidence            9999999999999999999999999999999887 3446788889999999999999999999854422110        


Q ss_pred             HHHHhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112          386 VNRMDKHGC--KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE  461 (625)
Q Consensus       386 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (625)
                           ..++  .+.+.+...++..- -.+++..|..++++..+.++. ....|..|...-.+.|+.++|+++|++...
T Consensus       495 -----~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  495 -----EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             -----cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                 0111  11222222222222 236777777777777766433 344677777777777777777777776554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.2e-13  Score=121.19  Aligned_cols=365  Identities=12%  Similarity=0.031  Sum_probs=238.4

Q ss_pred             CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCC-HhHH-HHHHHHHHh
Q 038112           70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPD-VYSY-GTVINGLVK  147 (625)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~  147 (625)
                      ..|...+...+..+-+.|..+.|+..|-......|....++...++.-.-+.......... +.| ...- .-+..++..
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l-~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGL-PSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcC-cccchHHHHHHHHHHHHH
Confidence            3456666777778888888889999988888888888887666665555555555544332 222 1111 112344445


Q ss_pred             cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHH
Q 038112          148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECL  226 (625)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~  226 (625)
                      ..+.+++++-.+.....|++.+...-+..+.+.....++++|+.+|+.+.+.++..- |..+|..++  |.++.+..-  
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skL--  315 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKL--  315 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHH--
Confidence            557788888888888888887777777777777888888888888888887643322 344565554  333332221  


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112          227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG  306 (625)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  306 (625)
                      ..+-+-.-.-.+--+.|...+++.|.-.++.++|...|++.++.++. ....|..+.+-|....+...|++-++.+.+..
T Consensus       316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence            11111111101334566777777788888888888888888876543 56677778888888888888888888888888


Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112          307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV  386 (625)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~  386 (625)
                      |.|-.+|..|+++|.-.+.+.-|+-.|++.....+. |+..|..+...|.+.++.++|++-+..                
T Consensus       395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykr----------------  457 (559)
T KOG1155|consen  395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKR----------------  457 (559)
T ss_pred             chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHH----------------
Confidence            888888888888888888888888888887776433 777777777777777777777777773                


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-C-ChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK----GCS-P-TVVSYNTLINGLCKVERFGEAYSFVKEML  460 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  460 (625)
                        ....+ +.+...+..+...|-+.++.++|...|++-.+.    |.. | .......|..-+.+.+++++|..+.....
T Consensus       458 --ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  458 --AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             --HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence              22222 124466777777777777777777777765541    211 1 11122234444556666666665544443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.74  E-value=1.3e-11  Score=114.62  Aligned_cols=523  Identities=12%  Similarity=0.147  Sum_probs=295.8

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----hhh
Q 038112           38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----LCR  112 (625)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~  112 (625)
                      |..|..-+..+..+|+...-...|..++..-|- ....+|...+......+-++.+..++++.++..|....-    ++.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~  181 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK  181 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            455555555555555555555555555544221 123455555555555555555555555555544443222    455


Q ss_pred             cCChHHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCCCchhhHHHHHHHHhc
Q 038112          113 KRQFEKAKRFLNSLWEK------GLKPDVYSYGTVINGLVKSGDLLG---ALAVFDEMFERGVETNVVCYNILIDGFFKK  183 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  183 (625)
                      .+++++|.+.+...+..      ..+.+...|..+-....++.+.-.   ...+++.++..-..-=-..|..|+..|++.
T Consensus       182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~  261 (835)
T KOG2047|consen  182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS  261 (835)
T ss_pred             ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence            55555555555554322      113344445555444444333222   233333333321111123456666666666


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----------------cC------ChhhHHHHHHHHHhCCC----
Q 038112          184 GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----------------CG------RFDECLEMWDRMKKNER----  237 (625)
Q Consensus       184 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g------~~~~a~~~~~~~~~~~~----  237 (625)
                      |.+++|..+|++....-   ....-|..+-..|..                .+      +++-.+..|+.+....+    
T Consensus       262 g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN  338 (835)
T KOG2047|consen  262 GLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN  338 (835)
T ss_pred             hhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence            66666666666655431   122222222222111                01      12223334444433221    


Q ss_pred             -------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          238 -------EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD------AVTYNAMIDGFCRAGKIKECFELWEVMGR  304 (625)
Q Consensus       238 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  304 (625)
                             +.++..|..-..  ...|+..+-...|.++++. +.|.      ...|..+...|-..|+++.|..+|++..+
T Consensus       339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~  415 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK  415 (835)
T ss_pred             HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence                   223444443333  3467788888888888765 2222      35688899999999999999999999988


Q ss_pred             cCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----------------hhhHHHHHHHHHhcCCHHH
Q 038112          305 KGCLN----VVSYNILIRGLLENGKVDEAISIWELLREKNCNAD-----------------STTHGVLINGLCKNGYLNK  363 (625)
Q Consensus       305 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~~~  363 (625)
                      ...+.    ..+|...+..-.+..+++.|+++++......-.|.                 ...|...+..--..|-++.
T Consensus       416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes  495 (835)
T KOG2047|consen  416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES  495 (835)
T ss_pred             CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence            76552    46777778888888999999998887765421111                 1122222222233344444


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHH
Q 038112          364 AIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-SYNTLING  442 (625)
Q Consensus       364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~  442 (625)
                      ...+++                  .+....+. ++.........+-...-++++.++|++-...-..|+.. .|+..+.-
T Consensus       496 tk~vYd------------------riidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk  556 (835)
T KOG2047|consen  496 TKAVYD------------------RIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK  556 (835)
T ss_pred             HHHHHH------------------HHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence            444444                  55554443 33333334444555667889999998877654455554 66666555


Q ss_pred             Hhc---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHH--HHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHc
Q 038112          443 LCK---VERFGEAYSFVKEMLEKGWKPDMITYSLLI--NGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCS  515 (625)
Q Consensus       443 ~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~  515 (625)
                      +.+   ....+.|..+|+++.+ |++|...-+..++  ..-.+-|-...|+.+++++... +++.  ...|+..+.--..
T Consensus       557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae  634 (835)
T KOG2047|consen  557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE  634 (835)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence            443   3468999999999998 6776544332332  2223457788899999997764 3332  3466666643333


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChH
Q 038112          516 AGKVEDALQLYSNMKKRNCVPNLVT---YNTLMDGLFKTGDCDKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMS  590 (625)
Q Consensus       516 ~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~  590 (625)
                      .=-+.....+|+++++.  -|+...   ....+..-.+.|..+.|..+|....+- .+|  +...|...-..-.+.|+-+
T Consensus       635 ~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  635 IYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             HhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHH
Confidence            22344566778888774  455433   334455567889999999999887773 344  5677777777778888843

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.73  E-value=6.1e-14  Score=133.72  Aligned_cols=286  Identities=13%  Similarity=0.083  Sum_probs=175.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      .|+++.|.+.+.............+..........|+++.|...+.++.+....+...........+...|+++.|...+
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            46666666555554433211222222223334566666666666666655422211111112244556666666666666


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH
Q 038112          369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-------SYNTLIN  441 (625)
Q Consensus       369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~  441 (625)
                      ++                  +.+.. +-++.....+...|.+.|+++.|..++..+.+....++..       .|..++.
T Consensus       177 ~~------------------~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        177 DK------------------LLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HH------------------HHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            63                  22222 2245566666666777777777777777776654332211       2222233


Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112          442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED  521 (625)
Q Consensus       442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  521 (625)
                      ......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+.  +|+.....  +.+....++.++
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~  312 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQ  312 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHH
Confidence            333344455555666655443 3446667777888888888888888888888774  45553332  223335588888


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +++..+...+. .+.|+..+..+++.|...|++++|.+.|+.+.+  ..|+...+..+..++.+.|+.++|.+.+++.+.
T Consensus       313 al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        313 LEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88888888876 355677788888888888888888888888888  778888888888888888888888888887754

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2.3e-13  Score=116.77  Aligned_cols=444  Identities=12%  Similarity=0.072  Sum_probs=286.9

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112          142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR  221 (625)
Q Consensus       142 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  221 (625)
                      +.-+....|+..|+.+++-....+-+....+-..++.++...|++++|...|..+....  .++...+..|.-++.-.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence            34456678999999999887765544444566778899999999999999999988764  5667778788888888899


Q ss_pred             hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112          222 FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEV  301 (625)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  301 (625)
                      +.+|..+-...     +.++..-..++....+.++-++-....+.+...     ..--.++.......-.+++|++++..
T Consensus       107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkr  176 (557)
T KOG3785|consen  107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKR  176 (557)
T ss_pred             HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999887665     334555556666777888877777766665432     23344556666666779999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---
Q 038112          302 MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADS-TTHGVLINGLCKNGYLNKAIQILNEVEEGGEG---  377 (625)
Q Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---  377 (625)
                      +...++.-...-..+.-+|.+..-++-+.+++...++.  -||+ ...+..+....+.=+-..|.+-..++......   
T Consensus       177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~  254 (557)
T KOG3785|consen  177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP  254 (557)
T ss_pred             HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence            99877665555555677888888899999988887776  2343 33333333333322222233333333222211   


Q ss_pred             --------------chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112          378 --------------RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL  443 (625)
Q Consensus       378 --------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  443 (625)
                                    .-+.|.+++..+...    -+..-..++-.|.+.++..+|..+..++.-.    ++.-|..-.-.+
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~  326 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVF  326 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHH
Confidence                          122233333333221    2233445666788999999999988766421    222232222223


Q ss_pred             hccC-------CHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          444 CKVE-------RFGEAYSFVKEMLEKGWKPDMI-TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS  515 (625)
Q Consensus       444 ~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  515 (625)
                      +..|       ...-|.+.|+-.-+.+..-|.. --.++...+.-..++++.+..+..+...-...|...+ .++++++.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence            3333       3445555565544444333322 2234445555667788888888887775333344444 57899999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhhcCChHHHHH
Q 038112          516 AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS-YNITLKGLCSCSRMSDAFE  594 (625)
Q Consensus       516 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~  594 (625)
                      .|++.+|.++|-++....++.+..-...|+++|.+.+.++-|++++-++-   .+.+..+ ...++..|++++.+=-|.+
T Consensus       406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaK  482 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAK  482 (557)
T ss_pred             hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888765555445555678999999999999988764442   2223333 3444578999999888888


Q ss_pred             HHHHHHHCCCCCCHHHHHH
Q 038112          595 FLNDALCRGILPTTITWHI  613 (625)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~  613 (625)
                      .|+.+..  +.|++..|..
T Consensus       483 AFd~lE~--lDP~pEnWeG  499 (557)
T KOG3785|consen  483 AFDELEI--LDPTPENWEG  499 (557)
T ss_pred             hhhHHHc--cCCCccccCC
Confidence            8888764  4566666643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.9e-14  Score=126.10  Aligned_cols=378  Identities=14%  Similarity=0.102  Sum_probs=253.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 038112          208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKD-SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGF  286 (625)
Q Consensus       208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  286 (625)
                      .+...+.-+.++|.+++|+++|...+..  .|+ +..|.....+|...|+|++..+--...++.++. -...+..-..++
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH  193 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence            4566778889999999999999999876  456 777888899999999999999998888886432 356677777888


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cC--CCCChhhHHHHHHHHHh------
Q 038112          287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-KN--CNADSTTHGVLINGLCK------  357 (625)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~------  357 (625)
                      ...|++.+|+.-.....-.+..+......++.-..+    ..+....++-.. .+  .-|+.....+....+..      
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~  269 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF  269 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence            889999988765544332222211111222221111    122222222222 21  22333333222222110      


Q ss_pred             --cC--------------------CHHHHHHHHHHHHhcC-----------------------------CCchHHHHHHH
Q 038112          358 --NG--------------------YLNKAIQILNEVEEGG-----------------------------EGRLADAASLV  386 (625)
Q Consensus       358 --~~--------------------~~~~a~~~~~~~~~~~-----------------------------~~~~~~a~~~~  386 (625)
                        .+                    .+..|...+.+-....                             .++.-.+...+
T Consensus       270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~  349 (606)
T KOG0547|consen  270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF  349 (606)
T ss_pred             cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence              00                    1122222111110000                             34455555556


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP  466 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  466 (625)
                      +..+.....++ ..|-.+...|....+.++..+.|+.....++. ++.+|..-.+.+.-.+++++|..=|++.+... +.
T Consensus       350 ~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe  426 (606)
T KOG0547|consen  350 DAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PE  426 (606)
T ss_pred             HHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hh
Confidence            66665544432 23666777788889999999999998887644 66677777777777889999999999998852 33


Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------HH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-------LV  539 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~  539 (625)
                      +...|..+..+..+.+.+++++..|++.+++ ++..+..|+..+..+...+++++|.+.|+..+..  .|.       ..
T Consensus       427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~  503 (606)
T KOG0547|consen  427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAA  503 (606)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccch
Confidence            4566777777778889999999999999887 5667899999999999999999999999999874  333       22


Q ss_pred             HH--HHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          540 TY--NTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       540 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .+  -.++ .+.-.+++..|..+++++++  +.|. ...+..+...-.+.|+.++|+++|++...
T Consensus       504 plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  504 PLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            21  1222 12235899999999999999  7884 46788999999999999999999998764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=8.3e-13  Score=120.74  Aligned_cols=455  Identities=13%  Similarity=0.037  Sum_probs=243.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      .++-+-...|.++.-|.-+-+.+...   ..+|....-+++++.-.|.++.|..+...-.-.  ..+.......+.++.+
T Consensus        20 ~~~~r~~l~q~~y~~a~f~adkV~~l---~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~   94 (611)
T KOG1173|consen   20 RRLVRDALMQHRYKTALFWADKVAGL---TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVK   94 (611)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhc---cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHH
Confidence            33444455677888888777765533   466777777889999899999998877766433  2467778888899999


Q ss_pred             cCCchHHHHHHHHhHH------hhCCC-----------------cch---------hhhcCChHHHHHHHHHHHHCCCCC
Q 038112           86 NSMPDKALDVFQRMNE------IFGCE-----------------AGI---------LCRKRQFEKAKRFLNSLWEKGLKP  133 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~------~~~~~-----------------~~~---------~~~~~~~~~A~~~~~~~~~~~~~~  133 (625)
                      ..+++.|..++...+.      .++..                 ..+         |....++++|...|.+++..++ .
T Consensus        95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~  173 (611)
T KOG1173|consen   95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-K  173 (611)
T ss_pred             HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-h
Confidence            9999999999983311      00100                 000         4455566777777777665441 1


Q ss_pred             CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC----CCchhhHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCCcch
Q 038112          134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE----TNVVCYNILIDGFF-KKGDYMRAKEIWERLVMETSVYPNVVT  208 (625)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~  208 (625)
                      +-..+..++....     -.+.+.++.+......    .+......+..... +..+-+ ....-.. .+..+...+...
T Consensus       174 c~Ea~~~lvs~~m-----lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~-~sl~~l~~~~dl  246 (611)
T KOG1173|consen  174 CFEAFEKLVSAHM-----LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNED-ESLIGLAENLDL  246 (611)
T ss_pred             hHHHHHHHHHHHh-----cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCch-hhhhhhhhcHHH
Confidence            2223333333221     1222223333222110    01111111111110 000000 0000000 000012233344


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      .....+-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-.-+=.++++.- +-.+.+|..++..|..
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence            44455566667777777777777765543 455555555666777777777666666666653 2256677777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      .|+..+|.+.|.+....++.-..+|..++..+.-.|..++|+..+..+-+.-+. ....+..+.--|.+.++++.|.+.|
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHH
Confidence            777777777777777776667777777777777777777777777666554211 1222223344455566666666665


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CChhhHHHHHHH
Q 038112          369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK----GC-S-PTVVSYNTLING  442 (625)
Q Consensus       369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~  442 (625)
                      .+...                  . .|.|+.+.+-+.......+.+.+|..+|+.....    +. . .-..+++.+..+
T Consensus       404 ~~A~a------------------i-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  404 KQALA------------------I-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             HHHHh------------------c-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            53211                  1 1334455555555555555666666666554421    00 0 012234444455


Q ss_pred             HhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112          443 LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ  496 (625)
Q Consensus       443 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  496 (625)
                      +.+.+.+++|+..+++.+.. .+-+..++.+++..|...|+++.|.+.|.+.+.
T Consensus       465 ~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  465 YRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            55555555555555554443 233444445555555555555555555554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=3e-17  Score=149.60  Aligned_cols=262  Identities=15%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112           43 HILRRLIDPKLVVHVSRILELIEIQK-CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR  121 (625)
Q Consensus        43 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  121 (625)
                      .++..+.+.|++++|.+++....... ++.+...+..++......++++.|+..++++....+.                
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~----------------   76 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA----------------   76 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence            45677777777777777775544443 4455566666666666677777777777766442221                


Q ss_pred             HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038112          122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS  201 (625)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  201 (625)
                                  ++..+..++.. ...+++++|..+++...+..  +++..+..++..+...++++++.++++.+.....
T Consensus        77 ------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~  141 (280)
T PF13429_consen   77 ------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA  141 (280)
T ss_dssp             --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred             ------------ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence                        23334444443 45555666666555554432  3444455555555566666666666665554333


Q ss_pred             CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 038112          202 VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNA  281 (625)
Q Consensus       202 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  281 (625)
                      .+++...|..+...+.+.|+.++|++.+++..+..+ .|......++..+...|+.+++.++++...+.. +.++..+..
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~  219 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA  219 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence            344455555555666666666666666666655432 244555555666666666666555555554442 234445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      +..++...|+.++|+.+|+...+..|.|+.....++.++...|+.++|.++.+++.
T Consensus       220 la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  220 LAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             HHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66666666666666666666666666666666666666666666666666555443

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=7.5e-14  Score=133.97  Aligned_cols=292  Identities=12%  Similarity=0.026  Sum_probs=161.2

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038112          288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQI  367 (625)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  367 (625)
                      ..|+++.|.+.+....+..+.+...+.....+....|+++.|.+.+.+..+..+.+...........+...|+++.|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            34555555555555544443344444444455555555555555555554432111111222234455555555555555


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH---H
Q 038112          368 LNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN-TLING---L  443 (625)
Q Consensus       368 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~  443 (625)
                      ++.                  +.+.. |-++.+...+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..+   .
T Consensus       176 l~~------------------l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~  235 (409)
T TIGR00540       176 VDK------------------LLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGL  235 (409)
T ss_pred             HHH------------------HHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence            552                  22222 224445555666666666666666666666655432 222221 11111   1


Q ss_pred             hccCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCH
Q 038112          444 CKVERFGEAYSFVKEMLEKG---WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM-YNILIHGLCSAGKV  519 (625)
Q Consensus       444 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~  519 (625)
                      ...+..+++.+.+..+.+..   .+.+...+..++..+...|+.++|.+++++..+....+.... ...........++.
T Consensus       236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence            12222222333444444321   112566677777778888888888888888877532211111 11111222345677


Q ss_pred             HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 038112          520 EDALQLYSNMKKRNCVPNL--VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLN  597 (625)
Q Consensus       520 ~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  597 (625)
                      +.+.+.+++..+. .+.|+  .....+++.+.+.|++++|.+.|+.+......|+...+..+...+.+.|+.++|.++++
T Consensus       316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7888888877775 34455  66778888888888888888888843332267888778888888888888888888888


Q ss_pred             HHH
Q 038112          598 DAL  600 (625)
Q Consensus       598 ~~~  600 (625)
                      +.+
T Consensus       395 ~~l  397 (409)
T TIGR00540       395 DSL  397 (409)
T ss_pred             HHH
Confidence            764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=3.9e-14  Score=135.06  Aligned_cols=279  Identities=14%  Similarity=0.083  Sum_probs=200.5

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHccCCchHHHHHHHHhHHhhCCCcc--------hhhhcCChHHHH
Q 038112           50 DPKLVVHVSRILELIEIQKCYCPEDVALS-VIQAYGKNSMPDKALDVFQRMNEIFGCEAG--------ILCRKRQFEKAK  120 (625)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~~~A~  120 (625)
                      ..|+++.|++.+....+.. + .+.++.. .+....+.|+++.|...+.++.+..|....        .+...|+++.|.
T Consensus        96 ~eGd~~~A~k~l~~~~~~~-~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHA-E-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcc-c-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            3688888887777655542 1 2333333 344447788888888888877665555421        156678888888


Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCc-------hhhHHHHHHHHhcCChhHHHHHH
Q 038112          121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNV-------VCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      ..++++.+.+ |.++..+..+...+.+.|++++|..++..+.+.+..++.       .+|..++.......+.+...++|
T Consensus       174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            8888887776 667788888888888999999999999988887544222       13334444444555667777777


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF  273 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  273 (625)
                      +.+.+.  .+.+......+...+...|+.++|.+++++..+.  +++....  ++.+....++.+++++..+...+..+.
T Consensus       253 ~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        253 KNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence            777554  3556777888888999999999999999888764  3444322  334444568889999999888877543


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          274 VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                       |+.....+...+.+.+++++|.+.|+.+....|. ...+..+..++.+.|+.++|.+++++....
T Consensus       327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             6777888899999999999999999998887644 455667888899999999999998877653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=6.5e-17  Score=147.41  Aligned_cols=262  Identities=16%  Similarity=0.128  Sum_probs=97.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .+++++...|+++.|+.+++........|.++..|..++...-..++++.|.+.|++++..++. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            4678899999999999999765544323778888888888888899999999999999988643 66677777777 688


Q ss_pred             CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG-  165 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  165 (625)
                      +++++|..++....+                           .  .+++..+..++..+.+.++++.+..+++.+.... 
T Consensus        91 ~~~~~A~~~~~~~~~---------------------------~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~  141 (280)
T PF13429_consen   91 GDPEEALKLAEKAYE---------------------------R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA  141 (280)
T ss_dssp             --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred             ccccccccccccccc---------------------------c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence            888888888876532                           1  2345556667777777888888888888766542 


Q ss_pred             CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112          166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC  245 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  245 (625)
                      .+.++..|..++.++.+.|+.++|++.+++.++..  |.+......++..+...|+.+++.++++...+.. +.++..+.
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~  218 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD  218 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence            24466677777788888888888888888887763  4456677777778888888888777777766554 34556677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG  303 (625)
Q Consensus       246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  303 (625)
                      .+..++...|+.++|+..|++..+..+ .|+.....++.++...|+.++|.++.+.+.
T Consensus       219 ~la~~~~~lg~~~~Al~~~~~~~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  219 ALAAAYLQLGRYEEALEYLEKALKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHT----------------
T ss_pred             HHHHHhccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            778888888888888888888777532 377777788888888888888888776654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.69  E-value=7.7e-12  Score=116.42  Aligned_cols=449  Identities=14%  Similarity=0.107  Sum_probs=278.8

Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV  157 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  157 (625)
                      ..+.|...+...+.+++.+|..+..       +...|+-++|....+..+..+ ..+.+.|..+.-.+....++++|+..
T Consensus        19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc   97 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC   97 (700)
T ss_pred             HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence            4445555555555555554444443       444555666666655555554 34567788888778888999999999


Q ss_pred             HHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 038112          158 FDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE-  236 (625)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-  236 (625)
                      |..+...+. .|...|..+.-.-++.|+++........+.+.  .+.....|..++.++.-.|+...|..+++...+.. 
T Consensus        98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~  174 (700)
T KOG1156|consen   98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN  174 (700)
T ss_pred             HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999998853 37788888888889999999999888888876  34556678889999999999999999999888754 


Q ss_pred             CCCChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 038112          237 REKDSFTYCSFI------HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV  310 (625)
Q Consensus       237 ~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  310 (625)
                      ..|+...+....      ......|.+++|.+.+..-... +.-....-..-...+.+.+++++|..++..+....|.+.
T Consensus       175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~  253 (700)
T KOG1156|consen  175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL  253 (700)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence            235555443322      3455778888888877665443 221223334456778889999999999999999999888


Q ss_pred             HHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112          311 VSYNILIRGLLENGKVDEAI-SIWELLREKNCNADSTTHGVLINGLCKNGYLN-KAIQILNEVEEGGEGRLADAASLVNR  388 (625)
Q Consensus       311 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~a~~~~~~  388 (625)
                      ..+..+..++.+-.+.-++. .+|....+.-.  .......+--......++. ..-.++.                  .
T Consensus       254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r~e~p~Rlplsvl~~eel~~~vdkyL~------------------~  313 (700)
T KOG1156|consen  254 DYYEGLEKALGKIKDMLEALKALYAILSEKYP--RHECPRRLPLSVLNGEELKEIVDKYLR------------------P  313 (700)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--ccccchhccHHHhCcchhHHHHHHHHH------------------H
Confidence            88888888886333333333 56665554421  1111111111111111111 1222222                  4


Q ss_pred             HhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC----------CCCChhhH--HHHHHHHhccCCHHHH
Q 038112          389 MDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR----KG----------CSPTVVSY--NTLINGLCKVERFGEA  452 (625)
Q Consensus       389 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a  452 (625)
                      ..+.|+++   ++..+...|-.-...+-..++...+..    .+          -+|....|  -.++..+-..|+++.|
T Consensus       314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A  390 (700)
T KOG1156|consen  314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA  390 (700)
T ss_pred             HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence            44555443   223333333222211111111111111    00          13444434  3456677788899999


Q ss_pred             HHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          453 YSFVKEMLEKGWKPDM-ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       453 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                      ..+++..+.+  .|+. ..|..-.+.+...|+++.|..++++..+.+ .+|..+-..-+.-..+.++.++|.++.....+
T Consensus       391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence            9999888875  4543 345555677888889999999988888764 44555544566667788888888888888877


Q ss_pred             CCCC--CC----HHHHHH--HHHHHHccCChhHHHHHHHHH
Q 038112          532 RNCV--PN----LVTYNT--LMDGLFKTGDCDKALEIWNHI  564 (625)
Q Consensus       532 ~~~~--~~----~~~~~~--l~~~~~~~g~~~~A~~~~~~~  564 (625)
                      .|..  .|    .-.|..  =+.+|.+.|++..|++=|..+
T Consensus       468 ~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  468 EGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             cccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            6531  01    111222  245577777777776654444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=3.4e-14  Score=132.49  Aligned_cols=285  Identities=10%  Similarity=0.022  Sum_probs=136.3

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                      +.++|...|+++.++ .....+....+..+|...+++++|..+|+.+.+..+  --+.++|...+-.+-+   .-+--.+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence            344555555553222 233345555555555555555555555555554421  0133344443332211   1111111


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      -+.+.+.  .+..+.+|-.++.+|.-+++.+.|++.|++..+..+ ....+|+.+..-+.....++.|...|+..+...+
T Consensus       410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            1222222  133344555555555555555555555555554432 2444555555555555555555555555554321


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112          273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI  352 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  352 (625)
                      . +-..|..+...|.+.++++.|+-.|+.+...+|.+......++..+.+.|+.++|+++++++...+++ |+......+
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~  564 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA  564 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence            1 33444445555555555555555555555555555555555555555555555555555555555433 344444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038112          353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK  427 (625)
Q Consensus       353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  427 (625)
                      ..+...+++++|+..++++                  +.. ++.+..++..+...|.+.|+.+.|..-|..+...
T Consensus       565 ~il~~~~~~~eal~~LEeL------------------k~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEEL------------------KEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHhhcchHHHHHHHHHH------------------HHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            4455555555555555522                  221 1223444455555555555555555555555444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.68  E-value=1.1e-12  Score=114.91  Aligned_cols=286  Identities=14%  Similarity=0.098  Sum_probs=184.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      .|+|..|++...+..+.+......|..-+.+.-..|+.+.+-.++.++.+....++........+.....|+++.|..-+
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            35555555555555555444555555555555556666666666655555432333333444445555566666665555


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHH
Q 038112          369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV-------SYNTLIN  441 (625)
Q Consensus       369 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~  441 (625)
                      .+                  +...+ +.++.+......+|.+.|++.....++..+.+.+.-.++.       +|+.+++
T Consensus       177 ~~------------------ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~  237 (400)
T COG3071         177 DQ------------------LLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ  237 (400)
T ss_pred             HH------------------HHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence            52                  22222 2245556666666777777777777777776665443432       4555555


Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112          442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED  521 (625)
Q Consensus       442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  521 (625)
                      -....+..+.-...++..... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+   ...+ -.+.+-++.+.
T Consensus       238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~  312 (400)
T COG3071         238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEP  312 (400)
T ss_pred             HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchH
Confidence            555555555555556655543 455666667777788888888888888888888766555   2122 23446677777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      -++..++..+. .+.++..+..|+..|.+.+.+.+|...|+.+++  ..|+..+|..+.+++.+.|+..+|.+..++.+-
T Consensus       313 l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         313 LIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            77777777765 355667888888888888888888888888887  788888888888888888888888888887763

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.67  E-value=3.8e-13  Score=114.13  Aligned_cols=220  Identities=17%  Similarity=0.125  Sum_probs=156.3

Q ss_pred             cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHhcCChhhH
Q 038112          148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV--VTYNVMINGLCKCGRFDEC  225 (625)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a  225 (625)
                      +++.+.|.+.|-+|.+.+. -+..+...|.+.|-+.|..|+|+.+.+.+.+..+.+.+.  .+...|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            5677888888888887632 255566778888888888888888888887654222221  2345567778888888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112          226 LEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWEV  301 (625)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  301 (625)
                      ..+|..+.+.+ +--......|+..|-...+|++|+++-+++.+.+..+.    ...|..+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            88888877543 23445667788888888888888888888877754433    23355566666667778888888888


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          302 MGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                      ....++..+.+-..+.+.....|+++.|++.++.+.+.++.--+.+...+..+|...|+.++....+.
T Consensus       206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            88877777777777888888888888888888888777554444555556666666666666666665

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=3.3e-12  Score=112.08  Aligned_cols=299  Identities=14%  Similarity=0.118  Sum_probs=216.9

Q ss_pred             hcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112          218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE  297 (625)
Q Consensus       218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  297 (625)
                      -.|+|..|.+...+-.+.+..| ...|..-+++.-+.|+.+.+-.++.++.+....++........+.....|+++.|..
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            3688888888888876665432 344555667777888888888888888776445566666777778888888888888


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112          298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEG  377 (625)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  377 (625)
                      -+..+....|.++........+|.+.|++.+...++..+.+.+.-.++..-..                           
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------  227 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------  227 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------------
Confidence            88888888888888888888888888888888888888888765533322110                           


Q ss_pred             chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 038112          378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVK  457 (625)
Q Consensus       378 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  457 (625)
                                         ...+|..+++-....+..+.-...++....+ ...++..-..++.-+.+.|+.++|.++..
T Consensus       228 -------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~  287 (400)
T COG3071         228 -------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE  287 (400)
T ss_pred             -------------------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence                               1224444544444444444544555555432 23355666677777888889999998888


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 038112          458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN  537 (625)
Q Consensus       458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  537 (625)
                      +..+++..|.   +. ..-.+.+-++...-.+..++..+. .+.++..+..|+..|.+.+.|.+|...|+...+  ..|+
T Consensus       288 ~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s  360 (400)
T COG3071         288 DALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPS  360 (400)
T ss_pred             HHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCC
Confidence            8888766655   21 222356677777777777777665 244668888999999999999999999998887  4789


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                      ..+|+.++.++.+.|++.+|.+..++.+..-..|
T Consensus       361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         361 ASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999988887543344

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.65  E-value=2e-10  Score=109.55  Aligned_cols=436  Identities=11%  Similarity=0.017  Sum_probs=249.8

Q ss_pred             CCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcch
Q 038112          129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVT  208 (625)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  208 (625)
                      ..+..|...|..+.-++...|+++.+.+.|++....-+ .....|..+..++...|.-..|..+++........+++...
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            34456778888888888888888888888888876533 25677888888888888888888888876655422344444


Q ss_pred             HHHHHHHHH-hcCChhhHHHHHHHHHhC--CC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 038112          209 YNVMINGLC-KCGRFDECLEMWDRMKKN--ER--EKDSFTYCSFIHGLCKA-----------GNVEGAERVYREMVESGI  272 (625)
Q Consensus       209 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~  272 (625)
                      +-..-..|. +.+..++++++..++...  +.  ...+..|..+.-+|...           ....++++.+++.++.+.
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            444334444 346777777777666541  11  12334454444444321           124567777888877654


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038112          273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVL  351 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  351 (625)
                      . |+.+...+.--|+..++++.|.+..++....++ .++.+|..++-++...+++.+|+.+.+.....-.. +......-
T Consensus       476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~  553 (799)
T KOG4162|consen  476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGK  553 (799)
T ss_pred             C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhh
Confidence            3 666666777778888888888888888888744 48888888888888888888888888777654111 12222222


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 038112          352 INGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK--GC  429 (625)
Q Consensus       352 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~  429 (625)
                      +..-...++.+++......+..-           ++..      +.          ....++-....+....+.-.  ..
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~-----------we~~------~~----------~q~~~~~g~~~~lk~~l~la~~q~  606 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLAL-----------WEAE------YG----------VQQTLDEGKLLRLKAGLHLALSQP  606 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHH-----------HHhh------hh----------HhhhhhhhhhhhhhcccccCcccc
Confidence            23333456666666555533210           0000      00          00001111111111111110  11


Q ss_pred             CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--C------HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038112          430 SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP--D------MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP  501 (625)
Q Consensus       430 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  501 (625)
                      ...+.++..+.......+........   +...-..|  +      ...|......+.+.++.++|...+.+..... +.
T Consensus       607 ~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l  682 (799)
T KOG4162|consen  607 TDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PL  682 (799)
T ss_pred             cccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh
Confidence            11111222222111110000000000   11111111  1      1234445555666677777776666666542 33


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHH--HHHHHHHcCCCC-CHHHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALE--IWNHILEERLRP-DIISYNI  578 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p-~~~~~~~  578 (625)
                      ....|...+..+...|.+++|...|......+ |.++.+...++.++...|+..-|..  ++..+++  +.| +++.|..
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~  759 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYY  759 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHH
Confidence            45566666666777777777777777776642 2335666777777777777666666  7777777  556 5577777


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHH
Q 038112          579 TLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       579 l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +...+.+.|+.+.|.+-|....+
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHh
Confidence            77777777777777777776654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.64  E-value=8.1e-11  Score=109.82  Aligned_cols=459  Identities=12%  Similarity=0.112  Sum_probs=309.6

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      .+..+++...++..+.+++. .+....+.....-.+...|+.++|........+.++. +.++|..++-.+....++++|
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea   94 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA   94 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence            34578899999999999884 3445555555555667789999999999998887655 889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      ++.|..+...+  +.|...|..+.-.-.+.++++.....-.+..+..+ .....|..++.++.-.|+...|..+++...+
T Consensus        95 iKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen   95 IKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998863  56777888888888889999998888887776543 3556788889999999999999999999887


Q ss_pred             CC-CCcCHHHHHHH------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112          270 SG-IFVDAVTYNAM------IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCN  342 (625)
Q Consensus       270 ~~-~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  342 (625)
                      .. -.|+...+...      .....+.|.+++|.+.+......-......-..-...+.+.+++++|..++..++..  .
T Consensus       172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n  249 (700)
T KOG1156|consen  172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N  249 (700)
T ss_pred             hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence            64 24555554332      234567788899988887766554444555556677888999999999999999998  4


Q ss_pred             CChhhHHHH-HHHHHhcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 038112          343 ADSTTHGVL-INGLCKNGYLNKAI-QILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFL  420 (625)
Q Consensus       343 ~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  420 (625)
                      ||...|... ..++.+..+.-++. .++....+                  . .+........-+.......-.+....+
T Consensus       250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~------------------~-y~r~e~p~Rlplsvl~~eel~~~vdky  310 (700)
T KOG1156|consen  250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSE------------------K-YPRHECPRRLPLSVLNGEELKEIVDKY  310 (700)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh------------------c-CcccccchhccHHHhCcchhHHHHHHH
Confidence            555555544 44443222222222 44442211                  1 110100001111111112223444556


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH----CC----------CCCCHh--hHHHHHHHHhccCCH
Q 038112          421 FKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE----KG----------WKPDMI--TYSLLINGLCQSKKI  484 (625)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~~~~  484 (625)
                      +....+.|+++   ++..+...|-.-...+-..++...+..    .|          -+|...  ++..++..+-..|++
T Consensus       311 L~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~  387 (700)
T KOG1156|consen  311 LRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY  387 (700)
T ss_pred             HHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH
Confidence            66666766543   233333333222222211111111111    11          134433  344567778899999


Q ss_pred             HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038112          485 DMALKLCCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH  563 (625)
Q Consensus       485 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  563 (625)
                      +.|...++..+++  .|+ +..|..-++.+...|++++|..++++..+.+ .+|..+-..-+.-..+.++.++|.++...
T Consensus       388 ~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~sk  464 (700)
T KOG1156|consen  388 EVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSK  464 (700)
T ss_pred             HHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHH
Confidence            9999999999886  455 4566667788999999999999999999874 55666655778888899999999999998


Q ss_pred             HHHcCCCC-----CHH-HHHHH--HHHHhhcCChHHHHHHHHHHH
Q 038112          564 ILEERLRP-----DII-SYNIT--LKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       564 ~~~~~~~p-----~~~-~~~~l--~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      ..+.|...     +.. .|..+  +.+|.+.|++-+|++=|...-
T Consensus       465 FTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  465 FTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             hhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            88866421     111 23333  347888888888887666553

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=2.2e-12  Score=109.54  Aligned_cols=291  Identities=16%  Similarity=0.126  Sum_probs=222.5

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 038112          288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD---STTHGVLINGLCKNGYLNKA  364 (625)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a  364 (625)
                      -+++.++|.+.|-+|.+.++....+...|.+.|.+.|..|.|+++...+.+...-+.   ......+..-|...|-++.|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            457788999999999998888888889999999999999999999888877621111   12234566778889999999


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHH
Q 038112          365 IQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVV----SYNTLI  440 (625)
Q Consensus       365 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~  440 (625)
                      +.+|..+                  ...+ .--......++..|-...+|++|+++-+++.+.+..+...    .|.-+.
T Consensus       127 E~~f~~L------------------~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         127 EDIFNQL------------------VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHHHHHH------------------hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            9998843                  3221 1134466778899999999999999999998876544322    455666


Q ss_pred             HHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 038112          441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVE  520 (625)
Q Consensus       441 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  520 (625)
                      ..+....+.+.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.+
T Consensus       188 q~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         188 QQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            66777889999999999998863 23445556778889999999999999999999765555678889999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---hcCChHHHHHHHH
Q 038112          521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLC---SCSRMSDAFEFLN  597 (625)
Q Consensus       521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~  597 (625)
                      +....+.++.+.  .+....-..+...-....-.+.|..++.+-+.  -+|+...+..++..-.   .-|+..+.+..++
T Consensus       267 ~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr  342 (389)
T COG2956         267 EGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLR  342 (389)
T ss_pred             HHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence            999999999986  34555555666655555556777777766666  5899999998887544   2366888888999


Q ss_pred             HHHHC
Q 038112          598 DALCR  602 (625)
Q Consensus       598 ~~~~~  602 (625)
                      +|+..
T Consensus       343 ~mvge  347 (389)
T COG2956         343 DMVGE  347 (389)
T ss_pred             HHHHH
Confidence            98743

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-10  Score=110.33  Aligned_cols=422  Identities=13%  Similarity=0.035  Sum_probs=281.3

Q ss_pred             CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh-
Q 038112          165 GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT-  243 (625)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-  243 (625)
                      .+..++..|..+.-++...|+++.+.+.|++....  .......|..+...+...|.-..|..+++........|+..+ 
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            35567888888888999999999999999998654  334556789999999999999999999988765543344333 


Q ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCC
Q 038112          244 YCSFIHGLC-KAGNVEGAERVYREMVES--GI--FVDAVTYNAMIDGFCRA-----------GKIKECFELWEVMGRKGC  307 (625)
Q Consensus       244 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~  307 (625)
                      +......|. +.+.+++++.+-.+++..  +.  ...+..+..+.-+|...           ....++++.+++..+.++
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~  475 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP  475 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence            333333333 457788888877777662  11  11334444444444432           124678888999999999


Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 038112          308 LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVN  387 (625)
Q Consensus       308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~  387 (625)
                      .|+.+...+..-|+..++.+.|.+..++....+..-+...|..+.-.+...+++..|+.+.+....              
T Consensus       476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~--------------  541 (799)
T KOG4162|consen  476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE--------------  541 (799)
T ss_pred             CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------------
Confidence            999999999999999999999999999999987777899999999999999999999999985332              


Q ss_pred             HHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCC
Q 038112          388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWK  465 (625)
Q Consensus       388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~  465 (625)
                         ..+.  |-.....-+..-...++.+++......+... +. +....       ...++-...++....+.-.  ...
T Consensus       542 ---E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~~~~-------q~~~~~g~~~~lk~~l~la~~q~~  607 (799)
T KOG4162|consen  542 ---EFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AEYGV-------QQTLDEGKLLRLKAGLHLALSQPT  607 (799)
T ss_pred             ---Hhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hhhhH-------hhhhhhhhhhhhhcccccCccccc
Confidence               1111  1111111122223356777776666655431 00 00000       0111122222222222111  011


Q ss_pred             CCHhhHHHHHHHHh-cc--CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 038112          466 PDMITYSLLINGLC-QS--KKIDMALKLCCQFLQKGFTPD------VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP  536 (625)
Q Consensus       466 ~~~~~~~~l~~~~~-~~--~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  536 (625)
                      -...++..+..-.. +.  -..+..   +...... ..|+      ...|......+.+.++.++|...+.++... .+-
T Consensus       608 ~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l  682 (799)
T KOG4162|consen  608 DAISTSRYLSSLVASQLKSAGSELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPL  682 (799)
T ss_pred             ccchhhHHHHHHHHhhhhhcccccc---cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chh
Confidence            11222222222111 11  111111   1111111 1222      345666778888999999999999999886 455


Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCChHHHHH--HHHHHHHCCCCCCHHHHHH
Q 038112          537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKGLCSCSRMSDAFE--FLNDALCRGILPTTITWHI  613 (625)
Q Consensus       537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~  613 (625)
                      ....|...+..+...|..++|.+.|..++.  +.|+. .....++.++.+.|+..-|..  ++..+++.+ +.+...|-.
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~  759 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYY  759 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            788889999999999999999999999999  88955 788999999999998887777  999999754 235678889


Q ss_pred             HHHHHHhcCCC
Q 038112          614 LVRAVMNNGAS  624 (625)
Q Consensus       614 l~~~~~~~g~~  624 (625)
                      +...+...|++
T Consensus       760 LG~v~k~~Gd~  770 (799)
T KOG4162|consen  760 LGEVFKKLGDS  770 (799)
T ss_pred             HHHHHHHccch
Confidence            98888888875

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=3.6e-13  Score=134.35  Aligned_cols=251  Identities=11%  Similarity=-0.020  Sum_probs=140.9

Q ss_pred             CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhh---------CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112           16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLI---------DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      +++++|+..|+.+++.+  |.++.++..++.++.         ..+++++|...++++++.+| .+...+..++.++...
T Consensus       275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence            34567777777777766  666766666665443         22346777777777777763 3666666777777777


Q ss_pred             CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      |++++|...|+++.+..                            |.+...+..+...+...|++++|+..++++.+.++
T Consensus       352 g~~~~A~~~~~~Al~l~----------------------------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P  403 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS----------------------------PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP  403 (553)
T ss_pred             cCHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            77777777777664433                            33455566666666667777777777777666633


Q ss_pred             CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112          167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC  245 (625)
Q Consensus       167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  245 (625)
                      . +...+..++..+...|++++|+..++++....  +| +...+..+..++...|++++|...++++....+ .+....+
T Consensus       404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~  479 (553)
T PRK12370        404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVN  479 (553)
T ss_pred             C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHH
Confidence            2 22233333444555666777777766665442  23 233455566666667777777777666554321 1223334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      .+...|...|  +.|...++.+.+..-. ...........|.-.|+.+.+..+ +++.+.
T Consensus       480 ~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        480 LLYAEYCQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             HHHHHHhccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence            4444555555  3555555555443100 111111133444555555555554 555544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.57  E-value=5.1e-11  Score=114.42  Aligned_cols=288  Identities=14%  Similarity=0.156  Sum_probs=213.0

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc--
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN--   86 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--   86 (625)
                      ..++..+|++++|+..+......-  ..........+..+.+.|+.++|..+|..+++++| .+...+..+..+..-.  
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence            378889999999999998855443  56667778889999999999999999999999985 4666777777766333  


Q ss_pred             ---CCchHHHHHHHHhHHhhCCCcch------hhhcCChH-HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHH
Q 038112           87 ---SMPDKALDVFQRMNEIFGCEAGI------LCRKRQFE-KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALA  156 (625)
Q Consensus        87 ---~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  156 (625)
                         ...+.-.++|+.+...+|.....      +.....|. .+..++...+..|+|   .+|..+-..|..........+
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence               25677788899887777765444      33333443 455667777777753   355666555655555555556


Q ss_pred             HHHHHHhC----C----------CCCCc--hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112          157 VFDEMFER----G----------VETNV--VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG  220 (625)
Q Consensus       157 ~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  220 (625)
                      ++......    +          -+|+.  .++..++..|...|++++|++.++..+...  |..+..|..-...+-+.|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCC
Confidence            66655432    1          12333  245667888889999999999999998863  344667888899999999


Q ss_pred             ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH--------HHHHHHHHHHHhcCCH
Q 038112          221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA--------VTYNAMIDGFCRAGKI  292 (625)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~  292 (625)
                      ++.+|.+.++....... .|...-+..+..+.+.|++++|.+++......+..|..        ......+.+|.+.|++
T Consensus       243 ~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999987764 46777777888899999999999999999877643322        1224467789999999


Q ss_pred             HHHHHHHHHHHhc
Q 038112          293 KECFELWEVMGRK  305 (625)
Q Consensus       293 ~~a~~~~~~~~~~  305 (625)
                      ..|++.|..+.+.
T Consensus       322 ~~ALk~~~~v~k~  334 (517)
T PF12569_consen  322 GLALKRFHAVLKH  334 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.57  E-value=2.2e-10  Score=109.66  Aligned_cols=526  Identities=12%  Similarity=0.104  Sum_probs=306.6

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHc
Q 038112           14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK--------CYCPEDVALSVIQAYGK   85 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~   85 (625)
                      .-|+.+.|.+..+.       -.+..+|..+++.+.+-++.+-|.-++..|....        ...+...-..++.....
T Consensus       740 tiG~MD~AfksI~~-------IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie  812 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQF-------IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE  812 (1416)
T ss_pred             EeccHHHHHHHHHH-------HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence            34888888877766       3457889999999999888888877766664321        11122444556666678


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHH---
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF---  162 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---  162 (625)
                      .|..++|..+|.+. +.+...-..|...|.+++|.++-+.=-...   -..+|.....-+...+|.+.|++.|++.-   
T Consensus       813 LgMlEeA~~lYr~c-kR~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ha  888 (1416)
T KOG3617|consen  813 LGMLEEALILYRQC-KRYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHA  888 (1416)
T ss_pred             HhhHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChH
Confidence            89999999999987 444444445778899999988876533222   23456666676777888888888887532   


Q ss_pred             -------hCC---------CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112          163 -------ERG---------VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL  226 (625)
Q Consensus       163 -------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  226 (625)
                             ...         -..|...|......+...|+.+.|+.+|....          -|-.+++..+-.|+.++|-
T Consensus       889 fev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs~VrI~C~qGk~~kAa  958 (1416)
T KOG3617|consen  889 FEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFSMVRIKCIQGKTDKAA  958 (1416)
T ss_pred             HHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhhheeeEeeccCchHHH
Confidence                   111         12255667777777778899999998887653          3556777888889999998


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---------------CC
Q 038112          227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---------------GK  291 (625)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~  291 (625)
                      ++-++-      .|......+.+.|-..|++.+|...|.+...         +...++.|-.+               .+
T Consensus       959 ~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen  959 RIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSD 1023 (1416)
T ss_pred             HHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchh
Confidence            887763      4666677789999999999999998877643         22222222222               22


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH--------HHHc--CCCCChhhHHHHHHHHHhcCCH
Q 038112          292 IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL--------LREK--NCNADSTTHGVLINGLCKNGYL  361 (625)
Q Consensus       292 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l~~~~~~~~~~  361 (625)
                      .-.|-.+|++...       -...-...|-+.|.+.+|+++--.        ++..  +...|+...+.....+....++
T Consensus      1024 ~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1024 LVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred             HHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence            2333344443321       122334556677777777665321        1222  3344666777777778888888


Q ss_pred             HHHHHHHHHHHhcC-------CCchHHHHHHHHHHhhCC-CCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038112          362 NKAIQILNEVEEGG-------EGRLADAASLVNRMDKHG-CKLN----AYTCNSLMNGFIQASKLENAIFLFKEMSRKGC  429 (625)
Q Consensus       362 ~~a~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  429 (625)
                      ++|..++-...+-.       ..+..-..++-+.|.... ..|+    ..+...+...|.+.|.+..|-+-|.+.-.+  
T Consensus      1097 ekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-- 1174 (1416)
T KOG3617|consen 1097 EKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-- 1174 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--
Confidence            88888876543321       111111111111221111 1222    234566777888888888887777665331  


Q ss_pred             CCChhhHHHHHHHHhccCCHHHH----------------HHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112          430 SPTVVSYNTLINGLCKVERFGEA----------------YSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ  493 (625)
Q Consensus       430 ~~~~~~~~~l~~~~~~~~~~~~a----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  493 (625)
                             ...++++.+.|+.++.                -.+++.   .++..++.+...++..|.+..-++.--..|+.
T Consensus      1175 -------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQt---lDWq~~pq~mK~I~tFYTKgqafd~LanFY~~ 1244 (1416)
T KOG3617|consen 1175 -------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQT---LDWQDNPQTMKDIETFYTKGQAFDHLANFYKS 1244 (1416)
T ss_pred             -------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhh---cccccChHHHhhhHhhhhcchhHHHHHHHHHH
Confidence                   1223444455554431                222221   12344455555554444443333322222222


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----------ccCChhHHHHHHH
Q 038112          494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF-----------KTGDCDKALEIWN  562 (625)
Q Consensus       494 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~  562 (625)
                      ...-    ...-|..+-.   ..|-.++|.+.+.++...+  .....++.|-.-..           -..|....+.-..
T Consensus      1245 cAqi----Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~ 1315 (1416)
T KOG3617|consen 1245 CAQI----EIEELQTYDK---AMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCT 1315 (1416)
T ss_pred             HHHh----hHHHHhhhhH---HhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            2110    1111211111   1234555556665555432  11222222211111           1236666667777


Q ss_pred             HHHHcCCCCC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112          563 HILEERLRPD----IISYNITLKGLCSCSRMSDAFEFLNDALCRG  603 (625)
Q Consensus       563 ~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  603 (625)
                      .+++...-||    ...|..++..+....++..|.+.+++|..+-
T Consensus      1316 ~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1316 TLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred             HHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence            7777544443    3577888899999999999999999998654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=7.4e-10  Score=102.40  Aligned_cols=456  Identities=13%  Similarity=0.075  Sum_probs=229.1

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      ..|++++|.+...+++..+ |.+...+..-+.++.+.+.+++|+.+.+.-...  ..+...+..-+-|+.+.+..++|+.
T Consensus        24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk  100 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALK  100 (652)
T ss_pred             cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHH
Confidence            4455555555555555554 445555666666667777777777444432211  1111111233445556777777777


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNERE-KDSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      .++-+.     +.+..+...-...+.+.|++++|+++|+.+.+.+.+ .+...-..++.+-.    ...+. +.+.. ..
T Consensus       101 ~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v-~~  169 (652)
T KOG2376|consen  101 TLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV-PE  169 (652)
T ss_pred             HHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc-cC
Confidence            666221     122335555566677777777777777777654321 11111111111100    00111 11111 11


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------Cc--------HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112          271 GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-------LN--------VVSYNILIRGLLENGKVDEAISIWEL  335 (625)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~  335 (625)
                      -...+...+......+...|++.+|+++++...+.+.       .+        ..+...+..++...|+.++|..++..
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~  249 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD  249 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            1111233344455566677777777777776622110       01        11233455666677888888888887


Q ss_pred             HHHcCCCCChhhHHHHHH---HHHhcCCH-H-HHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH-HHHHHHHH
Q 038112          336 LREKNCNADSTTHGVLIN---GLCKNGYL-N-KAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC-NSLMNGFI  409 (625)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~---~~~~~~~~-~-~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~  409 (625)
                      .+...+. |........+   +.....++ + .++..++....   ...+....   .+...  ....... +.++..  
T Consensus       250 ~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~---~l~~~~l~---~Ls~~--qk~~i~~N~~lL~l--  318 (652)
T KOG2376|consen  250 IIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF---KLAEFLLS---KLSKK--QKQAIYRNNALLAL--  318 (652)
T ss_pred             HHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHH---HhHHHHHH---HHHHH--HHHHHHHHHHHHHH--
Confidence            7777533 4433222222   11111111 1 11111111000   00000000   11100  0011111 122222  


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 038112          410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC--KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA  487 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  487 (625)
                      ..+..+.+.++...+...  .|. ..+..++....  +......+..++...-+....-...+....+......|+++.|
T Consensus       319 ~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A  395 (652)
T KOG2376|consen  319 FTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA  395 (652)
T ss_pred             HhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence            234445555544443322  222 23333333322  2224677777777776642222244555666777889999999


Q ss_pred             HHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHccCC
Q 038112          488 LKLCC--------QFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR------NCVPNLVTYNTLMDGLFKTGD  553 (625)
Q Consensus       488 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~  553 (625)
                      .+++.        .+.+.+..  +.+...+...+.+.++-+.|..++.+.+.-      +-..-..++..++..-.+.|+
T Consensus       396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~  473 (652)
T KOG2376|consen  396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN  473 (652)
T ss_pred             HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence            99998        55554433  344555666777777766676666665532      111113345555566667899


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          554 CDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       554 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      .++|..+++++.+. -++|..+...++.+|++. +.+.|..+-+.+
T Consensus       474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            99999999999983 234778888888888775 567777776655

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.55  E-value=1.5e-12  Score=110.64  Aligned_cols=224  Identities=11%  Similarity=0.012  Sum_probs=147.0

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      |.+.|-+.+|.+.|+..+..-  |-+.+|..+..+|.+..+...|+.+|.+..+. .|-|+....-+++.+...++.++|
T Consensus       233 ylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a  309 (478)
T KOG1129|consen  233 YLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA  309 (478)
T ss_pred             HHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence            566667777777776666653  55666666677777777777777777766665 343444445566666667777777


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      .++|+...+..  +.++.+...+...|.-.++.+-|+..++++++.|+ .++..|+.+.-+|.-.++++-++..|.+.+.
T Consensus       310 ~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls  386 (478)
T KOG1129|consen  310 LQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS  386 (478)
T ss_pred             HHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence            77777766653  44555555555666666777777777777777665 3666677777777777777777777666665


Q ss_pred             CCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          270 SGIFV--DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       270 ~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      ..-.|  -..+|..+.......|++..|...|+.....++....+++.|...-.+.|++++|..++......
T Consensus       387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            43222  24566666666666777777777777777666667777777777777777777777776666554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.4e-09  Score=93.64  Aligned_cols=293  Identities=14%  Similarity=0.107  Sum_probs=221.3

Q ss_pred             cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112          254 AGNVEGAERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI  332 (625)
Q Consensus       254 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  332 (625)
                      .++...+...+-.+... -++-+......+..++...|+.++|+..|+.....+|.+..........+...|+.+....+
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L  288 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL  288 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence            34444444444333322 24557788888999999999999999999999998888888888888888899999998888


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 038112          333 WELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQAS  412 (625)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  412 (625)
                      ...+.... ......|..-+.......+++.|+.+-++                  .++... .+...+-.-...+...+
T Consensus       289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK------------------~I~~~~-r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK------------------CIDSEP-RNHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH------------------HhccCc-ccchHHHhccHHHHhcc
Confidence            88777653 11333444445566677788888877774                  333221 23444545556788899


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHhcc-CCHHHHHHH
Q 038112          413 KLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI-NGLCQS-KKIDMALKL  490 (625)
Q Consensus       413 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~~~A~~~  490 (625)
                      +.++|.-.|+...... +-+..+|..++..|...|++.+|..+-+...+. ++.+..++..+. ..|.-. .--++|.++
T Consensus       349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            9999999999988763 237789999999999999999999888877664 455666666663 333332 234789999


Q ss_pred             HHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112          491 CCQFLQKGFTPD-VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL  569 (625)
Q Consensus       491 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  569 (625)
                      +++.+..  .|+ ....+.++..+...|..++++.++++...  ..||....+.|+..+...+.+.+|...|..++.  +
T Consensus       427 ~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~  500 (564)
T KOG1174|consen  427 AEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q  500 (564)
T ss_pred             HHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence            9988875  454 56778888999999999999999999988  478999999999999999999999999999998  7


Q ss_pred             CCCHH
Q 038112          570 RPDII  574 (625)
Q Consensus       570 ~p~~~  574 (625)
                      .|+..
T Consensus       501 dP~~~  505 (564)
T KOG1174|consen  501 DPKSK  505 (564)
T ss_pred             Cccch
Confidence            88543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.54  E-value=7.2e-10  Score=108.60  Aligned_cols=555  Identities=13%  Similarity=0.023  Sum_probs=303.5

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112           15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD   94 (625)
Q Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   94 (625)
                      .++...|+..|-++++.+  +.-..+|..++..|..-.+...|.++|..+-..+ +.+.......+..|++..+++.|..
T Consensus       471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~  547 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE  547 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence            356788999999999988  8889999999999998889999999999999987 4577888899999999999999998


Q ss_pred             HHHHhHH---------hhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           95 VFQRMNE---------IFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        95 ~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      ..-...+         .|+...-.+...+++-.|...|+..+..+ |.|...|..++.+|.+.|++..|+++|.++...+
T Consensus       548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence            8444322         23332333778899999999999999887 6788999999999999999999999999988763


Q ss_pred             CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----CCcchHHHHHHHHHhcCChhhHHHHHHHHH-------
Q 038112          166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY-----PNVVTYNVMINGLCKCGRFDECLEMWDRMK-------  233 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------  233 (625)
                      +. +...-.-.....+..|.+.+|...+..+.......     .-..++-.+...+...|-..+|..+++..+       
T Consensus       627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l  705 (1238)
T KOG1127|consen  627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL  705 (1238)
T ss_pred             cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            22 22333334455667899999999988876542100     011122222233333444444444444332       


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCCHH------HHHHHH-HHHHHCCCC--------------------cCHHHHHHHHHHH
Q 038112          234 KNEREKDSFTYCSFIHGLCKAGNVE------GAERVY-REMVESGIF--------------------VDAVTYNAMIDGF  286 (625)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~~~~~~~~--------------------~~~~~~~~l~~~~  286 (625)
                      ......+...|..+..+|.-.-..+      ....++ .+....+.-                    .+..+|..++..|
T Consensus       706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny  785 (1238)
T KOG1127|consen  706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY  785 (1238)
T ss_pred             HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence            2111112222222222211000000      000011 111111111                    1223344444333


Q ss_pred             Hh----c----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038112          287 CR----A----GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKN  358 (625)
Q Consensus       287 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  358 (625)
                      .+    .    .+...|+..+....+....+...|+.|... ...|.+.-+...|-+.....+. ...+|..+.-.+...
T Consensus       786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n  863 (1238)
T KOG1127|consen  786 LRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLEN  863 (1238)
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEEec
Confidence            33    1    122345555555555555566666665554 4445555555555444443222 444555555566666


Q ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCChh
Q 038112          359 GYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR----KGCSPTVV  434 (625)
Q Consensus       359 ~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~  434 (625)
                      .+++.|...|....                  .. .|.+...|-.....-...|+.-++..+|..-..    .|-.++..
T Consensus       864 ~d~E~A~~af~~~q------------------SL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~  924 (1238)
T KOG1127|consen  864 QDFEHAEPAFSSVQ------------------SL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ  924 (1238)
T ss_pred             ccHHHhhHHHHhhh------------------hc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence            66666666665322                  22 222444454444444455666666666554211    12233333


Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHC---------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHH
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEK---------GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK-GFTPDVT  504 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  504 (625)
                      .|-.........|+.++-+...+++...         +.+.+...|...+....+.+.+..|.++..+.+.. ...-+..
T Consensus       925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen  925 YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred             HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333333444555555444333332211         22333445555555555556666665555554320 0011222


Q ss_pred             HHH----HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH----HHH
Q 038112          505 MYN----ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI----ISY  576 (625)
Q Consensus       505 ~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~  576 (625)
                      .|+    .+.+.+...|.++.|..-+......   .+..+...-+. ..-.|+++++.+.|++++.  +..+.    ...
T Consensus      1005 qynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt~l~-lFfkndf~~sl~~fe~aLs--is~se~d~vvLl 1078 (1238)
T KOG1127|consen 1005 QYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGTDLT-LFFKNDFFSSLEFFEQALS--ISNSESDKVVLL 1078 (1238)
T ss_pred             hhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhhhHH-HHHHhHHHHHHHHHHHHhh--hcccccchhhhh
Confidence            222    3344555566666554433322211   11111111111 1345677777777777776  22211    234


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          577 NITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       577 ~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ..++.+....+..+.|...+-+...
T Consensus      1079 ~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHH
Confidence            4455555566666677766666654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.3e-09  Score=99.20  Aligned_cols=441  Identities=14%  Similarity=0.083  Sum_probs=261.3

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112          142 INGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR  221 (625)
Q Consensus       142 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  221 (625)
                      +..+...+++++|.+...++...+ +.+...+..-+.++++.+.|++|+.+.+.-..   ...+...+-.-+-+..+.+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHccc
Confidence            455667899999999999999885 55777788888899999999999966554221   11111121233456678999


Q ss_pred             hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112          222 FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFV-DAVTYNAMIDGFCRAGKIKECFELWE  300 (625)
Q Consensus       222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  300 (625)
                      .++|+..++-..    ..+..+...-.+.+.+.|++++|+.+|+.+.+++.+- +...-..++.+-..    -.+. +.+
T Consensus        95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q  165 (652)
T KOG2376|consen   95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQ  165 (652)
T ss_pred             HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHH
Confidence            999999998332    2344477777888999999999999999998875431 11222222221111    1111 222


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCh------h-hHHHHHHHHHhcCCHHHHHH
Q 038112          301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN-------CNADS------T-THGVLINGLCKNGYLNKAIQ  366 (625)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~------~-~~~~l~~~~~~~~~~~~a~~  366 (625)
                      ........+-..+......+...|++.+|+++++.....+       ...+.      . .-..+.-++-..|+..+|..
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~  245 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS  245 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            2222222245556667778889999999999999883321       11111      1 12334556778899999999


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCH-H-HHHHHHH------------HHHhCCCCCC
Q 038112          367 ILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKL-E-NAIFLFK------------EMSRKGCSPT  432 (625)
Q Consensus       367 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~-~a~~~~~------------~~~~~~~~~~  432 (625)
                      ++..+......+..               ......|.++. .....++ + .+...++            .+...  .-.
T Consensus       246 iy~~~i~~~~~D~~---------------~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk~  307 (652)
T KOG2376|consen  246 IYVDIIKRNPADEP---------------SLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QKQ  307 (652)
T ss_pred             HHHHHHHhcCCCch---------------HHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HHH
Confidence            98865443322110               01111122221 1111111 1 1111111            11111  001


Q ss_pred             hhhH-HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh--ccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112          433 VVSY-NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC--QSKKIDMALKLCCQFLQKGFTPDVTMYNIL  509 (625)
Q Consensus       433 ~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  509 (625)
                      .... +.++..|  .+..+.+.++......  ..|.. .+..++..+.  +...+..+.+++....+....-...+....
T Consensus       308 ~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~  382 (652)
T KOG2376|consen  308 AIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR  382 (652)
T ss_pred             HHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence            1112 2333333  3334444444433322  23332 2333333322  222577788888877765333235566677


Q ss_pred             HHHHHcCCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCH----HH
Q 038112          510 IHGLCSAGKVEDALQLYS--------NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE--RLRPDI----IS  575 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~  575 (625)
                      +......|+++.|++++.        .+.+.+  -.+.+...+...+.+.++.+.|..++.+++..  ...+..    .+
T Consensus       383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~  460 (652)
T KOG2376|consen  383 AQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL  460 (652)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence            788889999999999999        555433  34556667778888888888888888887762  112222    23


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038112          576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNN  621 (625)
Q Consensus       576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  621 (625)
                      +..++..-.+.|+-++|..+++++.+. .++|..+...++.+|++.
T Consensus       461 ~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  461 MREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence            444445555679999999999999975 356778888899888764

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.53  E-value=3.2e-11  Score=103.45  Aligned_cols=313  Identities=12%  Similarity=0.009  Sum_probs=211.9

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      +|+.-++..|.+..|+..|..++..+  |.+-.++...+..|+..|+...|+.-+..++...| .-......-+..+.++
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp-DF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP-DFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc-cHHHHHHHhchhhhhc
Confidence            45566666777777777777776655  77777777777777777777777777777777642 2233444555666777


Q ss_pred             CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      |.++.|..-|+.+++..|+....       .+|..-+..+.+      .......+..+...|+...|+.....+++.. 
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~-------~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-  185 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLV-------LEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-  185 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchh-------HHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence            77777777777776655543222       111111111110      1122223344556788888888888888773 


Q ss_pred             CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh---
Q 038112          167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT---  243 (625)
Q Consensus       167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---  243 (625)
                      +-|...+..-..+|...|+...|+.-+....+..  ..+...+..+-..+..-|+.+.++..+++.++.++  |...   
T Consensus       186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp--dHK~Cf~  261 (504)
T KOG0624|consen  186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP--DHKLCFP  261 (504)
T ss_pred             cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc--chhhHHH
Confidence            4477777778888888888888888777776653  44556666677778888888888888888876543  3221   


Q ss_pred             -HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q 038112          244 -YCSF---------IHGLCKAGNVEGAERVYREMVESGIFVD---AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNV  310 (625)
Q Consensus       244 -~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  310 (625)
                       |..+         +......++|.++++..+..++..+...   ...+..+..++...+++.+|+....++....|.++
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv  341 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV  341 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence             1111         2345677888888888888887754312   23345566677778889999999999988888888


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          311 VSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       311 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      .++..-..+|.-...++.|+.-|+...+.+
T Consensus       342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            999888999998889999999999888874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=4.2e-12  Score=107.98  Aligned_cols=256  Identities=13%  Similarity=0.040  Sum_probs=212.1

Q ss_pred             hhhcCChHHHHHHHHHHHHC---------CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEK---------GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGF  180 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  180 (625)
                      +...++.+.|-........-         +...|-+--+.+..+|.+.|.+.+|...|+...+.  .|-+.||..|.+.|
T Consensus       189 fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY  266 (478)
T KOG1129|consen  189 FYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVY  266 (478)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHH
Confidence            56677777776544433221         11123333466788999999999999999998887  55778999999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 038112          181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGA  260 (625)
Q Consensus       181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  260 (625)
                      -+..+...|+.++.+.++.  +|.++.......+.+-..++.++|.++++...+..+ .+++....+...|.-.++++-|
T Consensus       267 ~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~A  343 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMA  343 (478)
T ss_pred             HHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHH
Confidence            9999999999999998876  455666666777889999999999999999988764 5777777788888899999999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--cHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          261 ERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC-L--NVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      +..|+++++.|+. ++..|..+.-+|.-.++++-++.-|++...... +  -..+|..+..+....|++..|.+.|+-.+
T Consensus       344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL  422 (478)
T KOG1129|consen  344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL  422 (478)
T ss_pred             HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence            9999999999987 899999999999999999999999999876543 2  67889999999999999999999999998


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          338 EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       338 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  372 (625)
                      ..+.. ....++.+.-.-.+.|+.+.|..++....
T Consensus       423 ~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  423 TSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             ccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            88544 56778888888899999999999998543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.52  E-value=2e-09  Score=103.65  Aligned_cols=297  Identities=14%  Similarity=0.071  Sum_probs=185.3

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHH
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKA  119 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A  119 (625)
                      .+......+...|++++|++.++...+.- .....+.-..+..+.+.|+.++|...+..+                    
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~L--------------------   64 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYREL--------------------   64 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence            34444555666677777777766655542 223344455666666666666666666665                    


Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh-HHHHHH
Q 038112          120 KRFLNSLWEKGLKPDVYSYGTVINGLVK-----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM-RAKEIW  193 (625)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~  193 (625)
                             ++++ |.|..-|..+..+..-     ..+.+....+|+++...-  |.......+.-.+..-..+. .+...+
T Consensus        65 -------i~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl  134 (517)
T PF12569_consen   65 -------IDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYL  134 (517)
T ss_pred             -------HHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHH
Confidence                   4454 2333334444444321     124556677777776552  23333322322222212222 233444


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC--------------CCCCChh--hHHHHHHHHHhcCCH
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN--------------EREKDSF--TYCSFIHGLCKAGNV  257 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~~~~  257 (625)
                      ......| +|   .+|+.+-..|.......-..+++......              .-+|+..  ++..+.+.|-..|++
T Consensus       135 ~~~l~Kg-vP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~  210 (517)
T PF12569_consen  135 RPQLRKG-VP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY  210 (517)
T ss_pred             HHHHhcC-Cc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH
Confidence            4444443 22   25555555555444444444555444321              0123332  446667888899999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      ++|++..++.+++.+. .+..|..-++.+-+.|++++|.+.++.....+..|...-+..+..+.+.|++++|.+++....
T Consensus       211 ~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft  289 (517)
T PF12569_consen  211 EKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT  289 (517)
T ss_pred             HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence            9999999999987433 478888889999999999999999999999988888888899999999999999999998887


Q ss_pred             HcCCCCChhh--------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          338 EKNCNADSTT--------HGVLINGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       338 ~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~  372 (625)
                      ..+..|....        ......+|.+.|++..|+..+..+.
T Consensus       290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7764332221        1334678889999999998887544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.51  E-value=1.2e-11  Score=123.49  Aligned_cols=246  Identities=11%  Similarity=0.058  Sum_probs=175.6

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh---------cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK---------SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG  184 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  184 (625)
                      +++++|+.+|+++++.+ |.+...|..+..++..         .+++++|...++++.+.++. +...+..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence            34678888888888876 4456666666655442         23478899999999888543 6778888888888899


Q ss_pred             ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          185 DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY  264 (625)
Q Consensus       185 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  264 (625)
                      ++++|...|+++.+.+  |.+...+..+..++...|++++|+..+++..+..+. +...+..++..+...|++++|+..+
T Consensus       353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence            9999999999988864  445667888888899999999999999998877543 3333344455566788899999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038112          265 REMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD  344 (625)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  344 (625)
                      +++.....+-++..+..+..++...|++++|...+..+....+.+....+.+...+...|  +.+...++.+.+..-. .
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~  506 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-I  506 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-h
Confidence            888765433345567778888889999999999998887776667777888888888777  4777777766553211 1


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHH
Q 038112          345 STTHGVLINGLCKNGYLNKAIQI  367 (625)
Q Consensus       345 ~~~~~~l~~~~~~~~~~~~a~~~  367 (625)
                      ..........+.-.|+.+.+..+
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~  529 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW  529 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH
Confidence            11112234445556666665555

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=4.5e-10  Score=102.82  Aligned_cols=99  Identities=10%  Similarity=-0.148  Sum_probs=86.2

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      ++...+.|+++.|+..|-.++..+  |++-..|.....+++..|+|++|.+--.+..+.+ |.-+..|...+.++.-.|+
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhccc
Confidence            466778899999999999999888  8888888889999999999999999988888886 4577899999999999999


Q ss_pred             chHHHHHHHHhHHhhCCCcchh
Q 038112           89 PDKALDVFQRMNEIFGCEAGIL  110 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~~  110 (625)
                      +++|+..|.+-++..|++..++
T Consensus        86 ~~eA~~ay~~GL~~d~~n~~L~  107 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPSNKQLK  107 (539)
T ss_pred             HHHHHHHHHHHhhcCCchHHHH
Confidence            9999999999888777776663

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.3e-08  Score=90.00  Aligned_cols=306  Identities=11%  Similarity=-0.007  Sum_probs=184.3

Q ss_pred             CCCCchhhHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112          166 VETNVVCYNILIDGFFK--KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT  243 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  243 (625)
                      ++|...+....+.++++  .++-..+...+-.+.....++.|+.....+..++...|+.++|+..|++....++ -+...
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~  268 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEA  268 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhh
Confidence            34333333334444433  3455555555554444444677777888888888888888888888888764432 12222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN  323 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  323 (625)
                      .......+.+.|+++....+...+.... +-....|..-+.......+++.|+.+-++..+..+.+...+..-...+...
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence            2223334456788888777777776542 123444544455556677888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHH
Q 038112          324 GKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNS  403 (625)
Q Consensus       324 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  403 (625)
                      +++++|.-.|+...... +.+...|..++..|...|.+.+|.-.-+....              .+     +.+..+...
T Consensus       348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--------------~~-----~~sA~~LtL  407 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--------------LF-----QNSARSLTL  407 (564)
T ss_pred             cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--------------Hh-----hcchhhhhh
Confidence            88888888888777663 22667777888888888888777665553211              11     112233332


Q ss_pred             HH-H-HHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 038112          404 LM-N-GFIQASKLENAIFLFKEMSRKGCSPTV-VSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ  480 (625)
Q Consensus       404 l~-~-~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  480 (625)
                      +. . .+....--++|.++++.....  .|+. ...+.+...+...|+.+.++.+++....  ..||....+.+...+..
T Consensus       408 ~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A  483 (564)
T KOG1174|consen  408 FGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRA  483 (564)
T ss_pred             hcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHH
Confidence            21 1 112222345666666655543  2332 2344555555666666666666666555  35566666666666666


Q ss_pred             cCCHHHHHHHHHHHHhC
Q 038112          481 SKKIDMALKLCCQFLQK  497 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~  497 (625)
                      .+.+++|++.|...+..
T Consensus       484 ~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  484 QNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             hhhHHHHHHHHHHHHhc
Confidence            66666666666666553

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.48  E-value=2.3e-09  Score=105.19  Aligned_cols=480  Identities=12%  Similarity=0.035  Sum_probs=285.0

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                      +++...|+..|-+.+..+ +.-...|..+...|...-+...|.+.|+++.+.+.. +...+..+...|.+..+++.|..+
T Consensus       471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence            445777777777777655 233456788888787777888899999999888543 777888889999999999999988


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      .-...+......-...|....-.|...++...|+.-|+......| .|...|..++.+|...|++..|.++|.++....+
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            554443321111223455566678888999999999998887664 5788899999999999999999999988876532


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhCCCHHHHHHHHHHHH-------H
Q 038112          273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN-------VVSYNILIRGLLENGKVDEAISIWELLR-------E  338 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~  338 (625)
                      . +...-.......+..|++.++...+..+.......       ..++..+...+...|-...+...+++.+       .
T Consensus       628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            2 22223334445567788999988888776543222       2333333333333344444444444332       2


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHH--H----HHHHHH-HHHhcCCCchHH--HHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112          339 KNCNADSTTHGVLINGLCKNGYLN--K----AIQILN-EVEEGGEGRLAD--AASLVNRMDKHGCKLNAYTCNSLMNGFI  409 (625)
Q Consensus       339 ~~~~~~~~~~~~l~~~~~~~~~~~--~----a~~~~~-~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~  409 (625)
                      .....+...|..+..+|.-.-..+  .    ...++. ++.......-.+  ....-..........++.+|..++..|.
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl  786 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL  786 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence            221112333333332221110000  0    011111 111111111111  0000001111111223445555555444


Q ss_pred             h----c----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112          410 Q----A----SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS  481 (625)
Q Consensus       410 ~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  481 (625)
                      +    .    .+...|+..+....+.. ..+...|+.+.-. ...|.+.-+.-.|-+.... .+....+|..+.-.+.+.
T Consensus       787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n  863 (1238)
T KOG1127|consen  787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN  863 (1238)
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence            3    1    23346777777766542 2255667766654 6667777777777666554 244566788888888889


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHccCChhHH
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK----RNCVPNLVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A  557 (625)
                      .+++.|...|....... +.+...|..........|+.-++..+|..-..    .|--+....|..........|+.++-
T Consensus       864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~  942 (1238)
T KOG1127|consen  864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES  942 (1238)
T ss_pred             ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence            99999999999887753 33566666666666677888888888776222    23345555555555556667776665


Q ss_pred             HHHHHHHHHc--------CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          558 LEIWNHILEE--------RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       558 ~~~~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      +...+++-..        +-.| +...|...+...-+.+.+.+|.+...++.
T Consensus       943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4443332211        1344 34677777777778888888888777764

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.46  E-value=5.6e-10  Score=108.00  Aligned_cols=550  Identities=14%  Similarity=0.097  Sum_probs=282.0

Q ss_pred             cCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           30 REPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      +..|+.|+..+|..++..|+..|+.+.|- +|.-|.-.+.|....++..++......++.+.+.+..-   +.+.....+
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~a---Dtyt~Ll~a   92 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLA---DTYTNLLKA   92 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCch---hHHHHHHHH
Confidence            33466677777777777787777777777 66666666556666666666666666666555542111   111122222


Q ss_pred             hhhcCChH---HHHHHHHHHHH----CCC-----------------CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112          110 LCRKRQFE---KAKRFLNSLWE----KGL-----------------KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus       110 ~~~~~~~~---~A~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      |...||..   .+++.++.+..    .|.                 -||..   .++....-.|-++.+++++..+....
T Consensus        93 yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa  169 (1088)
T KOG4318|consen   93 YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSA  169 (1088)
T ss_pred             HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            44444432   22222222211    111                 11211   12222333444555555554443221


Q ss_pred             CCCCchhhHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH
Q 038112          166 VETNVVCYNILIDGFFK-KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTY  244 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  244 (625)
                      .. .+...  .++-+.. ...+++-..+.....    ..|+..++..++.+-...|+.+.|..++.+|.+.|.+.+...|
T Consensus       170 ~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~----e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF  242 (1088)
T KOG4318|consen  170 WN-APFQV--FLRQNVVDNTPVEKLLNMCKSLV----EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF  242 (1088)
T ss_pred             cc-chHHH--HHHHhccCCchHHHHHHHHHHhh----cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence            10 11111  1222222 122333333333322    2588999999999999999999999999999999998888877


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112          245 CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENG  324 (625)
Q Consensus       245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (625)
                      ..++-+   .++...+..+++-|.+.|+.|+..|+...+..+..+|....+.        .+.+....+..-.....-.|
T Consensus       243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg  311 (1088)
T KOG4318|consen  243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRG  311 (1088)
T ss_pred             hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcc
Confidence            777665   8888999999999999999999999988877777755532222        12222222222222222222


Q ss_pred             -----C-----HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCchHH-----HHHHH
Q 038112          325 -----K-----VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGG---EGRLAD-----AASLV  386 (625)
Q Consensus       325 -----~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-----a~~~~  386 (625)
                           +     ..-....+.+..-.|+......|.... -....|+-+...++...+....   .+...+     +...|
T Consensus       312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF  390 (1088)
T KOG4318|consen  312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF  390 (1088)
T ss_pred             cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence                 1     111222222222234333333333322 2333666666666665544322   121111     22223


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHH------------HhCC----CCC---Chh----hHHHHH
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQ---ASKLENAIFLFKEM------------SRKG----CSP---TVV----SYNTLI  440 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~------------~~~~----~~~---~~~----~~~~l~  440 (625)
                      .+.....+   ...+. ...+...   ........+.....            ....    ..|   -..    .-+.++
T Consensus       391 rr~e~~~~---~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~  466 (1088)
T KOG4318|consen  391 RRIERHIC---SRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH  466 (1088)
T ss_pred             HHHHhhHH---HHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence            22222111   11111 1111111   11111111111111            1000    000   001    123334


Q ss_pred             HHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCC
Q 038112          441 NGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGK  518 (625)
Q Consensus       441 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~  518 (625)
                      ..+++.-+..+++..-++.... .-+  ..|..++.-+......+.|..+.+++...  .+..+...+..+.+.+.+.+.
T Consensus       467 l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~  543 (1088)
T KOG4318|consen  467 LTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI  543 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence            4444444444444332222221 111  45677777778888888888888776542  223355567778888888888


Q ss_pred             HHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112          519 VEDALQLYSNMKKRN-CVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL  596 (625)
Q Consensus       519 ~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  596 (625)
                      ..++.+++.++.+.- ..|+ ..++..+.......|+.+.-.++.+-+...|+..+    ..++....+.++...|.+..
T Consensus       544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~  619 (1088)
T KOG4318|consen  544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP  619 (1088)
T ss_pred             HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence            888888888887641 1222 34555666666778888887777777776555432    33444455666777777766


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH
Q 038112          597 NDALCRGILPTTITWHILVRA  617 (625)
Q Consensus       597 ~~~~~~~~~~~~~~~~~l~~~  617 (625)
                      +...+. .+|.+.....+.+.
T Consensus       620 e~~~qk-yk~~P~~~e~lcrl  639 (1088)
T KOG4318|consen  620 EPEEQK-YKPYPKDLEGLCRL  639 (1088)
T ss_pred             hHHHHH-hcCChHHHHHHHHH
Confidence            665432 34444444444333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=1e-10  Score=98.34  Aligned_cols=305  Identities=14%  Similarity=0.100  Sum_probs=192.5

Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhc
Q 038112           41 FHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRK  113 (625)
Q Consensus        41 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~  113 (625)
                      +.+++..+.+..++++|++++..-..+++ .+...+..++.+|....+++.|.+.++++-...|.....       +++.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence            34455555666677777777777666653 255666667777777777777777777765555543332       5566


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHH--H--HHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVIN--G--LVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      +.+.+|+.+...|.+.     ....+..++  +  ....+++..+..+.++....   .+..+.....-...+.|+++.|
T Consensus        92 ~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             cccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence            6677777776666542     222222222  1  23578888888888876633   2556667777777899999999


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCCHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC----SFIHGLCKAGNVEGAERVYR  265 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~  265 (625)
                      .+-|+...+.+|+.|- .+|+. .-++.+.|+++.|++...++.++|+...+..-.    -.+.. ...|+   -+.+..
T Consensus       164 vqkFqaAlqvsGyqpl-lAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~  237 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPL-LAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQ  237 (459)
T ss_pred             HHHHHHHHhhcCCCch-hHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHH
Confidence            9999999998877664 35554 446778899999999999999888754333110    00000 00011   011110


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038112          266 EMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREKNCNA  343 (625)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  343 (625)
                      ..       -...++.-...+.+.++++.|.+.+..|..+...  ++.+...+.-.- ..+++.+..+-+.-+++.++ .
T Consensus       238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f  308 (459)
T KOG4340|consen  238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F  308 (459)
T ss_pred             HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence            00       1233444556677888999998888888765443  565555544322 24556666666666666654 4


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          344 DSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       344 ~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                      ...|+..++-.|++..-++.|.+++.
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            56788888888999888888888776

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.46  E-value=3e-11  Score=98.02  Aligned_cols=190  Identities=13%  Similarity=0.050  Sum_probs=120.3

Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcC
Q 038112           42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKR  114 (625)
Q Consensus        42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~  114 (625)
                      ..++..|+..|++..|.+-++++++.+| .+..++..++..|.+.|..+.|.+.|+++.+..|...++       +|.+|
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            3444455555555555555555555542 244455555555555555555555555555544444444       45555


Q ss_pred             ChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          115 QFEKAKRFLNSLWEKG-LKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      .+++|...|++++... ...-..+|..+.-+..+.|+++.|...|++..+.... .+.+...+...+...|++..|...+
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence            5555555555555432 1223456777777777888888888888888877433 5667777888888888888888888


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      +.....+  .++..+.-..|..-...|+.+.+.+.=.++...
T Consensus       197 ~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         197 ERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8877765  367777777778888888888877766666544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=1.1e-10  Score=104.39  Aligned_cols=202  Identities=12%  Similarity=0.043  Sum_probs=168.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038112          396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI  475 (625)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  475 (625)
                      .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            345677888899999999999999999998764 2356678888889999999999999999998863 34566778888


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112          476 NGLCQSKKIDMALKLCCQFLQKGF-TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC  554 (625)
Q Consensus       476 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  554 (625)
                      ..+...|++++|.+.+++...... +.....+..++.++...|++++|...+.+..+.. +.+...+..++..+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence            899999999999999999987422 2345677778899999999999999999999863 44577888999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          555 DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       555 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++|...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999984 233566777778888899999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=7.3e-11  Score=105.58  Aligned_cols=199  Identities=16%  Similarity=0.143  Sum_probs=104.0

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN  214 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  214 (625)
                      ...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+..  +.+...+..+..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~  107 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH
Confidence            3445555555666666666666666665542 2234455555566666666666666666555542  233344555555


Q ss_pred             HHHhcCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112          215 GLCKCGRFDECLEMWDRMKKNER-EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK  293 (625)
Q Consensus       215 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (625)
                      .+...|++++|.+.+++...... ......+..+...+...|++++|...+.+....... +...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence            55666666666666665554221 112233444455555555555555555555544221 3444555555555555555


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      +|...+++.....+.+...+..++..+...|+.++|..+.+.+.
T Consensus       187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555555554433344444455555555555555555544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=3.9e-10  Score=94.95  Aligned_cols=319  Identities=13%  Similarity=0.078  Sum_probs=208.3

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      +.-.|....++..|++.+..-.+..  |.+...+..++.+|....++..|..+|+++....|. -.....-.++.+.+.+
T Consensus        16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQSLYKAC   92 (459)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHHHHHhc
Confidence            3445577889999999988766655  888999999999999999999999999999987543 3334445677788999


Q ss_pred             CchHHHHHHHHhHHhhCC-------CcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112           88 MPDKALDVFQRMNEIFGC-------EAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE  160 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  160 (625)
                      .+..|+.+...+.+...-       ...+.+..+++..+..++++....+   +..+.+.......+.|+++.|.+-|+.
T Consensus        93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa  169 (459)
T KOG4340|consen   93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA  169 (459)
T ss_pred             ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence            999999999887442111       1111667888888988888876544   455555556566789999999999999


Q ss_pred             HHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------Cc---------------chHHHH
Q 038112          161 MFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYP-------------NV---------------VTYNVM  212 (625)
Q Consensus       161 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------------~~---------------~~~~~l  212 (625)
                      ..+.+.-.....| .++-++.+.|+++.|++...+++++| +..             |+               .++|.-
T Consensus       170 AlqvsGyqpllAY-niALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK  247 (459)
T KOG4340|consen  170 ALQVSGYQPLLAY-NLALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK  247 (459)
T ss_pred             HHhhcCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence            8887433233344 45667778899999999888887765 211             11               123444


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112          213 INGLCKCGRFDECLEMWDRMKKN-EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK  291 (625)
Q Consensus       213 ~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (625)
                      ...+.+.|+++.|.+.+..|.-+ ..+.|+.|...+.-.- ..+++....+-+.-++..++. ...||..++-.|++..-
T Consensus       248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNey  325 (459)
T KOG4340|consen  248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEY  325 (459)
T ss_pred             hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHH
Confidence            45566777888887777776532 1234566655543322 234455555555556655443 45677777777888777


Q ss_pred             HHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112          292 IKECFELWEVMGRKGCL--NVVSYNILIRGLLENGKVDEAISIWELL  336 (625)
Q Consensus       292 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  336 (625)
                      ++-|-+++.+-......  +...|+.+-......-..+++.+-++.+
T Consensus       326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            77777766553322111  3333333322223334455555544433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.7e-07  Score=91.14  Aligned_cols=509  Identities=13%  Similarity=0.129  Sum_probs=272.8

Q ss_pred             HHHHHHHHHccCCchHHHHHHHHhHHhhC----------CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 038112           76 ALSVIQAYGKNSMPDKALDVFQRMNEIFG----------CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL  145 (625)
Q Consensus        76 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (625)
                      +..+++.|.+.|-+..|++.|..+.+.-.          .+.-.+...-.++++.+++..|+..+++.|..+...+..-|
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky  688 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY  688 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            56788999999999999998887755211          11112777788999999999999988888887777777767


Q ss_pred             HhcCChhhHHHHHHHHHhC-----------CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHH-----------hCCCC-
Q 038112          146 VKSGDLLGALAVFDEMFER-----------GVETNVVCYNILIDGFFKKGDYMRAKEIWERLV-----------METSV-  202 (625)
Q Consensus       146 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~~~~-  202 (625)
                      ...=-.+..+++|+.....           ++.-|+......+.+.++.|++.+..++.+.-.           +.... 
T Consensus       689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~  768 (1666)
T KOG0985|consen  689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT  768 (1666)
T ss_pred             HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence            6665667777778776543           245678888888899999999998887755321           11000 


Q ss_pred             --CC-----CcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC-----------CCChhhHHH-------------HHHHH
Q 038112          203 --YP-----NVVTYNVMINGLCKCGRFDECLEMWDRMKKNER-----------EKDSFTYCS-------------FIHGL  251 (625)
Q Consensus       203 --~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~-------------l~~~~  251 (625)
                        .|     |..-+-.=+..|.-.++..+-+++|-+-..-+.           .-+......             +..-.
T Consensus       769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev  848 (1666)
T KOG0985|consen  769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV  848 (1666)
T ss_pred             ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence              01     111111111122222333333333322111000           011111111             22233


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHH---------HHHHHHhcCC--------------
Q 038112          252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE-CFE---------LWEVMGRKGC--------------  307 (625)
Q Consensus       252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~---------~~~~~~~~~~--------------  307 (625)
                      -+.++..--...++..+..|.. ++.+++.+...|..+++-.+ -++         +=+-..+++|              
T Consensus       849 EkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~  927 (1666)
T KOG0985|consen  849 EKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL  927 (1666)
T ss_pred             HhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence            3455556666677777777766 88999999988887654222 111         1111122222              


Q ss_pred             ------CcHHHHHHHHHHHHhCCCHHHHHH-----------HHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          308 ------LNVVSYNILIRGLLENGKVDEAIS-----------IWELLREKNC--NADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       308 ------~~~~~~~~l~~~~~~~~~~~~a~~-----------~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                            .....|....+.+....+.+-=.+           +.++..+.++  ..|+...+.-+.++...+-..+-++++
T Consensus       928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen  928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred             HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence                  012234444555555555433222           2233333322  235556666778888888888888888


Q ss_pred             HHHHhcCCC------------------chHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 038112          369 NEVEEGGEG------------------RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG--  428 (625)
Q Consensus       369 ~~~~~~~~~------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--  428 (625)
                      +++.-....                  +.....+.++++...+.       -.+...+...+-+++|..+|+.....+  
T Consensus      1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-------~~ia~iai~~~LyEEAF~ifkkf~~n~~A 1080 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-------PDIAEIAIENQLYEEAFAIFKKFDMNVSA 1080 (1666)
T ss_pred             HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-------hhHHHHHhhhhHHHHHHHHHHHhcccHHH
Confidence            887654411                  11112222222221111       112333445556677777776542110  


Q ss_pred             -------------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112          429 -------------------CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK  489 (625)
Q Consensus       429 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  489 (625)
                                         --..+..|..+..+-.+.|...+|++-|-+.      .|+..|..++....+.|.+++-.+
T Consensus      1081 ~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1081 IQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred             HHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence                               0012334555555555555555554433222      134455555566666666666655


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112          490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL  569 (625)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  569 (625)
                      .+....++.-.|...  ..|+-+|++.++..+-.+++       ..||......++.-|...|.++.|.-+|...     
T Consensus      1155 yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1155 YLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred             HHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence            555555543333332  23455555555555444332       2355555555566666666665555544433     


Q ss_pred             CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112          570 RPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG  622 (625)
Q Consensus       570 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  622 (625)
                          ..|..+...+...|++..|..-.+++      .+..+|..+--+|...+
T Consensus      1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence                23555666666666666666555444      35567887777776543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.42  E-value=4.9e-08  Score=95.04  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=132.4

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA   82 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   82 (625)
                      +|..+|+--+..+|+.+.|- +|..+ +..-.|.....+..+.......++.+.+.           .|.+++|..+...
T Consensus        26 vtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a   92 (1088)
T KOG4318|consen   26 VTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA   92 (1088)
T ss_pred             hhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence            45667777788899999998 88764 33334666777777777777777776664           3567888888888


Q ss_pred             HHccCCchHHHHHHHH-hHH---hhC----------------CC----cch------hhhcCChHHHHHHHHHHHHCCCC
Q 038112           83 YGKNSMPDKALDVFQR-MNE---IFG----------------CE----AGI------LCRKRQFEKAKRFLNSLWEKGLK  132 (625)
Q Consensus        83 ~~~~~~~~~A~~~~~~-~~~---~~~----------------~~----~~~------~~~~~~~~~A~~~~~~~~~~~~~  132 (625)
                      |...||... .+..++ +..   .+.                +.    +++      ..-.|-++.+++++..+.-... 
T Consensus        93 yr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~-  170 (1088)
T KOG4318|consen   93 YRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW-  170 (1088)
T ss_pred             HHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc-
Confidence            888887765 333332 211   100                00    000      2233444444444433321110 


Q ss_pred             CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112          133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM  212 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  212 (625)
                      ..+...  +++-+..  ...-..++........-.|++.+|..++.+-...|+.+.|..++..|.+.+ ++-+..-|..|
T Consensus       171 ~~p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~HyFwpL  245 (1088)
T KOG4318|consen  171 NAPFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHYFWPL  245 (1088)
T ss_pred             cchHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCcccccchhh
Confidence            001111  1222221  112222222222222114677788888888888888888888888887776 66666555555


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038112          213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG  255 (625)
Q Consensus       213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  255 (625)
                      +-+   .++...+..++.-|...|+.|+..|+...+..+..+|
T Consensus       246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            433   6777777777777777788888877776665555533

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7e-09  Score=95.21  Aligned_cols=439  Identities=15%  Similarity=0.071  Sum_probs=236.1

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      .+..|+++.|+.+|...+..+ |+|...|..-..+++..|++++|++=-.+-++..+. -+..|.....++.-.|++++|
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~eA   89 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYEEA   89 (539)
T ss_pred             hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHHHH
Confidence            445667777777777767665 557777777777888888888877766666555221 356677788888888888888


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH---HHHHHHHhC---CCCCChhhHHHHHHHHHhcC-------C
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL---EMWDRMKKN---EREKDSFTYCSFIHGLCKAG-------N  256 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~-------~  256 (625)
                      +..|..-++..  +.+...++.+..++..........   .++..+...   ........|..++..+-+..       +
T Consensus        90 ~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~  167 (539)
T KOG0548|consen   90 ILAYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN  167 (539)
T ss_pred             HHHHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence            88888877753  445555666665551110000000   000000000   00000111222222111100       0


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCHH----HHHHHHHHHHhc--CCCcHHHHHHHHHHHHhCCCHHHH
Q 038112          257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCR-AGKIK----ECFELWEVMGRK--GCLNVVSYNILIRGLLENGKVDEA  329 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~----~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a  329 (625)
                      .....+..-.+...+.  .  .+......... ...+.    .......+....  ...-......++....+..+++.+
T Consensus       168 d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  168 DPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence            0000000000000000  0  00000000000 00000    000000000000  000223355677888888889999


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 038112          330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFI  409 (625)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  409 (625)
                      ++.+....+..  -+..-++....+|...|.+.......+...+.+.....+..-            -...+..+..+|.
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~kl------------Iak~~~r~g~a~~  309 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKL------------IAKALARLGNAYT  309 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHH------------HHHHHHHhhhhhh
Confidence            99998888875  355556667778888888888777666433222111111000            1112223455677


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHH
Q 038112          410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQSKKIDMAL  488 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~  488 (625)
                      +.++++.++..|.+.......|+.         ..+....+++........-  +.|.. .-...-...+.+.|++..|.
T Consensus       310 k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av  378 (539)
T KOG0548|consen  310 KREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAV  378 (539)
T ss_pred             hHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHH
Confidence            778899999999887765434332         2222333444444333332  22222 11222356677888888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112          489 KLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEER  568 (625)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  568 (625)
                      ..|.++++.. +.|...|....-+|.+.|.+..|+.-.+..++.+ ++....|..-+.++....++++|.+.|.+.++  
T Consensus       379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale--  454 (539)
T KOG0548|consen  379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--  454 (539)
T ss_pred             HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            8888888875 5578888888888888888888888888877752 44466677777777777888888888888888  


Q ss_pred             CCCCHHHHHHHHHHHhh
Q 038112          569 LRPDIISYNITLKGLCS  585 (625)
Q Consensus       569 ~~p~~~~~~~l~~~~~~  585 (625)
                      +.|+..-+...+.-|..
T Consensus       455 ~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             cCchhHHHHHHHHHHHH
Confidence            66766444444443443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.41  E-value=2.9e-09  Score=91.72  Aligned_cols=369  Identities=13%  Similarity=0.102  Sum_probs=267.0

Q ss_pred             CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---
Q 038112           33 GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---  109 (625)
Q Consensus        33 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---  109 (625)
                      +.|.+..-...++..++.+|.+..|+.-|..++..+| .+...++.-+..|...|+...|+.-+.++++.-|....+   
T Consensus        33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence            3466677788899999999999999999999999864 466777788889999999999999999998877766555   


Q ss_pred             ----hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC
Q 038112          110 ----LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD  185 (625)
Q Consensus       110 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  185 (625)
                          +.++|.+++|..-|+.+++.+  |+..+   ...+..+.       ...+++.         .....+..+...|+
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl-------~~~~e~~---------~l~~ql~s~~~~GD  170 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKL-------ALIQEHW---------VLVQQLKSASGSGD  170 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHH-------HhHHHHH---------HHHHHHHHHhcCCc
Confidence                889999999999999999876  32211   11111111       1111111         12334555677899


Q ss_pred             hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          186 YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYR  265 (625)
Q Consensus       186 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  265 (625)
                      ...|++....+++.  .+.+...+..-..+|...|++..|+.-++...+... .+..++..+...+...|+.+.++...+
T Consensus       171 ~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  171 CQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             hhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999987  467888888899999999999999988888776543 466777778888999999999999999


Q ss_pred             HHHHCCCCcCHHH----HH-------H--HHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHH
Q 038112          266 EMVESGIFVDAVT----YN-------A--MIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDE  328 (625)
Q Consensus       266 ~~~~~~~~~~~~~----~~-------~--l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~  328 (625)
                      +.++.+  ||...    |.       .  -+....+.++|.++++-.+...+..|.    ....+..+-.++...+++.+
T Consensus       248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e  325 (504)
T KOG0624|consen  248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE  325 (504)
T ss_pred             HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence            988763  44321    11       1  123456789999999999999888776    33455667778888899999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 038112          329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR--LADAASLVNRMDKHGCKLNAYTCNSLMN  406 (625)
Q Consensus       329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~  406 (625)
                      |++...+++...+. |..++..-..+|.-...++.|+.-++...+.++.+  ..+..+--.++....-..|   |..++ 
T Consensus       326 AiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRD---YYKIL-  400 (504)
T KOG0624|consen  326 AIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRD---YYKIL-  400 (504)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccch---HHHHh-
Confidence            99999999887432 57888888899999999999999999988776443  2233333333333222212   22222 


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 038112          407 GFIQASKLENAIFLFKEMSRKGCSPTVV  434 (625)
Q Consensus       407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~  434 (625)
                      +--+...-.+..+.|+++... ..||..
T Consensus       401 GVkRnAsKqEI~KAYRKlAqk-WHPDNF  427 (504)
T KOG0624|consen  401 GVKRNASKQEITKAYRKLAQK-WHPDNF  427 (504)
T ss_pred             hhcccccHHHHHHHHHHHHHh-cCCccc
Confidence            234445566677777777654 445543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=4.2e-10  Score=91.48  Aligned_cols=196  Identities=15%  Similarity=0.026  Sum_probs=131.8

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      |...|++..|..-++++++.+ |.+..+|..+...|.+.|+.+.|.+.|+++.+..+. +..+.+.....+|.+|++++|
T Consensus        45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHH
Confidence            444555555555555556555 445666777777777777777777777777776433 566677777777777777777


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      .+.|++......+..-..+|..++-+..+.|+++.|...|++.++..+ ..+.+...+.+.....|++..|...++....
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~  201 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARLYLERYQQ  201 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence            777777776655555556777777777777777777777777776554 2445566677777777777777777777766


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112          270 SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN  309 (625)
Q Consensus       270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  309 (625)
                      .+. ++..+.-..++.-...|+-+.+-++=..+.+..|.+
T Consensus       202 ~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         202 RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            654 566666666777777777776666666665554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.39  E-value=4.3e-10  Score=106.65  Aligned_cols=174  Identities=18%  Similarity=0.142  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCC-
Q 038112          277 VTYNAMIDGFCRAGKIKECFELWEVMGRK-------GCL-NVVSYNILIRGLLENGKVDEAISIWELLREK-----NCN-  342 (625)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-  342 (625)
                      .+...+...|...|+++.|+.+++...+.       ..+ -....+.+...|...+++++|..+|+++...     |.. 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34444666666666666666666665544       112 2333445778888888888888888887754     211 


Q ss_pred             C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112          343 A-DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF  421 (625)
Q Consensus       343 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  421 (625)
                      | -..++..|..+|.+.|++++|...++.           |..++........+--...++.+...+...+++++|..++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL  348 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            1 234566777889999999999999884           4444444222211112233455666677777888877777


Q ss_pred             HHHHhC---CCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112          422 KEMSRK---GCSPT----VVSYNTLINGLCKVERFGEAYSFVKEMLE  461 (625)
Q Consensus       422 ~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (625)
                      ....+.   -+.++    ..+++.+...|...|++++|.+++++++.
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            765431   01111    12455555556666666666666655543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=1.9e-10  Score=106.14  Aligned_cols=266  Identities=10%  Similarity=0.039  Sum_probs=168.6

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA   82 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   82 (625)
                      ..|-..+-.|.+.|++..|.-.|+.+++++  |...++|..|+.+...+++-..|+..++++++.. |.+..++..|+..
T Consensus       286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVS  362 (579)
T KOG1125|consen  286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVS  362 (579)
T ss_pred             CChHHHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence            345667788889999999999999999999  9999999999999999999999999999999997 4589999999999


Q ss_pred             HHccCCchHHHHHHHHhHHhhCCCcch-h-hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHH
Q 038112           83 YGKNSMPDKALDVFQRMNEIFGCEAGI-L-CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDE  160 (625)
Q Consensus        83 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  160 (625)
                      |...|.-.+|..++++.....+..... . ...++++.-          +-.++...+..             ..++|-+
T Consensus       363 ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~----------~s~~~~~~l~~-------------i~~~fLe  419 (579)
T KOG1125|consen  363 YTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT----------KSFLDSSHLAH-------------IQELFLE  419 (579)
T ss_pred             HhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC----------cCCCCHHHHHH-------------HHHHHHH
Confidence            999999999999999876543322221 0 011111100          00122222221             2222222


Q ss_pred             H-HhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          161 M-FERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       161 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      + ...+..+|+.++..|...|.-.|++++|+..|+.++...  |.|...||.|+..++...+.++|+..|.+.++..+. 
T Consensus       420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-  496 (579)
T KOG1125|consen  420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-  496 (579)
T ss_pred             HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-
Confidence            2 223333566666666666666666666666666666542  445556666666666666666666666666655332 


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVES---------GIFVDAVTYNAMIDGFCRAGKIKECFE  297 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~  297 (625)
                      -+.+...|.-+|...|.+++|.+.|-.++..         +..++..+|..|=.++.-.++.+.+.+
T Consensus       497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            2334444555666666666666655554321         112234455555455555555554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.38  E-value=6.7e-10  Score=101.36  Aligned_cols=151  Identities=13%  Similarity=-0.059  Sum_probs=72.7

Q ss_pred             CChhHHHHHHHhhccCCCC--CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112           16 KNPHTALALFDSATREPGY--AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL   93 (625)
Q Consensus        16 ~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   93 (625)
                      +..+.++..+..++.....  +..+..|..++..+...|+.++|...|+++++.+| .+...+..++..+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            3444555555554432210  11133455555555555555555555555555542 34555555555555555555555


Q ss_pred             HHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhh
Q 038112           94 DVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCY  173 (625)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  173 (625)
                      ..|+++.+                           .+ |.+..+|..+..++...|++++|.+.|+...+..+  +....
T Consensus       119 ~~~~~Al~---------------------------l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~  168 (296)
T PRK11189        119 EAFDSVLE---------------------------LD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR  168 (296)
T ss_pred             HHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH
Confidence            55555433                           22 22344555555555566666666666666655422  21111


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHH
Q 038112          174 NILIDGFFKKGDYMRAKEIWERLV  197 (625)
Q Consensus       174 ~~l~~~~~~~g~~~~a~~~~~~~~  197 (625)
                      ......+...++.++|.+.+....
T Consensus       169 ~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        169 ALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHH
Confidence            111122233455666666664443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.37  E-value=1.5e-09  Score=103.15  Aligned_cols=252  Identities=15%  Similarity=0.093  Sum_probs=168.2

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWELLREK-----N-CNADSTTH-GVLINGLCKNGYLNKAIQILNEVEEGGEGRLAD  381 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  381 (625)
                      -..+...+...|...|+++.|+.+++...+.     | ..|...+. ..+...|...+++.+|..+|++           
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~-----------  266 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE-----------  266 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH-----------
Confidence            4556667999999999999999999988765     2 12333333 3477889999999999999985           


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112          382 AASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE  461 (625)
Q Consensus       382 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (625)
                      |..+.+...-...+.-..+++.|...|.+.|++++|...++...+.                            +++...
T Consensus       267 AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~  318 (508)
T KOG1840|consen  267 ALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLG  318 (508)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhc
Confidence            3344444433333444556677777788888887777777665431                            111000


Q ss_pred             CCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 038112          462 KGWKPDM-ITYSLLINGLCQSKKIDMALKLCCQFLQK---GFTP----DVTMYNILIHGLCSAGKVEDALQLYSNMKKR-  532 (625)
Q Consensus       462 ~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  532 (625)
                      . ..|.. ..++.+...+...+++++|..+++...+.   -+.+    -..+++.|+..|...|++++|.+++++++.. 
T Consensus       319 ~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  319 A-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             c-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            0 01111 12344444555556666666665554431   0111    2467888999999999999999999888754 


Q ss_pred             ---CC--CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          533 ---NC--VP-NLVTYNTLMDGLFKTGDCDKALEIWNHILEE----R-LRPDI-ISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       533 ---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                         +.  .+ ....++.|+..|.+.+.+.+|.++|.+...-    | -.|+. .+|..|+..|.+.|++++|.++.+.+.
T Consensus       398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               11  11 2456788899999999999888888876541    1 12333 678899999999999999999998876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.36  E-value=5.7e-09  Score=99.64  Aligned_cols=197  Identities=10%  Similarity=-0.022  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC-C-HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchh--
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC-P-EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGIL--  110 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--  110 (625)
                      |..+.++..++..+...|+.+.+.+.+....+..++. + .......+..+...|++++|...++++...+|....++  
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4555566666665655666666666555555544321 1 11222233344555566666555555544444333211  


Q ss_pred             ----hh----cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112          111 ----CR----KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK  182 (625)
Q Consensus       111 ----~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  182 (625)
                          ..    .+....+...++... ...+........+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~  160 (355)
T cd05804          83 HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM  160 (355)
T ss_pred             hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence                01    122222222222211 1112223333344455556666666666666666653 2244555556666666


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCCc--chHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112          183 KGDYMRAKEIWERLVMETSVYPNV--VTYNVMINGLCKCGRFDECLEMWDRMK  233 (625)
Q Consensus       183 ~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~  233 (625)
                      .|++++|...+++........++.  ..|..+...+...|++++|..++++..
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            666666666666655442111121  123345556666666666666666654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.33  E-value=2.7e-07  Score=88.17  Aligned_cols=401  Identities=15%  Similarity=0.134  Sum_probs=220.3

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112          141 VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG  220 (625)
Q Consensus       141 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  220 (625)
                      .+.+......+..|+.+++.+.+..  ..+..|..++..|...|+++.|.++|.+.          ..++..|.+|.+.|
T Consensus       738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~  805 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccc
Confidence            3445566778888888888887763  24556788888999999999999888653          24566788899999


Q ss_pred             ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112          221 RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWE  300 (625)
Q Consensus       221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  300 (625)
                      +|+.|.++-++..  +++.....|..-..-.-..|.+.+|.++|-.+-    .|+     ..+.+|-+.|..+..+.+..
T Consensus       806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence            9999998877654  445555667666677778888888888775442    233     23567778888877777766


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112          301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA  380 (625)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  380 (625)
                      +.....  -..+...+..-+-..|+...|...|-+..         .|...++.|...+.|+.|-.+-+.   .+ +  .
T Consensus       875 k~h~d~--l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg-g--~  937 (1636)
T KOG3616|consen  875 KHHGDH--LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG-G--A  937 (1636)
T ss_pred             HhChhh--hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc-c--c
Confidence            543321  23445566677777888888877664332         244455666666666666655431   00 0  0


Q ss_pred             HHHHHHHHHhhCCCCcc--HH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038112          381 DAASLVNRMDKHGCKLN--AY------TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEA  452 (625)
Q Consensus       381 ~a~~~~~~~~~~~~~~~--~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  452 (625)
                      .+...+..+....+.-+  ..      ....-+...+..+.++-|..+-+-..+. -.|.  ....+...+...|++++|
T Consensus       938 n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~a~~ledegk~eda 1014 (1636)
T KOG3616|consen  938 NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKLAMFLEDEGKFEDA 1014 (1636)
T ss_pred             cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHHhhhhhhccchhhh
Confidence            11111111111111111  11      1122233444556666666655544432 1222  223344445677888888


Q ss_pred             HHHHHHHHHCCCCCCHhhHH-------------------HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          453 YSFVKEMLEKGWKPDMITYS-------------------LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL  513 (625)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~-------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  513 (625)
                      -+.+-+.++.+.  -..||.                   ..+..+.+..+|..|.++.+..-.   ..-+.++..-.+..
T Consensus      1015 skhyveaiklnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~---~~l~dv~tgqar~a 1089 (1636)
T KOG3616|consen 1015 SKHYVEAIKLNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE---DLLADVLTGQARGA 1089 (1636)
T ss_pred             hHhhHHHhhccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh---hhhHHHHhhhhhcc
Confidence            877777665421  111111                   112334444555555444332211   11133444445555


Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH----------------HHHcCCCCCHHHHH
Q 038112          514 CSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH----------------ILEERLRPDIISYN  577 (625)
Q Consensus       514 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~~~~~~~p~~~~~~  577 (625)
                      ...|++.+|..++-+..    +|+..     ++.|...+-+..|+++.+.                .+++|.+ ....|-
T Consensus      1090 iee~d~~kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gar-gvd~fv 1159 (1636)
T KOG3616|consen 1090 IEEGDFLKAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGAR-GVDGFV 1159 (1636)
T ss_pred             ccccchhhhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcccc-ccHHHH
Confidence            56677777766654433    23322     2233444555555444332                2222221 223344


Q ss_pred             HHHHHHhhcCChHHHHHHHHHH
Q 038112          578 ITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       578 ~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      .-.+-.-+.|+|.+|...+-+.
T Consensus      1160 aqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1160 AQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred             HHHHHHHhcccHHHHHHHHhhh
Confidence            4444555667777776665554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=1.7e-09  Score=98.77  Aligned_cols=220  Identities=16%  Similarity=0.020  Sum_probs=155.8

Q ss_pred             hcCChHHHHHHHHHHHHCC-CCC--CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhH
Q 038112          112 RKRQFEKAKRFLNSLWEKG-LKP--DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMR  188 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  188 (625)
                      ..+..+.++..+.+++... ..|  ....|......+.+.|+++.|...|++..+..+ .++..|..++..+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence            3456677777777777542 112  245577788888899999999999999998854 367889999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          189 AKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMV  268 (625)
Q Consensus       189 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  268 (625)
                      |.+.|++..+..  +.+..+|..++.++...|++++|++.|++..+..+  +..........+...++.++|...|.+..
T Consensus       117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        117 AYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            999999998863  44567788888899999999999999999887643  22222222223445678999999997765


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112          269 ESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-------KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC  341 (625)
Q Consensus       269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  341 (625)
                      ... .++...+ .  ......|+...+ +.+..+..       ..+....+|..++..+...|++++|+..|++....++
T Consensus       193 ~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        193 EKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             hhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            432 2222222 2  223334555443 23433332       2223567899999999999999999999999998753

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.31  E-value=1.9e-07  Score=89.13  Aligned_cols=438  Identities=15%  Similarity=0.119  Sum_probs=214.4

Q ss_pred             HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHccC-
Q 038112           13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK---CY-CPEDVALSVIQAYGKNS-   87 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~l~~~~~~~~-   87 (625)
                      ...|++++|..+++. .+-.  |.....|..+....+..|+.--|.++|..+-+..   .- ....+....-..+.-.| 
T Consensus       455 id~~df~ra~afles-~~~~--~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt  531 (1636)
T KOG3616|consen  455 IDDGDFDRATAFLES-LEMG--PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGT  531 (1636)
T ss_pred             cccCchHHHHHHHHh-hccC--ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCc
Confidence            356899999988886 4434  6667788888888888888888887776554321   00 00000000000010000 


Q ss_pred             CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHH----------HCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112           88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLW----------EKGLKPDVYSYGTVINGLVKSGDLLGALAV  157 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  157 (625)
                      ++=..+..+..+.+.+.....++..++..++|...|+.+.          ..|.|.-...-.+.++++...|+-+.|-++
T Consensus       532 ~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el  611 (1636)
T KOG3616|consen  532 DFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL  611 (1636)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh
Confidence            1112222222222222222222333333333333333221          112122222233334444444544444322


Q ss_pred             HHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112          158 FDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER  237 (625)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  237 (625)
                      -+    .    +-.+ ...+..|.+.|....|......-..   ...|......+..++.+..-+++|-.+|+++.    
T Consensus       612 k~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~----  675 (1636)
T KOG3616|consen  612 KE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIH----  675 (1636)
T ss_pred             cc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh----
Confidence            11    1    1111 2344556666665555443211100   22233344444444555555555555555543    


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 038112          238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTY-NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL  316 (625)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  316 (625)
                      .++     ..+.+|-+-.-+.+|+++-+-..    +...... ......+...|+++.|+..|-+..        ....-
T Consensus       676 d~d-----kale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~ka  738 (1636)
T KOG3616|consen  676 DFD-----KALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKA  738 (1636)
T ss_pred             CHH-----HHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHH
Confidence            111     12222222223444444433221    1111111 122334445566666666554432        22334


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCc
Q 038112          317 IRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL  396 (625)
Q Consensus       317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  396 (625)
                      +.+......+.+|+.+++.+..+..  .+.-|..+...|...|+++.|.++|.+                          
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e--------------------------  790 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTE--------------------------  790 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHh--------------------------
Confidence            5556667778888888877776632  334456667778888888888877762                          


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112          397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN  476 (625)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  476 (625)
                       ...++-.|.+|.+.|+|+.|.++-.+..  |+......|..-..-+-.+|++.+|.+++-...    .|+     ..+.
T Consensus       791 -~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiq  858 (1636)
T KOG3616|consen  791 -ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQ  858 (1636)
T ss_pred             -cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHH
Confidence             2345566777888888888877765543  334445556555556667777777776664432    233     2345


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNM  529 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  529 (625)
                      .|-+.|..+..+++..+...   ..-..+...+..-|...|+...|..-|-+.
T Consensus       859 mydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  859 MYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            56666666666666554322   112334445556666667776666655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.31  E-value=2e-08  Score=95.95  Aligned_cols=297  Identities=14%  Similarity=0.028  Sum_probs=192.4

Q ss_pred             CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 038112           71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGT  140 (625)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  140 (625)
                      .....+..++..+...|+++++...+....+..+.....          +...|++++|...+++++... |.+...+..
T Consensus         4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~   82 (355)
T cd05804           4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL   82 (355)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence            345677778888888899999888888877766644332          677899999999999999875 455545442


Q ss_pred             HHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Q 038112          141 VINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGL  216 (625)
Q Consensus       141 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  216 (625)
                       ...+..    .+....+.+.++.. ....+........+...+...|++++|.+.+++..+..  +.+...+..+..++
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~  158 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVL  158 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHH
Confidence             223333    34444555555441 11112223344456678899999999999999999874  55677888899999


Q ss_pred             HhcCChhhHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHhc
Q 038112          217 CKCGRFDECLEMWDRMKKNERE-KDS--FTYCSFIHGLCKAGNVEGAERVYREMVESGI-FVDAVTY-N--AMIDGFCRA  289 (625)
Q Consensus       217 ~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~  289 (625)
                      ...|++++|...+++.....+. ++.  ..|..+...+...|++++|..++++...... .+..... .  .++..+...
T Consensus       159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  238 (355)
T cd05804         159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA  238 (355)
T ss_pred             HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence            9999999999999998865432 222  2455788899999999999999999865432 1122111 1  233333444


Q ss_pred             CCHHHHHHH---HHHHHhcCC--CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHH
Q 038112          290 GKIKECFEL---WEVMGRKGC--LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA--------DSTTHGVLINGLC  356 (625)
Q Consensus       290 ~~~~~a~~~---~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~  356 (625)
                      |....+..+   ........+  ...........++...|+.+.|..+++.+......+        .........-++.
T Consensus       239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~  318 (355)
T cd05804         239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF  318 (355)
T ss_pred             CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence            543333332   122111111  122333357777888999999999998887643220        1111122233566


Q ss_pred             hcCCHHHHHHHHHHHH
Q 038112          357 KNGYLNKAIQILNEVE  372 (625)
Q Consensus       357 ~~~~~~~a~~~~~~~~  372 (625)
                      ..|+++.|...+....
T Consensus       319 ~~g~~~~A~~~L~~al  334 (355)
T cd05804         319 AEGNYATALELLGPVR  334 (355)
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            8899999999888543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1e-06  Score=85.43  Aligned_cols=413  Identities=14%  Similarity=0.103  Sum_probs=217.2

Q ss_pred             HHHHHHHHH--HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHH-----------hhC
Q 038112           38 PHLFHHILR--RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNE-----------IFG  104 (625)
Q Consensus        38 ~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~  104 (625)
                      +.+--.++.  .|...|+.+.|.+-.+-+.      +..+|..++.++.+..+.+-|.-.+..|..           ..+
T Consensus       726 ~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~  799 (1416)
T KOG3617|consen  726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG  799 (1416)
T ss_pred             HHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            444444443  4557899998887766554      357999999999999999999888776632           122


Q ss_pred             CCcch-----hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH
Q 038112          105 CEAGI-----LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG  179 (625)
Q Consensus       105 ~~~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  179 (625)
                      ....+     ....|..++|..+|++....+         .+=..|-..|.+++|.++-+.--+..+   ..||...+..
T Consensus       800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~  867 (1416)
T KOG3617|consen  800 EEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKY  867 (1416)
T ss_pred             cchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHH
Confidence            22222     345566666766666655432         222334456667776666553222211   2355556666


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 038112          180 FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG  259 (625)
Q Consensus       180 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  259 (625)
                      +...++.+.|++.|++.        +...++.. +.+  ..++.....+.+++      .|...|.--....-..|+.+.
T Consensus       868 Lear~Di~~AleyyEK~--------~~hafev~-rmL--~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda  930 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKA--------GVHAFEVF-RML--KEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA  930 (1416)
T ss_pred             HHhhccHHHHHHHHHhc--------CChHHHHH-HHH--HhChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence            66666777777666643        11111110 000  01111112222222      244455555555566777777


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      |+.+|+....         |..+++..+-+|+.++|-.+-++-.     |..+...+.+.|-..|++.+|...|.+... 
T Consensus       931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-  995 (1416)
T KOG3617|consen  931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRAQA-  995 (1416)
T ss_pred             HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Confidence            7777765442         4556666677777777777665533     566677778888888888888877765542 


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 038112          340 NCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIF  419 (625)
Q Consensus       340 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  419 (625)
                              +...++.|-..+.-++-.   .-....++.+...+.+.+++..   .     -+...+..|-+.|.+.+|++
T Consensus       996 --------fsnAIRlcKEnd~~d~L~---nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALe 1056 (1416)
T KOG3617|consen  996 --------FSNAIRLCKENDMKDRLA---NLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALE 1056 (1416)
T ss_pred             --------HHHHHHHHHhcCHHHHHH---HHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHH
Confidence                    222333332222211111   1111111222222222222211   0     11223344566666666655


Q ss_pred             HHHH--------HHh--CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112          420 LFKE--------MSR--KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK  489 (625)
Q Consensus       420 ~~~~--------~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  489 (625)
                      +--+        ++.  .....|+...+.....+....+++.|..++....+.         ...+. .|+..+..-..+
T Consensus      1057 lAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee 1126 (1416)
T KOG3617|consen 1057 LAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEE 1126 (1416)
T ss_pred             HHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHH
Confidence            4321        111  223446667777777778888888888777665542         12222 233333333333


Q ss_pred             HHHHHHh-CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 038112          490 LCCQFLQ-KGFTPD----VTMYNILIHGLCSAGKVEDALQLYSNM  529 (625)
Q Consensus       490 ~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  529 (625)
                      +-+.|.- ++-.|+    ......++.+|.++|.+..|-+-|.++
T Consensus      1127 ~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1127 FAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             HHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence            3333321 111222    235556667777777777776665544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=3.6e-06  Score=83.63  Aligned_cols=467  Identities=14%  Similarity=0.159  Sum_probs=259.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      .+|..--.+..++..-+..++..+...  ..++.++.+++..|...++-.+-      .++.++.-+    ...+.-|+.
T Consensus       842 deLv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCE  909 (1666)
T KOG0985|consen  842 DELVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCE  909 (1666)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhc
Confidence            334433345567777777777766655  78889999999988876654432      233332111    123333444


Q ss_pred             cCCchHHHHHHHHhHH----hhCCCcch--------hhhcCChH-----------HHHHHHHHHHHCCCC--CCHhHHHH
Q 038112           86 NSMPDKALDVFQRMNE----IFGCEAGI--------LCRKRQFE-----------KAKRFLNSLWEKGLK--PDVYSYGT  140 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~----~~~~~~~~--------~~~~~~~~-----------~A~~~~~~~~~~~~~--~~~~~~~~  140 (625)
                      ..++--|.-.|++-..    ..-++...        +.++.+++           --+++.++..+..++  .|+..-..
T Consensus       910 KRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~  989 (1666)
T KOG0985|consen  910 KRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSV  989 (1666)
T ss_pred             ccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHH
Confidence            4444333322222100    00000000        11111111           112233333333221  23334444


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh
Q 038112          141 VINGLVKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK  218 (625)
Q Consensus       141 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  218 (625)
                      .+.++...+-..+-+++++++.-...  ..+...-+.++-... .-+..+..+..+++-.-+  .|      .+......
T Consensus       990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD--a~------~ia~iai~ 1060 (1666)
T KOG0985|consen  990 TVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD--AP------DIAEIAIE 1060 (1666)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC--ch------hHHHHHhh
Confidence            45555555556666666665543211  111111122222222 223344444444432211  11      23344455


Q ss_pred             cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 038112          219 CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL  298 (625)
Q Consensus       219 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  298 (625)
                      .+-+++|..+|++..     .+......++.-   .+..+.|.+.-++..      .+.+|..+..+-.+.|...+|++-
T Consensus      1061 ~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             hhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence            556666666666542     344444444432   344555555444321      456777777777777887777776


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112          299 WEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGR  378 (625)
Q Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  378 (625)
                      |-+.     .++..|..++....+.|.+++-.+.+...++..-.|...  ..++-+|.+.++..+..+.+.         
T Consensus      1127 yika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------- 1190 (1666)
T KOG0985|consen 1127 YIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------- 1190 (1666)
T ss_pred             HHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---------
Confidence            6443     367777888888888888888887777766665444433  356667777777766655543         


Q ss_pred             hHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112          379 LADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKE  458 (625)
Q Consensus       379 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  458 (625)
                                      .|+......+.+-|...+.++.|.-+|.         ++..|..+...+...|+++.|.+.-++
T Consensus      1191 ----------------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1191 ----------------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred             ----------------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence                            4566777778888888888888887775         344577788888888888888766555


Q ss_pred             HHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112          459 MLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL  538 (625)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  538 (625)
                      +      .+..+|..+..+|...+.+.-|.     +-..++-....-...++..|...|-+++-+.+++..... -+...
T Consensus      1246 A------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHM 1313 (1666)
T KOG0985|consen 1246 A------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHM 1313 (1666)
T ss_pred             c------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHH
Confidence            3      35678888888888777766542     222333345566777888888889998888888877643 12334


Q ss_pred             HHHHHHHHHHHccCChhHHHHHH
Q 038112          539 VTYNTLMDGLFKTGDCDKALEIW  561 (625)
Q Consensus       539 ~~~~~l~~~~~~~g~~~~A~~~~  561 (625)
                      -.|+.|+-.|.+- ++++-.+.+
T Consensus      1314 gmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHH
Confidence            5667777666654 344444433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.24  E-value=4.8e-06  Score=90.47  Aligned_cols=376  Identities=9%  Similarity=-0.043  Sum_probs=231.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038112          175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA  254 (625)
Q Consensus       175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (625)
                      ..+..+...|++.+|...+.....   ...-..............|+++.+..+++.+.......++.........+...
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~  422 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ  422 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence            344456667777766654443211   00001111222334556778877777776653221122333334455566778


Q ss_pred             CCHHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-c----HHHHHHHHHHHH
Q 038112          255 GNVEGAERVYREMVESGI------FVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL-N----VVSYNILIRGLL  321 (625)
Q Consensus       255 ~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~l~~~~~  321 (625)
                      |+++++...+......-.      .+.  ......+...+...|++++|...++......+. +    ..+...+...+.
T Consensus       423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  502 (903)
T PRK04841        423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH  502 (903)
T ss_pred             CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            999999998887754311      111  122233445567889999999999987764322 2    234566777788


Q ss_pred             hCCCHHHHHHHHHHHHHcCCC---C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC--
Q 038112          322 ENGKVDEAISIWELLREKNCN---A--DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC--  394 (625)
Q Consensus       322 ~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--  394 (625)
                      ..|++++|...+++.......   +  .......+...+...|+++.|...+++...           +   ....+.  
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~-----------~---~~~~~~~~  568 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQ-----------L---IEEQHLEQ  568 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------H---HHHhcccc
Confidence            899999999999887753111   1  123445566778899999999999885432           1   112221  


Q ss_pred             -CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCC
Q 038112          395 -KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG--CSP--TVVSYNTLINGLCKVERFGEAYSFVKEMLEKG--WKPD  467 (625)
Q Consensus       395 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~  467 (625)
                       ......+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|++++|...+..+....  ....
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~  648 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH  648 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence             1123334556667778899999999998876531  111  12344456667788999999999998875421  1111


Q ss_pred             Hh--hH--HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC
Q 038112          468 MI--TY--SLLINGLCQSKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP  536 (625)
Q Consensus       468 ~~--~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~  536 (625)
                      ..  ..  ...+..+...|+.+.|...+...........   ...+..+..++...|++++|...++++...    |...
T Consensus       649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~  728 (903)
T PRK04841        649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS  728 (903)
T ss_pred             HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence            10  10  1122344567899999998877654211111   112346777888999999999999988753    2222


Q ss_pred             C-HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038112          537 N-LVTYNTLMDGLFKTGDCDKALEIWNHILEE  567 (625)
Q Consensus       537 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  567 (625)
                      + ..+...++.++...|+.++|...+.++++.
T Consensus       729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2 346677888899999999999999999984

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.19  E-value=4.9e-06  Score=81.86  Aligned_cols=483  Identities=14%  Similarity=0.086  Sum_probs=233.7

Q ss_pred             CCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC
Q 038112           50 DPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK  129 (625)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  129 (625)
                      ..+++..|....+.+++..|. .......=+-.+.+.|+.++|..+++..                           ...
T Consensus        21 d~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~---------------------------~~~   72 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEAL---------------------------YGL   72 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhh---------------------------ccC
Confidence            456666666666666666432 1111111112234555555555554443                           333


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchH
Q 038112          130 GLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTY  209 (625)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  209 (625)
                      + +.|..+...+-.+|.+.+..++|..+|+++...  -|+......+..+|.+.+.+.+-.+.--++-+.  .+.+...+
T Consensus        73 ~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyf  147 (932)
T KOG2053|consen   73 K-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYF  147 (932)
T ss_pred             C-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchH
Confidence            2 236666777777777777777777777777765  334555566666777766665544433333332  33444444


Q ss_pred             HHHHHHHHhcC-C---------hhhHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHH
Q 038112          210 NVMINGLCKCG-R---------FDECLEMWDRMKKNE-REKDSFTYCSFIHGLCKAGNVEGAERVY-REMVESGIFVDAV  277 (625)
Q Consensus       210 ~~l~~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~  277 (625)
                      -.++....+.- .         ..-|.+.++.+.+.+ ..-+..-...-.......|.+++|.+++ ....+.-...+..
T Consensus       148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~  227 (932)
T KOG2053|consen  148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLY  227 (932)
T ss_pred             HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchH
Confidence            44444444321 1         112444455554433 1111111222223344567788888777 3333332333444


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH----HHHHHHH---------HhCCCHHHHHHHHHHHHHcCCCCC
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY----NILIRGL---------LENGKVDEAISIWELLREKNCNAD  344 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~  344 (625)
                      .-+.-+..+...+++.+..++-.++...++++-..|    ..++...         ...+..+...+...+......   
T Consensus       228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---  304 (932)
T KOG2053|consen  228 LENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---  304 (932)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---
Confidence            445566677777788887777777777766651111    1111110         011112222222222221111   


Q ss_pred             hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112          345 STTHGVLING---LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLF  421 (625)
Q Consensus       345 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  421 (625)
                      ...+..-+.+   +...|+.+++...|-                    .+-|..|   .+..=+..|...=..++...++
T Consensus       305 Rgp~LA~lel~kr~~~~gd~ee~~~~y~--------------------~kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~  361 (932)
T KOG2053|consen  305 RGPYLARLELDKRYKLIGDSEEMLSYYF--------------------KKFGDKP---CCAIDLNHYLGHLNIDQLKSLM  361 (932)
T ss_pred             cCcHHHHHHHHHHhcccCChHHHHHHHH--------------------HHhCCCc---HhHhhHHHhhccCCHHHHHHHH
Confidence            1111111111   223344444433322                    1111111   1222223333333344444444


Q ss_pred             HHHHhCCCCCChh-------hHHHHHHHHhccC-----CHHHHHHHHHHHH---HCC------CCCCHh---------hH
Q 038112          422 KEMSRKGCSPTVV-------SYNTLINGLCKVE-----RFGEAYSFVKEML---EKG------WKPDMI---------TY  471 (625)
Q Consensus       422 ~~~~~~~~~~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~~~---~~~------~~~~~~---------~~  471 (625)
                      ......  .++..       -+...+..-...|     ..+.-..++.++.   +.|      +-|+..         +.
T Consensus       362 ~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav  439 (932)
T KOG2053|consen  362 SKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAV  439 (932)
T ss_pred             HHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHH
Confidence            444332  11111       0111111111122     2233344443332   222      222222         34


Q ss_pred             HHHHHHHhccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          472 SLLINGLCQSKKID---MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       472 ~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      +.++..|.+.++..   +|+-+++...... +.|..+-..+++.|+-.|-+..|.++|..+--.++..|...|. +..-+
T Consensus       440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~  517 (932)
T KOG2053|consen  440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA  517 (932)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence            56777888888765   4555555555542 4456666778899999999999999999887666666655443 34456


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112          549 FKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFL  596 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  596 (625)
                      ...|++..+...++..... +..+..--..++..-++.|.+++-.++.
T Consensus       518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~  564 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEML  564 (932)
T ss_pred             HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHH
Confidence            6788999999998888772 1112222223344444566666554443

>PF13041 PPR_2: PPR repeat family

Probab=99.18  E-value=9.1e-11  Score=73.88  Aligned_cols=50  Identities=28%  Similarity=0.729  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112          571 PDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN  620 (625)
Q Consensus       571 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  620 (625)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67788888888888888888888888888888888888888888888764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.18  E-value=5.1e-09  Score=96.98  Aligned_cols=224  Identities=9%  Similarity=0.033  Sum_probs=154.3

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      +.+.|+..+|.-.|+..++.+ |.+..+|..|......+++-..|+..+++..+..+. +......|+..|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence            777888888888888888776 667778888888888888888888888888877533 667777788888888888888


Q ss_pred             HHHHHHHHhCCCCCCCcchHHH----H-H--HHHHhcCChhhHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNV----M-I--NGLCKCGRFDECLEMWDRMK-KNEREKDSFTYCSFIHGLCKAGNVEGAE  261 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~  261 (625)
                      ...++..+...  +|-...-..    . .  ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|++++|+
T Consensus       373 l~~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  373 LKMLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            88877775532  110000000    0 0  01111122233344444443 3333467777777777777888888888


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112          262 RVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE  338 (625)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  338 (625)
                      +.|+.++...+. |...|+.|...++...+.++|+..|.++.+..|.-+.++..|...|...|.+++|.+.|-..+.
T Consensus       451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            888888776433 6677888888888888888888888888888777778888888888888888888877765543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.15  E-value=5.5e-06  Score=76.70  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112          398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSP-TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN  476 (625)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  476 (625)
                      .-+|...++...+..-+..|+.+|.+..+.+..+ ++..+++++.-++. ++..-|.++|+--.+. ...+..-....+.
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld  443 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLD  443 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence            3467778888888888899999999988876655 66677888876654 7788899999876654 2333444455666


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      .+...++-..+..+|++.+..+++|+  ..+|..++..-+.-|+...+.++-++....
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            77788888889999999888755554  568888888888889988888887777654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.13  E-value=6.7e-06  Score=76.14  Aligned_cols=151  Identities=13%  Similarity=0.115  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038112          449 FGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYS  527 (625)
Q Consensus       449 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  527 (625)
                      .+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            55556666666553222223467777888888888999999999999876665 6778888888665 688899999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI--ISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .-.+. ...++......+..+...|+-..|..+|++++..++.|+.  .+|..++.--..-|+...++++-+++..
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            88876 5556777778888889999999999999999998777754  7899999888888999999999888764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.11  E-value=7.3e-09  Score=92.88  Aligned_cols=244  Identities=16%  Similarity=0.118  Sum_probs=142.8

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      -.|+|..++.-.+ ....+.+.+......+.+++...|+++.++   .++... .+|.......+...+...++-+.++.
T Consensus        13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~   87 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALE   87 (290)
T ss_dssp             CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred             HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence            3566666665444 222221223334455666777777766443   333333 25555555555555554455566665


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG  271 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  271 (625)
                      -++..........+.........++...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.+
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~  161 (290)
T PF04733_consen   88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID  161 (290)
T ss_dssp             HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55554433211122222233335566678888888777542      355666677788888888888888888887653


Q ss_pred             CCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhh
Q 038112          272 IFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTT  347 (625)
Q Consensus       272 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  347 (625)
                         +..+...++.++..    .+.+.+|..+|+++....++++...+.++.++...|++++|.+++.+....+.. ++.+
T Consensus       162 ---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~  237 (290)
T PF04733_consen  162 ---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDT  237 (290)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHH
T ss_pred             ---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHH
Confidence               23444444444432    345888888888887776667788888888888888888888888887766543 6667


Q ss_pred             HHHHHHHHHhcCCH-HHHHHHHHH
Q 038112          348 HGVLINGLCKNGYL-NKAIQILNE  370 (625)
Q Consensus       348 ~~~l~~~~~~~~~~-~~a~~~~~~  370 (625)
                      +..++......|+. +.+.+.+.+
T Consensus       238 LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  238 LANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHH
Confidence            77777777777776 555566653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.11  E-value=3.3e-07  Score=99.40  Aligned_cols=363  Identities=12%  Similarity=0.014  Sum_probs=230.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      ..+..+...|++.+|+..+..+-..   +.-.......+..+...|++..+...+..+.......++......+..+...
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~  422 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ  422 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence            3455667788888888766553211   1112223334445667788887777766652211112334445566677788


Q ss_pred             CCchHHHHHHHHhHHhhCCC-----cc-----------hhhhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHH
Q 038112           87 SMPDKALDVFQRMNEIFGCE-----AG-----------ILCRKRQFEKAKRFLNSLWEKGLKPDV----YSYGTVINGLV  146 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~-----~~-----------~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~  146 (625)
                      |++++|..++..+.......     +.           ++...|++++|...+++.+......+.    ...+.+...+.
T Consensus       423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~  502 (903)
T PRK04841        423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH  502 (903)
T ss_pred             CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence            99999999998775432221     11           156789999999999998764212222    23455666777


Q ss_pred             hcCChhhHHHHHHHHHhCCCC-----CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC---CcchHHHHHHH
Q 038112          147 KSGDLLGALAVFDEMFERGVE-----TNVVCYNILIDGFFKKGDYMRAKEIWERLVMET---SVYP---NVVTYNVMING  215 (625)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~---~~~~~~~l~~~  215 (625)
                      ..|++++|...+++.......     ....++..+...+...|++++|...+++.....   +...   ....+..+...
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            899999999999888753111     112345566778889999999999888765531   1111   12234455667


Q ss_pred             HHhcCChhhHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHH--HH--HHHHHH
Q 038112          216 LCKCGRFDECLEMWDRMKKN----EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG--IFVDAV--TY--NAMIDG  285 (625)
Q Consensus       216 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~  285 (625)
                      +...|++++|...+++....    +.......+..+...+...|++++|...+.......  ......  ..  ...+..
T Consensus       583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  662 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY  662 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence            78889999999998887542    111123345556677889999999999998885431  111111  11  112244


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHH
Q 038112          286 FCRAGKIKECFELWEVMGRKGCLNV----VSYNILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTHGVLINGLC  356 (625)
Q Consensus       286 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~  356 (625)
                      +...|+.+.|..++...........    ..+..+..++...|++++|...++.....    +... ...+...+..++.
T Consensus       663 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~  742 (903)
T PRK04841        663 WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYW  742 (903)
T ss_pred             HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            5568899999999877654322222    12456778888999999999999887754    2221 1234556677889


Q ss_pred             hcCCHHHHHHHHHHHH
Q 038112          357 KNGYLNKAIQILNEVE  372 (625)
Q Consensus       357 ~~~~~~~a~~~~~~~~  372 (625)
                      ..|+.++|...+.+..
T Consensus       743 ~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        743 QQGRKSEAQRVLLEAL  758 (903)
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            9999999999998644

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.09  E-value=7.3e-09  Score=92.87  Aligned_cols=149  Identities=17%  Similarity=0.142  Sum_probs=65.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cC
Q 038112          407 GFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----SK  482 (625)
Q Consensus       407 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  482 (625)
                      .+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.  ..| .+...+..++..    .+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence            344445555555544321      13344444445555555555555555555442  112 222233332221    12


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-hHHHHHH
Q 038112          483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC-DKALEIW  561 (625)
Q Consensus       483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~  561 (625)
                      .+.+|..+|+++.+. .++++.+.+.++.+....|++++|.+++.+....+ +.++.++..++.+....|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            345555555554443 23445555555555555555555555555544432 23344444455554555544 3344444


Q ss_pred             HHHHH
Q 038112          562 NHILE  566 (625)
Q Consensus       562 ~~~~~  566 (625)
                      .++..
T Consensus       260 ~qL~~  264 (290)
T PF04733_consen  260 SQLKQ  264 (290)
T ss_dssp             HHCHH
T ss_pred             HHHHH
Confidence            44444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13041 PPR_2: PPR repeat family

Probab=99.07  E-value=4.6e-10  Score=70.64  Aligned_cols=49  Identities=59%  Similarity=1.057  Sum_probs=23.8

Q ss_pred             CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 038112          431 PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC  479 (625)
Q Consensus       431 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  479 (625)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.05  E-value=2.7e-05  Score=76.88  Aligned_cols=547  Identities=15%  Similarity=0.119  Sum_probs=275.8

Q ss_pred             HHHHHHH--HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112            6 KRLLNLL--KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus         6 ~~l~~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      +++.-++  ...+++..|++-....+++.  |..+.+...-+-.+.+.|+.++|..+++.....+ +.+..++..+-.+|
T Consensus        11 rr~rpi~d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y   87 (932)
T KOG2053|consen   11 RRLRPIYDLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVY   87 (932)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHH
Confidence            3444444  47789999999999999887  7777666666667889999999998888777664 44778888899999


Q ss_pred             HccCCchHHHHHHHHhHHhhCCCcch------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-Chh----
Q 038112           84 GKNSMPDKALDVFQRMNEIFGCEAGI------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLL----  152 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~----  152 (625)
                      -..+.+++|..+|+++.+.+|..-..      |.+.++|.+-.+.--++.+ +.|.++..+-.+++.....- ..+    
T Consensus        88 ~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen   88 RDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             HHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCccccc
Confidence            99999999999999998887773222      5666666554444444443 23445555555555444321 111    


Q ss_pred             -----hHHHHHHHHHhCCCCC-CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112          153 -----GALAVFDEMFERGVET-NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL  226 (625)
Q Consensus       153 -----~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  226 (625)
                           -|...++.+.+.+.+. +..-...-...+...|.+++|.+++..-....-...+...-+.-+..+...+++.+..
T Consensus       167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~  246 (932)
T KOG2053|consen  167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF  246 (932)
T ss_pred             chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence                 1333444444332111 1111222223334456666666665322111101112222233445555566666666


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112          227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG  306 (625)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  306 (625)
                      ++..++...+.  |.  |...+..            +++-+.....+| ..      ..+...+..+...+..++.....
T Consensus       247 ~l~~~Ll~k~~--Dd--y~~~~~s------------v~klLe~~~~~~-a~------~~~s~~~~l~~~~ek~~~~i~~~  303 (932)
T KOG2053|consen  247 ELSSRLLEKGN--DD--YKIYTDS------------VFKLLELLNKEP-AE------AAHSLSKSLDECIEKAQKNIGSK  303 (932)
T ss_pred             HHHHHHHHhCC--cc--hHHHHHH------------HHHHHHhccccc-ch------hhhhhhhhHHHHHHHHHHhhccc
Confidence            66555555432  11  2211111            111111110011 00      01112223333333333333221


Q ss_pred             CCcH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112          307 CLNV-VSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL  385 (625)
Q Consensus       307 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~  385 (625)
                      ...+ -++..+..-+..-|+.+++.-.|-+-...  .   ..+..=+..|...=..+.-..++........... .....
T Consensus       304 ~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~--k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s-~~~k~  377 (932)
T KOG2053|consen  304 SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD--K---PCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSS-GDEKV  377 (932)
T ss_pred             ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC--C---cHhHhhHHHhhccCCHHHHHHHHHHhhccCCcch-hhHHH
Confidence            1111 12222222233446666655443222111  1   1111112222222222222222222211111000 00000


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH---hC------CCCCChh---------hHHHHHHH
Q 038112          386 VNRMDKHGCKLNAYTCNSLMNGFIQAS-----KLENAIFLFKEMS---RK------GCSPTVV---------SYNTLING  442 (625)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~  442 (625)
                      +.+            +...+..-...|     ..+.-..++.+..   ++      +.-|+..         +-+.+++.
T Consensus       378 l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~  445 (932)
T KOG2053|consen  378 LQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDL  445 (932)
T ss_pred             HHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHH
Confidence            000            000111111111     1122222222211   11      2223332         23567788


Q ss_pred             HhccCCHH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 038112          443 LCKVERFG---EAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV  519 (625)
Q Consensus       443 ~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  519 (625)
                      +.+.++..   +|+-+++.-... -+.+..+-..+++.|.-.|-+..|.++++.+--+.+..|..-|. +...+...|++
T Consensus       446 ~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~  523 (932)
T KOG2053|consen  446 WRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRS  523 (932)
T ss_pred             HHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccc
Confidence            88888766   445555554443 24456666788999999999999999999887666666655443 34556788999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH---HHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHH
Q 038112          520 EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNH---ILEERLRPDIISYNITLKGLCSCSRMSDAFEFL  596 (625)
Q Consensus       520 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  596 (625)
                      ..+...++...+. ...+..---.++....+.|.+.+..++..-   +..+-..--..+-+..++..+..++.++-.+.+
T Consensus       524 ~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~  602 (932)
T KOG2053|consen  524 SFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLL  602 (932)
T ss_pred             hhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            9999999888764 222322223344444577888877665322   211111112234456666777788888888888


Q ss_pred             HHHH
Q 038112          597 NDAL  600 (625)
Q Consensus       597 ~~~~  600 (625)
                      ..|.
T Consensus       603 ~~~~  606 (932)
T KOG2053|consen  603 ESMK  606 (932)
T ss_pred             hccc
Confidence            8886

>PLN02789 farnesyltranstransferase

Probab=99.05  E-value=1.2e-07  Score=86.33  Aligned_cols=227  Identities=11%  Similarity=0.016  Sum_probs=119.3

Q ss_pred             HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112           10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      .++...++.++|+..+..+++.+  |.+..+|.....++...| ++++++..++.++..++ .+..+|.....++.+.|+
T Consensus        45 a~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~  121 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGP  121 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCc
Confidence            44445555556666665555555  555555555555555554 34555555555555543 244455544444433333


Q ss_pred             chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112           89 PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET  168 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  168 (625)
                      .                         ..++++.+++++++.+ +.+..+|+....++...|+++++++.++++++.++. 
T Consensus       122 ~-------------------------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-  174 (320)
T PLN02789        122 D-------------------------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-  174 (320)
T ss_pred             h-------------------------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-
Confidence            2                         0133444455555544 345556666666666666666666666666665443 


Q ss_pred             CchhhHHHHHHHHhc---CCh----hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc----CChhhHHHHHHHHHhCCC
Q 038112          169 NVVCYNILIDGFFKK---GDY----MRAKEIWERLVMETSVYPNVVTYNVMINGLCKC----GRFDECLEMWDRMKKNER  237 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~---g~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~  237 (625)
                      +..+|+....++.+.   |..    ++.++....++..  .+.|..+|+.+...+...    +...+|.+.+.+....++
T Consensus       175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~  252 (320)
T PLN02789        175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS  252 (320)
T ss_pred             chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence            444555544444333   212    3455555455544  245556666666655552    233456666666554332


Q ss_pred             CCChhhHHHHHHHHHhcC------------------CHHHHHHHHHHHHH
Q 038112          238 EKDSFTYCSFIHGLCKAG------------------NVEGAERVYREMVE  269 (625)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~------------------~~~~a~~~~~~~~~  269 (625)
                       .+......|+..|+...                  ..++|.+++..+.+
T Consensus       253 -~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~  301 (320)
T PLN02789        253 -NHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV  301 (320)
T ss_pred             -CcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence             34455555666555421                  34678888888843

>PLN02789 farnesyltranstransferase

Probab=99.02  E-value=3.1e-07  Score=83.65  Aligned_cols=221  Identities=12%  Similarity=0.044  Sum_probs=142.3

Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFER  164 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~  164 (625)
                      .+++.+|..+|+.+.          ...+..++|+.++++++..+ |.+..+|+.-...+...| ++++++..++++.+.
T Consensus        33 ~~~~~~a~~~~ra~l----------~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~  101 (320)
T PLN02789         33 TPEFREAMDYFRAVY----------ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED  101 (320)
T ss_pred             CHHHHHHHHHHHHHH----------HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH
Confidence            356666666666663          34566777777777777765 445556666666666666 567888888888776


Q ss_pred             CCCCCchhhHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh
Q 038112          165 GVETNVVCYNILIDGFFKKGDY--MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF  242 (625)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  242 (625)
                      +++ +..+|+....++.+.|+.  +++...++.+.+.+  +.+..+|+...-++...|+++++++.++++++.++ .+..
T Consensus       102 npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~s  177 (320)
T PLN02789        102 NPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNS  177 (320)
T ss_pred             CCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-Cchh
Confidence            443 555666555555555553  56677777777653  56677777777777777888888888888877664 3555


Q ss_pred             hHHHHHHHHHhc---CC----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCcHH
Q 038112          243 TYCSFIHGLCKA---GN----VEGAERVYREMVESGIFVDAVTYNAMIDGFCRA----GKIKECFELWEVMGRKGCLNVV  311 (625)
Q Consensus       243 ~~~~l~~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~  311 (625)
                      .|+.....+...   |.    .++.+....+++...+. +...|+.+..++...    +...+|.+.+.+.....+.+..
T Consensus       178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~  256 (320)
T PLN02789        178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF  256 (320)
T ss_pred             HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence            666555444433   22    23556666666665433 666676666666552    3345677777777666666777


Q ss_pred             HHHHHHHHHHh
Q 038112          312 SYNILIRGLLE  322 (625)
Q Consensus       312 ~~~~l~~~~~~  322 (625)
                      +...|+..|..
T Consensus       257 al~~l~d~~~~  267 (320)
T PLN02789        257 ALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHh
Confidence            77777777765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.99  E-value=6.6e-05  Score=76.87  Aligned_cols=241  Identities=9%  Similarity=0.044  Sum_probs=172.0

Q ss_pred             CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112           34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK  113 (625)
Q Consensus        34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  113 (625)
                      .|.+..++..|+..+...+++++|.++.+..++..| .....+..++..+...+++.++..+  .+....       ...
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-------~~~   96 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSF-------SQN   96 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhc-------ccc
Confidence            488899999999999999999999999998888864 4566677777788999998888877  443322       234


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      .++....-+...+...+  .+..++..+..+|-+.|+.++|..+++++.+.+ +-|+.+.+.++..|... ++++|++++
T Consensus        97 ~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720         97 LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            45655555555665543  566788889999999999999999999999987 44888999999999988 999999998


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-GI  272 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~  272 (625)
                      .+.+..                +...+++..+.+++.++....+. +...+..+.+                .+... +.
T Consensus       173 ~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~----------------ki~~~~~~  219 (906)
T PRK14720        173 KKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIER----------------KVLGHREF  219 (906)
T ss_pred             HHHHHH----------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHH----------------HHHhhhcc
Confidence            887543                66667788888888877755331 2222222222                22211 11


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      .--..++..+-..|-...+++++..+++.+....+.|..+...++.+|.
T Consensus       220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            1223444455556666677777777777777777777777777777665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.98  E-value=6.9e-08  Score=85.81  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=121.9

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---  109 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---  109 (625)
                      +..+..+..++..+...|++++|...++.+++..|...  ...+..++.++.+.|++++|...++++.+.+|..+.+   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            56677777888888888888888888888887764321  2466777888888888888888888887777766652   


Q ss_pred             -------hhh--------cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH
Q 038112          110 -------LCR--------KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN  174 (625)
Q Consensus       110 -------~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  174 (625)
                             +..        .|++++|...|+++.... |.+...+..+.....    ...      ...        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence                   222        267888888888888765 233333322221111    000      000        1123


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-CcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          175 ILIDGFFKKGDYMRAKEIWERLVMETSVYP-NVVTYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      .++..+...|++++|+..++.+....+..| ....+..++.++...|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566778888899999888888877642122 3457788888888899999998888887754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.97  E-value=4.5e-07  Score=86.79  Aligned_cols=216  Identities=13%  Similarity=0.069  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          347 THGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR  426 (625)
Q Consensus       347 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  426 (625)
                      .-..+...+...|-...|..+++                           ....|..++.+|...|+..+|..+..+..+
T Consensus       400 ~q~~laell~slGitksAl~I~E---------------------------rlemw~~vi~CY~~lg~~~kaeei~~q~le  452 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFE---------------------------RLEMWDPVILCYLLLGQHGKAEEINRQELE  452 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHH---------------------------hHHHHHHHHHHHHHhcccchHHHHHHHHhc
Confidence            34556778888999999999988                           445678889999999999999999988887


Q ss_pred             CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112          427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY  506 (625)
Q Consensus       427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  506 (625)
                      +  +|++..|..+++......-++.|.++.+.....       .-..+.......++++++.+.|+.-.+.+ +.-..+|
T Consensus       453 k--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w  522 (777)
T KOG1128|consen  453 K--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTW  522 (777)
T ss_pred             C--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence            4  788999999999888888888998888765432       11122222344789999999999888764 4467889


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112          507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC  586 (625)
Q Consensus       507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  586 (625)
                      ..+..+..+.++++.|.+.|...... -+.+...|+++..+|.+.|+..+|...++++++.+ .-+..+|........+.
T Consensus       523 f~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdv  600 (777)
T KOG1128|consen  523 FGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDV  600 (777)
T ss_pred             HhccHHHHHHhhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhc
Confidence            99999999999999999999999985 24458899999999999999999999999999965 33556677777777899


Q ss_pred             CChHHHHHHHHHHHH
Q 038112          587 SRMSDAFEFLNDALC  601 (625)
Q Consensus       587 g~~~~A~~~~~~~~~  601 (625)
                      |.+++|++.++++.+
T Consensus       601 ge~eda~~A~~rll~  615 (777)
T KOG1128|consen  601 GEFEDAIKAYHRLLD  615 (777)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            999999999999874

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.97  E-value=5.8e-07  Score=92.12  Aligned_cols=186  Identities=14%  Similarity=0.097  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL  478 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  478 (625)
                      ..|.++++.-...|.-+...++|+++.+..  .....|..|...|.+.+.+++|.++++.|.+. +......|...+..+
T Consensus      1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFL 1574 (1710)
T ss_pred             HHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHH
Confidence            356677777777778888889999988752  23457888899999999999999999999986 445678899999999


Q ss_pred             hccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112          479 CQSKKIDMALKLCCQFLQKGFT-PDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  557 (625)
                      .+..+-+.|..++.++++.-.. .........+..-.+.|+.+.+..+|+..... .|.-...|+.+++.-.++|+.+.+
T Consensus      1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred             hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHH
Confidence            9999999999999998885211 13455566677778999999999999999886 455688999999999999999999


Q ss_pred             HHHHHHHHHcCCCCC-HH-HHHHHHHHHhh-cCCh
Q 038112          558 LEIWNHILEERLRPD-II-SYNITLKGLCS-CSRM  589 (625)
Q Consensus       558 ~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~-~g~~  589 (625)
                      +.+|+++++.++.|- .. .|..++ .|-+ .|+-
T Consensus      1654 R~lfeRvi~l~l~~kkmKfffKkwL-eyEk~~Gde 1687 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWL-EYEKSHGDE 1687 (1710)
T ss_pred             HHHHHHHHhcCCChhHhHHHHHHHH-HHHHhcCch
Confidence            999999999888873 33 333333 3443 3553

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=1e-07  Score=84.77  Aligned_cols=58  Identities=10%  Similarity=0.108  Sum_probs=28.1

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNERE--KDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      +...+.+.|++++|+..+++.....+.  .....+..++.++...|++++|...++.+..
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334455555555555555555443221  1233444555555555555555555554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.94  E-value=2.6e-07  Score=88.43  Aligned_cols=222  Identities=13%  Similarity=0.061  Sum_probs=128.3

Q ss_pred             CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112          132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV  211 (625)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  211 (625)
                      +|--..-..+...+...|-...|..+|++..         .|..++.+|...|+..+|..+..+..+.   +|+...|..
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~  462 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCL  462 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHH
Confidence            3433344445555566666666666666432         3444566666666666666666655542   456666666


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK  291 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  291 (625)
                      +++......-+++|.++.+....       ..-..+.....+.++++++.+.|+.-.+.. +....+|..+..+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            66655555556666666554432       112222222334566666666666665543 2245666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112          292 IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEV  371 (625)
Q Consensus       292 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  371 (625)
                      ++.|.+.|.......|.+..+|+++..+|.+.++-.+|...+.+..+-+. -+...|...+....+.|.++.|.+.+.++
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666552 23444555555556666666666666665


Q ss_pred             Hhc
Q 038112          372 EEG  374 (625)
Q Consensus       372 ~~~  374 (625)
                      ...
T Consensus       614 l~~  616 (777)
T KOG1128|consen  614 LDL  616 (777)
T ss_pred             HHh
Confidence            544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.92  E-value=1.9e-08  Score=80.37  Aligned_cols=95  Identities=9%  Similarity=-0.100  Sum_probs=53.4

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      ++.++...|++++|+..|+.++..+  |.+..++..++.++.+.|++++|...|+.++..+| .+...+..++.++...|
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcC
Confidence            3455555556666666666555555  55555555555555555666666666666655542 35555555555555555


Q ss_pred             CchHHHHHHHHhHHhhCC
Q 038112           88 MPDKALDVFQRMNEIFGC  105 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~  105 (625)
                      ++++|+..|+.+....|.
T Consensus       107 ~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            555555555555444333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.89  E-value=1.4e-06  Score=89.44  Aligned_cols=220  Identities=11%  Similarity=0.051  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC---CchhhHHHHHHHHhcCChhHHHHHH
Q 038112          118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER-GVET---NVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      .|.. |++.+..+ |.....|...+......++.+.|+++++++... ++.-   -...|.++++.....|.-+...++|
T Consensus      1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            3444 44444433 566778999999999999999999999999876 2211   1236778888888889899999999


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF  273 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  273 (625)
                      +++.+..   .....|..|...|.+.+.+++|-++++.|.+.-- .....|...+..+.+..+-+.|..++.++++.-++
T Consensus      1521 eRAcqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            9998752   3345788999999999999999999999987543 46778999999999999999999999999886322


Q ss_pred             c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 038112          274 V-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA  343 (625)
Q Consensus       274 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  343 (625)
                      . ........+..-.+.|+.+.+..+|+......|.....|+.+++.-.+.|+.+.+..+|+++...++.|
T Consensus      1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            1 234455566677789999999999999999999999999999999999999999999999999997765

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=2.1e-06  Score=71.39  Aligned_cols=204  Identities=15%  Similarity=0.128  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHhhC---C-CCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 038112          362 NKAIQILNEVEEGGEGRLADAASLVNRMDKH---G-CKLNAY-TCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSY  436 (625)
Q Consensus       362 ~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  436 (625)
                      ++....++...+....+.++..++...+...   + ..++.. .+..++-+....|+.+.|...++++...- +.+...-
T Consensus        11 ~~l~~~~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~   89 (289)
T KOG3060|consen   11 EELRDQMRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVG   89 (289)
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHH
Confidence            3444444455555566666666666655432   2 333333 34455555666777777777777776642 2122222


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038112          437 NTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA  516 (625)
Q Consensus       437 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  516 (625)
                      ..-...+-..|.+++|+++++.+++.+ +.|..++..-+...-..|+.-+|++.+....+. +..|...|..+...|...
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH
Confidence            222222445677777888877777754 445556655555566667766777777777665 455777777777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCC
Q 038112          517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---DCDKALEIWNHILEERLRP  571 (625)
Q Consensus       517 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p  571 (625)
                      |++++|.-++++++-. -|.++..+..++..+.-.|   +..-|.++|.+.++  +.|
T Consensus       168 ~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~  222 (289)
T KOG3060|consen  168 GDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP  222 (289)
T ss_pred             hHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence            8888887777777764 2445666667776665544   45567777777777  555

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.88  E-value=1e-07  Score=79.80  Aligned_cols=159  Identities=13%  Similarity=0.054  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-----
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-----  109 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----  109 (625)
                      |.+..+ ..+...+...|+-+....+........ +.+..+....+...++.|++..|...|.++....|.+..+     
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            444555 555555555666666655555544432 3344455556666666666666666666665554444444     


Q ss_pred             --hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112          110 --LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM  187 (625)
Q Consensus       110 --~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  187 (625)
                        |-+.|+++.|..-|.+.++-. +.++...+.+.-.+.-.|+.+.|..++......+ +-|..+-..+.......|+++
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence              556666666666666666543 3456677777777888888888888888887763 336777777888888888888


Q ss_pred             HHHHHHHHHH
Q 038112          188 RAKEIWERLV  197 (625)
Q Consensus       188 ~a~~~~~~~~  197 (625)
                      +|..+...-.
T Consensus       220 ~A~~i~~~e~  229 (257)
T COG5010         220 EAEDIAVQEL  229 (257)
T ss_pred             HHHhhccccc
Confidence            8888766543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.87  E-value=8.1e-07  Score=75.25  Aligned_cols=117  Identities=14%  Similarity=0.176  Sum_probs=62.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HccCC--hhHH
Q 038112          481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL-FKTGD--CDKA  557 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A  557 (625)
                      .++.+++...++..++.+ +.+...|..++..|...|++++|...|++..+.. +.+...+..++.++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344445555555554442 3355555555555555666666666665555542 33455555555542 44444  3556


Q ss_pred             HHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          558 LEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       558 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .++++++++  ..| +...+..++..+.+.|++++|+..++++++
T Consensus       130 ~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            666666555  444 334555555555555666666666666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.86  E-value=1.9e-06  Score=87.62  Aligned_cols=238  Identities=11%  Similarity=0.074  Sum_probs=181.1

Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI  248 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (625)
                      +...+..|+..+...+++++|.++.+...+..  +.....|..++..+.+.++.+.+.-+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            55678889999989999999999999777753  34444555555677777775555444                 223


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE  328 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (625)
                      .......++.-...++..+...  .-+...+..++.+|-+.|+.+++..+|+++.+.+|.++.+.+.++..|... +.++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence            3333344444444444455543  224568888999999999999999999999999988999999999999999 9999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhC-CCCccHHHHHHHHHH
Q 038112          329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKH-GCKLNAYTCNSLMNG  407 (625)
Q Consensus       329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~  407 (625)
                      |.+++.+....               +...+++..+.+++.++....+.+.+....+.+.+... +...-..++..+-..
T Consensus       168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            99988877655               66677888999999999988888888888888887765 545566677778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038112          408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC  444 (625)
Q Consensus       408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  444 (625)
                      |...++++++..+++.+.+.... |......++.+|.
T Consensus       233 y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            99999999999999999987544 5556666776665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=5.5e-07  Score=76.26  Aligned_cols=151  Identities=11%  Similarity=0.166  Sum_probs=114.1

Q ss_pred             HHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112           79 VIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF  158 (625)
Q Consensus        79 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  158 (625)
                      -+..|...|+++......+.+..  +  ...+...++.+++...+++.+..+ |.+...|..+...+...|++++|...|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~--~--~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~   96 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLAD--P--LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAY   96 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhC--c--cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34568888888887665543311  1  112334677788888888888876 678888999999999999999999999


Q ss_pred             HHHHhCCCCCCchhhHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          159 DEMFERGVETNVVCYNILIDGF-FKKGD--YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      ++..+..+ .+...+..++.++ ...|+  .++|.+++++..+.+  +.+..++..+...+.+.|++++|+..++++.+.
T Consensus        97 ~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370         97 RQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99888754 3777788888764 56676  488999999888874  556677888888888899999999999888876


Q ss_pred             CC
Q 038112          236 ER  237 (625)
Q Consensus       236 ~~  237 (625)
                      .+
T Consensus       174 ~~  175 (198)
T PRK10370        174 NS  175 (198)
T ss_pred             CC
Confidence            54

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.81  E-value=1.1e-06  Score=73.68  Aligned_cols=158  Identities=14%  Similarity=0.096  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038112          174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK  253 (625)
Q Consensus       174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  253 (625)
                      ..+...+...|+-+....+.......  .+.+....+.++....+.|++..|...+++..... ++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence            44555555566666665555554332  23333444456666666666666666666665444 3566666666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112          254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                      .|+++.|..-|.+..+..+. ++...+.+...+.-.|+++.|..++.......+.+..+-..+..+....|++++|..+.
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            66666666666666665322 45556666666666666666666666666665556666666666666666666666554


Q ss_pred             HH
Q 038112          334 EL  335 (625)
Q Consensus       334 ~~  335 (625)
                      ..
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            43

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.5e-05  Score=66.55  Aligned_cols=187  Identities=14%  Similarity=0.155  Sum_probs=143.1

Q ss_pred             cCCHHHHHHHHHHHHh---CC-CCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHH
Q 038112          411 ASKLENAIFLFKEMSR---KG-CSPTVV-SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID  485 (625)
Q Consensus       411 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  485 (625)
                      ..+.++..+++.++..   .+ ..++.. .|..++-+....|+.+-|..+++.+... ++-+......-...+...|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            4567788888877764   23 334443 4556666777889999999999998876 4444444444445567789999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       486 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      +|.++++.+++.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.+++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999876 446667766666677788888999888888887 77899999999999999999999999999999


Q ss_pred             HcCCCC-CHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHC
Q 038112          566 EERLRP-DIISYNITLKGLCSCS---RMSDAFEFLNDALCR  602 (625)
Q Consensus       566 ~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~  602 (625)
                      -  +.| ++..+..+...++-.|   +.+-|.++|.+.++-
T Consensus       182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            8  777 6677777887766554   566788999998863

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.79  E-value=5.1e-07  Score=72.17  Aligned_cols=91  Identities=14%  Similarity=-0.024  Sum_probs=49.4

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhc
Q 038112          508 ILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSC  586 (625)
Q Consensus       508 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  586 (625)
                      .++..+...|++++|...|+.+.... +.+...+..++.++...|++++|+..|+++++  +.| +...+..+..++...
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHc
Confidence            34455555555555555555555542 33455555555555555555555555555555  344 335555555555555


Q ss_pred             CChHHHHHHHHHHHH
Q 038112          587 SRMSDAFEFLNDALC  601 (625)
Q Consensus       587 g~~~~A~~~~~~~~~  601 (625)
                      |++++|++.++..++
T Consensus       106 g~~~eAi~~~~~Al~  120 (144)
T PRK15359        106 GEPGLAREAFQTAIK  120 (144)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=3.1e-06  Score=71.00  Aligned_cols=235  Identities=17%  Similarity=0.124  Sum_probs=136.9

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                      .|+|..++..-+......  .++..-..+-++|...|.+...+.   ++.... .|.......+.......++.+.-..-
T Consensus        21 ~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~   94 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS   94 (299)
T ss_pred             hhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence            355555544444333221  334444445556666666544332   222221 22333344444444444554444433


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      ..+.........+......-+..|+..|++++|++......      +......-...+.+..+++-|.+.+++|.+.. 
T Consensus        95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id-  167 (299)
T KOG3081|consen   95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID-  167 (299)
T ss_pred             HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence            33332222122222223333456778888888888776632      33344444556667778888888888887752 


Q ss_pred             CcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhH
Q 038112          273 FVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTH  348 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  348 (625)
                        +..+...|..++.+    .+++..|.-+|+++...-++++...+..+.++...|++++|..+++..+..... ++.++
T Consensus       168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL  244 (299)
T KOG3081|consen  168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETL  244 (299)
T ss_pred             --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHH
Confidence              55666666666654    356788888888888877788888888888888888888888888888877544 66666


Q ss_pred             HHHHHHHHhcCCHHH
Q 038112          349 GVLINGLCKNGYLNK  363 (625)
Q Consensus       349 ~~l~~~~~~~~~~~~  363 (625)
                      ..++..-...|...+
T Consensus       245 ~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  245 ANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHHHHHHhCCChH
Confidence            666665555555433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=4.6e-06  Score=84.22  Aligned_cols=216  Identities=12%  Similarity=0.103  Sum_probs=142.3

Q ss_pred             CHHHHHHHHHHHHccCCchHH-HHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHhc
Q 038112           72 PEDVALSVIQAYGKNSMPDKA-LDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLW--EKGLKPDVYSYGTVINGLVKS  148 (625)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  148 (625)
                      ++.+...+=...+.-|..++| ++++.++.+.       ..+.+....+...+-+++  -+..+.++..+..|.....+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~   99 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQV-------LERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAA   99 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHHH-------HHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHc
Confidence            344444444555666666665 3344444332       112222222222222221  123456688888888888899


Q ss_pred             CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112          149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      |++++|..+++...+.. |-+...+..++..+.+.+++++|...+++.....  +.+......+..++.+.|++++|..+
T Consensus       100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~  176 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC  176 (694)
T ss_pred             CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence            99999999999988873 3356677788888889999999999998888763  55666777788888889999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      |+++...++ -+..++..+...+...|+.++|...|+...+.. .+....++.++      +++..-..+++.+...
T Consensus       177 y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~  245 (694)
T PRK15179        177 FERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVE  245 (694)
T ss_pred             HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence            999887433 357788888888888999999999998887752 23334443332      2333344555555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=2.4e-05  Score=65.87  Aligned_cols=150  Identities=15%  Similarity=0.123  Sum_probs=77.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----c
Q 038112          406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----S  481 (625)
Q Consensus       406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  481 (625)
                      ..|...+++++|.+......      +......=...+.+..+.+-|...+++|.+-   .+..|++.|..++.+    .
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence            34555556666655554411      2222222233344555566666666666542   234455555554432    2


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH-HHH
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA-LEI  560 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~  560 (625)
                      +.+..|.-+|+++.++ .+|+..+.+..+.++...|++++|..+++.+.... ..++.++..++.+-...|...++ .+.
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence            3455666666666554 35566666666666666666666666666666552 33455555555555555544332 334


Q ss_pred             HHHHHH
Q 038112          561 WNHILE  566 (625)
Q Consensus       561 ~~~~~~  566 (625)
                      +.++..
T Consensus       265 l~QLk~  270 (299)
T KOG3081|consen  265 LSQLKL  270 (299)
T ss_pred             HHHHHh
Confidence            444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.68  E-value=0.00026  Score=64.59  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             HHHHccCChhHHHHHHHhhccCCCCCCCHHHHH------HHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112           10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFH------HILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      =+|.+|+++.+|..+|.++.+..  ..++..+.      .+++++. ..+.+.....+....+..+. .+.+-...+-..
T Consensus        14 f~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~   89 (549)
T PF07079_consen   14 FILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK-SAYLPLFKALVA   89 (549)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence            35678899999999998877654  33333332      3445554 45677777777777766532 332222222334


Q ss_pred             HccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           84 GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .+.+.+..|.+.+......-......+...        -+.+.     -+|-..=+..+.++...|++.+++.++++++.
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~--------ni~~l-----~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~  156 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDT--------NIQQL-----FSDFFLDEIEAHSLIETGRFSEGRAILNRIIE  156 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhh--------hHHHH-----hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            578888888888775532111100000000        01111     12334445567778899999999999998876


Q ss_pred             CCC----CCCchhhHHHHHHHHh
Q 038112          164 RGV----ETNVVCYNILIDGFFK  182 (625)
Q Consensus       164 ~~~----~~~~~~~~~l~~~~~~  182 (625)
                      .=.    .-++.+|+.++-.+.+
T Consensus       157 ~llkrE~~w~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  157 RLLKRECEWNSDMYDRAVLMLSR  179 (549)
T ss_pred             HHhhhhhcccHHHHHHHHHHHhH
Confidence            533    3678888887666644

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.67  E-value=1.5e-05  Score=80.63  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=74.3

Q ss_pred             ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112          432 TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD-MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI  510 (625)
Q Consensus       432 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  510 (625)
                      +...+..|.....+.|.+++|..+++.+.+.  .|+ ......++..+.+.+++++|+..+++..... +.+......++
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a  161 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA  161 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence            4555555555566666666666666666553  333 3344455555566666666666666665543 22445555555


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .++...|++++|..+|+++... .+.+..++..++.++...|+.++|...|+++++
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5666666666666666666653 223355555666666666666666666666655

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.65  E-value=1.8e-06  Score=69.06  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  581 (625)
                      ......++..+...|++++|...++.+...+ +.+...+..++.++...|++++|..+++++++  ..| +...+..+..
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~   93 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAE   93 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence            3444555566666666666666666666542 33556666666666666666666666666665  334 3455555666


Q ss_pred             HHhhcCChHHHHHHHHHHHH
Q 038112          582 GLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       582 ~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +|...|++++|.+++++.++
T Consensus        94 ~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=8.5e-05  Score=68.52  Aligned_cols=147  Identities=14%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112          172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL  251 (625)
Q Consensus       172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (625)
                      .+.-....+...|++++|+..++.+...  .|.|...+......+.+.++.++|.+.++++....+. .......+..++
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~al  384 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQAL  384 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHH
Confidence            3333444455667777777777776665  3445555556667777777777777777777665332 244555666777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112          252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS  331 (625)
Q Consensus       252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  331 (625)
                      .+.|++.+|+.+++...... +.++..|..|.++|...|+..++..-.                 ...+...|++++|+.
T Consensus       385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~  446 (484)
T COG4783         385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII  446 (484)
T ss_pred             HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence            77777777777777766653 336677777777777777655554433                 334556677777776


Q ss_pred             HHHHHHHc
Q 038112          332 IWELLREK  339 (625)
Q Consensus       332 ~~~~~~~~  339 (625)
                      .+....+.
T Consensus       447 ~l~~A~~~  454 (484)
T COG4783         447 FLMRASQQ  454 (484)
T ss_pred             HHHHHHHh
Confidence            66666655

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.1e-05  Score=69.44  Aligned_cols=274  Identities=11%  Similarity=0.030  Sum_probs=168.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038112          284 DGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNK  363 (625)
Q Consensus       284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  363 (625)
                      ..+.+..++.+|+..+....+..|.+...|..-+..+...++++++.--.+.-.+.... .+.......+.+...++..+
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence            34556666777777777777777777777777777777777777776655554443211 22233334444555555555


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHhhCCC-CccHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038112          364 AIQILNEVEEGGEGRLADAASLVNRMDKHGC-KLNAYTCNSL-MNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLIN  441 (625)
Q Consensus       364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  441 (625)
                      |.+.++.-   .......+...++.+..... +|....+..+ ..++.-.++++.|.+.--.+.+.+.. +  .+...++
T Consensus       136 A~~~~~~~---~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vr  209 (486)
T KOG0550|consen  136 AEEKLKSK---QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVR  209 (486)
T ss_pred             HHHHhhhh---hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhc
Confidence            55555411   11122223333333333322 2333444433 24566778889888888777765321 2  2233332


Q ss_pred             --HHhccCCHHHHHHHHHHHHHCCCCCCHhhHH-------------HHHHHHhccCCHHHHHHHHHHHHhC---CCCCCH
Q 038112          442 --GLCKVERFGEAYSFVKEMLEKGWKPDMITYS-------------LLINGLCQSKKIDMALKLCCQFLQK---GFTPDV  503 (625)
Q Consensus       442 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~  503 (625)
                        ++.-.++.+.+...|++.+..  .|+.....             .-..-..+.|++..|.+++.+.+..   +..|+.
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na  287 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA  287 (486)
T ss_pred             ccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence              234567888888888888874  44443221             2223346788899999999988873   344566


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEER  568 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  568 (625)
                      ..|.....+..+.|+.++|+.--+...+.  .+. ...+..-+.++...+++++|.+-|+++.+..
T Consensus       288 klY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  288 KLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77777778888899999999888888774  332 3445556677788889999999999988843

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.59  E-value=2.7e-06  Score=67.98  Aligned_cols=117  Identities=18%  Similarity=0.171  Sum_probs=92.3

Q ss_pred             HHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 038112          455 FVKEMLEKGWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN  533 (625)
Q Consensus       455 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  533 (625)
                      .+++++..  .| +......+...+...|++++|...++.+...+ +.+...+..++.++...|++++|..++++..+.+
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34555543  33 34556677778888999999999999988764 4477888889999999999999999999988863


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038112          534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN  577 (625)
Q Consensus       534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  577 (625)
                       +.+...+..++.++...|++++|...|+++++  +.|+...+.
T Consensus        82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~  122 (135)
T TIGR02552        82 -PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS  122 (135)
T ss_pred             -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence             55688888899999999999999999999998  667655443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3.9e-05  Score=68.83  Aligned_cols=90  Identities=18%  Similarity=0.090  Sum_probs=66.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          251 LCKAGNVEGAERVYREMVESG---IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       251 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                      ..+.|++..|.+.|.+.+...   ..++...|.....+..+.|+.++|+.--......++....++..-..++...++|+
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e  338 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE  338 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888777652   34556667777777778888888888888877776666777777777777888888


Q ss_pred             HHHHHHHHHHHcC
Q 038112          328 EAISIWELLREKN  340 (625)
Q Consensus       328 ~a~~~~~~~~~~~  340 (625)
                      +|.+-+++..+..
T Consensus       339 ~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  339 EAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHhhc
Confidence            8888888777663

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.54  E-value=1e-06  Score=68.71  Aligned_cols=92  Identities=14%  Similarity=-0.039  Sum_probs=83.1

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++-.+..+|++++|.++|+.+...+  |.+..-|..|+-++-..|++++|+..|..+...++ .++..+..++.++...
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            35566778999999999999999988  99999999999999999999999999999999984 5888999999999999


Q ss_pred             CCchHHHHHHHHhHH
Q 038112           87 SMPDKALDVFQRMNE  101 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~  101 (625)
                      |+.+.|+..|+.+..
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998865

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.54  E-value=5.9e-05  Score=69.54  Aligned_cols=147  Identities=20%  Similarity=0.125  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK  357 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  357 (625)
                      ........+...|++++|+..++.+....|.|+..+......+.+.++..+|.+.++++....+. .......+..++.+
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~  386 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLK  386 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHh
Confidence            33344444555566666666666666666666666666666666666666666666666655222 13344445556666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 038112          358 NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN  437 (625)
Q Consensus       358 ~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  437 (625)
                      .|++.+|+.+++..                  .. ..+.++..|..|..+|...|+..++.....+              
T Consensus       387 ~g~~~eai~~L~~~------------------~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE--------------  433 (484)
T COG4783         387 GGKPQEAIRILNRY------------------LF-NDPEDPNGWDLLAQAYAELGNRAEALLARAE--------------  433 (484)
T ss_pred             cCChHHHHHHHHHH------------------hh-cCCCCchHHHHHHHHHHHhCchHHHHHHHHH--------------
Confidence            66666666665531                  11 1233555666666666666665555443332              


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          438 TLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       438 ~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                          .+...|+++.|...+....+.
T Consensus       434 ----~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         434 ----GYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             ----HHHhCCCHHHHHHHHHHHHHh
Confidence                233355666666655555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.52  E-value=1.2e-05  Score=70.50  Aligned_cols=59  Identities=8%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhC--CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112          140 TVINGLVKSGDLLGALAVFDEMFER--GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVM  198 (625)
Q Consensus       140 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  198 (625)
                      .+...|.+.|.+..|..-++.+++.  +.+........+..+|...|..++|.++...+..
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            3446688899999999999999986  3334456677888999999999999988776543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.50  E-value=0.00025  Score=63.35  Aligned_cols=280  Identities=11%  Similarity=0.034  Sum_probs=183.3

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHH
Q 038112           14 AEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKAL   93 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~   93 (625)
                      --||-..|.+.-.++.+.-..-+.+.+...-+++-.-.|+++.|.+-|+.|+.- |+.-.-.+..|.-.--+.|+.+.|+
T Consensus        96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence            458888888888876654412233333333445666789999999999999963 1111112222323335789999999


Q ss_pred             HHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC-CCCCHhH--HHHHHHHH---HhcCChhhHHHHHHH
Q 038112           94 DVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG-LKPDVYS--YGTVINGL---VKSGDLLGALAVFDE  160 (625)
Q Consensus        94 ~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~~~~  160 (625)
                      .+-+.....-|..+.+       .+..|+++.|+++++.-.... +.+++.-  -..|+.+-   .-..+...|...-.+
T Consensus       175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~  254 (531)
T COG3898         175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE  254 (531)
T ss_pred             HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            9999988888887777       788999999999999866542 2233322  11222211   123456677776666


Q ss_pred             HHhCCCCCCch-hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-CC-
Q 038112          161 MFERGVETNVV-CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-ER-  237 (625)
Q Consensus       161 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-  237 (625)
                      ..+.  .||.. .-....+.+.+.|+..++-.+++.+-+..   |....+..  ..+.+.|+  .++.-+++..+. .. 
T Consensus       255 a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e---PHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~slk  325 (531)
T COG3898         255 ANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE---PHPDIALL--YVRARSGD--TALDRLKRAKKLESLK  325 (531)
T ss_pred             Hhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC---CChHHHHH--HHHhcCCC--cHHHHHHHHHHHHhcC
Confidence            6655  44433 23345678899999999999999988754   44433332  23444554  344444333221 11 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 038112          238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-GKIKECFELWEVMGRK  305 (625)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~  305 (625)
                      +.+..+...+.++....|++..|..--+.....  .|....|..|...-... |+-.++..++.+..+.
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            346667778888999999999988877777654  67788888888776554 9999999999888765

>PF12854 PPR_1: PPR repeat

Probab=98.45  E-value=3.2e-07  Score=51.43  Aligned_cols=32  Identities=31%  Similarity=0.840  Sum_probs=22.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          568 RLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       568 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      |+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56667777777777777777777777776665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.40  E-value=5.3e-06  Score=64.62  Aligned_cols=102  Identities=9%  Similarity=0.012  Sum_probs=80.5

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQA   82 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~   82 (625)
                      -.++..+..+|++++|+..|+.++... +.+..+.++..++.++.+.|++++|.+.|+.++...|..  ...++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            356778888999999999999887654 223335677888999999999999999999999876432  25678888888


Q ss_pred             HHccCCchHHHHHHHHhHHhhCCCc
Q 038112           83 YGKNSMPDKALDVFQRMNEIFGCEA  107 (625)
Q Consensus        83 ~~~~~~~~~A~~~~~~~~~~~~~~~  107 (625)
                      +.+.|++++|...++++...+|..+
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHHCcCCh
Confidence            9999999999999998877666544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.37  E-value=3.2e-05  Score=62.28  Aligned_cols=116  Identities=13%  Similarity=0.039  Sum_probs=64.4

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChh
Q 038112          481 SKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCD  555 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~  555 (625)
                      .++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+......|+  ......|+.++...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            556666666666666542 112   22333445566666777777777776666531121  223445666666677777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          556 KALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       556 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      +|+..++....  -...+..+...+++|.+.|++++|+..|++.
T Consensus       103 ~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77766655322  1123344555566666777777777666653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.36  E-value=1.9e-05  Score=73.51  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG  552 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  552 (625)
                      .++..+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++++..+. .+.+...+...+..+...+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            33444445555666666666665542  33  2233555555555666666666666554 2334555555556666666


Q ss_pred             ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          553 DCDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       553 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      +++.|+.+.+++.+  ..|+ ..+|..|+.+|.+.|++++|+-.++.+.
T Consensus       249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            66666666666666  4553 3566666666666666666666666553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.35  E-value=1.8e-05  Score=73.74  Aligned_cols=123  Identities=12%  Similarity=0.131  Sum_probs=101.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038112          210 NVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA  289 (625)
Q Consensus       210 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (625)
                      ..++..+...++++.|+.+|+++.+..    +.....+++.+...++..+|.+++++.++..+ .+...+......+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence            345566777889999999999998653    33555678888888888999999999887643 3677777778888899


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          290 GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       290 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      ++++.|+++.+++....|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999988899999999999999999999998887654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.35  E-value=4.7e-06  Score=78.10  Aligned_cols=100  Identities=9%  Similarity=-0.066  Sum_probs=89.7

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .-++-+...|++++|+..|+.+++..  |.++.++..++.++...|++++|+..++.++..++ .+...+..++.+|...
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence            45677889999999999999999988  89999999999999999999999999999999974 5788999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      |++++|+..|+++....|..+.+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRF  106 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999997766665554

>PF12854 PPR_1: PPR repeat

Probab=98.35  E-value=8.1e-07  Score=49.80  Aligned_cols=30  Identities=47%  Similarity=0.987  Sum_probs=12.7

Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 038112          499 FTPDVTMYNILIHGLCSAGKVEDALQLYSN  528 (625)
Q Consensus       499 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  528 (625)
                      +.||..+|+.|+.+|++.|++++|.++|++
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            334444444444444444444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.34  E-value=3.6e-05  Score=61.95  Aligned_cols=125  Identities=15%  Similarity=0.144  Sum_probs=82.7

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 038112          436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPD---MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILI  510 (625)
Q Consensus       436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~  510 (625)
                      |..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+......|+  ......+.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            33333333 3677777777777777652 222   22334455667778888888888888887642222  22445567


Q ss_pred             HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112          511 HGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI  564 (625)
Q Consensus       511 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  564 (625)
                      .++...|++++|+..++.....  ...+..+...+.++.+.|++++|+..|+++
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7788888888888888664432  334556777888888888888888888765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.31  E-value=2.4e-05  Score=61.26  Aligned_cols=94  Identities=9%  Similarity=0.041  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGL  583 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  583 (625)
                      ....+...+...|++++|.++|+-+...+ +-+..-|..|+.++...|++++|+..|..+..  +.| |+..+..+..++
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHH
Confidence            33344444555666666666666665532 22455555666666666666666666666665  444 445566666666


Q ss_pred             hhcCChHHHHHHHHHHHH
Q 038112          584 CSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       584 ~~~g~~~~A~~~~~~~~~  601 (625)
                      ...|+.+.|.+-|+..+.
T Consensus       114 L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        114 LACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            666666666666665553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.27  E-value=7.4e-07  Score=63.78  Aligned_cols=83  Identities=7%  Similarity=0.052  Sum_probs=65.6

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112           15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD   94 (625)
Q Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   94 (625)
                      +|+++.|+.+|+.+....+..++...+..++.++.+.|++++|..+++. .+.++ .+......++.++.+.|++++|+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            7899999999999988772212566677789999999999999999998 55543 345666677999999999999999


Q ss_pred             HHHHh
Q 038112           95 VFQRM   99 (625)
Q Consensus        95 ~~~~~   99 (625)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99863

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=1.5e-05  Score=68.59  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=82.9

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Q 038112          475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGD  553 (625)
Q Consensus       475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  553 (625)
                      ..-..+.+++.+|+..|.++++.. +-|+..|..-..+|.+.|.++.|++-.+..+..  .|+ ..+|..|+.+|...|+
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence            345678889999999999998864 446777888888999999999999988888884  444 7788999999999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112          554 CDKALEIWNHILEERLRPDIISYNITLK  581 (625)
Q Consensus       554 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~  581 (625)
                      +++|++.|+++++  +.|+..+|..=+.
T Consensus       165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  165 YEEAIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence            9999999999998  8888776654443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.24  E-value=0.0038  Score=57.23  Aligned_cols=144  Identities=12%  Similarity=0.184  Sum_probs=109.3

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          470 TYSLLINGLCQSKKIDMALKLCCQFLQKG-FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      .|...+.+..+....+.|..+|-++.+.+ +.+++.+++.++..+ ..|++..|..+|+.-... ++.+....+..+..+
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL  476 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL  476 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence            34556666667778899999999999987 567888889998866 468899999999988876 455555556777788


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112          549 FKTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV  618 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  618 (625)
                      ...++-+.|..+|+..+++ +..+  ..+|..++.--..-|+...+..+=++|.+  .-|...+.....+-|
T Consensus       477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry  545 (660)
T COG5107         477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY  545 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence            8999999999999987764 3333  46888888887888999999888888875  335554444444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.23  E-value=0.0041  Score=57.17  Aligned_cols=455  Identities=15%  Similarity=0.179  Sum_probs=227.3

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCC------HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHH--HH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPD------VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG--FF  181 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~  181 (625)
                      +.+++++.+|.++|.++.+.. ..+      ...-+.+++++.. ++.+.....+....+.  .| ...|..+..+  +.
T Consensus        16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y   90 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY   90 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence            334555556666555555432 111      2233455566553 3445444444444444  12 2334444433  45


Q ss_pred             hcCChhHHHHHHHHHHhC--CCCCC-----------CcchHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCChhhH
Q 038112          182 KKGDYMRAKEIWERLVME--TSVYP-----------NVVTYNVMINGLCKCGRFDECLEMWDRMKKN----EREKDSFTY  244 (625)
Q Consensus       182 ~~g~~~~a~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~  244 (625)
                      +.+.+.+|.+.+......  +..+|           +...=+..+.++...|.+.++..+++++...    ...-+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            788899998887766554  10111           1111234567778888999888888877653    233677777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          245 CSFIHGLCKAGNVEGAERVYREMVES---GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       245 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      +.++-.+.+        ..|-++.+.   .+-|  . |..++..|.+.=..-++.. +++    -.|.......++....
T Consensus       171 d~~vlmlsr--------SYfLEl~e~~s~dl~p--d-yYemilfY~kki~~~d~~~-Y~k----~~peeeL~s~imqhlf  234 (549)
T PF07079_consen  171 DRAVLMLSR--------SYFLELKESMSSDLYP--D-YYEMILFYLKKIHAFDQRP-YEK----FIPEEELFSTIMQHLF  234 (549)
T ss_pred             HHHHHHHhH--------HHHHHHHHhcccccCh--H-HHHHHHHHHHHHHHHhhch-HHh----hCcHHHHHHHHHHHHH
Confidence            775554433        233333322   2222  2 2333333333211000000 000    0011111111111111


Q ss_pred             hC--CCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccH
Q 038112          322 EN--GKVDEAISIWELLREKNCNADSTTH-GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNA  398 (625)
Q Consensus       322 ~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  398 (625)
                      -.  .+..--.++++.-...-+.|+.... ..+......  +.+.+..+.+.+....          .+.+.+    .-.
T Consensus       235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~----------i~~Lke----~li  298 (549)
T PF07079_consen  235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSK----------IEKLKE----ELI  298 (549)
T ss_pred             hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHh----------HHHHHH----HHH
Confidence            10  0111112222222222233433322 222333322  4444444444322110          001111    123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHhc----cCCHHHHHHHHHHHHHCCCCCC
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYN-------TLINGLCK----VERFGEAYSFVKEMLEKGWKPD  467 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~  467 (625)
                      .++..++....+.++...|.+.+.-+....  |+...-.       .+-+..+.    .-+...-+.++......++  |
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--D  374 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--D  374 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--c
Confidence            467778888888899999988888777653  3322111       11122221    1123334455555554332  3


Q ss_pred             Hhh----HHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHc---CCCHHHHHHHHHHHHhCCCC
Q 038112          468 MIT----YSLLINGLCQSKK-IDMALKLCCQFLQKGFTPDVTMYNILI----HGLCS---AGKVEDALQLYSNMKKRNCV  535 (625)
Q Consensus       468 ~~~----~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~  535 (625)
                      ..-    +.....-+.+.|. -++|+.+++.+++-. +-|...-+.+.    ..|..   ...+..-+.+-+-+.+.|++
T Consensus       375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            221    1222333455555 788999999988742 23443333322    23322   22344444444445556776


Q ss_pred             C----CHHHHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          536 P----NLVTYNTLMDG--LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       536 ~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      |    +...-|.|..+  +..+|++.++.-+-.-+.+  +.|++.+|.-++-++....++++|..++.++     +|+..
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~  526 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER  526 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence            6    34456666655  5578999999887777777  8999999999999999999999999999885     46666


Q ss_pred             HHHH
Q 038112          610 TWHI  613 (625)
Q Consensus       610 ~~~~  613 (625)
                      .+++
T Consensus       527 ~~ds  530 (549)
T PF07079_consen  527 MRDS  530 (549)
T ss_pred             hHHH
Confidence            6653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.23  E-value=0.0021  Score=62.14  Aligned_cols=211  Identities=14%  Similarity=0.091  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHH--HHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 038112           71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKA--KRFLNSLWEKGLKPDVYSYGTVINGLVKS  148 (625)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  148 (625)
                      |.+..|..++......-.++.|...|-+.              |+|...  .+-+..+.+..      .-.+=+.+  --
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc--------------~dY~Gik~vkrl~~i~s~~------~q~aei~~--~~  747 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRC--------------GDYAGIKLVKRLRTIHSKE------QQRAEISA--FY  747 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhh--------------ccccchhHHHHhhhhhhHH------HHhHhHhh--hh
Confidence            56788888887766666677776666544              333211  11111111111      00111111  23


Q ss_pred             CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112          149 GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       149 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      |++++|.++|-+|-+++         ..+..+.+.|++-+..++++.--.......-..+|+.+...+.....|++|.+.
T Consensus       748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777666665442         234455566666666655543211110111123566677777777777777766


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL  308 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  308 (625)
                      +..-.      +   ....+.++.+..++++...+.+.+     +.+....-.+..++.+.|.-++|.+.+-+...   +
T Consensus       819 Y~~~~------~---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p  881 (1189)
T KOG2041|consen  819 YSYCG------D---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P  881 (1189)
T ss_pred             HHhcc------c---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---c
Confidence            65432      1   112345555555555544444333     22444555566666666666666655533221   1


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWE  334 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~  334 (625)
                           ..-+..|...+++.+|.++-+
T Consensus       882 -----kaAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  882 -----KAAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHH
Confidence                 122344555556666665543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.21  E-value=4.8e-06  Score=56.14  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=46.7

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC   69 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   69 (625)
                      ++..+..+|++++|+..|+.+++..  |.++.++..++.++...|++++|...|+.+++..|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            5677778888888888888877777  77888888888888888888888888888877753

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.21  E-value=9.4e-06  Score=60.44  Aligned_cols=95  Identities=14%  Similarity=0.041  Sum_probs=82.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      ...++.++..+|++++|+..|+.+++..  |.++..+..++.++...+++++|.+.++.+++..+ .+...+..++.++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence            3467888899999999999999998876  77778889999999999999999999999999864 35578888999999


Q ss_pred             ccCCchHHHHHHHHhHHh
Q 038112           85 KNSMPDKALDVFQRMNEI  102 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~  102 (625)
                      ..|+++.|...+......
T Consensus        80 ~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          80 KLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHhHHHHHHHHHHHHcc
Confidence            999999999999887543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.19  E-value=0.00018  Score=65.49  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             ChhhHHHHHHHHHhC----CCC-CCchhhHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHhc
Q 038112          150 DLLGALAVFDEMFER----GVE-TNVVCYNILIDGFFKK-GDYMRAKEIWERLVMETSVYPN----VVTYNVMINGLCKC  219 (625)
Q Consensus       150 ~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~  219 (625)
                      ++++|+..++++.+.    |-+ .-...+..++..|... |+++.|++.|++..+.......    ..++..++..+.+.
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l  168 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL  168 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence            566666665555432    100 0112344455556565 6777777766665442100001    12344555566666


Q ss_pred             CChhhHHHHHHHHHhCCCCCC-----hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          220 GRFDECLEMWDRMKKNEREKD-----SF-TYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       220 g~~~~a~~~~~~~~~~~~~~~-----~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      |++++|.++|+++.......+     .. .+...+-++...||+..|...+++....
T Consensus       169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            666666666666554322111     11 1222333444556666666666655543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=5.1e-05  Score=65.44  Aligned_cols=131  Identities=20%  Similarity=0.137  Sum_probs=97.0

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 038112          440 INGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV  519 (625)
Q Consensus       440 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  519 (625)
                      ..-+.+.+++++|+..|.++++. .+.|.+-|..-..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence            34456788999999999999986 24466778888899999999999999999998853 22467999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCChh---HHHHHHHHHHHcCCCCCHH
Q 038112          520 EDALQLYSNMKKRNCVPNLVTY-NTLMDGLFKTGDCD---KALEIWNHILEERLRPDII  574 (625)
Q Consensus       520 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~  574 (625)
                      ++|++.|++.+.  +.|+-.+| ..|-.+-.+.+...   .+..-++.....|..|+..
T Consensus       166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~  222 (304)
T KOG0553|consen  166 EEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR  222 (304)
T ss_pred             HHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence            999999999998  56664444 45555555555444   4444454444455555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.17  E-value=5.1e-05  Score=65.02  Aligned_cols=173  Identities=15%  Similarity=0.084  Sum_probs=113.4

Q ss_pred             HHHHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Q 038112            8 LLNLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE--DVALSVIQAYG   84 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~   84 (625)
                      .+..+..+|++.+|+..|+.+... ++.+..+.+...++.++.+.|++..|...+++.++..|..+.  .++..++.++.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            356677899999999999998854 455677788888999999999999999999999998765333  24444444433


Q ss_pred             cc-----------CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhh
Q 038112           85 KN-----------SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLG  153 (625)
Q Consensus        85 ~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  153 (625)
                      ..           +...+|...|+.+...+|..+-+       .+|...+..+...-    ...-..+...|.+.|.+..
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~-------~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a  159 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA-------EEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA  159 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence            22           23457788888888888876654       33433333332210    1112335677889999999


Q ss_pred             HHHHHHHHHhCC--CCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          154 ALAVFDEMFERG--VETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       154 a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      |..-++.+++.=  .+........++.++.+.|..+.+..
T Consensus       160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            999999998871  11122456778888999998885543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.16  E-value=9.2e-05  Score=57.55  Aligned_cols=95  Identities=16%  Similarity=0.097  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC----HHHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN---LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD----IISYN  577 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~  577 (625)
                      ++..++..+...|++++|.+.|..+.... +.+   ...+..++.++...|++++|...|+.+..  ..|+    ...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~   80 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHHH
Confidence            44455566666677777777776666542 111   34455566667777777777777776665  2332    34455


Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHC
Q 038112          578 ITLKGLCSCSRMSDAFEFLNDALCR  602 (625)
Q Consensus       578 ~l~~~~~~~g~~~~A~~~~~~~~~~  602 (625)
                      .+..++.+.|++++|.+.++++++.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            6666666677777777777776653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.15  E-value=5.5e-05  Score=63.08  Aligned_cols=87  Identities=7%  Similarity=-0.117  Sum_probs=39.9

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCC-CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAH-SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      ++..+...|++++|+..|+.+++....++ ....+..++.++.+.|++++|...+.+++...+ .+...+..++.++...
T Consensus        41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHc
Confidence            34444445555555555555443321111 134444455555555555555555555555432 2344444444455444


Q ss_pred             CCchHHHHH
Q 038112           87 SMPDKALDV   95 (625)
Q Consensus        87 ~~~~~A~~~   95 (625)
                      |+...+..-
T Consensus       120 g~~~~a~~~  128 (172)
T PRK02603        120 GEKAEEAGD  128 (172)
T ss_pred             CChHhHhhC
Confidence            444444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.14  E-value=0.00041  Score=55.15  Aligned_cols=156  Identities=13%  Similarity=0.001  Sum_probs=95.7

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      ...+.+.-|++.+++-.......   .++...-..++.++.+.|++.+|...|++.+..-+-.+..+...++++.+..++
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~  139 (251)
T COG4700          63 LMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence            34444444555444333332221   455666677889999999999999999999987677788889999999999999


Q ss_pred             chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112           89 PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET  168 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  168 (625)
                      +..|...++++-+-.|...                        .||  ....+.+.+...|.+..|...|+...+.  -|
T Consensus       140 ~A~a~~tLe~l~e~~pa~r------------------------~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--yp  191 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFR------------------------SPD--GHLLFARTLAAQGKYADAESAFEVAISY--YP  191 (251)
T ss_pred             HHHHHHHHHHHhhcCCccC------------------------CCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CC
Confidence            9999999888754322111                        122  2233444555555555555555555554  23


Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHH
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWER  195 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~  195 (625)
                      +...-......+.++|+.+++..-+..
T Consensus       192 g~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         192 GPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            333333344445555555554443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.13  E-value=8.7e-05  Score=69.71  Aligned_cols=104  Identities=11%  Similarity=0.054  Sum_probs=81.5

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG  552 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  552 (625)
                      .....+...|+++.|+..|+++++.. +.+...|..++.+|...|++++|+..+++++... +.+...|..++.+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            34556677889999999999888864 4467788888888888999999999999888863 446778888888899999


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112          553 DCDKALEIWNHILEERLRPDIISYNITL  580 (625)
Q Consensus       553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~  580 (625)
                      ++++|+..|+++++  +.|+......++
T Consensus        85 ~~~eA~~~~~~al~--l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGAS--LAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            99999999999888  677654444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.12  E-value=0.00098  Score=60.69  Aligned_cols=124  Identities=12%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-----CCH-H
Q 038112          473 LLINGLCQS-KKIDMALKLCCQFLQK----GFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV-----PNL-V  539 (625)
Q Consensus       473 ~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~-~  539 (625)
                      .+...|... |++++|.+.|++..+.    + .+.  ...+..++..+.+.|++++|.++|+++......     .+. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            344556666 7888888888877652    2 111  345667788888999999999999988765222     122 2


Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----C--HHHHHHHHHHHhhc--CChHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP----D--IISYNITLKGLCSC--SRMSDAFEFLNDA  599 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~  599 (625)
                      .+...+-++...||+..|.+.+++...  ..|    +  ......++.+|-..  ..+++++.-|+.+
T Consensus       198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  198 YFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            334455677888999999999999887  333    2  24556666666542  4466666666665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.12  E-value=0.0011  Score=52.84  Aligned_cols=128  Identities=16%  Similarity=0.082  Sum_probs=66.1

Q ss_pred             CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 038112          465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNT  543 (625)
Q Consensus       465 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~  543 (625)
                      .|+...-..+..+....|+..+|...|++...--+..|......+.++....+++..|...++.+.+.+. ..++.....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3444444455555555566666666665555433344555555555555555666666666555554310 001233334


Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHH
Q 038112          544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFE  594 (625)
Q Consensus       544 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  594 (625)
                      +++.+...|.++.|...|+.+++  .-|+...-......+.++|+..++..
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence            55555566666666666666555  44555444444444555555554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=0.0002  Score=62.35  Aligned_cols=120  Identities=20%  Similarity=0.198  Sum_probs=88.2

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHc
Q 038112          491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG---DCDKALEIWNHILEE  567 (625)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~  567 (625)
                      ++.-+..+ +.|...|..|+..|...|+++.|...|.+..+. .++|+..+..++.++....   +..++..++++++. 
T Consensus       145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-  221 (287)
T COG4235         145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-  221 (287)
T ss_pred             HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-
Confidence            33334443 557888888888888888888888888888886 3567778777777765533   45678888888888 


Q ss_pred             CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038112          568 RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVR  616 (625)
Q Consensus       568 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  616 (625)
                       .+| |......+...+...|++.+|...++.|++.  -|....+..++.
T Consensus       222 -~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie  268 (287)
T COG4235         222 -LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE  268 (287)
T ss_pred             -cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence             667 5567777778888888999999888888863  355555555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.10  E-value=9.3e-06  Score=54.71  Aligned_cols=63  Identities=14%  Similarity=-0.016  Sum_probs=55.4

Q ss_pred             HHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112           43 HILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE  106 (625)
Q Consensus        43 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  106 (625)
                      .++..+.+.|++++|++.|+.+++.. |.+...+..++.++...|++++|..+|+++.+..|.+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            46778889999999999999999997 4588999999999999999999999999998877764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=0.007  Score=58.74  Aligned_cols=177  Identities=13%  Similarity=0.057  Sum_probs=108.9

Q ss_pred             CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH----------HHHHhcCChhhHHHHHHHHHhCC
Q 038112          167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI----------NGLCKCGRFDECLEMWDRMKKNE  236 (625)
Q Consensus       167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~a~~~~~~~~~~~  236 (625)
                      .|.+..|..+++.....-.++.|...|-+...-.    .......|-          ..-.--|++++|.+++-.+..+.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence            5678888888888877777888887776654332    221111111          12223478888888887665332


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 038112          237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNI  315 (625)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  315 (625)
                               ..+..+.+.|++-...++++.--.. .-..-...++.+...+.....+++|.+.|.....        ...
T Consensus       765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~  827 (1189)
T KOG2041|consen  765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TEN  827 (1189)
T ss_pred             ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHh
Confidence                     2356667778887777666532110 0011245677888888888888888888876442        234


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          316 LIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       316 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                      .+.++.+..++++-..+.+.+     +-+...+-.+..++...|.-++|.+.+-
T Consensus       828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH
Confidence            556666666666655444333     2255566677788888888888777654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.06  E-value=0.0037  Score=55.04  Aligned_cols=67  Identities=15%  Similarity=0.049  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112          276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSY---NILIRGLLENGKVDEAISIWELLREKNCN  342 (625)
Q Consensus       276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  342 (625)
                      +..+......+...|++++|.+.|+.+....|.+..+.   ..++.++.+.+++++|...+++..+..+.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            33344444555556666666666666666655543332   45566666667777777777666665433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.06  E-value=1.3e-05  Score=57.37  Aligned_cols=79  Identities=28%  Similarity=0.320  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112          255 GNVEGAERVYREMVESGIF-VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       255 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                      |+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|.++++. .+.++.+......++.++.+.|++++|++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            4455555555555544321 1233334445555555555555555544 2222233344444455555555555555555


Q ss_pred             H
Q 038112          334 E  334 (625)
Q Consensus       334 ~  334 (625)
                      +
T Consensus        82 ~   82 (84)
T PF12895_consen   82 E   82 (84)
T ss_dssp             H
T ss_pred             h
Confidence            4

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.06  E-value=0.0093  Score=54.61  Aligned_cols=279  Identities=16%  Similarity=0.116  Sum_probs=131.3

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH-HHHHHHH
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED-VALSVIQ   81 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~   81 (625)
                      +|...+++.-...|++..|..+.+.       .+.+   ..-+-.+...|+++.|   +..+++.+   +++ ++..++.
T Consensus         1 IS~a~IA~~A~~~GR~~LA~~LL~~-------Ep~~---~~qVplLL~m~e~e~A---L~kAi~Sg---D~DLi~~vLl~   64 (319)
T PF04840_consen    1 ISYAEIARKAYEEGRPKLATKLLEL-------EPRA---SKQVPLLLKMGEDELA---LNKAIESG---DTDLIYLVLLH   64 (319)
T ss_pred             CCHHHHHHHHHHcChHHHHHHHHHc-------CCCh---HHHHHHHhcCCchHHH---HHHHHHcC---CccHHHHHHHH
Confidence            5788999999999999999998875       1112   2224455677887777   66777776   344 5555555


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF  158 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  158 (625)
                      .--+..     ..-|.++....|.....   +++..+.+.-..+|.+--..    .......+-.++ +..+.+.-...+
T Consensus        65 L~~~l~-----~s~f~~il~~~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~-~~~~~~~~~~~L  134 (319)
T PF04840_consen   65 LKRKLS-----LSQFFKILNQNPVASNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEAL-SQKDVEEKISFL  134 (319)
T ss_pred             HHHhCC-----HHHHHHHHHhCcchHHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHH-hCCChHHHHHHH
Confidence            443222     12233444444432222   45545555544444331110    011111111111 112333322222


Q ss_pred             HHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112          159 DEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER  237 (625)
Q Consensus       159 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  237 (625)
                      ..+.+. +-..+......++.-..+      -.++-..+....+......+.+..+.-+...|+...|.++-.+..    
T Consensus       135 ~~a~~~y~~~k~~~f~~~~~e~q~~------Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----  204 (319)
T PF04840_consen  135 KQAQKLYSKSKNDAFEAKLIEEQIK------LLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK----  204 (319)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHH------HHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC----
Confidence            222221 000010111111111110      011111111111011112234444555666666666666655554    


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112          238 EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI  317 (625)
Q Consensus       238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  317 (625)
                      -|+...|...+.+++..++|++-.++...      +-++..|...+..|.+.|...+|..++..+.         +..-+
T Consensus       205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~---------~~~rv  269 (319)
T PF04840_consen  205 VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP---------DEERV  269 (319)
T ss_pred             CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC---------hHHHH
Confidence            45666666666777777776665554321      1133445556666666666666666665521         13445


Q ss_pred             HHHHhCCCHHHHHHH
Q 038112          318 RGLLENGKVDEAISI  332 (625)
Q Consensus       318 ~~~~~~~~~~~a~~~  332 (625)
                      ..|.+.|++.+|.+.
T Consensus       270 ~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  270 EMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHCCCHHHHHHH
Confidence            556666666666544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.0001  Score=64.06  Aligned_cols=118  Identities=9%  Similarity=0.047  Sum_probs=67.3

Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHh
Q 038112           20 TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRM   99 (625)
Q Consensus        20 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   99 (625)
                      ..+.-++.-+.++  |.+...|..|+.+|...|++..|...|.++.+.. +.+++.+..++..+..+.+           
T Consensus       140 ~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~-----------  205 (287)
T COG4235         140 ALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG-----------  205 (287)
T ss_pred             HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC-----------
Confidence            3334444444444  5555555555555555555555555555555543 2344455444444322211           


Q ss_pred             HHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112          100 NEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                                   ...-.++..+|++++..+ +.|+.+...+...+...|++.+|...++.|.+..
T Consensus       206 -------------~~~ta~a~~ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         206 -------------QQMTAKARALLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             -------------CcccHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence                         112345666666666665 5667777777777888888888888888888774

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=98.04  E-value=0.01  Score=54.52  Aligned_cols=433  Identities=10%  Similarity=0.059  Sum_probs=229.1

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---h----hhcCChHHHHHHHHHHHHCCCC
Q 038112           60 ILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---L----CRKRQFEKAKRFLNSLWEKGLK  132 (625)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~----~~~~~~~~A~~~~~~~~~~~~~  132 (625)
                      .+++-++.+ |.+...|..|++-+..+|.+++-+++++++...+|..+.+   +    ...++|...+.+|.+++...  
T Consensus        30 rLRerIkdN-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--  106 (660)
T COG5107          30 RLRERIKDN-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--  106 (660)
T ss_pred             HHHHHhhcC-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--
Confidence            455556665 4588899999999999999999999999998888877777   2    23478889999999998875  


Q ss_pred             CCHhHHHHHHHHHHhcCCh------hhHHHHHHHHHh-CCCCCC-chhhHHHHHHH---------HhcCChhHHHHHHHH
Q 038112          133 PDVYSYGTVINGLVKSGDL------LGALAVFDEMFE-RGVETN-VVCYNILIDGF---------FKKGDYMRAKEIWER  195 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~  195 (625)
                      .+...|...+.--.+.+..      ....+.|+-... .++.|- ...|...+..+         .++.+.+..+..|.+
T Consensus       107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r  186 (660)
T COG5107         107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR  186 (660)
T ss_pred             ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence            4466677666644443311      122344444443 234443 23344433322         123345556666666


Q ss_pred             HHhCCCCCCCcchHHHH------HHHHHh---cC----ChhhHHHHHHHHHh--CCCC----CChhhHHHHHHHHHhcCC
Q 038112          196 LVMETSVYPNVVTYNVM------INGLCK---CG----RFDECLEMWDRMKK--NERE----KDSFTYCSFIHGLCKAGN  256 (625)
Q Consensus       196 ~~~~~~~~~~~~~~~~l------~~~~~~---~g----~~~~a~~~~~~~~~--~~~~----~~~~~~~~l~~~~~~~~~  256 (625)
                      ++..+ ...-...|+..      +.-...   -|    -+-.|...++++..  .|..    .+..+++...+       
T Consensus       187 al~tP-~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-------  258 (660)
T COG5107         187 ALQTP-MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-------  258 (660)
T ss_pred             HHcCc-cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-------
Confidence            66532 11101112111      000000   00    11222333333221  1110    01111111000       


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----CC-H-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 038112          257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-----GK-I-KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEA  329 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  329 (625)
                                       ....-|...+.--...     |+ . ...--+++.....-+..+..|.....-+...++-+.|
T Consensus       259 -----------------~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a  321 (660)
T COG5107         259 -----------------TSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA  321 (660)
T ss_pred             -----------------cccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence                             0000011111111110     00 0 1111123333333333555666666666666666666


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCchHHHHHHHHHHhhCCC
Q 038112          330 ISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG---------------GEGRLADAASLVNRMDKHGC  394 (625)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~~  394 (625)
                      +...+.....    .+.....+...|.-..+.+.....|++....               ..++.+-..+++-.-.    
T Consensus       322 l~tv~rg~~~----spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----  393 (660)
T COG5107         322 LKTVERGIEM----SPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI----  393 (660)
T ss_pred             HHHHHhcccC----CCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH----
Confidence            6655433322    1111112222222223333222222221110               0111111111111111    


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhH-H
Q 038112          395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG-CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY-S  472 (625)
Q Consensus       395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~  472 (625)
                      ..-..+|...++...+..-.+.|+.+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--...  .||...| .
T Consensus       394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~  470 (660)
T COG5107         394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKE  470 (660)
T ss_pred             hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHH
Confidence            1234567778888888889999999999999887 6678888999998665 47888999999876654  3444433 4


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      ..+..+...++-+.|..+|+..+.. +..+  ..+|..++..-..-|+...+..+-+++...
T Consensus       471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            5566677889999999999976653 2223  568888888888889998888887777764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.03  E-value=9.6e-05  Score=54.81  Aligned_cols=91  Identities=24%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhh
Q 038112          507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCS  585 (625)
Q Consensus       507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  585 (625)
                      ..++..+...|++++|...++++.+. .+.+...+..++.++...|++++|.+.++....  ..| +..++..++..+..
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHH
Confidence            34455555566666666666666554 123345555566666666666666666666655  233 23455555556666


Q ss_pred             cCChHHHHHHHHHHH
Q 038112          586 CSRMSDAFEFLNDAL  600 (625)
Q Consensus       586 ~g~~~~A~~~~~~~~  600 (625)
                      .|++++|...++...
T Consensus        81 ~~~~~~a~~~~~~~~   95 (100)
T cd00189          81 LGKYEEALEAYEKAL   95 (100)
T ss_pred             HHhHHHHHHHHHHHH
Confidence            666666666666655

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.99  E-value=1.1e-05  Score=54.96  Aligned_cols=55  Identities=15%  Similarity=0.164  Sum_probs=40.0

Q ss_pred             HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112           12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus        12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      +..+|++++|+..|+.++...  |.++.+...++.++.+.|++++|.++++.+....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            345677777777777777666  7777777777777777777777777777777765

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.98  E-value=3.3e-05  Score=52.81  Aligned_cols=66  Identities=9%  Similarity=-0.011  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-CchHHHHHHHHhHHhh
Q 038112           37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS-MPDKALDVFQRMNEIF  103 (625)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~  103 (625)
                      ++..|..++..+...|++++|+..|+++++.++ .+..++..++.++...| ++++|+..++++.+..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            456677777777777777777777777777753 36667777777777777 5777777777765543

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.97  E-value=8.1e-05  Score=65.78  Aligned_cols=92  Identities=10%  Similarity=0.015  Sum_probs=42.1

Q ss_pred             ccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCch
Q 038112           14 AEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPD   90 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~   90 (625)
                      .+|++++|+..|+..++.. ..+..+.++..++.++...|++++|...|+.+++..|.  ..++.+..++.++...|+++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            3455555555555544433 11111344455555555555555555555555544321  12334444444454555555


Q ss_pred             HHHHHHHHhHHhhCC
Q 038112           91 KALDVFQRMNEIFGC  105 (625)
Q Consensus        91 ~A~~~~~~~~~~~~~  105 (625)
                      .|...|+.+.+.+|.
T Consensus       235 ~A~~~~~~vi~~yP~  249 (263)
T PRK10803        235 KAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHHHCcC
Confidence            555555555444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.97  E-value=0.0022  Score=54.77  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=43.5

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCCc---hhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112          141 VINGLVKSGDLLGALAVFDEMFERGVETNV---VCYNILIDGFFKKGDYMRAKEIWERLVM  198 (625)
Q Consensus       141 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~  198 (625)
                      +.+.|.+.|.+..|..-++.|++. .+...   ..+..+..+|...|-.++|...-.-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            456788999999999999999988 33333   3566677889999999999887655443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.97  E-value=0.00031  Score=58.32  Aligned_cols=93  Identities=15%  Similarity=0.045  Sum_probs=54.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFV--DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      ..+..++..+...|++++|+..|+..+.....+  ...++..+..++...|++++|+..++......+.....+..+..+
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i  115 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            344555556666666666666666665542221  123566666666667777777777766666655555556666555


Q ss_pred             HH-------hCCCHHHHHHHHH
Q 038112          320 LL-------ENGKVDEAISIWE  334 (625)
Q Consensus       320 ~~-------~~~~~~~a~~~~~  334 (625)
                      +.       ..|+++.|...++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHH
Confidence            55       5666664444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.94  E-value=0.0002  Score=54.24  Aligned_cols=92  Identities=13%  Similarity=0.042  Sum_probs=52.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCC--CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYA--HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQA   82 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~   82 (625)
                      +++.++-..|+.++|+.+|+.++.. |..  .-..++..++.++...|++++|..+++......|.  .+..+...++-+
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            3455666667777777777766653 211  12345556666666677777777777766665321  123333444455


Q ss_pred             HHccCCchHHHHHHHHh
Q 038112           83 YGKNSMPDKALDVFQRM   99 (625)
Q Consensus        83 ~~~~~~~~~A~~~~~~~   99 (625)
                      +...|++++|++++-..
T Consensus        85 L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            56666666666665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.93  E-value=0.00015  Score=60.21  Aligned_cols=90  Identities=7%  Similarity=-0.144  Sum_probs=68.5

Q ss_pred             HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHccCCch
Q 038112           13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQAYGKNSMPD   90 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~   90 (625)
                      ..++.+..+...+....++.+.......+..++..+...|++++|...|+.++...+.+  ...++..++.++...|+++
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~   89 (168)
T CHL00033         10 FIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT   89 (168)
T ss_pred             ccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence            33455666777776655566455557778888889999999999999999998775332  2347888899999999999


Q ss_pred             HHHHHHHHhHHh
Q 038112           91 KALDVFQRMNEI  102 (625)
Q Consensus        91 ~A~~~~~~~~~~  102 (625)
                      +|+..++++...
T Consensus        90 eA~~~~~~Al~~  101 (168)
T CHL00033         90 KALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887553

>PRK15331 chaperone protein SicA; Provisional

Probab=97.93  E-value=7.7e-05  Score=58.75  Aligned_cols=87  Identities=11%  Similarity=-0.075  Sum_probs=71.1

Q ss_pred             HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112           12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK   91 (625)
Q Consensus        12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (625)
                      +..+|++++|..+|+.....+  +.++.-+..|+.++-..+++++|+..|..+...++ .++......+.++...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence            447888888888888887777  77888888888888888888888888888887764 466777788888888888888


Q ss_pred             HHHHHHHhHH
Q 038112           92 ALDVFQRMNE  101 (625)
Q Consensus        92 A~~~~~~~~~  101 (625)
                      |+..|+.+..
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            8888887744

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.92  E-value=0.00073  Score=56.34  Aligned_cols=83  Identities=12%  Similarity=0.007  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      +..+...+...|++++|...|++.++....+.  ...+..++.++.+.|++++|...+++.....+.+...+..+..++.
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~  117 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            44444555555555555555555554322211  2345555555566666666666666655555555555555555555


Q ss_pred             hCCCH
Q 038112          322 ENGKV  326 (625)
Q Consensus       322 ~~~~~  326 (625)
                      ..|+.
T Consensus       118 ~~g~~  122 (172)
T PRK02603        118 KRGEK  122 (172)
T ss_pred             HcCCh
Confidence            55543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.91  E-value=0.00034  Score=63.27  Aligned_cols=129  Identities=14%  Similarity=0.095  Sum_probs=67.6

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ-SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL  513 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  513 (625)
                      +|..++....+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+..++. ++.+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555566666666666665331 2233344433333222 34445566666666654 344555566666666


Q ss_pred             HcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          514 CSAGKVEDALQLYSNMKKRNCVPNL---VTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       514 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ...++.+.|..+|++.... ++++.   .+|...+..-.+.|+.+.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666654 22222   3566666666666666666666666665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.88  E-value=0.00023  Score=64.00  Aligned_cols=81  Identities=15%  Similarity=-0.082  Sum_probs=50.2

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccCCchHHHHHHHHhHH-------------hhCCCcc
Q 038112           45 LRRLIDPKLVVHVSRILELIEIQKCY---CPEDVALSVIQAYGKNSMPDKALDVFQRMNE-------------IFGCEAG  108 (625)
Q Consensus        45 ~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~~~~~~  108 (625)
                      +..+++.|+.......|+.+++.|..   .-..+|..|+.+|+-.++|+.|.++...-+.             ..+....
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            45677888888888888888887643   1123667778888888888888776543211             1122222


Q ss_pred             hhhhcCChHHHHHHHHH
Q 038112          109 ILCRKRQFEKAKRFLNS  125 (625)
Q Consensus       109 ~~~~~~~~~~A~~~~~~  125 (625)
                      .+--.|.|++|+.+..+
T Consensus       104 tlKv~G~fdeA~~cc~r  120 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFR  120 (639)
T ss_pred             hhhhhcccchHHHHHHH
Confidence            25556777777654443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.88  E-value=0.0015  Score=49.53  Aligned_cols=92  Identities=17%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHH
Q 038112          247 FIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLL  321 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~  321 (625)
                      +..++-..|+.++|+.+|++.+..|....  ...+..+...+...|++++|..+++......|.   +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            45556666777777777777777665433  334555666677777777777777777665554   4444444555666


Q ss_pred             hCCCHHHHHHHHHHHHH
Q 038112          322 ENGKVDEAISIWELLRE  338 (625)
Q Consensus       322 ~~~~~~~a~~~~~~~~~  338 (625)
                      ..|+.++|+..+-....
T Consensus        87 ~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            77777777766654443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.87  E-value=6.3e-05  Score=51.40  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG-DCDKALEIWNHILE  566 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  566 (625)
                      +..|..++..+...|++++|+..|++.++.+ +.+...+..++.++...| ++++|++.++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3444444555555555555555555555431 223444455555555555 35555555555444

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.85  E-value=0.0012  Score=64.94  Aligned_cols=143  Identities=15%  Similarity=0.131  Sum_probs=77.1

Q ss_pred             CCCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 038112          429 CSPTVVSYNTLINGLCKV-----ERFGEAYSFVKEMLEKGWKPDM-ITYSLLINGLCQS--------KKIDMALKLCCQF  494 (625)
Q Consensus       429 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~A~~~~~~~  494 (625)
                      .+.+...|...+++....     +....|..+|+++++.  .|+. ..+..+..++...        .+...+.+...+.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            345666777776664322     2355677777777764  4443 3333333322211        1122333333333


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          495 LQK-GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       495 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      ... ..+.+...+..+.......|++++|...++++...  .|+...|..++.++...|+.++|.+.++++..  +.|..
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~  486 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE  486 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence            221 12234455555555555566777777777776664  35666666667777777777777777777666  56655


Q ss_pred             HHHH
Q 038112          574 ISYN  577 (625)
Q Consensus       574 ~~~~  577 (625)
                      .+|.
T Consensus       487 pt~~  490 (517)
T PRK10153        487 NTLY  490 (517)
T ss_pred             chHH
Confidence            5443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.85  E-value=0.00028  Score=63.47  Aligned_cols=225  Identities=19%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             HHhcCChhhHHHHHHHHHhCCCC---CCchhhHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCCCcchHHHHHHHHH
Q 038112          145 LVKSGDLLGALAVFDEMFERGVE---TNVVCYNILIDGFFKKGDYMRAKEIWERLV----METSVYPNVVTYNVMINGLC  217 (625)
Q Consensus       145 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~  217 (625)
                      +++.|+......+|+.+++.|..   .=+.+|..|.++|.-.+++++|++....=+    ..+.-.....+...|...+-
T Consensus        27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130|consen   27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence            45556666666666666555432   112345555556666666666665432100    00101112233334445555


Q ss_pred             hcCChhhHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHC--
Q 038112          218 KCGRFDECLEMWDRMKK----NER-EKDSFTYCSFIHGLCKAGN--------------------VEGAERVYREMVES--  270 (625)
Q Consensus       218 ~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~--  270 (625)
                      -.|.+++|+-+..+-+.    .|. ......+..+...|...|.                    ++.|.+.|.+-++.  
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666554433221    110 1122334445555554442                    22233333222111  


Q ss_pred             --CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--
Q 038112          271 --GIF-VDAVTYNAMIDGFCRAGKIKECFELWEVMG----RKGCL--NVVSYNILIRGLLENGKVDEAISIWELLREK--  339 (625)
Q Consensus       271 --~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  339 (625)
                        |-. .--..|..+...|.-.|+++.|+...+.-.    +-+..  ...++..+..+++-.|+++.|.+.|+.....  
T Consensus       187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi  266 (639)
T KOG1130|consen  187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI  266 (639)
T ss_pred             HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence              000 011233344444445566666655443221    11111  3445556666666666666666666543322  


Q ss_pred             --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          340 --NC-NADSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       340 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                        |- .....+...+.+.|.-..++++|+.++.
T Consensus       267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~  299 (639)
T KOG1130|consen  267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ  299 (639)
T ss_pred             HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence              11 1122333445555555555555555554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.83  E-value=0.0075  Score=51.73  Aligned_cols=65  Identities=17%  Similarity=0.130  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL---NVVSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      ...+...+..+...|++.+|.+.|+.+....|.   ...+...++.++.+.|+++.|...++..+..-
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            344445555666677777777777777665543   44556666777777777777777777776653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0022  Score=54.29  Aligned_cols=125  Identities=14%  Similarity=0.093  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc----------
Q 038112           39 HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG----------  108 (625)
Q Consensus        39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------  108 (625)
                      .+-+.++..+...|.|.-....+..+++.+++.++.....+++.-.+.||.+.|...|+++.+..+....          
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            3445677788889999999999999999998889999999999999999999999999987543222111          


Q ss_pred             ---hhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          109 ---ILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus       109 ---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                         ++.-.+++.+|...|.+++..+ +.++..-|.-.-++.-.|+..+|++.++.|...
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence               1445556666666666665554 334444444333344456666666666666655

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.80  E-value=0.0018  Score=63.83  Aligned_cols=134  Identities=15%  Similarity=0.057  Sum_probs=82.3

Q ss_pred             CCCCHhhHHHHHHHHhc--c---CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcC--------CCHHHHHHHHHHH
Q 038112          464 WKPDMITYSLLINGLCQ--S---KKIDMALKLCCQFLQKGFTPD-VTMYNILIHGLCSA--------GKVEDALQLYSNM  529 (625)
Q Consensus       464 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~  529 (625)
                      .+.+...|...+++...  .   ++...|..+|+++++.  .|+ ...+..+..++...        .+...+.+...+.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            34555666666655432  2   2356777888887775  333 44444444333221        1233444444444


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          530 KKR-NCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       530 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ... ..+.++.++..++-.....|++++|...++++++  +.|+...|..++..+...|+.++|.+.+++...
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            332 1233456677776666677888888888888887  667777777777788888888888888887775

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.79  E-value=0.00065  Score=61.48  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING-LCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING  477 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  477 (625)
                      .+|..++...-+.+..+.|+.+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            468888888889999999999999998542 2345556555555 33356777799999998876 56677888888899


Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          478 LCQSKKIDMALKLCCQFLQKGFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       478 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      +...++.+.|..+|++.+.. +.++   ...|...+..-.+.|+.+.+..+.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999876 3333   358899998888999999999999999885

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.79  E-value=5.1e-05  Score=43.35  Aligned_cols=33  Identities=39%  Similarity=0.835  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112          575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILPT  607 (625)
Q Consensus       575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  607 (625)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466677777777777777777777777777665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.78  E-value=9.4e-05  Score=51.24  Aligned_cols=60  Identities=17%  Similarity=0.102  Sum_probs=52.1

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC   69 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   69 (625)
                      |.+++..+++++.|+..++.++..+  |.++..+...+.++.+.|++.+|.+.++.+++.+|
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4577888899999999999988887  88888888899999999999999999999998874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.76  E-value=4.8e-05  Score=51.80  Aligned_cols=57  Identities=16%  Similarity=0.069  Sum_probs=49.4

Q ss_pred             hCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCC
Q 038112           49 IDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCE  106 (625)
Q Consensus        49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  106 (625)
                      .+.|++++|.+.|+.++...| .+..+...++.+|.+.|++++|..+++++....|..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            468999999999999999974 588999999999999999999999999997765543

...

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.75  E-value=6e-05  Score=43.05  Aligned_cols=33  Identities=61%  Similarity=1.033  Sum_probs=18.7

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPD  467 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  467 (625)
                      +|+.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.74  E-value=0.00066  Score=63.81  Aligned_cols=124  Identities=14%  Similarity=0.184  Sum_probs=87.0

Q ss_pred             CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112          463 GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVT  540 (625)
Q Consensus       463 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  540 (625)
                      +.+.+...+..++..+....+.+.+..++.++...  ....-..+...+++.|...|..++++.++..=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            34556666777777777777777788877777664  1111123445777888888888888888887777788888888


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC  586 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  586 (625)
                      ++.|+..+.+.|++..|.++...|...+.-.+..++.-.+.+|++.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            8888888888888888888877777655555666665555566555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.73  E-value=7.5e-05  Score=42.28  Aligned_cols=32  Identities=19%  Similarity=0.434  Sum_probs=17.6

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC
Q 038112          575 SYNITLKGLCSCSRMSDAFEFLNDALCRGILP  606 (625)
Q Consensus       575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  606 (625)
                      +|+.++.+|.+.|+++.|.++++.|.+.|+.|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.71  E-value=0.00077  Score=48.90  Aligned_cols=74  Identities=16%  Similarity=0.390  Sum_probs=43.6

Q ss_pred             HHHccCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038112          547 GLFKTGDCDKALEIWNHILEERL-RPDIISYNITLKGLCSC--------SRMSDAFEFLNDALCRGILPTTITWHILVRA  617 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  617 (625)
                      .|...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+.        ++.-+.+..|+.|+..+++|+..+|+.++..
T Consensus        34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~  113 (120)
T PF08579_consen   34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS  113 (120)
T ss_pred             HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence            33444555555555555555555 55555555555544332        1234456677777777777777777777777


Q ss_pred             HHh
Q 038112          618 VMN  620 (625)
Q Consensus       618 ~~~  620 (625)
                      +.+
T Consensus       114 Llk  116 (120)
T PF08579_consen  114 LLK  116 (120)
T ss_pred             HHH
Confidence            654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.71  E-value=0.00044  Score=59.45  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             HHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHcc
Q 038112           10 NLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKN   86 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~   86 (625)
                      --+...|++..|...|..-++. ++.+-.+.+++-|+.++...|++++|...|..+.+..|.  .-++.+..|+.+..+.
T Consensus       149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            3344556666666666654432 344455566666666666666666666666666665432  2335666666666666


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      |+.++|...|+++.+.+|..+.+
T Consensus       229 ~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         229 GNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHH
Confidence            66666666666666666655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.70  E-value=0.00067  Score=60.08  Aligned_cols=101  Identities=12%  Similarity=-0.031  Sum_probs=70.0

Q ss_pred             HHHHHHHHHh-hCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112           39 HLFHHILRRL-IDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ  115 (625)
Q Consensus        39 ~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  115 (625)
                      ..++..+..+ .+.|++++|...|+.+++..|...  +..+..++.+|...|++++|...|+.+...+|..+.       
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~-------  215 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK-------  215 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-------
Confidence            4444444443 567888888888888888865432  467788888888888888888888888766654332       


Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                                        ...++..++..+...|+.+.|..+|+.+++.
T Consensus       216 ------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        216 ------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             ------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                              2334444555666777888888888877776

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.68  E-value=9.2e-05  Score=41.90  Aligned_cols=32  Identities=38%  Similarity=0.709  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                      +|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.67  E-value=0.0011  Score=62.35  Aligned_cols=124  Identities=16%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112          428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTM  505 (625)
Q Consensus       428 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  505 (625)
                      +.+.+......++..+....+.+++..++.+....  ....-..|...+++.|...|..+.++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            34456667788888888888899999999988865  2222234667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112          506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT  551 (625)
Q Consensus       506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  551 (625)
                      ++.|+..+.+.|++..|.++...|...+...++.++..-+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999998876666777766555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.66  E-value=0.042  Score=49.81  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=75.6

Q ss_pred             hcCChhhHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHH
Q 038112          218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFI--HGLCKAGNVEGAERVYREMVESGIFVDAV--TYNAMIDGFCRAGKIK  293 (625)
Q Consensus       218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  293 (625)
                      -.|+-..|.++-.+..+. +..|..-...++  ++-.-.|+++.|.+-|+.|...   |...  -+..|.-...+.|..+
T Consensus        96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence            356666666665544321 112333333333  3445678888888888888752   2221  1223333345678888


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      .|..+-+......|.-..++...+...+..|+++.|+++.+.-...
T Consensus       172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            8888888888877778888888888888888888888888766554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.64  E-value=0.012  Score=50.36  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch----
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----  109 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----  109 (625)
                      .++..+..-+...++.|++++|.+.|+.+..+.|.  -...+..-++.++.+.++++.|+..+++....+|..+++    
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            35677777888888999999999999999987643  234466667778889999999999999998988888887    


Q ss_pred             hhh-----------cCChH---HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHH
Q 038112          110 LCR-----------KRQFE---KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNI  175 (625)
Q Consensus       110 ~~~-----------~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  175 (625)
                      |.+           ..+..   .|..-|+.++.+=  ||             +.-...|...+..+...    =...=..
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--Pn-------------S~Ya~dA~~~i~~~~d~----LA~~Em~  172 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PN-------------SRYAPDAKARIVKLNDA----LAGHEMA  172 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CC-------------CcchhhHHHHHHHHHHH----HHHHHHH
Confidence            111           11222   2222222222221  11             11112222222222211    0011135


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCCcc---hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVV---TYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      +++.|.+.|.+..|..-++.+++..  +.+..   .+-.+..+|...|-.++|.+.-.-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            7888999999999999999999873  33333   4556678999999999998887666544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.033  Score=47.51  Aligned_cols=140  Identities=13%  Similarity=0.053  Sum_probs=105.4

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK-----GFTPDVTMYNIL  509 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l  509 (625)
                      ..+.++..+...|.+.-....+.+.++...+.+......+++.-.+.|+.+.|...|++..+.     ++..+..+....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            445667777778888888889999988766667778888888889999999999999876653     223333334444


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYN  577 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  577 (625)
                      ...|.-.+++..|...+.++...+ +.|+...|.-+-+..-.|+...|++..+.+.+  ..|.+.+-.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e  323 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE  323 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence            455667788999999998888763 44677777777778888999999999999998  666554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.57  E-value=0.00098  Score=51.43  Aligned_cols=64  Identities=5%  Similarity=-0.148  Sum_probs=42.9

Q ss_pred             HHHHccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH
Q 038112           10 NLLKAEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE   73 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   73 (625)
                      .-..+.|+|.+|+..|+.+..+. ..+..+.+-..++.++.+++++++|...+++.++.+|....
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            44566777777777777766543 33455566666777777777777777777777777654333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.56  E-value=0.09  Score=50.85  Aligned_cols=321  Identities=11%  Similarity=0.039  Sum_probs=166.2

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---h--
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---L--  110 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~--  110 (625)
                      .+...|..++.--......+.+..+|..++..- |.-...|...+..-.+.|..+.+..+|++.....|.....   |  
T Consensus        43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~  121 (577)
T KOG1258|consen   43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA  121 (577)
T ss_pred             hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344555555544334444455666666666553 4344566677777778888888888888877766654444   1  


Q ss_pred             ---hhcCChHHHHHHHHHHHHC-CCC-CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHH---Hh
Q 038112          111 ---CRKRQFEKAKRFLNSLWEK-GLK-PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGF---FK  182 (625)
Q Consensus       111 ---~~~~~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~  182 (625)
                         ...|+.+..+..|+++... |.. -....|...|..-..++++.....++++.++.-    ...++.....|   .+
T Consensus       122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~  197 (577)
T KOG1258|consen  122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN  197 (577)
T ss_pred             HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence               1346667777777776654 211 234457777777777788888888888877651    11122111111   11


Q ss_pred             c------CChhHHHHHHHHHHhCC---CCCCCcchHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112          183 K------GDYMRAKEIWERLVMET---SVYPNVVTYNVMINGLCK-CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC  252 (625)
Q Consensus       183 ~------g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (625)
                      .      ...+++.++-.....+.   ...+....+...+.--.. .+..+++...+.+..           ..--..+.
T Consensus       198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~  266 (577)
T KOG1258|consen  198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ  266 (577)
T ss_pred             cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence            1      12222222211111100   000000001110000000 001111111111100           00011222


Q ss_pred             hcCCHHHHHHHHHHHHHCC---CC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112          253 KAGNVEGAERVYREMVESG---IF----VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       253 ~~~~~~~a~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (625)
                      ......+....++..++..   ++    ++..+|...+..-...|+++.+.-+|+...-........|...+......|+
T Consensus       267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~  346 (577)
T KOG1258|consen  267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD  346 (577)
T ss_pred             hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence            2223333444444444331   12    2356777778888888999999999988876555577788888888888888


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  372 (625)
                      .+-|..++....+...+-.+.+...-....-..|++..|..+++.+.
T Consensus       347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~  393 (577)
T KOG1258|consen  347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE  393 (577)
T ss_pred             hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            88888777766665433233332222233444567777777777443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.56  E-value=0.0048  Score=50.65  Aligned_cols=87  Identities=10%  Similarity=-0.120  Sum_probs=47.0

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ   97 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   97 (625)
                      ++.|.--|.+++...  |.-|.+++.++--+...|+++.|.+.|..+...+|.-+....+.-+.. .-.|++.-|.+-|.
T Consensus        81 ~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~  157 (297)
T COG4785          81 RALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLL  157 (297)
T ss_pred             HHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHH
Confidence            344555555555444  566666666666566666666666666666666544333333333332 24566666666555


Q ss_pred             HhHHhhCCCc
Q 038112           98 RMNEIFGCEA  107 (625)
Q Consensus        98 ~~~~~~~~~~  107 (625)
                      +.-+..|..|
T Consensus       158 ~fYQ~D~~DP  167 (297)
T COG4785         158 AFYQDDPNDP  167 (297)
T ss_pred             HHHhcCCCCh
Confidence            5555444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.43  E-value=0.0031  Score=48.72  Aligned_cols=75  Identities=15%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      ..++..+..-+....+.|++.+|.+.|+.+..+-|.  -...+...++.+|.+.+++++|+..+++..+.+|..+.+
T Consensus         7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen    7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            455777888888899999999999999999998653  244577789999999999999999999999999998887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.41  E-value=0.062  Score=52.10  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=56.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038112          275 DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLING  354 (625)
Q Consensus       275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  354 (625)
                      +..+...+..-+.+...+.-|-++|..+...        ..+.+.....+++++|..+-++..+.    -...+....+-
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqw  813 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQW  813 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCccc----cccccchHHHH
Confidence            3445555555556667777777777776542        34566677778888887776654443    22234444455


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 038112          355 LCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMD  390 (625)
Q Consensus       355 ~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~  390 (625)
                      +....++++|.+.|-+     .|+..+|..+++++.
T Consensus       814 LAE~DrFeEAqkAfhk-----AGr~~EA~~vLeQLt  844 (1081)
T KOG1538|consen  814 LAENDRFEEAQKAFHK-----AGRQREAVQVLEQLT  844 (1081)
T ss_pred             hhhhhhHHHHHHHHHH-----hcchHHHHHHHHHhh
Confidence            5555666666555543     233444444444444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.41  E-value=0.0035  Score=45.64  Aligned_cols=76  Identities=24%  Similarity=0.442  Sum_probs=50.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKRNC-VPNLVTYNTLMDGLFKTG--------DCDKALEIWNHILEERLRPDIISYNITL  580 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l~  580 (625)
                      +.-+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        ..-..+.+|+.++..+++|+.++|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3344455777777777777777776 667777777666655422        2334566777787777888888888777


Q ss_pred             HHHhh
Q 038112          581 KGLCS  585 (625)
Q Consensus       581 ~~~~~  585 (625)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            76654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.026  Score=47.55  Aligned_cols=206  Identities=14%  Similarity=0.147  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhH
Q 038112           75 VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGA  154 (625)
Q Consensus        75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  154 (625)
                      .|.....+|-...+++.|...+.+..+-+..+.+.+...+.++.|.-+.+++..-+  .-+..|+.....|..+|..+.|
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCCcchH
Confidence            44455556666777777777777766555555666666666777777777665532  3345567777778888888887


Q ss_pred             HHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 038112          155 LAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET----SVYPNVVTYNVMINGLCKCGRFDECLEMWD  230 (625)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  230 (625)
                      -..+++.-+.                ...-+.+.|+++|++....-    ....-...+......+.+...+++|-..+.
T Consensus       111 AmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l  174 (308)
T KOG1585|consen  111 AMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL  174 (308)
T ss_pred             HHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence            7777665443                11223344444444432210    000111123334455666666666655444


Q ss_pred             HHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112          231 RMKKN----EREKD-SFTYCSFIHGLCKAGNVEGAERVYREMVESGI---FVDAVTYNAMIDGFCRAGKIKECFELW  299 (625)
Q Consensus       231 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~  299 (625)
                      +-...    .--++ -..|...|-.+....++..|...++.--+.+-   .-+..+...|+.+| ..|+.+++.+++
T Consensus       175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            32210    00111 12344455555566677777777766444321   12344555555554 345555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.37  E-value=0.0013  Score=45.49  Aligned_cols=54  Identities=20%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          512 GLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       512 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .|.+.+++++|.++++.+...+ |.++..+...+.++...|++++|.+.++++++
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3445555555555555555541 33444455555555555555555555555555

>PRK15331 chaperone protein SicA; Provisional

Probab=97.37  E-value=0.016  Score=46.02  Aligned_cols=92  Identities=13%  Similarity=0.077  Sum_probs=68.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112          247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV  326 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  326 (625)
                      ...-+...|++++|..+|.-+.-.++. +..-+..|..++...+++++|+..|.......+.|+........++...|+.
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            344455778888888888777765433 6666777777777788888888888777777667777777778888888888


Q ss_pred             HHHHHHHHHHHHc
Q 038112          327 DEAISIWELLREK  339 (625)
Q Consensus       327 ~~a~~~~~~~~~~  339 (625)
                      +.|...|......
T Consensus       122 ~~A~~~f~~a~~~  134 (165)
T PRK15331        122 AKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHhC
Confidence            8888887777763

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.29  E-value=0.00043  Score=38.02  Aligned_cols=28  Identities=46%  Similarity=0.859  Sum_probs=13.7

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444555555555555555555544443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.042  Score=48.11  Aligned_cols=153  Identities=10%  Similarity=-0.003  Sum_probs=80.3

Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112           42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR  121 (625)
Q Consensus        42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  121 (625)
                      ..-+......|++.+|..+|..+....+. +..+...++.+|...|+++.|..++..++.....                
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~----------------  200 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD----------------  200 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----------------
Confidence            33444555667777777777777766533 4566666777777777777777777666431110                


Q ss_pred             HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038112          122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS  201 (625)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  201 (625)
                                 ........-+..+.+.....+...+-++.-..  +-|...-..++..+...|+.+.|.+.+-.+.+.+.
T Consensus       201 -----------~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         201 -----------KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             -----------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                       00011111122223333333333333332222  22555566666777777777777776666655543


Q ss_pred             CCCCcchHHHHHHHHHhcCChhh
Q 038112          202 VYPNVVTYNVMINGLCKCGRFDE  224 (625)
Q Consensus       202 ~~~~~~~~~~l~~~~~~~g~~~~  224 (625)
                      ...|...-..++..+.-.|.-+.
T Consensus       268 ~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         268 GFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             cccCcHHHHHHHHHHHhcCCCCH
Confidence            34444455566665555554333

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.28  E-value=0.088  Score=51.11  Aligned_cols=271  Identities=14%  Similarity=0.115  Sum_probs=130.2

Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112          173 YNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC  252 (625)
Q Consensus       173 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (625)
                      +..-+..|...|.+++|.++----       -...-|..|.......=+++-|.+.|.+....                 
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclg-------Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-----------------  614 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLG-------VTDTDWRELAMEALEALDFETARKAYIRVRDL-----------------  614 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccc-------eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-----------------
Confidence            333444566667776665532111       11223555554444444444444444433211                 


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHHhCCCHH
Q 038112          253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVS-----YNILIRGLLENGKVD  327 (625)
Q Consensus       253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~  327 (625)
                         .+-+.+.-++++.+.|-.|+...   +...++-.|++.+|-++|.+-...+.. .+.     ...+.+-+...|..+
T Consensus       615 ---~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRA-lEmyTDlRMFD~aQE~~~~g~~~  687 (1081)
T KOG1538|consen  615 ---RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRA-LEMYTDLRMFDYAQEFLGSGDPK  687 (1081)
T ss_pred             ---HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhH-HHHHHHHHHHHHHHHHhhcCChH
Confidence               12222333455555555555432   233444556666666665543322110 011     112333444455544


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 038112          328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNG  407 (625)
Q Consensus       328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  407 (625)
                      +-..+.++-.+..  -+..--......+...|+.++|..+.-+     .+=.+.++    ++...-...+..+...+...
T Consensus       688 eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d-----~gW~d~li----dI~rkld~~ere~l~~~a~y  756 (1081)
T KOG1538|consen  688 EKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGD-----HGWVDMLI----DIARKLDKAEREPLLLCATY  756 (1081)
T ss_pred             HHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhc-----ccHHHHHH----HHHhhcchhhhhHHHHHHHH
Confidence            4444433322210  0111122344556667777777666541     11111112    22222122344555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHh-----------hHHHHHH
Q 038112          408 FIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMI-----------TYSLLIN  476 (625)
Q Consensus       408 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~  476 (625)
                      +.+...+.-|-++|..|-..         ..+.+.....+++.+|..+-+...+  +.|+..           -|...-.
T Consensus       757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHH
Confidence            67777788888888776532         3456677788899999888777655  233322           1223334


Q ss_pred             HHhccCCHHHHHHHHHHHHh
Q 038112          477 GLCQSKKIDMALKLCCQFLQ  496 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~  496 (625)
                      +|.+.|+-.+|..+++++..
T Consensus       826 AfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  826 AFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHhcchHHHHHHHHHhhh
Confidence            55566666666666665543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0088  Score=54.56  Aligned_cols=96  Identities=11%  Similarity=0.084  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII-SYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~  581 (625)
                      ..+++.++.+|.+.+++.+|+..-++.+..+ ++|...+..-+.++...|+++.|+..|+++++  +.|+.. +-..++.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIK  333 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence            3466778889999999999999999999874 67888999999999999999999999999999  888654 4444444


Q ss_pred             HHhhcCCh-HHHHHHHHHHHH
Q 038112          582 GLCSCSRM-SDAFEFLNDALC  601 (625)
Q Consensus       582 ~~~~~g~~-~~A~~~~~~~~~  601 (625)
                      .-.+..+. +...++|..|..
T Consensus       334 l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  334 LKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            44343333 345788888864

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.25  E-value=0.00049  Score=37.81  Aligned_cols=29  Identities=28%  Similarity=0.655  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112          575 SYNITLKGLCSCSRMSDAFEFLNDALCRG  603 (625)
Q Consensus       575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  603 (625)
                      +|+.++.+|.+.|++++|.+++++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555556666666666666666655544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.21  E-value=0.021  Score=46.07  Aligned_cols=73  Identities=19%  Similarity=0.323  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 038112          277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHG  349 (625)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  349 (625)
                      .+...++..+...|++++|..+.+.+....|.+...|..++.++...|+..+|.++|+.+..     .|+.|+..+-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            34556777888899999999999999999999999999999999999999999999988753     48888776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.21  E-value=0.006  Score=49.23  Aligned_cols=58  Identities=19%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHH
Q 038112          138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERL  196 (625)
Q Consensus       138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  196 (625)
                      ...++..+...|+++.|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3334444445555555555555555542 224445555555555555555555555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.16  E-value=0.0048  Score=57.66  Aligned_cols=100  Identities=19%  Similarity=0.131  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 038112          500 TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL----VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS  575 (625)
Q Consensus       500 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  575 (625)
                      +.+...++.++.+|...|++++|+..|++.++.  .|+.    .+|.+++.+|...|+.++|+..++++++.+ .|   .
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~  145 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K  145 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence            446889999999999999999999999999985  4553    359999999999999999999999999831 22   2


Q ss_pred             HHHHHH--HHhhcCChHHHHHHHHHHHHCCCC
Q 038112          576 YNITLK--GLCSCSRMSDAFEFLNDALCRGIL  605 (625)
Q Consensus       576 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~  605 (625)
                      |..+..  .+....+.++..++++.+.+.|..
T Consensus       146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~  177 (453)
T PLN03098        146 FSTILNDPDLAPFRASPEFKELQEEARKGGED  177 (453)
T ss_pred             HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence            221111  122223445777788888776643

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.0056  Score=52.87  Aligned_cols=99  Identities=9%  Similarity=-0.009  Sum_probs=71.7

Q ss_pred             HHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHH
Q 038112           41 FHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEK  118 (625)
Q Consensus        41 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (625)
                      .+..+..+.+.|++..|...|...++..|.  -.+..++.|++++...|++++|...|..+.+.+|..+.+         
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---------  214 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---------  214 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---------
Confidence            444555666788899999999999988653  234577889999999999999999999887777655433         


Q ss_pred             HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          119 AKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus       119 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                                      +..+..|.....+.|+.++|..+|+++++.
T Consensus       215 ----------------pdallKlg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         215 ----------------PDALLKLGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             ----------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence                            344555555666667777777777776665

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.14  E-value=0.28  Score=47.62  Aligned_cols=134  Identities=12%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI  248 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (625)
                      +...|..++.--....+.+.+..++..++..  .|.-..-|......-.+.|..+.+.++|++.... ++.+...|....
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence            3444554544433444456666677776654  2222234566666666778888888888877643 335555665555


Q ss_pred             HHHH-hcCCHHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          249 HGLC-KAGNVEGAERVYREMVES-GI-FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       249 ~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      ..+. ..|+.+.....|+.++.. |. -.+...|...+..-..++++.....+++.+...
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            4433 456777777777777654 21 123455666666667777777777777777765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.14  E-value=0.0013  Score=46.08  Aligned_cols=61  Identities=28%  Similarity=0.433  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKR----NC-VPN-LVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      +++.++.+|...|++++|+++|++..+.    |- .|+ ..++..++.++...|++++|++++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555554432    10 011 3344455555555555555555555544

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.38  Score=48.65  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          544 LMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       544 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      ++..+....+.+.++.+.+..-+.    ++..|..++..+.+.+..+.-.+...+.
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~v  762 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKV  762 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence            444555556666666655544321    5566666666666665444444444433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.10  E-value=0.24  Score=46.08  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=33.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112          403 SLMNGFIQASKLENAIFLFKEMSRKG---CSPTVVSYNTLINGLCK---VERFGEAYSFVKEMLEKGWKPDMITYSLLIN  476 (625)
Q Consensus       403 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  476 (625)
                      .++-+|-...+++..+++++.+....   +......--...-++.+   .|+.++|+.++..+......++..++..+++
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34444555555555555555555431   00011111122223333   4555555555555443334445555555544


Q ss_pred             HH
Q 038112          477 GL  478 (625)
Q Consensus       477 ~~  478 (625)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            43

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.08  E-value=0.21  Score=46.44  Aligned_cols=169  Identities=12%  Similarity=0.049  Sum_probs=110.8

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038112          436 YNTLINGLCKVERFGEAYSFVKEMLEKG---WKPDMITYSLLINGLCQ---SKKIDMALKLCCQFLQKGFTPDVTMYNIL  509 (625)
Q Consensus       436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  509 (625)
                      ...++-+|....+++..+++++.+....   +......-...+.++.+   .|+.++|+.++..+......+++.++..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3355556888999999999999988742   11123333345556666   89999999999996665567888899888


Q ss_pred             HHHHH----c-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChh----HHHHHH---H-HHHHcCCCC-
Q 038112          510 IHGLC----S-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD----KALEIW---N-HILEERLRP-  571 (625)
Q Consensus       510 ~~~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~-~~~~~~~~p-  571 (625)
                      +..|-    .     ....++|+..|.+..+.  .||...--+++..+...|...    +..++-   . .+.++|... 
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            87664    2     23578999999998874  466544444444444444322    222222   1 122333222 


Q ss_pred             --CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 038112          572 --DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT  608 (625)
Q Consensus       572 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  608 (625)
                        +.-.+.+++.++.-.|+.++|.+.+++|.+.  .|+.
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~  338 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPA  338 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcc
Confidence              3344566777888899999999999999864  3444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.07  E-value=0.002  Score=45.16  Aligned_cols=64  Identities=23%  Similarity=0.281  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          538 LVTYNTLMDGLFKTGDCDKALEIWNHILEE--RLRP---D-IISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ..+++.++.+|...|++++|+..|+++++.  ...+   + ..++..+..+|...|++++|.+++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            457899999999999999999999999862  1222   2 35678888999999999999999999864

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.07  E-value=0.018  Score=56.37  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=58.9

Q ss_pred             CCCHHHHHHHHH---ccCChhHHHHHHHhhccCCCCCCCHHHH------HHHHHHhh----CCCChhHHHHHHHHHHHhc
Q 038112            2 VISAKRLLNLLK---AEKNPHTALALFDSATREPGYAHSPHLF------HHILRRLI----DPKLVVHVSRILELIEIQK   68 (625)
Q Consensus         2 ~~~~~~l~~~l~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~~~~~~~a~~~~~~~~~~~   68 (625)
                      |+-|..+.+++.   ..||-+.+++.+..+.+..+. ..+.+-      +.++....    .....+.|.+++..+.++.
T Consensus       185 SlLPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y  263 (468)
T PF10300_consen  185 SLLPPKVLKLLSFVGFSGDRELGLRLLWEASKSENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY  263 (468)
T ss_pred             HhCCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC
Confidence            455666665554   668888888888877664433 333222      22222222    2456677888888888774


Q ss_pred             CCCCHHHHHHHHHHHHccCCchHHHHHHHHhH
Q 038112           69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMN  100 (625)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  100 (625)
                       |...--...-++.+...|+.++|++.|++..
T Consensus       264 -P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~  294 (468)
T PF10300_consen  264 -PNSALFLFFEGRLERLKGNLEEAIESFERAI  294 (468)
T ss_pred             -CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence             3344444456677777888888888888653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.42  Score=47.70  Aligned_cols=332  Identities=13%  Similarity=0.116  Sum_probs=173.8

Q ss_pred             CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038112            4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQ   81 (625)
Q Consensus         4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   81 (625)
                      +-..+.+-|...+.|..|+++-.++ +.+.. ....++...++.+.+..  .-+++.+....=++.. -.+.-.|..+++
T Consensus       439 ~~~~vi~Rl~~r~~Y~vaIQva~~l-~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~  515 (829)
T KOG2280|consen  439 SEEVVIDRLVDRHLYSVAIQVAKLL-NLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIAR  515 (829)
T ss_pred             chhhhhHHHHhcchhHHHHHHHHHh-CCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHH
Confidence            3345566677778899999888873 33211 22466666676666553  2223333333222221 134556777777


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH---------HhcCChh
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL---------VKSGDLL  152 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~  152 (625)
                      -...+|+++-|+.+++.- ...+.....+.+.++++.|+.   ++.+.+ .++. ++..++..-         ....+..
T Consensus       516 ~Ay~~GR~~LA~kLle~E-~~~~~qV~lLL~m~~~~~AL~---kaies~-d~~L-i~~Vllhlk~~~~~s~l~~~l~~~p  589 (829)
T KOG2280|consen  516 RAYQEGRFELARKLLELE-PRSGEQVPLLLKMKDSSLALK---KAIESG-DTDL-IIQVLLHLKNKLNRSSLFMTLRNQP  589 (829)
T ss_pred             HHHhcCcHHHHHHHHhcC-CCccchhHHHhccchHHHHHH---HHHhcC-Cchh-HHHHHHHHHHHHHHHHHHHHHHhch
Confidence            777889999888888754 223333444666677666654   333333 1222 222222111         1112233


Q ss_pred             hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHH-H-HhCCCCCCCcchHHHHHHHHHhcCChhhH-----
Q 038112          153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER-L-VMETSVYPNVVTYNVMINGLCKCGRFDEC-----  225 (625)
Q Consensus       153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-----  225 (625)
                      .|..+|.+..+..   +..+   +-. +..+++-..+...|.. - .......+-..........+.+.....-.     
T Consensus       590 ~a~~lY~~~~r~~---~~~~---l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  590 LALSLYRQFMRHQ---DRAT---LYD-FYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             hhhHHHHHHHHhh---chhh---hhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence            3444444443321   1111   111 1222222222222211 0 01000111222233333444443331111     


Q ss_pred             -----HHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112          226 -----LEMWDRMK-KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW  299 (625)
Q Consensus       226 -----~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  299 (625)
                           +.+.+.+. +.+..-...+.+-.+.-+...|+-.+|.++-.+..    -||-..|-.-+.+++..+++++-+++-
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA  738 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA  738 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence                 11111111 12223344455666677778888888888877654    357778888888888888888776655


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          300 EVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                      +...     ++..|.....+|.+.|+.++|.+++.+....         .....+|.+.|++.+|.+.--
T Consensus       739 kskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  739 KSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             hccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence            4432     4667777888899999999998887543322         146677888888888876543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.53  Score=47.01  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=75.8

Q ss_pred             HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038112          468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDG  547 (625)
Q Consensus       468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  547 (625)
                      ..+.+.-+..+...|+..+|.++-.++.    -||...|..-+.+++..+++++-+++-+...      ++.-|.-...+
T Consensus       684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~  753 (829)
T KOG2280|consen  684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA  753 (829)
T ss_pred             cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence            3445555666777788888888766653    4677777777788888888877666544433      24456667778


Q ss_pred             HHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 038112          548 LFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLND  598 (625)
Q Consensus       548 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  598 (625)
                      |.+.|+.++|.+++-+.-.     ..    -...+|.+.|++.+|.+..-+
T Consensus       754 c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence            8888888888887765432     11    456677778888777765443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.92  E-value=0.021  Score=53.62  Aligned_cols=68  Identities=10%  Similarity=-0.075  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112           34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE---DVALSVIQAYGKNSMPDKALDVFQRMNEI  102 (625)
Q Consensus        34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  102 (625)
                      .|.++.++..++.+|...|++++|+..|++++..+|. +.   ..++.++.+|...|++++|+..++++.+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3678899999999999999999999999999999754 44   35899999999999999999999998663

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.16  Score=44.66  Aligned_cols=49  Identities=10%  Similarity=0.158  Sum_probs=19.1

Q ss_pred             hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHH
Q 038112          182 KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRM  232 (625)
Q Consensus       182 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  232 (625)
                      ..|++.+|...|.......  +.+......++.+|...|+.+.|..++..+
T Consensus       146 ~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            3344444444444433331  222233333344444444444444444433

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.83  E-value=0.023  Score=47.26  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=66.1

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC----------
Q 038112          488 LKLCCQFLQKGFTPDVTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG----------  552 (625)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------  552 (625)
                      ...|+....  ...+..+|..++..|.+     .|..+=....+..|.+.|+..|..+|+.|++++=+..          
T Consensus        34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~  111 (228)
T PF06239_consen   34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE  111 (228)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence            344444422  24578888888888874     4677777888888999899999999999999876521          


Q ss_pred             ------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112          553 ------DCDKALEIWNHILEERLRPDIISYNITLKGLCSC  586 (625)
Q Consensus       553 ------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  586 (625)
                            +-+-|++++++|...|+-||.+++..++..+.+.
T Consensus       112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~  151 (228)
T PF06239_consen  112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK  151 (228)
T ss_pred             hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence                  2233566666666666666666666666665443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.021  Score=52.28  Aligned_cols=96  Identities=14%  Similarity=0.117  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHH
Q 038112          136 YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMING  215 (625)
Q Consensus       136 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  215 (625)
                      ..+..+..++.+.+++..|+...++.+..+ ++|+.....-..++...|+++.|+..|+++.+..  |.|-.+-+.++.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence            456777788889999999999999999885 4488888888999999999999999999998863  3344445555555


Q ss_pred             HHhcCChh-hHHHHHHHHHh
Q 038112          216 LCKCGRFD-ECLEMWDRMKK  234 (625)
Q Consensus       216 ~~~~g~~~-~a~~~~~~~~~  234 (625)
                      --+..... ...++|..|..
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            55544444 34677777764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.74  Score=46.71  Aligned_cols=83  Identities=11%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      +.-|..+|++++|...|-+.+.   .-..++    ++.-+....+..+...+++.+.+.+.. +.+....|+.+|.+.++
T Consensus       375 gd~Ly~Kgdf~~A~~qYI~tI~---~le~s~----Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd  446 (933)
T KOG2114|consen  375 GDYLYGKGDFDEATDQYIETIG---FLEPSE----VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD  446 (933)
T ss_pred             HHHHHhcCCHHHHHHHHHHHcc---cCChHH----HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence            3456688999999998888662   233333    455566777888888899999988754 66777788999999998


Q ss_pred             chHHHHHHHHh
Q 038112           89 PDKALDVFQRM   99 (625)
Q Consensus        89 ~~~A~~~~~~~   99 (625)
                      .+.-.+..+..
T Consensus       447 ~~kL~efI~~~  457 (933)
T KOG2114|consen  447 VEKLTEFISKC  457 (933)
T ss_pred             hHHHHHHHhcC
Confidence            88777766655

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.27  Score=41.43  Aligned_cols=29  Identities=10%  Similarity=0.146  Sum_probs=17.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      +..+.......+++.+|+++|+++....+
T Consensus       157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~  185 (288)
T KOG1586|consen  157 LLKVAQYAAQLEQYSKAIDIYEQVARSSL  185 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344444556677777777777665543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.75  E-value=0.39  Score=45.69  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK  234 (625)
Q Consensus       171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  234 (625)
                      .+-..++.++-+.|+.++|++.+.++.+..+...+......|+.++...+.+.++..++.+..+
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3344566666677777777777777776532222334566677777777777777777777643

The molecular function of this protein is uncertain.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.75  E-value=0.055  Score=45.17  Aligned_cols=107  Identities=13%  Similarity=0.196  Sum_probs=81.8

Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-----------
Q 038112          453 YSFVKEMLEKGWKPDMITYSLLINGLCQ-----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA-----------  516 (625)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------  516 (625)
                      ...|+....  -..+..+|..++..+.+     .|..+=....++.|.+.|+.-|..+|+.|+.++-+.           
T Consensus        34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~  111 (228)
T PF06239_consen   34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE  111 (228)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence            344554432  24588899999998874     456666777788888999999999999999987542           


Q ss_pred             -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038112          517 -----GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHI  564 (625)
Q Consensus       517 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  564 (625)
                           .+-+-|++++++|...|+-||..++..|+..+.+.+.   +..-+.+|
T Consensus       112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~---p~~K~~rm  161 (228)
T PF06239_consen  112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH---PMKKYRRM  161 (228)
T ss_pred             hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH---HHHHHHHH
Confidence                 2456799999999999999999999999999876554   44444444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.72  E-value=0.0044  Score=37.33  Aligned_cols=39  Identities=8%  Similarity=-0.080  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSV   79 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   79 (625)
                      ++..++.++.+.|++++|+++|+++++..| .+...+..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence            444555555555555555555555555542 344444443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.71  E-value=0.029  Score=42.01  Aligned_cols=85  Identities=12%  Similarity=-0.026  Sum_probs=45.2

Q ss_pred             HHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-----------hhhc
Q 038112           45 LRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-----------LCRK  113 (625)
Q Consensus        45 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~  113 (625)
                      +.+++..|+.+.|++.|.+.+..- |..+..|+.-++.+--+|+.++|++-+++.++..+.....           |...
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            334455555555555555555553 3355555555555555555555555555555433332222           4445


Q ss_pred             CChHHHHHHHHHHHHCC
Q 038112          114 RQFEKAKRFLNSLWEKG  130 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~  130 (625)
                      |+-+.|+.-|+...+.|
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            66666666666655554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.65  E-value=0.19  Score=49.51  Aligned_cols=162  Identities=14%  Similarity=0.121  Sum_probs=97.5

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCH-----hhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 038112          436 YNTLINGLCKVERFGEAYSFVKEMLEKG-WKPDM-----ITYSLLINGLCQ----SKKIDMALKLCCQFLQKGFTPDVTM  505 (625)
Q Consensus       436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~  505 (625)
                      +..++...+-.|+-+.+++.+....+.+ +.-..     ..|..++..+..    ..+.+.|.++++.+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            4455555556677777777776665432 11111     122333332222    34667788888888775  455544


Q ss_pred             HH-HHHHHHHcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112          506 YN-ILIHGLCSAGKVEDALQLYSNMKKRN---CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLK  581 (625)
Q Consensus       506 ~~-~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  581 (625)
                      |. .-++.+...|++++|++.|++.....   .+.....+..++.++.-.+++++|.+.|..+.+.. .-+..+|..+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            43 33566777888888888888765321   11234556678888888888888888888888731 113344444433


Q ss_pred             -HHhhcCCh-------HHHHHHHHHHH
Q 038112          582 -GLCSCSRM-------SDAFEFLNDAL  600 (625)
Q Consensus       582 -~~~~~g~~-------~~A~~~~~~~~  600 (625)
                       ++...|+.       ++|.+++.+..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence             44456777       77888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.048  Score=48.31  Aligned_cols=149  Identities=13%  Similarity=0.032  Sum_probs=100.6

Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHC---CCCCCHhHHHHHHHHHHhcCCh
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEK---GLKPDVYSYGTVINGLVKSGDL  151 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~  151 (625)
                      .+...|++-+|-..++++++.+|...-+       +.-.|+.+.-...+++++..   ++|-..+....+.-++...|-+
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3446777888888888888887776554       66678888888888888765   2222233333344455678899


Q ss_pred             hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cchHHHHHHHHHhcCChhhHHH
Q 038112          152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVTYNVMINGLCKCGRFDECLE  227 (625)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~  227 (625)
                      ++|.+.-++..+.+ +.|...-......+...|+..++.++...-...  ....    ...|-...-.+...+.++.|++
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~--Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD--WRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc--hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            99998888888774 336667777788888889999888876654332  1121    1223334456777789999999


Q ss_pred             HHHHHH
Q 038112          228 MWDRMK  233 (625)
Q Consensus       228 ~~~~~~  233 (625)
                      +|++-.
T Consensus       269 IyD~ei  274 (491)
T KOG2610|consen  269 IYDREI  274 (491)
T ss_pred             HHHHHH
Confidence            997643

>PRK11906 transcriptional regulator; Provisional

Probab=96.58  E-value=0.14  Score=48.40  Aligned_cols=148  Identities=14%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHHHHC-CCCCC-HhhHHHHHHHHhc---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038112          448 RFGEAYSFVKEMLEK-GWKPD-MITYSLLINGLCQ---------SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSA  516 (625)
Q Consensus       448 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  516 (625)
                      ..+.|+.+|.+.... ...|+ ...|..+..++..         ..+..+|.++.++..+.+ +.|+.....++.+..-.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            456788899998822 24555 3444444443321         233556788888888876 55888888888888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCChHHHH
Q 038112          517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI---ISYNITLKGLCSCSRMSDAF  593 (625)
Q Consensus       517 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~  593 (625)
                      ++++.|...|++....+ +....+|...+..+.-.|+.++|.+.++++++  +.|..   .+....++.|+..+ .++|+
T Consensus       352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhH
Confidence            89999999999999863 44477888899999999999999999999988  77743   34444455777665 57788


Q ss_pred             HHHHHHH
Q 038112          594 EFLNDAL  600 (625)
Q Consensus       594 ~~~~~~~  600 (625)
                      +++-+-.
T Consensus       428 ~~~~~~~  434 (458)
T PRK11906        428 KLYYKET  434 (458)
T ss_pred             HHHhhcc
Confidence            8776554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.54  E-value=0.0098  Score=35.82  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILI  317 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  317 (625)
                      ++..+...|.+.|++++|+++|+++.+..|.++.+|..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            4556666777777777777777777777666666666554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.50  E-value=0.11  Score=39.15  Aligned_cols=84  Identities=20%  Similarity=0.035  Sum_probs=46.6

Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCCh
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPD---VYSYGTVINGLVKSGDL  151 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  151 (625)
                      +++..|+.+.|++.|.+.+..-|..+++       +.-+|+.++|+.-+++.++..-+..   ..+|..-...|...|+.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            4556666666666666666655555554       4455666666666666655321111   12233333445556666


Q ss_pred             hhHHHHHHHHHhCC
Q 038112          152 LGALAVFDEMFERG  165 (625)
Q Consensus       152 ~~a~~~~~~~~~~~  165 (625)
                      +.|..=|+..-+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            66666666666655

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.42  E-value=0.63  Score=41.41  Aligned_cols=203  Identities=19%  Similarity=0.112  Sum_probs=128.0

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFER-GVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI  213 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  213 (625)
                      ...+......+...+++..+...+...... ........+......+...+++..+...+.......  +.+........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  136 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD--PDPDLAEALLA  136 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC--CCcchHHHHHH
Confidence            455566666677777777777777776652 233355566666777777777888888887776643  11112222333


Q ss_pred             H-HHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038112          214 N-GLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG  290 (625)
Q Consensus       214 ~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  290 (625)
                      . .+...|+++.+...+.+.....+  ......+......+...++.+.+...+..............+..+...+...+
T Consensus       137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            3 67778888888888887754221  11223333334445667778888888887776532213566667777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          291 KIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      +++.+...+.......+.....+..+...+...+..+.+...+......
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888777766554445555555555666677777777777665

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.41  E-value=0.92  Score=43.16  Aligned_cols=100  Identities=11%  Similarity=0.094  Sum_probs=69.8

Q ss_pred             CCCHhhH-HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112          465 KPDMITY-SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS--AGKVEDALQLYSNMKKRNCVPNLVTY  541 (625)
Q Consensus       465 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~  541 (625)
                      .|+..++ +.++..+.+.|-..+|...+..+... ++|+...|..+++.-..  .-+..-+..+|+.+... +..|+..|
T Consensus       456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw  533 (568)
T KOG2396|consen  456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW  533 (568)
T ss_pred             CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence            3444443 45666677788888888888888776 46677777777654321  22367778888888766 33677888


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHH
Q 038112          542 NTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       542 ~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ......-...|..+.+-.++.++.+
T Consensus       534 ~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  534 MDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHHHhhccCCCcccccHHHHHHHH
Confidence            7777777788888888887777766

>PRK11906 transcriptional regulator; Provisional

Probab=96.34  E-value=0.36  Score=45.76  Aligned_cols=149  Identities=13%  Similarity=0.048  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHhC-CCCCC-hhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112          413 KLENAIFLFKEMSRK-GCSPT-VVSYNTLINGLCK---------VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS  481 (625)
Q Consensus       413 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  481 (625)
                      ..+.|..+|.+.... ...|+ ...|..+..++..         .....+|.++.++.++.+ +.|......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            457888899998822 22343 3456665554432         223456777888888764 45778888888888888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCChhHHH
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL---VTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~  558 (625)
                      ++++.|...|++....+ +....+|........-.|+.++|.+.+++..+.  .|..   .+....+..|+.. ..+.|+
T Consensus       352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhH
Confidence            88999999999999864 335677777788888899999999999998874  4542   2223333355544 567777


Q ss_pred             HHHHHHHH
Q 038112          559 EIWNHILE  566 (625)
Q Consensus       559 ~~~~~~~~  566 (625)
                      .+|-+-.+
T Consensus       428 ~~~~~~~~  435 (458)
T PRK11906        428 KLYYKETE  435 (458)
T ss_pred             HHHhhccc
Confidence            77654433

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.28  E-value=0.18  Score=40.24  Aligned_cols=140  Identities=14%  Similarity=0.083  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE-DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR  114 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  114 (625)
                      .+...|..-+. +++.+..++|+..|..+.+.|...-+ -..+..+......|+...|...|+.+-.. ...|....   
T Consensus        57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~r---  131 (221)
T COG4649          57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGR---  131 (221)
T ss_pred             cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhh---
Confidence            34455554443 44667777888888888777654322 23345556667777777777777776321 11111100   


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWE  194 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  194 (625)
                                         | .....-...+...|.++......+.+-..+-+.....-..|.-+-.+.|++..|...|.
T Consensus       132 -------------------d-~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~  191 (221)
T COG4649         132 -------------------D-LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV  191 (221)
T ss_pred             -------------------H-HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH
Confidence                               0 00111112234555555555555554443333333444445555556666666666666


Q ss_pred             HHHhCC
Q 038112          195 RLVMET  200 (625)
Q Consensus       195 ~~~~~~  200 (625)
                      .+....
T Consensus       192 qia~Da  197 (221)
T COG4649         192 QIANDA  197 (221)
T ss_pred             HHHccc
Confidence            665543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.19  E-value=1  Score=41.56  Aligned_cols=107  Identities=19%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 038112          402 NSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS  481 (625)
Q Consensus       402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  481 (625)
                      +..+.-+...|+...|.++-.+..    .|+...|...+.+++..++|++-..+...      +-++.-|...+.+|.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence            334455566677666666655543    35666777777777777777766654322      11346667777777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSN  528 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  528 (625)
                      |+..+|..+..++     ++     ..-+..|.+.|++.+|.+.--+
T Consensus       251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777666551     11     2345566677777777665433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.17  E-value=0.093  Score=40.42  Aligned_cols=29  Identities=14%  Similarity=0.205  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMK  530 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  530 (625)
                      |..++..++.++++.|+.+....+++..-
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W   29 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW   29 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence            35667778888888888888877776654

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.72  Score=39.35  Aligned_cols=209  Identities=13%  Similarity=0.099  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      |.....+|...+++++|...+.+..+.. +.+...|. -      ...+++|.-+.+++.+.  .--...+......|.+
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            4445566777778888877776665321 22222222 1      23345566666665543  1123445556667777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHH
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCN-----ADSTTHGVLINGLCKNGYLNK  363 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~  363 (625)
                      +|.++.|-..+++..+.               ...-++++|+++|.+....-..     .-...+....+.+.+...+++
T Consensus       104 ~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             hCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            77777776666665442               3445566666666655432100     011223334445555566655


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHH
Q 038112          364 AIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG---CSPTVVSYNTLI  440 (625)
Q Consensus       364 a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~  440 (625)
                      |-..+.+...           +......  ....-..+...|-.+....++..|.+.++.-.+.+   -+-+..+...|+
T Consensus       169 aa~a~lKe~~-----------~~~~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  169 AATAFLKEGV-----------AADKCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             HHHHHHHhhh-----------HHHHHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            5544432100           0001111  11112234555556666677778877777643321   122444556666


Q ss_pred             HHHhccCCHHHHHHHH
Q 038112          441 NGLCKVERFGEAYSFV  456 (625)
Q Consensus       441 ~~~~~~~~~~~a~~~~  456 (625)
                      .+| ..|+.+++..++
T Consensus       236 ~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHh-ccCCHHHHHHHH
Confidence            555 345666555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.08  E-value=1.1  Score=40.75  Aligned_cols=167  Identities=13%  Similarity=0.035  Sum_probs=96.8

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCCChhh
Q 038112          172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV---VTYNVMINGLCKCGRFDECLEMWDRMKKNE-----REKDSFT  243 (625)
Q Consensus       172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~  243 (625)
                      .|..+.+.+.+..++.+++.+-..-....+..|..   .....+..++...+.++++++.|+...+..     ......+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            45556666666666666666655555444333321   123345566666777888888877765421     1122345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVES----GIFV-----DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC----L--  308 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~--  308 (625)
                      +..+...|.+..|+++|.-...+..+.    ++..     .......+.-++-..|.+..|.+.-++..+...    .  
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            777777778888888777665554332    2220     012233445556667777777776666543321    1  


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWELLRE  338 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  338 (625)
                      .......+.+.|...|+.+.|+.-|+....
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            444556677788888888888777766543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.06  E-value=0.18  Score=47.76  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI   66 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   66 (625)
                      .+|+..+.+.|+.++|++.|+..++..+......+...++.+++..+.+.++..++.+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3444555555555555555555444331112233444445555555555555555554433

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.03  E-value=1.1  Score=40.61  Aligned_cols=130  Identities=15%  Similarity=0.160  Sum_probs=79.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCC-CH-----
Q 038112          402 NSLMNGFIQASKLENAIFLFKEMSRKG-----CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK--GWKP-DM-----  468 (625)
Q Consensus       402 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~-----  468 (625)
                      ..+..++...+.++++.+.|+...+..     ......++..+...|.+..++++|.-+..+..+.  .+.. |.     
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence            345666677777888888887766421     1112346777777888888888887766655432  1111 11     


Q ss_pred             -hhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          469 -ITYSLLINGLCQSKKIDMALKLCCQFLQ----KGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       469 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                       .....+.-++...|..-.|.+..++..+    .|-.+ .......++..|...|+.+.|+.-|+.+..
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence             1223344456677777777777776654    33222 133445667788888888888887776654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.29  Score=43.67  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=84.3

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH----HHHHHHHhcCC
Q 038112          181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC----SFIHGLCKAGN  256 (625)
Q Consensus       181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~  256 (625)
                      ...|+..+|-..|+++++.  +|.|..++...=.++.-.|+.+.-...++++...= .++...|.    .+.-++...|-
T Consensus       114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence            3456667777777777765  46666666666667777777777777776665320 12222221    22233445677


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHH
Q 038112          257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISI  332 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~  332 (625)
                      +++|++.-++..+.+.. |...-......+.-.|++.++.++..+-......    -..-|-...-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            77777777766665422 5555555666666667777776666554332211    111122233344455666666666


Q ss_pred             HHH
Q 038112          333 WEL  335 (625)
Q Consensus       333 ~~~  335 (625)
                      |+.
T Consensus       270 yD~  272 (491)
T KOG2610|consen  270 YDR  272 (491)
T ss_pred             HHH
Confidence            654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.73  Score=36.95  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=67.2

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-----HHHHHhc
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDV-YSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-----IDGFFKK  183 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~  183 (625)
                      +.+.+..++|+.-|..+.+.|...-+ .............|+...|...|+++-.-...|  .....+     .-.+...
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P--~~~rd~ARlraa~lLvD~  145 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP--QIGRDLARLRAAYLLVDN  145 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc--chhhHHHHHHHHHHHhcc
Confidence            44566667777777777666533222 122333344556777777777777766543222  222222     2234456


Q ss_pred             CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          184 GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK  234 (625)
Q Consensus       184 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  234 (625)
                      |.++......+.+...+ .+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus       146 gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         146 GSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            77776666666554433 223333445566666677777777777776654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.82  E-value=1.3  Score=39.41  Aligned_cols=199  Identities=22%  Similarity=0.150  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRK-GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN-  476 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-  476 (625)
                      .........+...+.+..+...+...... ........+......+...+.+..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            34444445555555666555555555431 112233344444555555555666666666665532221 111112222 


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCC
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGF--TPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP-NLVTYNTLMDGLFKTGD  553 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  553 (625)
                      .+...|+++.|...+.+......  ......+......+...++++.+...+...... .+. ....+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHccc
Confidence            45666667777766666644211  012333333334455666777777777776664 223 35566666666777777


Q ss_pred             hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          554 CDKALEIWNHILEERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       554 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++.|...+.....  ..|+ ...+..+...+...+..+++...+.+...
T Consensus       218 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777766  4443 33444444444455666777766666654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.70  E-value=0.8  Score=44.48  Aligned_cols=26  Identities=12%  Similarity=0.106  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038112          398 AYTCNSLMNGFIQASKLENAIFLFKE  423 (625)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~a~~~~~~  423 (625)
                      ...|..|.....+.|+++-|.+.|.+
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            33444444444444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.68  E-value=1.6  Score=39.70  Aligned_cols=101  Identities=10%  Similarity=-0.013  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          243 TYCSFIHGLCKAGNVE---GAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       243 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      ++..++.+|...+..+   +|..+++.+...... .+.++..-+..+.+.++.+.+.+.+..|..........+...+..
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~  164 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH  164 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence            3445556666555533   344455555433211 234444445555556777777777777766544233333333333


Q ss_pred             H---HhCCCHHHHHHHHHHHHHcCCCCCh
Q 038112          320 L---LENGKVDEAISIWELLREKNCNADS  345 (625)
Q Consensus       320 ~---~~~~~~~~a~~~~~~~~~~~~~~~~  345 (625)
                      +   .. .....+...+..+....+.|..
T Consensus       165 i~~l~~-~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  165 IKQLAE-KSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence            3   22 2234555555555544444443

It is also involved in sporulation [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.63  E-value=0.011  Score=33.11  Aligned_cols=32  Identities=3%  Similarity=0.093  Sum_probs=18.3

Q ss_pred             HHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHH
Q 038112           25 FDSATREPGYAHSPHLFHHILRRLIDPKLVVHVS   58 (625)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   58 (625)
                      |+.+++.+  |.++.+|..++.+|...|++++|+
T Consensus         2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34445545  566666666666666666665553

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.63  E-value=0.88  Score=36.25  Aligned_cols=124  Identities=10%  Similarity=0.142  Sum_probs=56.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG  552 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  552 (625)
                      .++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+....++.   .   .+.......++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            34444444455555555555555544 234455555555555432 2333333331   0   12222334555555555


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038112          553 DCDKALEIWNHILEERLRPDIISYNITLKGLCSC-SRMSDAFEFLNDALCRGILPTTITWHILVRAVM  619 (625)
Q Consensus       553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  619 (625)
                      -++++.-++.++-.         +...+..+... ++++.|.+++.+.      .++..|..++..+.
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            55555555554422         11122222222 5556666655542      24456665555543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.61  E-value=0.099  Score=42.20  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=75.7

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC----------ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK----------LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      |+.|.+.++.....+  |.++..+..=+.++....          -+++|..-|+.++..+| ...+.+..++.+|...+
T Consensus         7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHH
Confidence            466777777766667  888988877776665432          24556666777777764 47788888888887655


Q ss_pred             C----chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           88 M----PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        88 ~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .    ..+|...                    |++|...|+++...+  |+...|+.-+....      .|-++..++.+
T Consensus        84 ~l~~d~~~A~~~--------------------F~kA~~~FqkAv~~~--P~ne~Y~ksLe~~~------kap~lh~e~~~  135 (186)
T PF06552_consen   84 FLTPDTAEAEEY--------------------FEKATEYFQKAVDED--PNNELYRKSLEMAA------KAPELHMEIHK  135 (186)
T ss_dssp             HH---HHHHHHH--------------------HHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHH
T ss_pred             hhcCChHHHHHH--------------------HHHHHHHHHHHHhcC--CCcHHHHHHHHHHH------hhHHHHHHHHH
Confidence            3    2333333                    456778888888765  88888888777653      46667777766


Q ss_pred             CC
Q 038112          164 RG  165 (625)
Q Consensus       164 ~~  165 (625)
                      .+
T Consensus       136 ~~  137 (186)
T PF06552_consen  136 QG  137 (186)
T ss_dssp             SS
T ss_pred             HH
Confidence            54

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.36  E-value=1.6  Score=42.47  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=44.2

Q ss_pred             HHHhcCChhhHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038112          215 GLCKCGRFDECLEMWD--RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI  292 (625)
Q Consensus       215 ~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  292 (625)
                      ...-.++++++.++.+  ++. ..  ........++..+.+.|..+.|+++-.         |+.   .-.....+.|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll-~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLL-PN--IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhc-cc--CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence            3444556666555554  111 11  113335555555555666665555432         221   123344555666


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112          293 KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL  335 (625)
Q Consensus       293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  335 (625)
                      +.|.++.+...     +...|..|.......|+++-|.+.|.+
T Consensus       335 ~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  335 DIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            65555443321     445566666666666666666555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.30  E-value=0.26  Score=43.71  Aligned_cols=75  Identities=12%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE-----ERLRPDIISYN  577 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  577 (625)
                      ..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3445556666666666666666666666652 44566666666666666666666666666544     35555544443


Q ss_pred             H
Q 038112          578 I  578 (625)
Q Consensus       578 ~  578 (625)
                      .
T Consensus       232 ~  232 (280)
T COG3629         232 L  232 (280)
T ss_pred             H
Confidence            3

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.30  E-value=1.5  Score=36.78  Aligned_cols=181  Identities=12%  Similarity=0.018  Sum_probs=95.9

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      ..|-+.-|+--|.+.+... |.-+.+||.+.--+...|+++.|.+.|+...+.++.-+-...+. .-.+.--|++.-|.+
T Consensus        77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~  154 (297)
T COG4785          77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQD  154 (297)
T ss_pred             hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHH
Confidence            4455666666677766654 34466788888888889999999999999888755433222222 223345688888887


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHH-HHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHH
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMW-DRMKKNEREKDSFTYCSFI-HGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      -+.+.-+.+...|-...|..+..   +.-++.+|..-+ ++..    ..|..-|...+ ..|...=..+   .+++++..
T Consensus       155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a  224 (297)
T COG4785         155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERLKA  224 (297)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHHHh
Confidence            77776665433333333433332   234555555433 3333    23434443333 2222221112   22222222


Q ss_pred             CCCC------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          270 SGIF------VDAVTYNAMIDGFCRAGKIKECFELWEVMGR  304 (625)
Q Consensus       270 ~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  304 (625)
                      ..-.      .-+.+|..+...+...|+.++|..+|+-...
T Consensus       225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            1100      0124455555556666666666666655543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.16  E-value=0.31  Score=37.62  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112          134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI  213 (625)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  213 (625)
                      |..++..++.++++.|+.+....+++..-.-++.....           .+.          .....+..|+.....+++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~----------~~~~spl~Pt~~lL~AIv   59 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD----------YPPSSPLYPTSRLLIAIV   59 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc----------cCCCCCCCCCHHHHHHHH
Confidence            35667788888888888888888877654322111000           000          222333566666677777


Q ss_pred             HHHHhcCChhhHHHHHHHHHh-CCCCCChhhHHHHHHHHH
Q 038112          214 NGLCKCGRFDECLEMWDRMKK-NEREKDSFTYCSFIHGLC  252 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~  252 (625)
                      .+|+.+|++..|+++++.+.+ -+++.+..+|..|+.-..
T Consensus        60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            777777777777777766654 234445566666665443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.15  E-value=0.05  Score=30.37  Aligned_cols=31  Identities=42%  Similarity=0.754  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRPD  572 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  572 (625)
                      +|..++.+|...|++++|+..|+++++  +.|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            455666666666666666666666666  4443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=95.14  E-value=0.066  Score=47.60  Aligned_cols=90  Identities=11%  Similarity=-0.059  Sum_probs=48.7

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      ++-+.+||.|++|+.-|..++...  |+++..+...+.+|++..++..|+.-...++..+ ..-...|..-+.+-...|.
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence            445556666666666666666555  6666666666666666666666666666555543 1122233333333344444


Q ss_pred             chHHHHHHHHhHH
Q 038112           89 PDKALDVFQRMNE  101 (625)
Q Consensus        89 ~~~A~~~~~~~~~  101 (625)
                      .++|.+-++.++.
T Consensus       181 ~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  181 NMEAKKDCETVLA  193 (536)
T ss_pred             HHHHHHhHHHHHh
Confidence            4444444444433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.86  E-value=0.067  Score=29.80  Aligned_cols=27  Identities=22%  Similarity=0.505  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .+..++.++...|++++|++.|+++++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344555555556666666666555555

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.80  E-value=3.1  Score=37.89  Aligned_cols=129  Identities=15%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             hCCCHHHHHHHHHHHHHcCCCCChhh-------HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHH---Hh
Q 038112          322 ENGKVDEAISIWELLREKNCNADSTT-------HGVLINGLCKNG-YLNKAIQILNEVEEGGEGRLADAASLVNR---MD  390 (625)
Q Consensus       322 ~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~a~~~~~~---~~  390 (625)
                      +.|+.+.|..++.+........++..       +..++......+ +++.|..++++.           .++++.   +.
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~~   73 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKMD   73 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhcc
Confidence            45556666655555544321112222       222233344555 888888888743           333322   11


Q ss_pred             hCCCC---ccHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          391 KHGCK---LNAYTCNSLMNGFIQASKLE---NAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       391 ~~~~~---~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                      ..+..   .-..+...++.+|...+..+   +|..+++.+...... .+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus        74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            11111   12234566667777666544   444555555443221 2334444555555577777777777777764

It is also involved in sporulation [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.79  E-value=1.6  Score=34.68  Aligned_cols=40  Identities=8%  Similarity=0.042  Sum_probs=16.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038112          247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFC  287 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (625)
                      ++..+...+........++.+...+. .++...+.++..|+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~   52 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA   52 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence            33444444444444444444444332 23334444444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.79  E-value=0.051  Score=30.34  Aligned_cols=32  Identities=28%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 038112          299 WEVMGRKGCLNVVSYNILIRGLLENGKVDEAI  330 (625)
Q Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  330 (625)
                      |++..+..|.+..+|+.+...+...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45566667777778888888888777777765

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.75  E-value=0.14  Score=41.80  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHccCCchHHHHHHHHhHHh------hCCCcc
Q 038112           39 HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPED----VALSVIQAYGKNSMPDKALDVFQRMNEI------FGCEAG  108 (625)
Q Consensus        39 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~  108 (625)
                      .+...++..+...|++++|+..++..+...  .+..    +-..|++.....|.+++|...++.....      .....+
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD  167 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQT--KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence            334456677888899999999999888642  2222    3345778888899999999988876331      112234


Q ss_pred             hhhhcCChHHHHHHHHHHHHCC
Q 038112          109 ILCRKRQFEKAKRFLNSLWEKG  130 (625)
Q Consensus       109 ~~~~~~~~~~A~~~~~~~~~~~  130 (625)
                      ++...|+-++|+.-|++.+..+
T Consensus       168 ill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         168 ILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHcCchHHHHHHHHHHHHcc
Confidence            4888899999999999988875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.71  E-value=1  Score=37.08  Aligned_cols=97  Identities=20%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          474 LINGLCQSKKIDMALKLCCQFLQKGFTPD-----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       474 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      -..-+.+.|++++|..-|..+++.- ++.     ...|..-+.++.+.+.++.|+.-..+.++.+ +.....+..-+.+|
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeay  178 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAY  178 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHH
Confidence            3556677888888888888888752 222     2345555567778888888888888887753 22344555556778


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCHH
Q 038112          549 FKTGDCDKALEIWNHILEERLRPDII  574 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p~~~  574 (625)
                      .+...+++|+.-|+++++  ..|...
T Consensus       179 ek~ek~eealeDyKki~E--~dPs~~  202 (271)
T KOG4234|consen  179 EKMEKYEEALEDYKKILE--SDPSRR  202 (271)
T ss_pred             HhhhhHHHHHHHHHHHHH--hCcchH
Confidence            888888888888888888  566543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.65  E-value=7.7  Score=41.71  Aligned_cols=54  Identities=17%  Similarity=0.213  Sum_probs=27.8

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKRNCVPNLV--TYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +.+|..+|+|.+|..+..++...   .+..  +-..|+.-+...++.-+|-++..+...
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            34555566666666655554421   1211  124455556666666666666555543

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.60  E-value=6.5  Score=40.66  Aligned_cols=326  Identities=9%  Similarity=0.013  Sum_probs=152.3

Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCH
Q 038112          214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA-VTYNAMIDGFCRAGKI  292 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  292 (625)
                      .-..+.|++..+.++...+..... ..-..|..+... .....+++....++   +..-.|-. ..-......+.+.+++
T Consensus        41 ~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w  115 (644)
T PRK11619         41 KQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDW  115 (644)
T ss_pred             HHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCH
Confidence            345567778877777766642211 111112221111 11223443333333   22112222 2223334445566666


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          293 KECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  372 (625)
                      ...+.++    ...|.+.........+....|+.++|....+.+-..|.. .+.....++..+.+.|.+....-.-+-..
T Consensus       116 ~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~  190 (644)
T PRK11619        116 RGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRL  190 (644)
T ss_pred             HHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            6665522    122446666666777777888877777666666555433 45566677777766665444332111111


Q ss_pred             hcCCCchHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCH
Q 038112          373 EGGEGRLADAASLVNRMDKHGCKLN-AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC--KVERF  449 (625)
Q Consensus       373 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~  449 (625)
                      ....++...+..+...+     +++ ......++..+.   +...+...+..     +.++...-..++.++.  ...+.
T Consensus       191 al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~  257 (644)
T PRK11619        191 AMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQN---DPNTVETFART-----TGPTDFTRQMAAVAFASVARQDA  257 (644)
T ss_pred             HHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHH---CHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCH
Confidence            11123333333332222     111 111112222111   12222221111     1122211111111221  23456


Q ss_pred             HHHHHHHHHHHHCC-CCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 038112          450 GEAYSFVKEMLEKG-WKPDM--ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLY  526 (625)
Q Consensus       450 ~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  526 (625)
                      +.|..++....... +.+..  .....+.......+..+++...++......  .+......-+......++++.+...+
T Consensus       258 ~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i  335 (644)
T PRK11619        258 ENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWL  335 (644)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHH
Confidence            77777777764432 22221  122333333333322456666666544321  23444444455555788888888777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          527 SNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       527 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      ..|... ......-..-+++++...|+.++|..+|+++.
T Consensus       336 ~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a  373 (644)
T PRK11619        336 ARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM  373 (644)
T ss_pred             HhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            777553 23345556677788777888888888888874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.55  E-value=0.087  Score=29.90  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=14.8

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHH
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      +..|+..|.+.|++++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666644

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.54  E-value=1.6  Score=33.32  Aligned_cols=66  Identities=20%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL  569 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  569 (625)
                      .......+..+...|+-++-.+++..+.+. -.+++.....++.+|.+.|+..++.++++++.++|+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            444455556666777777777777776653 356677777777777777777777777777777664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.39  E-value=6.3  Score=42.28  Aligned_cols=271  Identities=13%  Similarity=0.093  Sum_probs=131.1

Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHH
Q 038112           20 TALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQ   97 (625)
Q Consensus        20 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   97 (625)
                      ......+.++...  +++ .-...++.++.+.+  ..+.+++.........  ....+-..+=.++.    .-.+-.+|+
T Consensus       775 ~vc~~vr~~l~~~--~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~--~~~~ad~al~hll~----Lvdvn~lfn  845 (1265)
T KOG1920|consen  775 SVCDAVRNALERR--APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQ--VAVSADEALKHLLF----LVDVNELFN  845 (1265)
T ss_pred             HHHHHHHHHHhhc--Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHh----hccHHHHHH
Confidence            3344444444433  333 44455666776665  5666666555555411  11111111111111    111223333


Q ss_pred             HhHHhhCCCcch---hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhH
Q 038112           98 RMNEIFGCEAGI---LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYN  174 (625)
Q Consensus        98 ~~~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  174 (625)
                      .++..+......   ...+.|+.+-+.+++++...  +++..-|.  |..  ..++++.|+.-+..+-       ...|.
T Consensus       846 ~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~  912 (1265)
T KOG1920|consen  846 SALGTYDLDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFP  912 (1265)
T ss_pred             hhhcccchHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccH
Confidence            332222211111   23466777777777776632  22222221  111  2355666655554432       22344


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038112          175 ILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA  254 (625)
Q Consensus       175 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  254 (625)
                      ...+.-.+.|.+++|..++..-.+     .-...|......+...+.+++|.-.|+..-+         ....+.+|...
T Consensus       913 e~~n~I~kh~Ly~~aL~ly~~~~e-----~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~  978 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALYKPDSE-----KQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKEC  978 (1265)
T ss_pred             HHHHHHHhcccchhhhheeccCHH-----HHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHh
Confidence            444455566777777766432111     1122344445555566777777766665431         12245667777


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112          255 GNVEGAERVYREMVESGIFVDAV--TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI  332 (625)
Q Consensus       255 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  332 (625)
                      |+|.+|+.+..++...   .+..  +-..|+.-+...+++-+|-++..+....   ...+    +..+++...+++|+++
T Consensus       979 ~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~a----v~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen  979 GDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEEA----VALLCKAKEWEEALRV 1048 (1265)
T ss_pred             ccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHHH----HHHHhhHhHHHHHHHH
Confidence            8888888777766432   1211  2245666667777777777777665543   2222    3334444456666665


Q ss_pred             HHHH
Q 038112          333 WELL  336 (625)
Q Consensus       333 ~~~~  336 (625)
                      ....
T Consensus      1049 a~~~ 1052 (1265)
T KOG1920|consen 1049 ASKA 1052 (1265)
T ss_pred             HHhc
Confidence            5443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.38  E-value=4.8  Score=38.27  Aligned_cols=113  Identities=10%  Similarity=-0.030  Sum_probs=62.5

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112           15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD   94 (625)
Q Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   94 (625)
                      .|+...|-+-...+++..  |.+|.............|.|+++...+..+.+.- .....+...+++...+.|++++|..
T Consensus       302 ~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-GTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             ccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-cCCchHHHHHHHhhhchhhHHHHHH
Confidence            456655555555455444  5555555555555566677777776666655542 2334455566666667777777777


Q ss_pred             HHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112           95 VFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG  130 (625)
Q Consensus        95 ~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~  130 (625)
                      .-+.++...-..+.+       ....|-++++.-.+.++...+
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            666665433222322       223445556666666555444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.29  E-value=7.8  Score=40.29  Aligned_cols=224  Identities=10%  Similarity=-0.005  Sum_probs=103.5

Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcch----------------hhhcCChHHHHHHHHHHHHCC----CCCCHhH
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----------------LCRKRQFEKAKRFLNSLWEKG----LKPDVYS  137 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~~~~~A~~~~~~~~~~~----~~~~~~~  137 (625)
                      .-+-......++.+|..+..++....+.....                ....|+++.|.++.+..+..-    ..+....
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~  499 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA  499 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence            34445566777888877777775543331000                445677777777777766542    1123444


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-----HHHHHhcCChhHHH--HHHHHHHhCCC--CCCC---
Q 038112          138 YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-----IDGFFKKGDYMRAK--EIWERLVMETS--VYPN---  205 (625)
Q Consensus       138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~--~~~~~~~~~~~--~~~~---  205 (625)
                      +..+..+..-.|+++.|..+..+..+..-..++..+...     ...+..+|+...+.  ..|........  .+..   
T Consensus       500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~  579 (894)
T COG2909         500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL  579 (894)
T ss_pred             hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence            555556666677777777777666554222233322222     23345566332222  22222222110  0011   


Q ss_pred             cchHHHHHHHHHh-cCChhhHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHH
Q 038112          206 VVTYNVMINGLCK-CGRFDECLEMWDRMKKNEREKDSFT--YCSFIHGLCKAGNVEGAERVYREMVESGI----FVDAVT  278 (625)
Q Consensus       206 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~  278 (625)
                      ......+..++.+ .+...++..-++......+.|-...  +..++......|+.++|...+.++.....    .++..+
T Consensus       580 ~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a  659 (894)
T COG2909         580 VRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA  659 (894)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence            1122223333333 1111222222222222222222222  22566677777888888777777654321    122222


Q ss_pred             HHHH--HHHHHhcCCHHHHHHHHHH
Q 038112          279 YNAM--IDGFCRAGKIKECFELWEV  301 (625)
Q Consensus       279 ~~~l--~~~~~~~~~~~~a~~~~~~  301 (625)
                      ....  +......|+.+.+.....+
T Consensus       660 ~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         660 AAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHhhHHHhcccCCHHHHHHHHHh
Confidence            1112  2223455777666666555

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.27  E-value=0.8  Score=38.07  Aligned_cols=97  Identities=18%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHH--H
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYN--I  578 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~  578 (625)
                      ..+..++..|.+.|+.+.|.+.|.++.+....+.  ...+..+++.....|++..+...+.++...--.+ |...-+  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4566777778888888888888888776533333  4455677777777888888877777766521111 122111  1


Q ss_pred             HHH--HHhhcCChHHHHHHHHHHH
Q 038112          579 TLK--GLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       579 l~~--~~~~~g~~~~A~~~~~~~~  600 (625)
                      +..  .+...+++.+|.+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            222  3445688888887777664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.17  E-value=1.6  Score=34.89  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=19.9

Q ss_pred             HccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHH
Q 038112           84 GKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWE  128 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~  128 (625)
                      .+.++.+++..+++-+.-..|..+.+       +..+|+|.+|+.+|+.+..
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            34445555555555443333333333       3344444444444444433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.14  E-value=0.15  Score=28.33  Aligned_cols=29  Identities=3%  Similarity=-0.197  Sum_probs=13.8

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      ++..++.++...|++++|.+.|+++++..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            34444555555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.09  E-value=0.76  Score=40.90  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 038112          276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHGV  350 (625)
Q Consensus       276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  350 (625)
                      ..++..++..+...|+++.+.+.++.+....|.+...|..++.+|...|+...|+..|+.+.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345666778888889999999999999999888999999999999999999999998888765     477777666554


Q ss_pred             HHHH
Q 038112          351 LING  354 (625)
Q Consensus       351 l~~~  354 (625)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.04  E-value=1.7  Score=35.84  Aligned_cols=93  Identities=17%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN  323 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  323 (625)
                      ..-+...|++++|..-|...+...+...    ...|..-..++.+.+.++.|++-.......+|....+...-+.+|-+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            3456677888888888888777633222    223444455666777777777777777777777666666667777777


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 038112          324 GKVDEAISIWELLREKN  340 (625)
Q Consensus       324 ~~~~~a~~~~~~~~~~~  340 (625)
                      ..+++|+.-|.++.+..
T Consensus       182 ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESD  198 (271)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            77777777777777763

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.98  E-value=16  Score=42.76  Aligned_cols=152  Identities=11%  Similarity=0.102  Sum_probs=100.7

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          211 VMINGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       211 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      .+..+-.+.+.+.+|+-.+++-.....  ......+..+...|...++++...-+......     +.. +..-+.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence            455677788999999999988421111  11222344445589999999888777664111     222 2333445677


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHH
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGV-LINGLCKNGYLNKAIQI  367 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~  367 (625)
                      .|++..|...|+.+.+.+++....++.++......|.++..+-..+...... .+....++. -..+-.+.++++.....
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            8999999999999999999988889988888888888888887666655542 223333333 23444677777766665


Q ss_pred             HH
Q 038112          368 LN  369 (625)
Q Consensus       368 ~~  369 (625)
                      +.
T Consensus      1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred             hh
Confidence            43

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.96  E-value=16  Score=42.75  Aligned_cols=310  Identities=13%  Similarity=0.050  Sum_probs=171.3

Q ss_pred             HHHHHhhCCCChhHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCC---CcchhhhcCC
Q 038112           43 HILRRLIDPKLVVHVSRILELI----EIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGC---EAGILCRKRQ  115 (625)
Q Consensus        43 ~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~  115 (625)
                      .++.+-.+.+.+..|...+++-    .+.+  .....+..+-..|+..+++|....+...-.. .++   ........|+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DPSLYQQILEHEASGN 1464 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-CccHHHHHHHHHhhcc
Confidence            5666777889999999999983    2222  1233445555599999999999988874211 111   1122667899


Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHH-HHHHHhcCChhHHHHHHH
Q 038112          116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNIL-IDGFFKKGDYMRAKEIWE  194 (625)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~  194 (625)
                      +..|...|+++.+.+ ++....++.++......+.++..+...+-..... .+....++.+ ..+.-+.++++.......
T Consensus      1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            999999999999987 4557778888888888888888888776665552 2233333332 333456677776665443


Q ss_pred             HHHhCCCCCCCcchHHHH--HHHHHhcCChh--hHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHhcCCHHHHH
Q 038112          195 RLVMETSVYPNVVTYNVM--INGLCKCGRFD--ECLEMWDRMKKNEREK---------DSFTYCSFIHGLCKAGNVEGAE  261 (625)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~  261 (625)
                         .     .+...|...  +....+...-+  .-.+.++.+.+.-+.|         -...|..++..+.-.    +-.
T Consensus      1543 ---~-----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~ 1610 (2382)
T KOG0890|consen 1543 ---D-----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELE 1610 (2382)
T ss_pred             ---c-----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHH
Confidence               1     233344333  33333332222  1122333332211110         011222222221111    111


Q ss_pred             HHHHHHHHCCCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHH----HHhc---CCCcHHHHHHHHHHHHhCCCHHH
Q 038112          262 RVYREMVESGIFV------DAVTYNAMIDGFCRAGKIKECFELWEV----MGRK---GCLNVVSYNILIRGLLENGKVDE  328 (625)
Q Consensus       262 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~---~~~~~~~~~~l~~~~~~~~~~~~  328 (625)
                      ...+...  +..+      +..-|...+..-....+..+-+--+++    ....   +..-..+|...++...+.|+++.
T Consensus      1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred             HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence            1111111  1111      122232222221111112221111111    1111   22367889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          329 AISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEG  374 (625)
Q Consensus       329 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  374 (625)
                      |...+-...+.+   -+..+...+......|+-..|..++++..+.
T Consensus      1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            988776666654   3445556677888999999999999876644

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.96  E-value=0.15  Score=28.35  Aligned_cols=29  Identities=0%  Similarity=-0.196  Sum_probs=15.4

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      +|..++.++...|++++|+..|+++++.+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            44555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.93  E-value=0.097  Score=28.84  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=16.8

Q ss_pred             HHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112           76 ALSVIQAYGKNSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        76 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  104 (625)
                      +..++.++.+.|++++|...|+++...+|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            34555555566666666666666655554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.78  E-value=0.55  Score=38.13  Aligned_cols=60  Identities=22%  Similarity=0.226  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038112          520 EDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTG-----------DCDKALEIWNHILEERLRPDIISYNITLKGL  583 (625)
Q Consensus       520 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  583 (625)
                      ++|+.-|++++.  +.|+ ..++..++.++...+           .+++|...|+++.+  .+|+...|+.-+...
T Consensus        52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence            344444444444  3344 456666666655432           24555556666666  677777777666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=93.73  E-value=9.8  Score=39.46  Aligned_cols=94  Identities=13%  Similarity=0.016  Sum_probs=54.0

Q ss_pred             HHHHHHH-ccCChhHHHHHHHhhccCCCCCCCH----HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHH-HH
Q 038112            7 RLLNLLK-AEKNPHTALALFDSATREPGYAHSP----HLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVA-LS   78 (625)
Q Consensus         7 ~l~~~l~-~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~-~~   78 (625)
                      +++++|. ...++++|..++.++......+.-.    ..-..++..+.+.+... |.+.++..+..--.  .....+ ..
T Consensus        64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~fr  142 (608)
T PF10345_consen   64 RLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFR  142 (608)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHH
Confidence            5677775 7788999999999876543221111    11233455555555544 88888887764311  112211 22


Q ss_pred             HH--HHHHccCCchHHHHHHHHhHH
Q 038112           79 VI--QAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        79 l~--~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      ++  ..+...+++..|.+.++.+..
T Consensus       143 ll~~~l~~~~~d~~~Al~~L~~~~~  167 (608)
T PF10345_consen  143 LLKIQLALQHKDYNAALENLQSIAQ  167 (608)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH
Confidence            22  222233788888888887754

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.64  E-value=9.3  Score=38.93  Aligned_cols=143  Identities=11%  Similarity=0.051  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHhCCCCCCCcchHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCChhhHHHHHHHHHh
Q 038112          186 YMRAKEIWERLVMETSVYPNVVTYNVMING-----LCKCGRFDECLEMWDRMKK-------NEREKDSFTYCSFIHGLCK  253 (625)
Q Consensus       186 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~  253 (625)
                      ...+.+.++...+.+    +......++.+     +....|.+.|+.+|+....       .+   .+.....+..+|.+
T Consensus       228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence            456888888877765    33333333322     3456788999999888865       33   34456667777776


Q ss_pred             cC-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh---
Q 038112          254 AG-----NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---GKIKECFELWEVMGRKGCLNVVSYNILIRGLLE---  322 (625)
Q Consensus       254 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---  322 (625)
                      ..     +.+.|..++....+.|.+ +...  .+...+...   .+...|.++|......+..  .++..+..+|..   
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~--~A~~~la~~y~~G~g  375 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELGNP-DAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHI--LAIYRLALCYELGLG  375 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcCCc-hHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhCCC
Confidence            43     667799999888887633 4333  333333332   4578899999988877644  334444443332   


Q ss_pred             -CCCHHHHHHHHHHHHHcC
Q 038112          323 -NGKVDEAISIWELLREKN  340 (625)
Q Consensus       323 -~~~~~~a~~~~~~~~~~~  340 (625)
                       ..+...|..++.+..+.|
T Consensus       376 v~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  376 VERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             cCCCHHHHHHHHHHHHHcc
Confidence             346788888888888886

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.60  E-value=10  Score=39.25  Aligned_cols=59  Identities=15%  Similarity=-0.018  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELL  336 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  336 (625)
                      .....++.....++++.+...+..|............-+..++...|+.++|...|+.+
T Consensus       314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33334444445566666655555554433334444555555555566666666666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.49  E-value=7  Score=37.03  Aligned_cols=121  Identities=13%  Similarity=0.080  Sum_probs=79.2

Q ss_pred             CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhh-------hcCChHHHHHHHHHHHHCCCCCCHhHHHH-
Q 038112           69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC-------RKRQFEKAKRFLNSLWEKGLKPDVYSYGT-  140 (625)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-  140 (625)
                      .|-..+++..+...+..+|+.+.|.++.++++-..........       ..|..   +      +.-...-|...|.+ 
T Consensus        36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---r------L~~~~~eNR~fflal  106 (360)
T PF04910_consen   36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---R------LDYRRPENRQFFLAL  106 (360)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---c------cCCccccchHHHHHH
Confidence            3568889999999999999999999999887542221111000       00000   0      00011123333333 


Q ss_pred             --HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHH-hcCChhHHHHHHHHHHh
Q 038112          141 --VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF-KKGDYMRAKEIWERLVM  198 (625)
Q Consensus       141 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~  198 (625)
                        .+..+.+.|.+..|+++.+-+...++.-|+......+..|+ +.++++--+++++....
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence              35667889999999999999999877667777777777664 67888888888877654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.32  E-value=7.7  Score=36.97  Aligned_cols=116  Identities=14%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-------
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP---DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP-------  536 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------  536 (625)
                      ...++..++..+.+.|.++.|...+..+...+...   .+.+...-+......|+..+|+..++.........       
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            34566677777778888888877777776632111   23344444556667777777777777666511110       


Q ss_pred             -------------------C-------HHHHHHHHHHHHcc------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 038112          537 -------------------N-------LVTYNTLMDGLFKT------GDCDKALEIWNHILEERLRPDI-ISYNITLKGL  583 (625)
Q Consensus       537 -------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~  583 (625)
                                         +       ...+..++.-+...      +..+++...|.++.+  +.|+. ..|..+...+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWALFN  302 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHHHH
Confidence                               0       12233334444444      777888888888888  66633 4555555443


Q ss_pred             h
Q 038112          584 C  584 (625)
Q Consensus       584 ~  584 (625)
                      .
T Consensus       303 ~  303 (352)
T PF02259_consen  303 D  303 (352)
T ss_pred             H
Confidence            3

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.26  E-value=4.8  Score=34.41  Aligned_cols=57  Identities=18%  Similarity=0.181  Sum_probs=29.0

Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCCHHHH------HHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          513 LCSAGKVEDALQLYSNMKKRNCVPNLVTY------NTLMDGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                      -...+++.+|+++|++........+..-|      ..-+-++....|.-.+...+++..+  +.|
T Consensus       164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP  226 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDP  226 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCC
Confidence            34556677777777776654333222212      1222233333555555666666665  555

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.10  E-value=0.24  Score=28.03  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          575 SYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       575 ~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      ++..+...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999965

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.08  E-value=1.1  Score=39.22  Aligned_cols=88  Identities=15%  Similarity=0.116  Sum_probs=55.6

Q ss_pred             CCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh----------------hHHH
Q 038112          500 TPDVTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC----------------DKAL  558 (625)
Q Consensus       500 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------------~~A~  558 (625)
                      .-|..+|...+..+..     .+..+-....++.|.+.|+..|..+|+.|+..+-+..-.                +=++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            4467777777776653     356666777788888888888999999888876553211                1244


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 038112          559 EIWNHILEERLRPDIISYNITLKGLCSCS  587 (625)
Q Consensus       559 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  587 (625)
                      +++++|...|+-||.++-..++.++.+.+
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            55555555555555555555555554433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=93.08  E-value=1.2  Score=37.15  Aligned_cols=80  Identities=11%  Similarity=0.026  Sum_probs=55.9

Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCh
Q 038112          513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEE---RLRPDIISYNITLKGLCSCSRM  589 (625)
Q Consensus       513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~  589 (625)
                      +.+.|+ +.|.+.|-.+...+.-.++.....|+..|. ..|.++++.++.++++.   +-.+|++.+..|+..+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            344454 577777777777655556666667766665 45778888888888772   2356778888888888888888


Q ss_pred             HHHHH
Q 038112          590 SDAFE  594 (625)
Q Consensus       590 ~~A~~  594 (625)
                      +.|.-
T Consensus       195 e~AYi  199 (203)
T PF11207_consen  195 EQAYI  199 (203)
T ss_pred             hhhhh
Confidence            87753

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.06  E-value=3  Score=32.82  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKG  130 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~  130 (625)
                      ..++++++..+++.+.-..|..+.+       +...|++.+|..+|+.+.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            3555666666655554444444443       455555566665555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.92  E-value=4.7  Score=33.42  Aligned_cols=92  Identities=16%  Similarity=0.068  Sum_probs=48.3

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS  587 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  587 (625)
                      ...+...|++++|..-++.........+  ..+--.|++.....|.+++|+..++...+.+.  .......-.+++...|
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg  173 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence            4455666666666666665554311111  12223455556666666666666655544221  1222333445666666


Q ss_pred             ChHHHHHHHHHHHHCC
Q 038112          588 RMSDAFEFLNDALCRG  603 (625)
Q Consensus       588 ~~~~A~~~~~~~~~~~  603 (625)
                      +.++|+.-|++.++.+
T Consensus       174 ~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         174 DKQEARAAYEKALESD  189 (207)
T ss_pred             chHHHHHHHHHHHHcc
Confidence            6666666666666543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.81  E-value=0.19  Score=27.96  Aligned_cols=27  Identities=33%  Similarity=0.448  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +|..++..|...|++++|...|+++++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455566666666666666666666655

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.52  E-value=0.85  Score=40.96  Aligned_cols=95  Identities=12%  Similarity=-0.005  Sum_probs=58.8

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112          475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC  554 (625)
Q Consensus       475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  554 (625)
                      ...|.+.|.+++|+.+|...+... +.++.++..-+.+|.+...+..|..-...++..+ ..-...|..-+.+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            556777777777777777766642 2266666666777777777777766666655531 11133444445555556666


Q ss_pred             hHHHHHHHHHHHcCCCCCH
Q 038112          555 DKALEIWNHILEERLRPDI  573 (625)
Q Consensus       555 ~~A~~~~~~~~~~~~~p~~  573 (625)
                      .+|.+-++.+++  +.|+.
T Consensus       182 ~EAKkD~E~vL~--LEP~~  198 (536)
T KOG4648|consen  182 MEAKKDCETVLA--LEPKN  198 (536)
T ss_pred             HHHHHhHHHHHh--hCccc
Confidence            777777777776  66653

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.45  E-value=4.8  Score=32.34  Aligned_cols=54  Identities=19%  Similarity=0.069  Sum_probs=35.3

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPDVT-MYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      .-.+.++.+.+..++..+.-.  .|... .-..-+..+...|+|.+|..+|+.+...
T Consensus        19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            335667788888888777664  34332 2223345567788888888888887664

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=92.15  E-value=6.4  Score=36.73  Aligned_cols=83  Identities=12%  Similarity=0.003  Sum_probs=58.3

Q ss_pred             HHHhhccCCCCCCCHHHHHHHHHHhhCCC---C---------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112           24 LFDSATREPGYAHSPHLFHHILRRLIDPK---L---------VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK   91 (625)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (625)
                      -|+..++.+  |.+..+|..++..--..-   .         .+.-+.+|+++++.++ .+..++..++..+.+..+.+.
T Consensus         7 el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~   83 (321)
T PF08424_consen    7 ELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEK   83 (321)
T ss_pred             HHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHH
Confidence            455556656  888888888886433221   1         3445678888888864 678888888888888888888


Q ss_pred             HHHHHHHhHHhhCCCcch
Q 038112           92 ALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        92 A~~~~~~~~~~~~~~~~~  109 (625)
                      ..+.++++...++..+.+
T Consensus        84 l~~~we~~l~~~~~~~~L  101 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPEL  101 (321)
T ss_pred             HHHHHHHHHHHCCCChHH
Confidence            888888887766655544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.96  E-value=0.0045  Score=49.77  Aligned_cols=53  Identities=8%  Similarity=0.128  Sum_probs=26.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 038112          475 INGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYS  527 (625)
Q Consensus       475 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  527 (625)
                      +..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            33444445555555555555544333445555555666655555555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=91.90  E-value=4.6  Score=30.94  Aligned_cols=31  Identities=10%  Similarity=0.157  Sum_probs=12.0

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      ++.....++.+|.+.|+..++.+++.++-+.
T Consensus       119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen  119 NPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            3333334444444444444444444444433

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.78  E-value=12  Score=35.58  Aligned_cols=53  Identities=17%  Similarity=0.177  Sum_probs=30.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR  304 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  304 (625)
                      +.+.-+.|+++...+........  .++...+..+..  ...++++++...++.+..
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~--l~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLA--LRQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHH--HhCccHHHHHHHHHHHHH
Confidence            45667788888854444443322  123333333332  277888888887776654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=91.69  E-value=2.3  Score=37.24  Aligned_cols=98  Identities=11%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             CCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------CHHHHH
Q 038112          465 KPDMITYSLLINGLCQ-----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG----------------KVEDAL  523 (625)
Q Consensus       465 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~  523 (625)
                      +-|..+|...+..+..     .+..+=-...++.|.+.|+.-|..+|+.|+..+-+..                +-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            4466677777766643     3456666667788888999999999999999987653                234578


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          524 QLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      +++++|...|+.||..+-..|+.++.   +..-...-+.+|+
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FG---r~~~p~~K~~Rm~  182 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFG---RWNFPTKKVKRML  182 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhc---cccccHHHHHHHH
Confidence            99999999999999999888888774   5556665555554

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.64  E-value=23  Score=38.37  Aligned_cols=105  Identities=11%  Similarity=0.062  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccC-CCCCCCHHHHHHHHHHhh----CCCC---hhHHHHHHHHHHHhcCCCCHH
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATRE-PGYAHSPHLFHHILRRLI----DPKL---VVHVSRILELIEIQKCYCPED   74 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~---~~~a~~~~~~~~~~~~~~~~~   74 (625)
                      |+|=.+.+.+...+.|++|+..|+++... +|.....++-...+-+++    ..|+   +.+|+.-|+.+-..  +.-+-
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  553 (932)
T PRK13184        476 VSCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPL  553 (932)
T ss_pred             eecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCch
Confidence            45555668888889999999999987754 344444444444444333    3344   55555555555432  22334


Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           75 VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      -|..-+-.|-+.|++++=++.+.-+.+.++..|..
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            45555667899999999999999999999998887

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.46  E-value=2.1  Score=35.66  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI--ISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ...+..++..|.+.|+.+.|.+.|.++.+....|..  ..+..+++...-.|++..+...++++..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456789999999999999999999999996555543  5678888999999999999999998864

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.38  E-value=6.9  Score=31.93  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=74.9

Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112          121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET  200 (625)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  200 (625)
                      ++++.+...+++|+...+..++..+.+.|++....    .+...++-+|+......+-.+.  +.+..+.++--.|.++-
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh
Confidence            44555566778888888888888888888755443    3444555556554443332222  23344444433443321


Q ss_pred             CCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          201 SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                           ...+..+++.+...|++-+|+++.+....    .+......++.+....+|...-..+++-..+
T Consensus        89 -----~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   89 -----GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             -----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 11455667778888888888888776532    1222233455555556665555555544444

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.07  E-value=2.6  Score=41.28  Aligned_cols=100  Identities=13%  Similarity=-0.020  Sum_probs=68.6

Q ss_pred             hCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHH
Q 038112           49 IDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWE  128 (625)
Q Consensus        49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  128 (625)
                      .+.|+++.|.++..+..      +..-|..|+++..+.+++..|.+.|.+. ..++....++...|+-+.-..+-....+
T Consensus       648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d~~~LlLl~t~~g~~~~l~~la~~~~~  720 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA-RDLGSLLLLYTSSGNAEGLAVLASLAKK  720 (794)
T ss_pred             hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh-cchhhhhhhhhhcCChhHHHHHHHHHHh
Confidence            45688888877654433      4667888898888999999999998887 4455555556667776655555555555


Q ss_pred             CCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112          129 KGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus       129 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      .| +.     |...-++...|++++.++++..-
T Consensus       721 ~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  721 QG-KN-----NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             hc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence            55 22     33334566789999888887654

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.92  E-value=9.7  Score=32.80  Aligned_cols=93  Identities=14%  Similarity=-0.031  Sum_probs=60.6

Q ss_pred             HHHHHHHHccCC-------hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHH
Q 038112            6 KRLLNLLKAEKN-------PHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALS   78 (625)
Q Consensus         6 ~~l~~~l~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   78 (625)
                      +.++.-+..+|+       ++.|+.-|-+++..+  |..+.-|..-+..+++..+++.+..--..+++..+ ...-..+.
T Consensus         7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~f   83 (284)
T KOG4642|consen    7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYF   83 (284)
T ss_pred             chHHHHHHhccccccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHH
Confidence            444555554443       677777777777666  66666666677777777777777777777776542 23445556


Q ss_pred             HHHHHHccCCchHHHHHHHHhHH
Q 038112           79 VIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        79 l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      ++..+.....+++|+.++.+...
T Consensus        84 lg~~~l~s~~~~eaI~~Lqra~s  106 (284)
T KOG4642|consen   84 LGQWLLQSKGYDEAIKVLQRAYS  106 (284)
T ss_pred             HHHHHHhhccccHHHHHHHHHHH
Confidence            66777777777777777776633

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.88  E-value=4.6  Score=39.72  Aligned_cols=132  Identities=13%  Similarity=0.134  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 038112           73 EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL  152 (625)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  152 (625)
                      ......+++.+.++|..++|+++-..-    .....+..+.|+++.|.++..+.      .+..-|..|..+....+++.
T Consensus       614 k~~rt~va~Fle~~g~~e~AL~~s~D~----d~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~  683 (794)
T KOG0276|consen  614 KEIRTKVAHFLESQGMKEQALELSTDP----DQRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELP  683 (794)
T ss_pred             hhhhhhHHhHhhhccchHhhhhcCCCh----hhhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccch
Confidence            345556666666777666666553221    11122234555566555554433      23445666666666666666


Q ss_pred             hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 038112          153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD  230 (625)
Q Consensus       153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  230 (625)
                      .|.+.|....+.         ..|+-.+...|+.+....+-....+.+       ..|....+|...|+++++.+++.
T Consensus       684 lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  684 LASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQG-------KNNLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             hHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhc-------ccchHHHHHHHcCCHHHHHHHHH
Confidence            666666554432         234444445555544333333333322       11122234455566666655554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.85  E-value=6.8  Score=30.93  Aligned_cols=54  Identities=15%  Similarity=-0.026  Sum_probs=36.6

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      ...++++++..++..+.-..|.....-..-...+...|++++|.++|+.+.+.+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            346777777777777776666655555555556677777777777777777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=90.69  E-value=1.7  Score=31.11  Aligned_cols=73  Identities=7%  Similarity=-0.007  Sum_probs=50.1

Q ss_pred             HHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHccCCchHHHHHH
Q 038112           22 LALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC-PEDVALSVIQAYGKNSMPDKALDVF   96 (625)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~   96 (625)
                      +..++..+..+  |.+..+-..++..+...|++++|.+.+-.+++.+... +......++.++.-.|.-+....-+
T Consensus         8 ~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~   81 (90)
T PF14561_consen    8 IAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY   81 (90)
T ss_dssp             HHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence            34455556666  8899999999999999999999999999999886443 3456667777777667654443333

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.53  E-value=0.36  Score=26.43  Aligned_cols=29  Identities=3%  Similarity=-0.124  Sum_probs=20.5

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      ++..++.++.+.|++++|.+.|+.+++..
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            45566667777777777777777777765

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.45  E-value=0.028  Score=45.15  Aligned_cols=130  Identities=12%  Similarity=0.208  Sum_probs=73.0

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      +..+.+.+.+.+.+.....+++.+.... ...++.....++..|++.+..+...+.++    ..   +..-...+++.+.
T Consensus        10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~----~~---~~yd~~~~~~~c~   81 (143)
T PF00637_consen   10 ISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLK----TS---NNYDLDKALRLCE   81 (143)
T ss_dssp             SCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTT----SS---SSS-CTHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcc----cc---cccCHHHHHHHHH
Confidence            3445566666777777777777766433 23557777777788887777677766665    11   1122235666667


Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG  149 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  149 (625)
                      +.|.+++|.-++.++ ..+......+...++++.|.+.+.+      .++...|..++..+...+
T Consensus        82 ~~~l~~~a~~Ly~~~-~~~~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~  139 (143)
T PF00637_consen   82 KHGLYEEAVYLYSKL-GNHDEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSK  139 (143)
T ss_dssp             TTTSHHHHHHHHHCC-TTHTTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTST
T ss_pred             hcchHHHHHHHHHHc-ccHHHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcC
Confidence            777777777777665 2222222233344555555532222      134566666666665444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.28  E-value=5.4  Score=33.42  Aligned_cols=78  Identities=14%  Similarity=-0.003  Sum_probs=53.3

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCChh
Q 038112          479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR---NCVPNLVTYNTLMDGLFKTGDCD  555 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~  555 (625)
                      .+.|+ +.|...|-.+...+.-.++.....|+..|. ..+.++++.++.+..+.   +-.+|+.++..|+..+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34444 567777777766654456666666665554 67788888888777764   22567888888888888888887


Q ss_pred             HHH
Q 038112          556 KAL  558 (625)
Q Consensus       556 ~A~  558 (625)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            764

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.21  E-value=2.2  Score=30.45  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                      -+.++-++.+...++-|++....+.+++|.+.+|+..|.++|+-++..
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K   71 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK   71 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            355566666666777788888888888888888888888888877643

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.17  E-value=0.9  Score=25.08  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112           75 VALSVIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        75 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      ++..++..|...|++++|...|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344455555555555555555555443

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.01  E-value=15  Score=33.63  Aligned_cols=130  Identities=14%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCCC--
Q 038112          450 GEAYSFVKEMLEKGWKPDMITYSLLINGLCQ--SK----KIDMALKLCCQFLQKGF---TPDVTMYNILIHGLCSAGK--  518 (625)
Q Consensus       450 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--  518 (625)
                      ++.+.+++.+.+.|+.-+..++.........  ..    ...+|..+++.|.+..+   .++...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3445666777777776665554442222221  22    24567777777776421   1223333333222  2333  


Q ss_pred             --HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038112          519 --VEDALQLYSNMKKRNCVPN--LVTYNTLMDGLFKTGD--CDKALEIWNHILEERLRPDIISYNITLK  581 (625)
Q Consensus       519 --~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~  581 (625)
                        .+.+..+|+.+.+.|+..+  ......++..+.....  ..++.++++.+.+.|+++....|..++-
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence              2455667777777666543  2233333333222222  3466777777777777766655554443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.94  E-value=25  Score=35.96  Aligned_cols=243  Identities=16%  Similarity=0.089  Sum_probs=136.7

Q ss_pred             CCCHHHHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 038112          323 NGKVDEAISIWELLRE-------KNCNADSTTHGVLINGLCKNG-----YLNKAIQILNEVEEGGEGRLADAASLVNRMD  390 (625)
Q Consensus       323 ~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~  390 (625)
                      ..+.+.|+.+++.+.+       .+   .+.....+..+|.+..     +.+.|..++.                  ...
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~------------------~aA  320 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYT------------------KAA  320 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHH------------------HHH
Confidence            3456666666665554       33   3334455566665533     4566666666                  333


Q ss_pred             hCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCC
Q 038112          391 KHGCKLNAYTCNSLMNGFIQA---SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC----KVERFGEAYSFVKEMLEKG  463 (625)
Q Consensus       391 ~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~  463 (625)
                      ..+.+ +..  ..+..++...   .+...|.++|......|..   ..+-.+..+|.    -..+...|..++.+..+.|
T Consensus       321 ~~g~~-~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  321 ELGNP-DAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             hcCCc-hHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            44322 222  2233333322   4678999999998887633   33333332222    2447889999999999887


Q ss_pred             CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHc----CCCHHHHHHHHHHHHhCCCCC
Q 038112          464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG---LCS----AGKVEDALQLYSNMKKRNCVP  536 (625)
Q Consensus       464 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~~~~~  536 (625)
                       .|........+..+.. +.++.+.-.+..+...|.+.....-..+...   ...    ..+...+...+.+....|   
T Consensus       395 -~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---  469 (552)
T KOG1550|consen  395 -NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---  469 (552)
T ss_pred             -ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---
Confidence             4443333333344444 7777777666666665433111111111111   111    225667777777777655   


Q ss_pred             CHHHHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHC
Q 038112          537 NLVTYNTLMDGLFKT----GDCDKALEIWNHILEERLRPDIISYNITLKGLCS----CSRMSDAFEFLNDALCR  602 (625)
Q Consensus       537 ~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  602 (625)
                      +......|+.+|...    .+++.|...|..+.+.+    ......+...+-+    .. ...|.++++...+.
T Consensus       470 ~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  470 NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEE  538 (552)
T ss_pred             CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhc
Confidence            667777788777654    36888988888888754    4444444443332    23 67888888888754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.81  E-value=0.86  Score=26.66  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          539 VTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .+++.|+..|...|++++|..+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3455666666666666666666666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.79  E-value=26  Score=36.04  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=14.6

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          314 NILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       314 ~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      ..|+..|...+++..|+.++-.+.
T Consensus       509 e~La~LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  509 EVLAHLYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHHHHHHHccChHHHHHHHHhcc
Confidence            336666666666666666665444

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.78  E-value=6.1  Score=28.68  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-+..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4455555555556666677777777777777777777777666655

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.71  E-value=2.7  Score=30.36  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHH
Q 038112          118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI  177 (625)
Q Consensus       118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  177 (625)
                      +.++-++.+...++-|++.+..+.+++|.+.+++..|.++|+-++.. ..+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence            45556666667777788888888888888888888888888877765 222233555554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.63  E-value=4.2  Score=34.85  Aligned_cols=119  Identities=12%  Similarity=0.001  Sum_probs=77.0

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCh
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPDV-TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDC  554 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  554 (625)
                      .|.....++.|...+.+.+..  .|+. .-|..-+.++.+..+++.+..--.+.++  +.|| ......++.+......+
T Consensus        19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence            356666778888887777764  4554 4455666777778888888777777776  3455 44555666777777788


Q ss_pred             hHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          555 DKALEIWNHILEE----RLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       555 ~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      ++|+..+.++.+.    .+.|...+...|..+-.+.-...+..++.++.
T Consensus        95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~  143 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL  143 (284)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence            8888888887542    23344455666666544444555555555554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.17  E-value=2  Score=41.92  Aligned_cols=110  Identities=15%  Similarity=-0.012  Sum_probs=73.8

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      ..++...-.+...|+...|.+.+..+........-.....|+....+.|..-+|-.++.+..... ...+.++..+++++
T Consensus       608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~  686 (886)
T KOG4507|consen  608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY  686 (886)
T ss_pred             EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence            33444444455678888888888777653222222334456677777778888888888877763 44577788888888


Q ss_pred             HccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112          549 FKTGDCDKALEIWNHILEERLRP-DIISYNITLK  581 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  581 (625)
                      ....++++|++.|+++++  ..| +...-+.+..
T Consensus       687 l~l~~i~~a~~~~~~a~~--~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  687 LALKNISGALEAFRQALK--LTTKCPECENSLKL  718 (886)
T ss_pred             HHHhhhHHHHHHHHHHHh--cCCCChhhHHHHHH
Confidence            888899999999999888  455 3344444443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.04  E-value=23  Score=34.25  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHH-------cCCCCC----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHILE-------ERLRPD----------IISYNITLKGLCSCSRMSDAFEFLNDALCRG  603 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  603 (625)
                      ||.|+-.+.+.|.+.-+..+|.+++.       .|++|.          .++.....-.|.+.|++-.|.+-|.+.... 
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-  364 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-  364 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-
Confidence            35555555555555555555555542       243331          122233344555666666666666655542 


Q ss_pred             CCCCHHHHHHHHHHHH
Q 038112          604 ILPTTITWHILVRAVM  619 (625)
Q Consensus       604 ~~~~~~~~~~l~~~~~  619 (625)
                      +.-++..|=.+..+|.
T Consensus       365 fh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  365 FHRNPRLWLRLAECCI  380 (696)
T ss_pred             HhcCcHHHHHHHHHHH
Confidence            4455566655555554

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.87  E-value=5.4  Score=35.73  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112          465 KPDMITYSLLINGLCQSKKIDMALKLCCQFLQKG---FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTY  541 (625)
Q Consensus       465 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  541 (625)
                      +....+...++..-....+++.+...+-++....   ..|+...+ ..++.+ ..-++++++.++..-++.|+-||..++
T Consensus        61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~  138 (418)
T KOG4570|consen   61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF  138 (418)
T ss_pred             CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence            3334444555544455566666666666555420   11111111 122222 233556666666666666777777777


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHH
Q 038112          542 NTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       542 ~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +.+++.+.+.+++.+|..+.-.|+.
T Consensus       139 c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  139 CLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHH
Confidence            7777777777777776666665554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=88.42  E-value=32  Score=35.23  Aligned_cols=120  Identities=12%  Similarity=0.045  Sum_probs=68.8

Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC  554 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  554 (625)
                      ++..-|+-+.|..+.+++.... .|-  ..-...++.+|+-.|+.....+++.-.+.. ...|..-....+-++.-..++
T Consensus       510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp  587 (929)
T KOG2062|consen  510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP  587 (929)
T ss_pred             HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence            4445566667777777776532 221  112234556677777777666766665543 233444444555556666677


Q ss_pred             hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          555 DKALEIWNHILEERLRPDII--SYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       555 ~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      +....+..-+.+. ..|-..  +-..|.-+|.-.|. .+|+.+++-|.
T Consensus       588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~  633 (929)
T KOG2062|consen  588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLT  633 (929)
T ss_pred             hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhh
Confidence            7777777666553 444332  22333445555665 47788888776

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.40  E-value=12  Score=32.43  Aligned_cols=63  Identities=17%  Similarity=0.068  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHccCCh-------hHHHHHHHHHHHcCCCC----CH-HHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 038112          540 TYNTLMDGLFKTGDC-------DKALEIWNHILEERLRP----DI-ISYNITLKGLCSCSRMSDAFEFLNDALCR  602 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  602 (625)
                      ++..+++.|...|+.       ..|.+.|+++.+..-.|    +. .....++....+.|++++|.++|.++...
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            344555555555553       23444444444432221    12 23333445566667777777777777643

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.17  E-value=30  Score=36.91  Aligned_cols=125  Identities=10%  Similarity=0.101  Sum_probs=61.8

Q ss_pred             HHHHHHHHhhCCCChhHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHccCCc--hHHHHHHHHhHHhhCCCcchhhhcC
Q 038112           40 LFHHILRRLIDPKLVVHVSRILELIEIQK---CYCPEDVALSVIQAYGKNSMP--DKALDVFQRMNEIFGCEAGILCRKR  114 (625)
Q Consensus        40 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~  114 (625)
                      -|..|+..|...|..++|+++|....+..   .+...+.+-.+++-+.+.+..  +-.+++-+...            +.
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl------------~~  573 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVL------------NK  573 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhh------------cc
Confidence            35566666777777777777777776632   011122233344444444433  33333333332            23


Q ss_pred             ChHHHHHHHHHH---HHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112          115 QFEKAKRFLNSL---WEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK  182 (625)
Q Consensus       115 ~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  182 (625)
                      +++...++|..-   ....+++     ..++ .+......+.++..++.+....-.++....+.++..|.+
T Consensus       574 ~p~~gi~Ift~~~~~~~~sis~-----~~Vl-~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  574 NPEAGIQIFTSEDKQEAESISR-----DDVL-NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             CchhheeeeeccChhhhccCCH-----HHHH-HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence            344444444430   1111111     1122 245566677777778877766545566666666666654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.83  E-value=7.9  Score=38.04  Aligned_cols=62  Identities=8%  Similarity=-0.070  Sum_probs=39.2

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCY   70 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~   70 (625)
                      .|+.+|.+.|...+|--++..|....  +.-..-++.++++++..+.+......|....+.++.
T Consensus       254 SlaTiL~RaG~sadA~iILhAA~~dA--~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~  315 (886)
T KOG4507|consen  254 SLATVLHRAGFSADAAVILHAALDDA--DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG  315 (886)
T ss_pred             hHHHHHHHcccccchhheeehhccCC--ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence            35677777777777777776665443  222222566677777777777777777777766643

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.39  E-value=32  Score=34.09  Aligned_cols=175  Identities=13%  Similarity=0.029  Sum_probs=102.7

Q ss_pred             CCCChhHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch--hhhcCCh
Q 038112           50 DPKLVVHVSRILELIEIQK-----------CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--LCRKRQF  116 (625)
Q Consensus        50 ~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~  116 (625)
                      ....|+++...|..+....           .|...+.+..++..+-.+|+.+.|..+.++.+-...+....  -.-.|+.
T Consensus       250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c  329 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC  329 (665)
T ss_pred             cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence            3556788888888777654           24456677888899999999999999888764421111111  0000000


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHH---HHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHH-hcCChhHHHHH
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGT---VINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFF-KKGDYMRAKEI  192 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~  192 (625)
                      .         +....+-|...|..   .++.+.+.|.+..|.++..-+.+..+.-|+.....++..|+ +..+|+-.+++
T Consensus       330 R---------L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~  400 (665)
T KOG2422|consen  330 R---------LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIEL  400 (665)
T ss_pred             c---------CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHH
Confidence            0         00001122222322   24556788999999999999988876667887777777765 66788888888


Q ss_pred             HHHHHhCCC--CCCCcchHHHHHHHHHhcCC---hhhHHHHHHHHH
Q 038112          193 WERLVMETS--VYPNVVTYNVMINGLCKCGR---FDECLEMWDRMK  233 (625)
Q Consensus       193 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~  233 (625)
                      ++.....+.  .-||..--..++..|.+...   ...|...+.+..
T Consensus       401 ~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl  446 (665)
T KOG2422|consen  401 SNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL  446 (665)
T ss_pred             HHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence            877644321  22333223334444444433   334444444444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.04  E-value=1.8  Score=25.26  Aligned_cols=29  Identities=24%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                      ..+++.++..|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35678888889899999999998888765

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=86.75  E-value=32  Score=33.44  Aligned_cols=100  Identities=12%  Similarity=0.081  Sum_probs=69.8

Q ss_pred             CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--ccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112          500 TPDVTM-YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF--KTGDCDKALEIWNHILEERLRPDIISY  576 (625)
Q Consensus       500 ~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~  576 (625)
                      .|+..+ -+.++..+.+.|-+++|...+..+... .+|+...|..++..-.  ..-+..-+..+|+.|... ...|+..|
T Consensus       456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw  533 (568)
T KOG2396|consen  456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW  533 (568)
T ss_pred             CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence            344333 356677777888899999999998886 4667777777665432  223477788888888764 23577777


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          577 NITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       577 ~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ......-...|+.+.+-.++.++.+
T Consensus       534 ~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  534 MDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHHHhhccCCCcccccHHHHHHHH
Confidence            7777666678888887777777654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.58  E-value=0.82  Score=23.49  Aligned_cols=15  Identities=27%  Similarity=0.266  Sum_probs=5.7

Q ss_pred             HHHHHccCChhHHHH
Q 038112            9 LNLLKAEKNPHTALA   23 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~   23 (625)
                      ++++..+|++++|..
T Consensus         8 a~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    8 ARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHcCCHHHHHH
Confidence            333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.52  E-value=23  Score=31.62  Aligned_cols=58  Identities=21%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          280 NAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      ......|..+|.+.+|.++.+.....+|.+...+..++..+...|+--.+.+.++++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445566777777777777777777777777777777777777777666666665554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.48  E-value=1.9  Score=25.77  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=14.9

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHH
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .|+.+|...|+.+.|.+++++++.
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Confidence            355666666666666666666664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=86.45  E-value=17  Score=29.80  Aligned_cols=122  Identities=14%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 038112          227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG--KIKECFELWEVMGR  304 (625)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~  304 (625)
                      +.++.+.+.+++++...+..++..+.+.|.+....    .++..++-+|.......+-.+....  -.+-+.+++.++. 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-   89 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-   89 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence            45556666677777777888888888777755433    3444455555544443332222111  1223333333332 


Q ss_pred             cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038112          305 KGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNK  363 (625)
Q Consensus       305 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  363 (625)
                            ..+..++..+...|++-+|+++.+.....    +......++.+..+.++...
T Consensus        90 ------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~l  138 (167)
T PF07035_consen   90 ------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQL  138 (167)
T ss_pred             ------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHH
Confidence                  24556667777888888888777664332    22222344455444444433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.33  E-value=0.96  Score=23.24  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=10.3

Q ss_pred             HHHHHHHHccCCchHHHHHH
Q 038112           77 LSVIQAYGKNSMPDKALDVF   96 (625)
Q Consensus        77 ~~l~~~~~~~~~~~~A~~~~   96 (625)
                      ..++..+...|++++|..++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHH
Confidence            34455555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=86.29  E-value=27  Score=32.13  Aligned_cols=190  Identities=15%  Similarity=-0.004  Sum_probs=114.2

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----c
Q 038112          410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLC----KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----S  481 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  481 (625)
                      ..+++..+...+......+   +......+...|.    ...+..+|..++....+.|..   .....+...|..    .
T Consensus        53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence            3455666666666665532   2233333333333    234577788888877765532   233334444443    3


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 038112          482 KKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-------KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----  550 (625)
Q Consensus       482 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  550 (625)
                      .+..+|...+.++.+.|..+.......+...|....       +...|...|.++...+   +......|+..|..    
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence            478888888888888774433233445555554431       2337888888888765   55566666666644    


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112          551 TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCS---------------RMSDAFEFLNDALCRGILPTTITWH  612 (625)
Q Consensus       551 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~~~~~~~~  612 (625)
                      ..+..+|...|.++.+.|.   ......+. .+...|               +...|..++......+.........
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  276 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR  276 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence            3478889999999888653   33333333 445444               7778888888888776655555554

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=86.01  E-value=14  Score=28.60  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             CCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          500 TPDVTMYNILIHGLCSAGK---VEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       500 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      .++..+-..+.+++.+..+   ..+.+.+++.+.+.. .|  .......|+-++.+.+++++++++.+.+++  ..||.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n  104 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN  104 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence            4566666777888877664   456677888887632 23  244556677788888899999998888888  66654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.40  E-value=25  Score=30.91  Aligned_cols=248  Identities=14%  Similarity=0.094  Sum_probs=115.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCChhhHH
Q 038112          281 AMIDGFCRAGKIKECFELWEVMGRKG------CLNVVSYNILIRGLLENGKVDEAISIWELLREK-----NCNADSTTHG  349 (625)
Q Consensus       281 ~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~  349 (625)
                      .++..+.+.+++++..+.+.++..--      .-+..+.+.++.......+.+....+|+.-+..     +-+.--.|-.
T Consensus        70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt  149 (440)
T KOG1464|consen   70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT  149 (440)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence            34444555555555555544443210      013344445554444444444444433322211     0111122334


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK-G  428 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~  428 (625)
                      .+...|...+.+....+++.++.......-.+      .-.+.|. .-..+|..-+..|....+-..-..++++.... .
T Consensus       150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGe------dD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKS  222 (440)
T KOG1464|consen  150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGE------DDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKS  222 (440)
T ss_pred             hHhhhheeHHHHHHHHHHHHHHHHHhccccCc------hhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhc
Confidence            56777788888888888877665432110000      0011111 12345666677888888777777888876542 1


Q ss_pred             CCCChhhHHHHHHH-----HhccCCHHHHHHH-HHHHHH---CCCCCCHhh---HHHHHHHHhccCC-HHHHHHHHHHHH
Q 038112          429 CSPTVVSYNTLING-----LCKVERFGEAYSF-VKEMLE---KGWKPDMIT---YSLLINGLCQSKK-IDMALKLCCQFL  495 (625)
Q Consensus       429 ~~~~~~~~~~l~~~-----~~~~~~~~~a~~~-~~~~~~---~~~~~~~~~---~~~l~~~~~~~~~-~~~A~~~~~~~~  495 (625)
                      .-|.+... .+|+-     ..+.|++++|..- |+....   .| .|...+   |..+...+.+.|- +-...    ++.
T Consensus       223 AIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLANMLmkS~iNPFDsQ----EAK  296 (440)
T KOG1464|consen  223 AIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLANMLMKSGINPFDSQ----EAK  296 (440)
T ss_pred             cCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHHHHHHcCCCCCccc----ccC
Confidence            22343333 23333     3457788877643 333332   23 222222   3344444444431 00000    001


Q ss_pred             hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112          496 QKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT  543 (625)
Q Consensus       496 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  543 (625)
                      -..-.|.......++.+|. .++..+-.+++..-... +-.|+.+-..
T Consensus       297 PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~-IM~DpFIReh  342 (440)
T KOG1464|consen  297 PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSN-IMDDPFIREH  342 (440)
T ss_pred             CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhcc-ccccHHHHHH
Confidence            1111344566778888884 45565555555544433 5556655443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.36  E-value=50  Score=34.37  Aligned_cols=185  Identities=12%  Similarity=0.183  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHH-CCCCCC--HhHHHHHHHHHH-hcCChhhHHHHHHHHHhCCCCCCch-----hhHHHHHHHHhcCChh
Q 038112          117 EKAKRFLNSLWE-KGLKPD--VYSYGTVINGLV-KSGDLLGALAVFDEMFERGVETNVV-----CYNILIDGFFKKGDYM  187 (625)
Q Consensus       117 ~~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~  187 (625)
                      ..|+++++.+.. ..++|.  ..++..+...+. ...+++.|...+++.+..--.++..     ....+++.+.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            456666666663 333332  233444555554 5667777777777765442222211     1223455565555555


Q ss_pred             HHHHHHHHHHhCCCCCCC---cchHHHH-HHHHHhcCChhhHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCCHH
Q 038112          188 RAKEIWERLVMETSVYPN---VVTYNVM-INGLCKCGRFDECLEMWDRMKKNE---REKDSFTYCSFIHGLC--KAGNVE  258 (625)
Q Consensus       188 ~a~~~~~~~~~~~~~~~~---~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~  258 (625)
                       |...+++..+.-...+.   ...+..+ +..+...+++..|.+.++.+....   ..|...++..++.+..  ..+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             77777665554211111   1122222 222323367777777777665432   1233333444444332  345455


Q ss_pred             HHHHHHHHHHHCCC---------CcCHHHHHHHHHHH--HhcCCHHHHHHHHHHH
Q 038112          259 GAERVYREMVESGI---------FVDAVTYNAMIDGF--CRAGKIKECFELWEVM  302 (625)
Q Consensus       259 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~  302 (625)
                      .+.+.++.+.....         .|...++..++..+  ...|+++.+...++++
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56666655532211         22344455554443  3456655655555444

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK09687 putative lyase; Provisional

Probab=85.33  E-value=29  Score=31.61  Aligned_cols=203  Identities=11%  Similarity=0.055  Sum_probs=128.6

Q ss_pred             cHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH-----HHHHHHHHHHHHCCCCCC
Q 038112          397 NAYTCNSLMNGFIQASKL----ENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERF-----GEAYSFVKEMLEKGWKPD  467 (625)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~  467 (625)
                      ++..-...+.++.+.|+.    +.+...+..+...  .++...-...+.++...+..     ..+...+.....   .++
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~  141 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS  141 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence            444445555566666652    4566677666443  35655555666666554421     233444434333   345


Q ss_pred             HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112          468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNMKKRNCVPNLVTYNTLMD  546 (625)
Q Consensus       468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  546 (625)
                      ..+-...+.++.+.++ +.+...+..+++   .++..+-...+.++...+ ....+...+..+..   .+|..+-...+.
T Consensus       142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~  214 (280)
T PRK09687        142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII  214 (280)
T ss_pred             HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence            5666677777877776 567777777776   345555555555565543 24567777777774   457777778888


Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112          547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMN  620 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  620 (625)
                      ++.+.|+ ..|+..+-+.++.   ++  .....+.++...|.. +|+..+..+.+.  .||..+-...+.+|.+
T Consensus       215 aLg~~~~-~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        215 GLALRKD-KRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHccCC-hhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence            8888888 5677777777763   23  345677888888885 799999999863  3688777777777753

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.32  E-value=50  Score=34.31  Aligned_cols=41  Identities=12%  Similarity=0.147  Sum_probs=19.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      ++-.|.+.|++++|.++....... .......+...+..|..
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~  157 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS  157 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence            455566666666666666333322 22233444444555444

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.32  E-value=27  Score=31.25  Aligned_cols=71  Identities=13%  Similarity=0.121  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHH-----HCCCCCCHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDAL-----CRGILPTTITWH  612 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~  612 (625)
                      ++....+.|..+|.+.+|.++.++++.  +.| +...+..++..+...|+--.|.+-++++.     +.|+..|...++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee  357 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE  357 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence            455677889999999999999999998  777 77788888899999999888888888774     357777766544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.23  E-value=26  Score=30.87  Aligned_cols=251  Identities=11%  Similarity=0.105  Sum_probs=138.4

Q ss_pred             CCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCC
Q 038112          290 GKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISIWELLREK---N--CNADSTTHGVLINGLCKNGY  360 (625)
Q Consensus       290 ~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~  360 (625)
                      .++++|+.-|+++....+.    .-.+...++....+.+++++....|.+++.-   .  -.-+..+.+.++...+...+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            4566666666666554332    3345566788888999999998888877642   0  11244556666666666666


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------
Q 038112          361 LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS----------  430 (625)
Q Consensus       361 ~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------  430 (625)
                      .+.....++.-..           .+......  ..--.+-..+...|...+.+.+..+++.++....-.          
T Consensus       121 m~LLQ~FYeTTL~-----------ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKG  187 (440)
T KOG1464|consen  121 MDLLQEFYETTLD-----------ALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKG  187 (440)
T ss_pred             hHHHHHHHHHHHH-----------HHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhcc
Confidence            6655555553111           11111111  111112245777888889999999998888753111          


Q ss_pred             -CChhhHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH-----HhccCCHHHHHHHHHHHHh----CCC
Q 038112          431 -PTVVSYNTLINGLCKVERFGEAYSFVKEMLEK-GWKPDMITYSLLING-----LCQSKKIDMALKLCCQFLQ----KGF  499 (625)
Q Consensus       431 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~----~~~  499 (625)
                       .-...|..-|+.|....+-..-..++++.+.- .--|.+... .+++-     ..+.|++++|..-|-++.+    .|.
T Consensus       188 tQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs  266 (440)
T KOG1464|consen  188 TQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS  266 (440)
T ss_pred             chhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence             11345777788888777777777778776542 122333332 33333     3567888887654444333    342


Q ss_pred             CCCHH--HHHHHHHHHHcCC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038112          500 TPDVT--MYNILIHGLCSAG----KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWN  562 (625)
Q Consensus       500 ~~~~~--~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  562 (625)
                      +....  -|..|+..+.+.|    +-++|.       ...-.|.......|+.+|... +..+-.++++
T Consensus       267 pRRttCLKYLVLANMLmkS~iNPFDsQEAK-------PyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~  327 (440)
T KOG1464|consen  267 PRRTTCLKYLVLANMLMKSGINPFDSQEAK-------PYKNDPEILAMTNLVAAYQNN-DIIEFERILK  327 (440)
T ss_pred             cchhHHHHHHHHHHHHHHcCCCCCcccccC-------CCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence            22222  2444555565555    112221       111245566677888887653 4444444433

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.99  E-value=2.4  Score=25.30  Aligned_cols=23  Identities=13%  Similarity=0.211  Sum_probs=12.2

Q ss_pred             HHHHHhhcCChHHHHHHHHHHHH
Q 038112          579 TLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       579 l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++.+|...|+.+.|.+++++.+.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44455555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.75  E-value=8.5  Score=33.21  Aligned_cols=21  Identities=19%  Similarity=-0.039  Sum_probs=14.1

Q ss_pred             HHHHHccCChhHHHHHHHhhc
Q 038112            9 LNLLKAEKNPHTALALFDSAT   29 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~   29 (625)
                      ++=|..+|++.+|..-|+.|+
T Consensus       185 GN~lfk~~~ykEA~~~YreAi  205 (329)
T KOG0545|consen  185 GNRLFKLGRYKEASSKYREAI  205 (329)
T ss_pred             hhhhhhhccHHHHHHHHHHHH
Confidence            455667777877777776653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=84.33  E-value=5.3  Score=25.09  Aligned_cols=31  Identities=32%  Similarity=0.470  Sum_probs=17.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038112          542 NTLMDGLFKTGDCDKALEIWNHILEERLRPDII  574 (625)
Q Consensus       542 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  574 (625)
                      ..++-++.+.|++++|.++.+.+++  +.|+..
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~   35 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNR   35 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence            3455556666666666666666666  566543

>smart00028 TPR Tetratricopeptide repeats

Probab=84.10  E-value=1.9  Score=22.84  Aligned_cols=26  Identities=38%  Similarity=0.572  Sum_probs=12.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +..++.++...|+++.|...++..++
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            33444444444455555544444443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=84.08  E-value=7.1  Score=24.53  Aligned_cols=41  Identities=15%  Similarity=0.080  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112          576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV  618 (625)
Q Consensus       576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  618 (625)
                      ...+.-++.+.|++++|.++++.+++  +.|+......|-...
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence            45567789999999999999999996  568877666655544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=84.06  E-value=18  Score=28.09  Aligned_cols=70  Identities=7%  Similarity=0.059  Sum_probs=36.7

Q ss_pred             ChhhHHHHHHHHHhcC---CHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112          240 DSFTYCSFIHGLCKAG---NVEGAERVYREMVE-SGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN  309 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  309 (625)
                      +..+-..+..++.+..   +..+.+.+++++.+ ..+.........+.-++.+.++++.++.+.+.+.+..|.+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            3444444555555443   34455666666664 2222233444455556666666666666666665554443

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.75  E-value=3.6  Score=28.18  Aligned_cols=48  Identities=13%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCChHHHHHHHH
Q 038112          550 KTGDCDKALEIWNHILEERLRPD--IISYNITLKGLCSCSRMSDAFEFLN  597 (625)
Q Consensus       550 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~  597 (625)
                      ...+.++|+..|++++++-..|.  ..++..++.+|+..|++.+++++.-
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778888888777433332  1455666677777788777766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.48  E-value=14  Score=26.56  Aligned_cols=46  Identities=15%  Similarity=0.157  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ++.+-++.+...+..|++.+....+++|.+.+|+.-|+++++.+..
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445555555555666666666666666666666666666665553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK10941 hypothetical protein; Provisional

Probab=83.46  E-value=8.2  Score=34.66  Aligned_cols=62  Identities=13%  Similarity=-0.083  Sum_probs=35.0

Q ss_pred             HhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           47 RLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        47 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      ++.+.++++.|.++.+.++...|. ++.-+.--+-.|.+.|.+..|..=++...+.-|..+.+
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            455566666666666666665432 44444444555666666666666666655555555554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=83.22  E-value=1.4  Score=41.93  Aligned_cols=95  Identities=9%  Similarity=-0.100  Sum_probs=63.2

Q ss_pred             HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112           12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK   91 (625)
Q Consensus        12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (625)
                      .+..++++.|+..|-.++..+  |..+..+.....++.+.+++..|..=+..+++.. |.....|..-+.++.+.+.+.+
T Consensus        14 ~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   14 ALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             hcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence            345567777887777777776  6666666666677777777777777777777765 3344455555556666667777


Q ss_pred             HHHHHHHhHHhhCCCcch
Q 038112           92 ALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        92 A~~~~~~~~~~~~~~~~~  109 (625)
                      |+..|+......|..+.+
T Consensus        91 A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             HHHHHHHhhhcCcCcHHH
Confidence            777777665555555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.92  E-value=1  Score=40.68  Aligned_cols=118  Identities=10%  Similarity=-0.003  Sum_probs=75.7

Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHH
Q 038112          479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A  557 (625)
                      ...|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++=+......  .|| ..-|-.-..+....|++++|
T Consensus       125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHH
Confidence            45677888888887777764 445666666677777788888888877777764  344 33444555566667888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          558 LEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       558 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ...+..+.+.++.+...  ..+-...-+.+..++-...+++.++
T Consensus       202 a~dl~~a~kld~dE~~~--a~lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  202 AHDLALACKLDYDEANS--ATLKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHHHHHhccccHHHH--HHHHHhccchhhhhhchhHHHHHHH
Confidence            88888888755544332  3333444455555555555555553

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=82.73  E-value=36  Score=30.64  Aligned_cols=138  Identities=12%  Similarity=0.195  Sum_probs=77.4

Q ss_pred             cCChhhHHHHHHHHHh-CCCCCCchhhHHHHHHHHh-cC-ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh
Q 038112          148 SGDLLGALAVFDEMFE-RGVETNVVCYNILIDGFFK-KG-DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE  224 (625)
Q Consensus       148 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  224 (625)
                      +....+|+.+|+..-. ..+--|..+...+++.... .+ ....-.++.+-+....+..++..+....+..++..+++.+
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3344556666652111 1123356666666666554 22 2222233444444443345566667777788888888888


Q ss_pred             HHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHH
Q 038112          225 CLEMWDRMKKN-EREKDSFTYCSFIHGLCKAGNVEGAERVYRE-----MVESGIFVDAVTYNAMIDG  285 (625)
Q Consensus       225 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~  285 (625)
                      -.++++..... ++..|...|..++......|+..-...+.++     +.+.++..+...-..+-+.
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L  287 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL  287 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence            88877776654 4556777788888888888887655555443     1233444444444444333

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=81.53  E-value=21  Score=31.70  Aligned_cols=89  Identities=16%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK--  550 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  550 (625)
                      .-|.+++..+++.+++...-+.-+..-+..+.+...-|-.|.+.+.+..+.++-.......-.-+...|..++..|..  
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V  167 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV  167 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence            446788888999888877666554322223556666677788999999888888887764111123346666665554  


Q ss_pred             ---cCChhHHHHHH
Q 038112          551 ---TGDCDKALEIW  561 (625)
Q Consensus       551 ---~g~~~~A~~~~  561 (625)
                         .|.+++|.++.
T Consensus       168 LlPLG~~~eAeelv  181 (309)
T PF07163_consen  168 LLPLGHFSEAEELV  181 (309)
T ss_pred             HhccccHHHHHHHH
Confidence               78888888876

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=81.19  E-value=48  Score=31.04  Aligned_cols=59  Identities=5%  Similarity=-0.082  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          260 AERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      -+.+++++++.++ .+...+..++..+.+..+.++..+.|+.+....+.+...|...+..
T Consensus        50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            3444455444432 2444444444555555555555555555555444444444444443

>PRK10941 hypothetical protein; Provisional

Probab=80.74  E-value=31  Score=31.13  Aligned_cols=75  Identities=15%  Similarity=0.047  Sum_probs=39.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCR-GILPTTITWHILVRAVM  619 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~  619 (625)
                      .+-.+|.+.++++.|+.+.+.++.  +.| ++.-+..-+-.|.+.|.+..|..-++..++. .-.|+.......+..+.
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~  262 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE  262 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence            444455566666666666666665  455 3344444555566666666666666655532 23344444444444443

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=80.48  E-value=34  Score=31.17  Aligned_cols=23  Identities=26%  Similarity=0.118  Sum_probs=10.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHh
Q 038112          176 LIDGFFKKGDYMRAKEIWERLVM  198 (625)
Q Consensus       176 l~~~~~~~g~~~~a~~~~~~~~~  198 (625)
                      ++-+..+.|+..+|.+.++.+.+
T Consensus       281 LAMCARklGrlrEA~K~~RDL~k  303 (556)
T KOG3807|consen  281 LAMCARKLGRLREAVKIMRDLMK  303 (556)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhh
Confidence            33333444444444444444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.06  E-value=61  Score=31.53  Aligned_cols=331  Identities=12%  Similarity=0.038  Sum_probs=163.5

Q ss_pred             HHHHHH-HccCChhHHHHHHHhhccCCCCCCCH-----HHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCC---CHHHH
Q 038112            7 RLLNLL-KAEKNPHTALALFDSATREPGYAHSP-----HLFHHILRRLIDPK-LVVHVSRILELIEIQKCYC---PEDVA   76 (625)
Q Consensus         7 ~l~~~l-~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~   76 (625)
                      +|+.+| ....+++.|...++.+......-|+.     .++..++..+.... .+..+..++++.+...-..   .-...
T Consensus        51 qLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckll  130 (629)
T KOG2300|consen   51 QLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLL  130 (629)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHH
Confidence            456555 57899999999999775433212222     45666777777654 8999999999998754222   22355


Q ss_pred             HHHHHHHHccCCchHHHHHHHHhHHhhCCCcch--------------hhhcCC---hHHHHHHHHHHHHCCCCCCHhH--
Q 038112           77 LSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI--------------LCRKRQ---FEKAKRFLNSLWEKGLKPDVYS--  137 (625)
Q Consensus        77 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~---~~~A~~~~~~~~~~~~~~~~~~--  137 (625)
                      ..+++.+.-..++..|.+++.--.. +......              +..+.+   ...+.....++.+. ..+|..-  
T Consensus       131 fQLaql~~idkD~~sA~elLavga~-sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E  208 (629)
T KOG2300|consen  131 FQLAQLHIIDKDFPSALELLAVGAE-SADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKE  208 (629)
T ss_pred             HHHHHHHhhhccchhHHHHHhcccc-ccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHH
Confidence            6788899999999999998653211 1111000              222233   44444455555554 2444321  


Q ss_pred             ----HHHH--HHHHHhcCChhhHHHHHHHHHhC---CCC------------CCchhhHHHHH-------------HHHhc
Q 038112          138 ----YGTV--INGLVKSGDLLGALAVFDEMFER---GVE------------TNVVCYNILID-------------GFFKK  183 (625)
Q Consensus       138 ----~~~l--~~~~~~~~~~~~a~~~~~~~~~~---~~~------------~~~~~~~~l~~-------------~~~~~  183 (625)
                          |...  +.-|.-.|+...+...++++.+.   +.+            |.+..+..+.+             .-...
T Consensus       209 ~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~  288 (629)
T KOG2300|consen  209 MLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPA  288 (629)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhh
Confidence                2222  23344567777777776665432   211            22222222211             00122


Q ss_pred             CChhHHHHHHHHHHhCCC---CCC-CcchHH--------HHHHHHHhcCChhhHHHHHHHHHhCCC-CCCh--------h
Q 038112          184 GDYMRAKEIWERLVMETS---VYP-NVVTYN--------VMINGLCKCGRFDECLEMWDRMKKNER-EKDS--------F  242 (625)
Q Consensus       184 g~~~~a~~~~~~~~~~~~---~~~-~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--------~  242 (625)
                      |-+++|.+.-+++.....   ..+ ....++        .++.+-.-.|++.+|++-+..|.+.-. .|.+        .
T Consensus       289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~  368 (629)
T KOG2300|consen  289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ  368 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence            444444444333332110   001 111111        122233346777777776666654211 1221        1


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HHHH
Q 038112          243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVT--YNAMIDGFCRAGKIKECFELWEVMGRKGCLN-------VVSY  313 (625)
Q Consensus       243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~  313 (625)
                      ....+...++..+.++.|..-|....+.--..|...  -..+...|.+.|+.+.-.++++.+...+..+       ...+
T Consensus       369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~  448 (629)
T KOG2300|consen  369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASIL  448 (629)
T ss_pred             HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHH
Confidence            112223334455667777776666655422222222  2334556666666555555554443322110       1112


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          314 NILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       314 ~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      ..-+-.....+++.+|...+.+-++.
T Consensus       449 ~v~glfaf~qn~lnEaK~~l~e~Lkm  474 (629)
T KOG2300|consen  449 YVYGLFAFKQNDLNEAKRFLRETLKM  474 (629)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            22222233566777777766665543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.02  E-value=22  Score=32.13  Aligned_cols=104  Identities=18%  Similarity=0.164  Sum_probs=48.1

Q ss_pred             CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCh
Q 038112          164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETS--VYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDS  241 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  241 (625)
                      .|.+.++.+...++..-....+.+.++..+-++.....  ..++. +-...++.+. .-+.++++.++..=++.|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            34444444444444444445556666665555443210  01111 1112222222 22344555555544555555555


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      .+++.++..+.+.+++..|.++...|..
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5555555555555555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	625
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.4 bits (212), Expect = 1e-17
 Identities = 22/199 (11%), Positives = 65/199 (32%), Gaps = 4/199 (2%)

Query: 378 RLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA---IFLFKEMSRKGCSPTVV 434
            L    +   +  +           +     +   +L  A   + +     +K    T+ 
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166

Query: 435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMAL-KLCCQ 493
            YN ++ G  +   F E    +  + + G  PD+++Y+  +  + +  +    + +   Q
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226

Query: 494 FLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGD 553
             Q+G         +L+     A  ++   ++         +P  V  + L+  ++    
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286

Query: 554 CDKALEIWNHILEERLRPD 572
                ++   +   +   +
Sbjct: 287 RVSYPKLHLPLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.1 bits (206), Expect = 5e-17
 Identities = 23/195 (11%), Positives = 56/195 (28%), Gaps = 4/195 (2%)

Query: 420 LFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLC 479
           L     +   SP       L+             +   +  +                  
Sbjct: 79  LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138

Query: 480 QSKKIDMALKLCCQF---LQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP 536
            + ++ +A  L        QK     + MYN ++ G    G  ++ + +   +K     P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198

Query: 537 NLVTYNTLMDGLFKTGDCDKALE-IWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEF 595
           +L++Y   +  + +       +E     + +E L+   +   + L      + +    + 
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258

Query: 596 LNDALCRGILPTTIT 610
                    LP  + 
Sbjct: 259 KPTFSLPPQLPPPVN 273

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 77.2 bits (188), Expect = 7e-15
 Identities = 16/151 (10%), Positives = 46/151 (30%), Gaps = 4/151 (2%)

Query: 187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD---ECLEMWDRMKKNEREKDSFT 243
           +  ++       +  +                  +       L +    ++  +      
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167

Query: 244 YCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE-LWEVM 302
           Y + + G  + G  +    V   + ++G+  D ++Y A +    R  +     E   E M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227

Query: 303 GRKGCLNVVSYNILIRGLLENGKVDEAISIW 333
            ++G      +  ++    +   V +A+   
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 74.5 bits (181), Expect = 6e-14
 Identities = 23/213 (10%), Positives = 64/213 (30%), Gaps = 21/213 (9%)

Query: 253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG----CL 308
              +++  +    +  ++ +        A         ++     L  V   +      L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL 368
            +  YN ++ G    G   E + +  ++++     D  ++   +  + +       I+  
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIER- 222

Query: 369 NEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG 428
                            + +M + G KL A     L++   +A+ L+    +    S   
Sbjct: 223 ----------------CLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP 266

Query: 429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE 461
             P  V+ + L+  +   +           +  
Sbjct: 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.9 bits (164), Expect = 5e-12
 Identities = 46/501 (9%), Positives = 119/501 (23%), Gaps = 93/501 (18%)

Query: 12  LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDP---KLVVHVSRILELIEIQK 68
            + +  P            +         +   L RL+     KL + V +       Q 
Sbjct: 62  RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA 121

Query: 69  CYCPEDVAL-SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLW 127
               +   L +  +          A  +    +                           
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH------------------------GQR 157

Query: 128 EKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM 187
           +K     +  Y  V+ G  + G     + V   + + G+                     
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT-------------------- 197

Query: 188 RAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLE-MWDRMKKNEREKDSFTYCS 246
                           P++++Y   +  + +  +    +E   ++M +   +  +     
Sbjct: 198 ----------------PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241

Query: 247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG 306
            +    +A  ++   +V             V  + ++             +L   +    
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301

Query: 307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQ 366
           CL     +      +E       +S+ +          +      +    +   L +A++
Sbjct: 302 CLFEKQLH------MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKA-LCRALR 354

Query: 367 ILNEVEEGGEG----------RLADAASLVN-------RMDKHGCKLNAYTCNSLMNGFI 409
                 E               L D   +V         +   G              F 
Sbjct: 355 ETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFS 414

Query: 410 QASKLENAIFLFKEMSRKGCSPTVVSY--NTLINGLCKVERFGEAYSFVKEMLEKGWKPD 467
           +       +    +  +      +     +  +   C   ++ EA    + + E+ W   
Sbjct: 415 RHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLP 474

Query: 468 MIT--YSLLINGLCQSKKIDM 486
           +      LL   L Q+ ++  
Sbjct: 475 VQMELGKLLAEMLVQATQMPC 495

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.0 bits (159), Expect = 2e-11
 Identities = 17/170 (10%), Positives = 44/170 (25%), Gaps = 4/170 (2%)

Query: 381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLI 440
            A  L +   +            L+        L+       + S+   S          
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 441 NGLCKVERFGEAYSFV---KEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK 497
                 ++   A+  +       +K     +  Y+ ++ G  +       + +       
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 498 GFTPDVTMYNILIHGLCSAGKVEDALQLY-SNMKKRNCVPNLVTYNTLMD 546
           G TPD+  Y   +  +    +    ++     M +       +    L+ 
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 101/674 (14%), Positives = 196/674 (29%), Gaps = 207/674 (30%)

Query: 39  HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN----SMPDKALD 94
           H  HH            H+    E  E Q  Y  +D+      A+  N     + D    
Sbjct: 1   HHHHH------------HMD--FETGEHQYQY--KDILSVFEDAFVDNFDCKDVQDMPKS 44

Query: 95  VF---------------QRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYG 139
           +                     +F      L  K++ E  ++F+    E+ L+ + Y + 
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWT----LLSKQE-EMVQKFV----EEVLRIN-YKF- 93

Query: 140 TVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDG--FFKKGDYMRAKEIWE--R 195
                      L+  +              +   + L +    F K +  R +   +  +
Sbjct: 94  -----------LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 196 LVMETSVYPNVVTY-------NVMINGLC-------------------KCGRFDECLEM- 228
            ++E     NV+           +   +C                    C   +  LEM 
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 229 ---WDRMKKN--EREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMI 283
                ++  N   R   S      IH +          + Y   +   + +  V      
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNVQNAKAW 259

Query: 284 DGF---CRAGKIKECFELWEVMGR-KGCLNVVSYNILIRGLLENGKV----DEAISIWEL 335
           + F   C+         L  +  R K   + +S        L++  +    DE  S+  L
Sbjct: 260 NAFNLSCKI--------L--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L 307

Query: 336 LREKNCNADSTTHGVL-INGLCKNGYLNKAIQILNEVEEGGEGRLADAASL---VNRMD- 390
           L+  +C        VL  N           + I+             A S+   +   D 
Sbjct: 308 LKYLDCRPQDLPREVLTTNPR--------RLSII-------------AESIRDGLATWDN 346

Query: 391 -KHGCKLNAYTCNSLMNGFIQAS--KLENAIF--LFKEMSRKGCSPTVVSYNTLI--NGL 443
            KH        C+ L    I++S   LE A +  +F  +S       V   +  I    L
Sbjct: 347 WKH------VNCDKLTT-IIESSLNVLEPAEYRKMFDRLS-------VFPPSAHIPTILL 392

Query: 444 CKV---ERFGEAYSFVKE-----MLEKGWKPDMIT-YSLLINGLCQS-------KKIDMA 487
             +       +    V +     ++EK  K   I+  S+ +    +        + I   
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 488 LKLCCQFLQKGFTPDVT---MYNILIHGLCSAGKVEDAL---QLYSNM-----KKRNCVP 536
             +   F      P       Y+ + H L +    E       ++ +      K R+   
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 537 NLVTYNTLMDGLFKTGDCDKALEIW-NHILE-----ERLRPDIISYNITLKGLCSCSRMS 590
                 ++++ L         L+ +  +I +     ERL   I+ +   ++    CS+ +
Sbjct: 513 AWNASGSILNTL---QQ----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

Query: 591 D----AFEFLNDAL 600
           D    A    ++A+
Sbjct: 566 DLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 7e-10
 Identities = 62/407 (15%), Positives = 124/407 (30%), Gaps = 110/407 (27%)

Query: 8   LLNLLKAE-KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEI 66
           L++ +K E + P     ++    R+  Y +   +F          K   +VSR+   +++
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIE-QRDRLY-NDNQVF---------AKY--NVSRLQPYLKL 140

Query: 67  QKCYC---PED--------------VALSVIQAY---------------GKNSMPDKALD 94
           ++      P                VAL V  +Y                  + P+  L+
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 95  VFQRMNEIFGCEAGILCR-----KRQFEKAKRFLNSLWEKGLKP-------DVYSYGTVI 142
           + Q++                  K +    +  L  L +            +V +     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAW 259

Query: 143 NG-------LVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK-KGDYMRAKEIWE 194
           N        L+ +        V D  F     T  +  +         +   +  K +  
Sbjct: 260 NAFNLSCKILLTTRF----KQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 195 R---LVME-TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHG 250
           R   L  E  +  P  ++   +I    +     + L  WD  K    +K +    S ++ 
Sbjct: 314 RPQDLPREVLTTNPRRLS---IIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 251 LCKAGNVEGAERVYREMVES-GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN 309
           L      E AE  YR+M +   +F  +   +                 +W  + +   + 
Sbjct: 366 L------EPAE--YRKMFDRLSVFPPSA--HIPTILLSL---------IWFDVIKSDVMV 406

Query: 310 VVSYNILI-RGLLENGKVDEAISIWELLREKNCNADSTT--HGVLIN 353
           VV  N L    L+E    +  ISI  +  E     ++    H  +++
Sbjct: 407 VV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 9e-07
 Identities = 44/271 (16%), Positives = 84/271 (30%), Gaps = 75/271 (27%)

Query: 399 YTCNSLMNGFIQA----------SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVER 448
           Y    +++ F  A            +  +I   +E+     S   VS    +      ++
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 449 FGEAYSFVKEMLEK--GW----------KPDMIT--YSLLINGLCQS------------K 482
                 FV+E+L     +          +P M+T  Y    + L               +
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK---VEDALQLYS------------ 527
              + L+     L+          N+LI G+  +GK     D    Y             
Sbjct: 136 PY-LKLRQALLELRPA-------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 528 NMKKRNCVPNLVT-----YNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS--YN--- 577
           N+K  N    ++         +        D    +++  H ++  LR  + S  Y    
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 578 ITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
           + L  + + ++  +AF       C+ IL TT
Sbjct: 248 LVLLNVQN-AKAWNAFNL----SCK-ILLTT 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 72/226 (31%)

Query: 1   MVISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRI 60
           MV+   +L      EK P                  S    +  L+  ++ +  +H   I
Sbjct: 405 MVV-VNKLHKYSLVEKQPKE-------------STISIPSIYLELKVKLENEYALH-RSI 449

Query: 61  LELIEIQKCYCPEDVALSVIQAY-----G---KNSMPDKALDVFQRMNEIFGCEAGILCR 112
           ++   I K +  +D+    +  Y     G   KN    + + +F+ +             
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV------------- 496

Query: 113 KRQFEKAKRFLNSLW-EKGLKPDVYSYGTVINGLVKSGDLLGALAVF-------DEMFER 164
                    FL+  + E+ ++ D     T  N      + L  L  +       D  +ER
Sbjct: 497 ---------FLDFRFLEQKIRHD----STAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 165 ----------GVETNVVCY---NILIDGFFKKGD--YMRAKEIWER 195
                      +E N++C    ++L      + +  +  A +  +R
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 38/183 (20%)

Query: 453 YSFVKEMLEKGWKPDMITYSL--LINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILI 510
           Y  +  + E  +  +     +  +   +   ++ID  +              V+    L 
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS---------KDAVSGTLRLF 68

Query: 511 HGLCSAGK------VEDALQ-----LYSNMKKRNCVPNLVT--YNTLMDGLFKTGDC--- 554
             L S  +      VE+ L+     L S +K     P+++T  Y    D L+        
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 555 ------DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTT 608
                    L++   +LE  LRP     N+ + G+    +   A +       +  +   
Sbjct: 129 YNVSRLQPYLKLRQALLE--LRPAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 609 ITW 611
           I W
Sbjct: 184 IFW 186

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 22/198 (11%), Positives = 57/198 (28%), Gaps = 23/198 (11%)

Query: 91  KALDVFQRMNEIFGC-----EAGILCRK-RQFEKAKRFLN---SLWEKGLKPD-VYSYGT 140
           +  +       +F       +AG++ +  ++  +A +++     ++ +   PD       
Sbjct: 61  QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD 120

Query: 141 VINGLVKSGDLLGALAVFDEMFERGVETN-----VVCYNILIDGFFKKGDYMRAKEIWER 195
               L++  DL  A+ ++ +                          ++  +  A    ++
Sbjct: 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180

Query: 196 ---LVMETSVYPNVV-TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL 251
              +  E   YP         +        +    +             S   C+ +  L
Sbjct: 181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSED-CAALEDL 239

Query: 252 CKA---GNVEGAERVYRE 266
            +A    + E   RV R 
Sbjct: 240 LQAYDEQDEEQLLRVCRS 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	625
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.75
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.68
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.63
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.62
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.58
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.52
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.51
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.5
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.38
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.34
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.33
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.26
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.24
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.23
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.22
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.22
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.2
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.19
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.18
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.18
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.17
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.09
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.02
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.0
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.98
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.95
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.94
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.93
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.92
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.92
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.92
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.86
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.84
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.84
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.84
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.84
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.82
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.79
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.78
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.77
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.74
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.73
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.73
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.72
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.69
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.66
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.6
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.6
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.51
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.46
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.43
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.42
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.37
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.36
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.33
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.29
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.23
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.22
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.2
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.12
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.0
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.97
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.95
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.93
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.72
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.71
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.58
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.35
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.26
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.22
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.2
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.11
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.09
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.68
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.3
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.05
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.8
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.74
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.67
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.64
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.5
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.21
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.12
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.04
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.28
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.2
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	93.51
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.59
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.23
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.09
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.28
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.09
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.71
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.55
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.25
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.83
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.87
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.29
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.88
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	87.36
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.99
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.7
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.5
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	84.73
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.99
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.25

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-40  Score=339.87  Aligned_cols=488  Identities=13%  Similarity=0.011  Sum_probs=360.0

Q ss_pred             CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 038112           71 CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD  150 (625)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (625)
                      ++...+..++..+.+.|++++|+.+|+++...                             .|+..++..++.+|.+.|+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~p~~~~~~~l~~~~~~~g~  132 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-----------------------------TGNPNDAFWLAQVYCCTGD  132 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----------------------------CCCchHHHHHHHHHHHcCc
Confidence            34566667777777777777777777766331                             1344455555555555555


Q ss_pred             hhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC--------------CCCCCcchHHHHHHHH
Q 038112          151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET--------------SVYPNVVTYNVMINGL  216 (625)
Q Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~  216 (625)
                      +++|..+|+++...  ++++.++..++.+|.+.|++++|+++|+++....              +.+++..+|+.++.+|
T Consensus       133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (597)
T 2xpi_A          133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY  210 (597)
T ss_dssp             HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence            55555555555432  3455555555555555555555555555322211              2345677888888888


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112          217 CKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER--V-YREMVESGIFVDAVTYNAMIDGFCRAGKIK  293 (625)
Q Consensus       217 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (625)
                      .+.|++++|+++|+++.+.++ .+...+..++..+...+..+.+..  + +..+...+..+...++..++..|.+.|+++
T Consensus       211 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  289 (597)
T 2xpi_A          211 TNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR  289 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence            888888888888888887653 245556656555444333222221  1 455555544445566666778888888899


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE  373 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  373 (625)
                      +|.++|+.+... +++..+|+.++.++.+.|++++|..+|+++.+.++. +..++..++..+...|++++|..++++   
T Consensus       290 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~---  364 (597)
T 2xpi_A          290 RAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISND---  364 (597)
T ss_dssp             HHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHH---
T ss_pred             HHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHH---
Confidence            999999888766 468888889999999999999999999988877644 677888888888999999999988884   


Q ss_pred             cCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038112          374 GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY  453 (625)
Q Consensus       374 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  453 (625)
                                     +... .+.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+
T Consensus       365 ---------------~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  427 (597)
T 2xpi_A          365 ---------------LVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI  427 (597)
T ss_dssp             ---------------HHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ---------------HHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence                           3322 23467788888999999999999999999988753 236778999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-
Q 038112          454 SFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR-  532 (625)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  532 (625)
                      .+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. 
T Consensus       428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence            9999988763 4477888899999999999999999999998764 447888999999999999999999999998875 


Q ss_pred             ---CCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC
Q 038112          533 ---NCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILP  606 (625)
Q Consensus       533 ---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  606 (625)
                         +..|+  ..+|..++.+|.+.|++++|.++++++++  ..| +..+|..++.+|.+.|++++|.++++++++.  .|
T Consensus       506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p  581 (597)
T 2xpi_A          506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SP  581 (597)
T ss_dssp             HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CC
Confidence               45676  78899999999999999999999999988  445 6788999999999999999999999999874  45


Q ss_pred             C-HHHHHHHHHHH
Q 038112          607 T-TITWHILVRAV  618 (625)
Q Consensus       607 ~-~~~~~~l~~~~  618 (625)
                      + ...+..+..+|
T Consensus       582 ~~~~~~~~l~~~~  594 (597)
T 2xpi_A          582 NEIMASDLLKRAL  594 (597)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHH
Confidence            4 45555555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.8e-40  Score=337.12  Aligned_cols=488  Identities=11%  Similarity=0.026  Sum_probs=414.1

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ  115 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  115 (625)
                      ++...|..++..+.+.|++++|..+|++++...+  +...+..++.+|.+.|++++|+.+|+++..              
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------  145 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------------  145 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------------
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC--CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------------
Confidence            5678889999999999999999999999998753  668888999999999999999999998732              


Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC---------------CCCCCchhhHHHHHHH
Q 038112          116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER---------------GVETNVVCYNILIDGF  180 (625)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~  180 (625)
                                     .+++..+++.++.++.+.|++++|+.+|+++...               +.+.+..+|..++.+|
T Consensus       146 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (597)
T 2xpi_A          146 ---------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY  210 (597)
T ss_dssp             ---------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred             ---------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence                           2568889999999999999999999999953322               1233578999999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHH--H-HHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 038112          181 FKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLE--M-WDRMKKNEREKDSFTYCSFIHGLCKAGNV  257 (625)
Q Consensus       181 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  257 (625)
                      .+.|++++|++.|+++.+.+  +.+...+..++..+...+..+.+..  + +..+...++.....+|..++..|.+.|++
T Consensus       211 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  288 (597)
T 2xpi_A          211 TNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL  288 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence            99999999999999998864  3445566666655554443332221  1 44454444444555677778889999999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          258 EGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      ++|.++|+++.+.  +++..++..++.+|.+.|++++|.++|+++...++.+..++..++.++.+.|++++|..+++.+.
T Consensus       289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999875  57999999999999999999999999999999988899999999999999999999999999999


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 038112          338 EKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENA  417 (625)
Q Consensus       338 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  417 (625)
                      ... +.+..++..++..|.+.|++++|.++|++                  +.... +.+..+|+.++..|.+.|++++|
T Consensus       367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------------------~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  426 (597)
T 2xpi_A          367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK------------------SSTMD-PQFGPAWIGFAHSFAIEGEHDQA  426 (597)
T ss_dssp             HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH------------------HHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH------------------HHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            764 34788899999999999999999999994                  33322 34678999999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038112          418 IFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK  497 (625)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  497 (625)
                      .++|+++.+.++ .+..+|..++.+|.+.|++++|..+|+++.+.. +.+..++..++..|.+.|++++|.++|+++.+.
T Consensus       427 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          427 ISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999998743 478899999999999999999999999999863 457889999999999999999999999999875


Q ss_pred             ----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          498 ----GFTPD--VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       498 ----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                          +..|+  ..+|..++.+|.+.|++++|..+++++.+.+ +.+..+|..++.+|...|++++|.++|+++++  +.|
T Consensus       505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p  581 (597)
T 2xpi_A          505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISP  581 (597)
T ss_dssp             HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred             hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCC
Confidence                55777  7899999999999999999999999999864 55899999999999999999999999999999  677


Q ss_pred             C-HHHHHHHHHHH
Q 038112          572 D-IISYNITLKGL  583 (625)
Q Consensus       572 ~-~~~~~~l~~~~  583 (625)
                      + ...+..+..+|
T Consensus       582 ~~~~~~~~l~~~~  594 (597)
T 2xpi_A          582 NEIMASDLLKRAL  594 (597)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHH
Confidence            4 56666666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=7.7e-30  Score=246.43  Aligned_cols=377  Identities=15%  Similarity=0.065  Sum_probs=331.8

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++..+.++|++++|+..|+.+++..  |.++.++..++..+...|++++|...++.+++.. |.+...+..++..+.+.
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~   80 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER   80 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence            36788899999999999999999887  8999999999999999999999999999999986 45889999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      |++++|+..|+++....|..+.+       +.+.|++++|...|++++..+ |.+...+..+...+...|++++|...|+
T Consensus        81 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999999999888877664       788999999999999999876 5566778888899999999999999999


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      ++.+.. +.+..+|..++.++...|++++|...|+++.+..  +.+...+..+...+...|++++|+..+++.....+ .
T Consensus       160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~  235 (388)
T 1w3b_A          160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N  235 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence            999874 3367889999999999999999999999999864  45667899999999999999999999999987654 4


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      +..++..++..+...|++++|+..|+++++..+. +..++..++.++.+.|++++|.+.|+.+....|.+..++..++..
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            6788999999999999999999999999987543 678899999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHH
Q 038112          320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAY  399 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  399 (625)
                      +...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.                  ... +.+..
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------~~~-p~~~~  374 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI------------------RIS-PTFAD  374 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------TTC-TTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------hhC-CCCHH
Confidence            9999999999999999998743 367788899999999999999999999543                  322 23556


Q ss_pred             HHHHHHHHHHhcC
Q 038112          400 TCNSLMNGFIQAS  412 (625)
Q Consensus       400 ~~~~l~~~~~~~~  412 (625)
                      .+..+...+...|
T Consensus       375 a~~~lg~~~~~~~  387 (388)
T 1w3b_A          375 AYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHhHHHHHHHcc
Confidence            6666666655544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.5e-29  Score=242.81  Aligned_cols=213  Identities=17%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 038112          401 CNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ  480 (625)
Q Consensus       401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  480 (625)
                      +..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+++..... +.+..++..++..+..
T Consensus       172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  249 (388)
T 1w3b_A          172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYE  249 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHH
Confidence            33333334444444444444444433221 123334444444444444444444444444421 1123444444444445


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 038112          481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEI  560 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  560 (625)
                      .|++++|...++++++.+ +.+..++..++.++...|++++|...|+++.+. .+.+..++..++.++...|++++|...
T Consensus       250 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~  327 (388)
T 1w3b_A          250 QGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555444432 223444445555555555555555555555443 233444555555555555555555555


Q ss_pred             HHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 038112          561 WNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT-TITWHILVRAVMNN  621 (625)
Q Consensus       561 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  621 (625)
                      ++++++  ..| +..++..++.+|.+.|++++|.+.++++++  +.|+ ...|..+...+...
T Consensus       328 ~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          328 YRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence            555544  333 234444555555555555555555555543  2232 33444444444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.2e-28  Score=238.58  Aligned_cols=185  Identities=16%  Similarity=0.186  Sum_probs=109.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC---------HHHHHHHHHHHHhCCCCCCHHHH
Q 038112          436 YNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKK---------IDMALKLCCQFLQKGFTPDVTMY  506 (625)
Q Consensus       436 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~  506 (625)
                      ++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+.         +++|.++|++|...|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            445555555555555555555555555555555555555555544332         45556666666666666666666


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112          507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC  586 (625)
Q Consensus       507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  586 (625)
                      +.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038112          587 SRMSDAFEFLNDALCRGILPTTITWHILVRAVMN  620 (625)
Q Consensus       587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  620 (625)
                      |+.++|.+++++|.+.|..|+..||+.++..++.
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666665666666666666555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2e-27  Score=231.78  Aligned_cols=199  Identities=16%  Similarity=0.249  Sum_probs=181.8

Q ss_pred             HHhhCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---------HHHHHHHHH
Q 038112          388 RMDKHGCKLNA-YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVER---------FGEAYSFVK  457 (625)
Q Consensus       388 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~  457 (625)
                      .+.+.+....+ .+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+.         .++|.++|+
T Consensus        15 ~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~   94 (501)
T 4g26_A           15 KAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK   94 (501)
T ss_dssp             ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHH
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHH
Confidence            55555554443 46888999999999999999999999999999999999999999987654         688999999


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 038112          458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN  537 (625)
Q Consensus       458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  537 (625)
                      +|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus        95 ~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A           95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 038112          538 LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSC  586 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  586 (625)
                      ..+|+.|+.+|.+.|+.++|.+++++|.+.|..|+..||..++..|...
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999888753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-25  Score=224.40  Aligned_cols=432  Identities=11%  Similarity=-0.030  Sum_probs=286.9

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHH
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKE  191 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  191 (625)
                      +.|++++|+..|++++..+  |+..+|..++.++.+.|++++|+..++++.+.+ +.+..++..++.++...|++++|..
T Consensus        18 ~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   94 (514)
T 2gw1_A           18 RNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF   94 (514)
T ss_dssp             HTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3344444444444445444  578888888888888999999999999888874 3366788888888889999999999


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG  271 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  271 (625)
                      .|+.+....  +++......++..+........+.+.+..+...+..|+...+..................+...+....
T Consensus        95 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (514)
T 2gw1_A           95 DLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK  172 (514)
T ss_dssp             HHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred             HHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence            998888764  344444444444444433333333333222211111111111100000000011111111111111111


Q ss_pred             C---------CcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--C-------CCcHHHHHHHHHHHHhCCC
Q 038112          272 I---------FVDAVTYNAMIDGFCR---AGKIKECFELWEVMGR-----K--G-------CLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       272 ~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~  325 (625)
                      .         +.+...+......+..   .|++++|+..|+.+..     .  .       +.+..++..++..+...|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (514)
T 2gw1_A          173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND  252 (514)
T ss_dssp             CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence            0         1124555555555554   7888888888888877     3  2       2356778888888888899


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112          326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM  405 (625)
Q Consensus       326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  405 (625)
                      +++|...++++....+.  ...+..+...+...|++++|...++++.                  ... +.+..++..+.
T Consensus       253 ~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~  311 (514)
T 2gw1_A          253 PLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL------------------KLD-SNNSSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH------------------TTC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh------------------hcC-cCCHHHHHHHH
Confidence            99999998888887544  6777778888888888888888888433                  222 23556778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHH
Q 038112          406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKID  485 (625)
Q Consensus       406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  485 (625)
                      ..+...|++++|...|+++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence            8888889999999999888876433 56678888888888999999999998888752 335667788888888899999


Q ss_pred             HHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHH
Q 038112          486 MALKLCCQFLQKGFT-PD----VTMYNILIHGLCS---AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKA  557 (625)
Q Consensus       486 ~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  557 (625)
                      +|...++++.+.... ++    ...+..++.++..   .|++++|...++++.... +.+..++..++.++...|++++|
T Consensus       390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence            999988888764211 11    3378888888888   899999999998888752 44677888888999999999999


Q ss_pred             HHHHHHHHHcCCCCCHH
Q 038112          558 LEIWNHILEERLRPDII  574 (625)
Q Consensus       558 ~~~~~~~~~~~~~p~~~  574 (625)
                      ...|+++++  +.|+..
T Consensus       469 ~~~~~~a~~--~~~~~~  483 (514)
T 2gw1_A          469 ITLFEESAD--LARTME  483 (514)
T ss_dssp             HHHHHHHHH--HCSSHH
T ss_pred             HHHHHHHHH--hccccH
Confidence            999999888  667553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-25  Score=223.64  Aligned_cols=442  Identities=9%  Similarity=-0.029  Sum_probs=328.4

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN  214 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  214 (625)
                      ...+......+.+.|++++|+..|+++.+.+  |++.++..++.++...|++++|+..++.+.+..  +.+..++..++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~   81 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence            4567777888999999999999999999885  588899999999999999999999999998863  556678999999


Q ss_pred             HHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038112          215 GLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE  294 (625)
Q Consensus       215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  294 (625)
                      ++...|++++|...|+++...++ ++......++..+........+.+.+..+...+..|+...................
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence            99999999999999999988764 34444444454444433333333333222221111111111000000001111111


Q ss_pred             HHHHHHHHHhc----------CCCcHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH-----cCCC--------CChhhH
Q 038112          295 CFELWEVMGRK----------GCLNVVSYNILIRGLLE---NGKVDEAISIWELLRE-----KNCN--------ADSTTH  348 (625)
Q Consensus       295 a~~~~~~~~~~----------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~  348 (625)
                      ...+...+...          .+.+...+......+..   .|++++|+..++++..     ....        .+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence            11111111111          12346777777777775   8999999999999988     3111        134567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112          349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG  428 (625)
Q Consensus       349 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  428 (625)
                      ..+...+...|++++|...+++                  .......  ...+..+...+...|++++|...++++....
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~------------------~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  300 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKK------------------AIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD  300 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHH------------------HHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHH------------------HHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence            7788899999999999999984                  3333323  7788899999999999999999999998864


Q ss_pred             CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112          429 CSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNI  508 (625)
Q Consensus       429 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  508 (625)
                      + .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus       301 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  377 (514)
T 2gw1_A          301 S-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNF  377 (514)
T ss_dssp             T-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHH
Confidence            3 367788999999999999999999999999863 3356788899999999999999999999998863 446788899


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHc---cCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 038112          509 LIHGLCSAGKVEDALQLYSNMKKRNCVPN------LVTYNTLMDGLFK---TGDCDKALEIWNHILEERLRP-DIISYNI  578 (625)
Q Consensus       509 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~~~~~~  578 (625)
                      ++.++...|++++|...++++.+.. +.+      ...+..++.++..   .|++++|...++++++  ..| +..++..
T Consensus       378 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~  454 (514)
T 2gw1_A          378 FAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence            9999999999999999999998742 112      3489999999999   9999999999999998  456 5678889


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          579 TLKGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      ++.+|.+.|++++|.+.++++++.  .|+..
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~--~~~~~  483 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADL--ARTME  483 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence            999999999999999999999974  46543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=3.7e-25  Score=223.97  Aligned_cols=431  Identities=13%  Similarity=0.028  Sum_probs=319.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+..+|++++|+..|+.++..+  |.++.++..++.++.+.|++++|.+.++++++.+| .+...+..++.++..
T Consensus        29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence            456788999999999999999999888  89999999999999999999999999999999974 588899999999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcch----hhhcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGI----LCRKRQFEKAKRFLNSLWEKGL--KPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      .|++++|+..|+ .....|.....    +...+....|...+++++....  .+........+..+....+...+...+.
T Consensus       106 ~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (537)
T 3fp2_A          106 LGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN  184 (537)
T ss_dssp             HTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred             cCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence            999999999997 43444443333    6667778889999998865420  0111112233344455556555544443


Q ss_pred             HHHhCCCCCCch-hhHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCCC-------cchHHHHHHHHHhcCChh
Q 038112          160 EMFERGVETNVV-CYNILIDGFF--------KKGDYMRAKEIWERLVMETSVYPN-------VVTYNVMINGLCKCGRFD  223 (625)
Q Consensus       160 ~~~~~~~~~~~~-~~~~l~~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~  223 (625)
                      .....  .+... ....+...+.        ..|++++|...++.+.+..  +.+       ..++..+...+...|+++
T Consensus       185 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~  260 (537)
T 3fp2_A          185 TSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLL  260 (537)
T ss_dssp             CCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence            32221  11111 2222332222        2258899999999998764  222       224667778899999999


Q ss_pred             hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG  303 (625)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  303 (625)
                      +|...++++....  |+...+..+...+...|++++|...++++.+..+. +..++..++.++...|++++|.+.++.+.
T Consensus       261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999998875  44788889999999999999999999999987543 78889999999999999999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 038112          304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA  383 (625)
Q Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~  383 (625)
                      ...|.+..++..++.++...|++++|...++++....+. +...+..+...+...|++++|...++++....        
T Consensus       338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------  408 (537)
T 3fp2_A          338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--------  408 (537)
T ss_dssp             HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------
Confidence            999889999999999999999999999999999988533 66788889999999999999999999654311        


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038112          384 SLVNRMDKHGCKLNAYTCNSLMNGFIQA----------SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAY  453 (625)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  453 (625)
                           -...........+......+...          |++++|...|+++.+..+ .+...+..+..++...|++++|.
T Consensus       409 -----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~  482 (537)
T 3fp2_A          409 -----EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAI  482 (537)
T ss_dssp             -----HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -----CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHH
Confidence                 00111111222344445566666          888888888888776532 25567777777788888888888


Q ss_pred             HHHHHHHHC
Q 038112          454 SFVKEMLEK  462 (625)
Q Consensus       454 ~~~~~~~~~  462 (625)
                      ..|+++.+.
T Consensus       483 ~~~~~al~~  491 (537)
T 3fp2_A          483 ELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888887774

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=3.3e-24  Score=211.71  Aligned_cols=324  Identities=12%  Similarity=0.062  Sum_probs=248.0

Q ss_pred             hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 038112           19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQR   98 (625)
Q Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   98 (625)
                      ..+...+..++..+  |.++..+..++..+.+.|++++|...|+.+++.. |.+...+..++.++...|++++|...|++
T Consensus         9 ~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A            9 SGVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555556656555  7778888888888888888888888888888775 34677888888888888888888888888


Q ss_pred             hHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCH---hHHHHH------------HHHHHhcCChhhHHH
Q 038112           99 MNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDV---YSYGTV------------INGLVKSGDLLGALA  156 (625)
Q Consensus        99 ~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~  156 (625)
                      +.+..|..+.+       +...|++++|...|+++...+ +.+.   ..+..+            ...+...|++++|+.
T Consensus        86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            87776666554       667788888888888887765 3334   455544            444788999999999


Q ss_pred             HHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112          157 VFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE  236 (625)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  236 (625)
                      .|+++.+.. +.+..++..++.++...|++++|++.|+.+.+.  .+.+..++..++.++...|++++|+..|+++....
T Consensus       165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999998874 347788889999999999999999999998876  35567889999999999999999999999988764


Q ss_pred             CCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112          237 REKDSFTYCSF------------IHGLCKAGNVEGAERVYREMVESGIFVD----AVTYNAMIDGFCRAGKIKECFELWE  300 (625)
Q Consensus       237 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  300 (625)
                      + .+...+..+            +..+...|++++|...|+++++..+. +    ...+..++.++.+.|++++|+..++
T Consensus       242 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 Q-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             C-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3 244444444            78889999999999999999886432 2    3477888899999999999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112          301 VMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI  352 (625)
Q Consensus       301 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  352 (625)
                      .+....|.+..+|..++.++...|++++|...++++.+..+. +...+..+.
T Consensus       320 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~  370 (450)
T 2y4t_A          320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE  370 (450)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            999888889999999999999999999999999999886433 444554444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1e-23  Score=208.15  Aligned_cols=313  Identities=15%  Similarity=0.123  Sum_probs=141.8

Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI  248 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (625)
                      +...+..++..+.+.|++++|+..|+.+.+.  .+.+..++..++.++...|++++|+..|+++.+.++ .+..++..++
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~  101 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence            4445555555555555555555555555543  233444555555555555555555555555554432 2344555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDA---VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (625)
                      ..|...|++++|...|+++.+..+. +.   ..+..+...+..                      ..+..++..+...|+
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------~~~~~~a~~~~~~~~  158 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------QRLRSQALNAFGSGD  158 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHcCC
Confidence            5555555555555555555543211 22   333333222000                      001111222344444


Q ss_pred             HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHH
Q 038112          326 VDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLM  405 (625)
Q Consensus       326 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  405 (625)
                      +++|+..|+++....+. +...+..++..+...|++++|...++++.                  ... +.+..++..++
T Consensus       159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~  218 (450)
T 2y4t_A          159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAAS------------------KLK-NDNTEAFYKIS  218 (450)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHH------------------HHH-CSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------HhC-CCCHHHHHHHH
Confidence            44444444444433211 33333444444444444444444444211                  100 11334444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH------------HHHHHhccCCHHHHHHHHHHHHHCCCCCC-----H
Q 038112          406 NGFIQASKLENAIFLFKEMSRKGCSPTVVSYNT------------LINGLCKVERFGEAYSFVKEMLEKGWKPD-----M  468 (625)
Q Consensus       406 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~  468 (625)
                      ..|...|++++|...|+++....+. +...+..            ++..+...|++++|...++++.+.  .|+     .
T Consensus       219 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~  295 (450)
T 2y4t_A          219 TLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV  295 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence            4444455555555555444433111 1112222            144455555555555555555542  222     2


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                      ..+..++..+.+.|++++|...++++.+.. +.+...+..++.+|...|++++|...++++.+
T Consensus       296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            244445555555555555555555555432 22445555555555555555555555555555

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=2e-23  Score=211.22  Aligned_cols=429  Identities=10%  Similarity=0.010  Sum_probs=301.3

Q ss_pred             hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHH
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRA  189 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  189 (625)
                      +.+.|++++|+..|++++..+ |.+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..++.++...|++++|
T Consensus        35 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A  112 (537)
T 3fp2_A           35 FFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDA  112 (537)
T ss_dssp             HHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHH
Confidence            777788888888888887765 5567777788888888888888888888887764 33667777788888888888888


Q ss_pred             HHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112          190 KEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER--EKDSFTYCSFIHGLCKAGNVEGAERVYREM  267 (625)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  267 (625)
                      +..|+.+ ...   |+.  ....+..+...+....|...++.+....+  .+........+..+....+.+.+...+...
T Consensus       113 ~~~~~~~-~~~---~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T 3fp2_A          113 MFDLSVL-SLN---GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS  186 (537)
T ss_dssp             HHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred             HHHHHHH-hcC---CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence            8887633 221   221  11223344555556777777777764321  011111223344455555555555444332


Q ss_pred             HHCCCCcCH-HHHHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHhCCCHHHHHH
Q 038112          268 VESGIFVDA-VTYNAMIDGFCR--------AGKIKECFELWEVMGRKGCLNVV-------SYNILIRGLLENGKVDEAIS  331 (625)
Q Consensus       268 ~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~  331 (625)
                      ...  .+.. .....+...+..        .|++++|..+++.+....|.+..       ++..+...+...|++++|..
T Consensus       187 ~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  264 (537)
T 3fp2_A          187 SNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV  264 (537)
T ss_dssp             CSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            221  1221 122333333222        25789999999999988887644       46677788888999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112          332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA  411 (625)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  411 (625)
                      .++.+....  |+...+..+...+...|+++.|...++++.                  ... +.+..++..+...+...
T Consensus       265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~-~~~~~~~~~l~~~~~~~  323 (537)
T 3fp2_A          265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV------------------DLN-PEYPPTYYHRGQMYFIL  323 (537)
T ss_dssp             HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH------------------HHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh------------------ccC-CCCHHHHHHHHHHHHhc
Confidence            999999874  447778888889999999999999998533                  222 23677888999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 038112          412 SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLC  491 (625)
Q Consensus       412 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  491 (625)
                      |++++|...|+++.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus       324 ~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          324 QDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999876432 56788889999999999999999999998863 445678888899999999999999999


Q ss_pred             HHHHhCC-----CCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112          492 CQFLQKG-----FTPDVTMYNILIHGLCSA----------GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK  556 (625)
Q Consensus       492 ~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  556 (625)
                      +++.+..     .......+..++.++...          |++++|...++++.+. .+.+..++..++.++...|++++
T Consensus       402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHH
Confidence            9987632     111233345556777777          9999999999999986 35568889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHH
Q 038112          557 ALEIWNHILEERLRPDII  574 (625)
Q Consensus       557 A~~~~~~~~~~~~~p~~~  574 (625)
                      |...|+++++  +.|+..
T Consensus       481 A~~~~~~al~--~~~~~~  496 (537)
T 3fp2_A          481 AIELFEDSAI--LARTMD  496 (537)
T ss_dssp             HHHHHHHHHH--HC--CH
T ss_pred             HHHHHHHHHH--hCCCcH
Confidence            9999999999  566543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.92  E-value=5.7e-22  Score=189.38  Aligned_cols=326  Identities=15%  Similarity=0.065  Sum_probs=250.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      -.++..+...|++++|+..|+.++...  |.++.++..++.++...|++++|...++.+++.. |.+...+..++.++..
T Consensus         7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   83 (359)
T 3ieg_A            7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK   83 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence            457788899999999999999998877  8889999999999999999999999999999886 4477888999999999


Q ss_pred             cCCchHHHHHHHHhHHhhC---CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112           86 NSMPDKALDVFQRMNEIFG---CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMF  162 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  162 (625)
                      .|++++|...|+++.+..|   ..+.++...+....                ...+......+...|++++|+..++++.
T Consensus        84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~  147 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------MQRLRSQALDAFDGADYTAAITFLDKIL  147 (359)
T ss_dssp             HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9999999999998866544   33322221111111                1123334567778888888888888888


Q ss_pred             hCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChh
Q 038112          163 ERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSF  242 (625)
Q Consensus       163 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  242 (625)
                      +.. +.+...+..++.++...|++++|...++.+.+..  +.+..++..++..+...|++++|...+++..+..+ .+..
T Consensus       148 ~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~  223 (359)
T 3ieg_A          148 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKR  223 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchH
Confidence            774 3467778888888888888888888888888763  55667788888888888888888888888876543 2333


Q ss_pred             hHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112          243 TYC------------SFIHGLCKAGNVEGAERVYREMVESGIFVDA----VTYNAMIDGFCRAGKIKECFELWEVMGRKG  306 (625)
Q Consensus       243 ~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  306 (625)
                      .+.            .++..+...|++++|...++++.+..+. +.    ..+..+..++...|++++|.+.++.+....
T Consensus       224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            332            2366788899999999999998876433 33    235567788889999999999999998888


Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038112          307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC  356 (625)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  356 (625)
                      |.+..++..++.++...|++++|...|+++.+..+. +......+..+..
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~  351 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQR  351 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Confidence            888899999999999999999999999999887433 4555555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=3.3e-21  Score=184.07  Aligned_cols=310  Identities=11%  Similarity=0.027  Sum_probs=254.4

Q ss_pred             CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112           37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF  116 (625)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  116 (625)
                      ++..+..++..+...|++++|...|+.+++..| .+...+..++.++...|++++|...|+++.+..|            
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------   68 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM------------   68 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------------
Confidence            467788899999999999999999999999864 5788999999999999999999999988855333            


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCchhhHHH------------HHHHHh
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE--TNVVCYNIL------------IDGFFK  182 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~  182 (625)
                                      .+...+..+...+...|++++|...|+++.+..+.  .+...+..+            +..+..
T Consensus        69 ----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  132 (359)
T 3ieg_A           69 ----------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD  132 (359)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            34556666777777777777777777777665320  133344433            688999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112          183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER  262 (625)
Q Consensus       183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  262 (625)
                      .|++++|.+.++.+.+..  +.+...+..+..++...|++++|...++++....+ .+..++..++..+...|++++|..
T Consensus       133 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999998873  56677899999999999999999999999997754 578889999999999999999999


Q ss_pred             HHHHHHHCCCCcCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHhCCCH
Q 038112          263 VYREMVESGIFVDAVTYN------------AMIDGFCRAGKIKECFELWEVMGRKGCLNVV----SYNILIRGLLENGKV  326 (625)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~  326 (625)
                      .++.+.+..+. +...+.            .++..+.+.|++++|.+.++.+....|.+..    .+..+..++...|++
T Consensus       210 ~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  288 (359)
T 3ieg_A          210 EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP  288 (359)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH
Confidence            99999986433 334332            3367799999999999999999998887653    456788999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112          327 DEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA  380 (625)
Q Consensus       327 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  380 (625)
                      ++|...++...+..+. +...+..+...+...|++++|...++++.+..+....
T Consensus       289 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          289 VEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence            9999999999987433 6788899999999999999999999999988776544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.90  E-value=3.5e-18  Score=176.61  Aligned_cols=314  Identities=11%  Similarity=0.143  Sum_probs=226.9

Q ss_pred             HHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC
Q 038112           10 NLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM   88 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   88 (625)
                      +.+...|.+.+|+.+|+.+...+. +..+...-..++.+..+. +.....++.......       ....++..+...|.
T Consensus       993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A          993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNEL 1064 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCC
Confidence            455567777777777777764432 234444444455555544 334444443333311       12336778888999


Q ss_pred             chHHHHHHHHhHHhhCCCcchhh-hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112           89 PDKALDVFQRMNEIFGCEAGILC-RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE  167 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  167 (625)
                      +++|..+|++.. .+.....++. ..+++++|.++++++      .++.+|..+..++.+.|++++|+..|.+.      
T Consensus      1065 yEEAf~IYkKa~-~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A         1065 FEEAFAIFRKFD-VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence            999999998872 2222223344 778888888888866      24678889999999999999999998664      


Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF  247 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (625)
                      .|...|..++.++.+.|++++|++.+....+..   ++....+.++.+|.+.+++++.....    .   .++...|..+
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~i 1201 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQV 1201 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHH
Confidence            377888889999999999999999998777643   34444446888888888888544332    1   3466677778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                      ...|...|++++|..+|..+         ..|..++.++.+.|++++|.+.+++..     +..+|..+..+|...|++.
T Consensus      1202 Gd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1202 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhhhhHHH
Confidence            88999999999999999874         478888999999999999999998773     6788888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          328 EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE  373 (625)
Q Consensus       328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  373 (625)
                      .|......     +..++..+..++..|.+.|.+++|+.+++....
T Consensus      1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88876553     223566677888889999999999999886544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=7.5e-19  Score=174.51  Aligned_cols=364  Identities=13%  Similarity=0.044  Sum_probs=284.3

Q ss_pred             HHHHHHHHHhCCCCCCchhhHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhH
Q 038112          154 ALAVFDEMFERGVETNVVCYNILIDGFFK----KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----CGRFDEC  225 (625)
Q Consensus       154 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a  225 (625)
                      +...+....+.|   ++..+..+...|..    .+++++|...|++..+.+    +..++..+...|..    .+++++|
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A   98 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQA   98 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            345555554443   66777777777777    788888888888887653    55677778888887    7888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHH
Q 038112          226 LEMWDRMKKNEREKDSFTYCSFIHGLCK----AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFE  297 (625)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~  297 (625)
                      +++|++..+.+   ++..+..+...|..    .+++++|+..|++..+.+   ++..+..+...|..    .+++++|++
T Consensus        99 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A           99 VIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            88888887653   56667777777777    778888888888888765   56777778888876    778888888


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 038112          298 LWEVMGRKGCLNVVSYNILIRGLLE----NGKVDEAISIWELLREKNCNADSTTHGVLINGLCK----NGYLNKAIQILN  369 (625)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~  369 (625)
                      .|+.....+  ++.++..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|..+++
T Consensus       173 ~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  247 (490)
T 2xm6_A          173 WYSKAAEQG--NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS  247 (490)
T ss_dssp             HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHCC--CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            888887763  67788888888887    788889998888888765   55666777777765    778888888887


Q ss_pred             HHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038112          370 EVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQ----ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK  445 (625)
Q Consensus       370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  445 (625)
                      +                  ....+   ++..+..+...|..    .+++++|...|++..+.+   +...+..+...|..
T Consensus       248 ~------------------a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          248 Q------------------SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK  303 (490)
T ss_dssp             H------------------HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred             H------------------HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence            4                  33332   44556667777777    789999999999988753   55677777777777


Q ss_pred             c-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 038112          446 V-----ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK---KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS--  515 (625)
Q Consensus       446 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  515 (625)
                      .     +++++|+.++++..+.+   +...+..+...|...|   ++++|.+.|++..+.+   +...+..+..+|..  
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~  377 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK  377 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            6     89999999999998864   4566777777777656   7899999999999864   67888889999988  


Q ss_pred             --CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112          516 --AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER  568 (625)
Q Consensus       516 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  568 (625)
                        .+++++|..+|++..+.+   ++..+..|+..|..    .+++++|...|+++.+.+
T Consensus       378 g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          378 GVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence              899999999999999865   67788899999988    899999999999999954

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.89  E-value=2.3e-17  Score=170.58  Aligned_cols=505  Identities=13%  Similarity=0.128  Sum_probs=305.2

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC-hhHHHH---------HHHHHHHhcCCCCHH
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL-VVHVSR---------ILELIEIQKCYCPED   74 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~---------~~~~~~~~~~~~~~~   74 (625)
                      ..+|....-+.+++..-+..++.-+...  ..++.++.+++..|...++ ++.-++         +=+-..+++|...--
T Consensus       842 ~~~lv~~~ekrnrLkll~p~LE~~~~~g--~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~i  919 (1630)
T 1xi4_A          842 TDELVAEVEKRNRLKLLLPWLEARIHEG--CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACV  919 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHH
Confidence            4566666666677777777777755554  7889999999999987554 333211         222222232211000


Q ss_pred             HH------HHHHHHHHccCCchHHHHHH-HHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCC--CCCHhHHHHHHHHH
Q 038112           75 VA------LSVIQAYGKNSMPDKALDVF-QRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGL--KPDVYSYGTVINGL  145 (625)
Q Consensus        75 ~~------~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~  145 (625)
                      .|      .-+++...+.+.|+..-+++ ++.    ....+...-..+-+-=+.+.++.....+  ..++.--...+++|
T Consensus       920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~----d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf  995 (1630)
T 1xi4_A          920 AYERGQCDLELINVCNENSLFKSLSRYLVRRK----DPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAF  995 (1630)
T ss_pred             HhcccCCcHHHHHHHhcchhHHHHHHHHHHhc----CHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHH
Confidence            00      12333444444443322211 110    0000010001111111122222211111  12223334456667


Q ss_pred             HhcCChhhHHHHHHHHHhCCC--CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChh
Q 038112          146 VKSGDLLGALAVFDEMFERGV--ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFD  223 (625)
Q Consensus       146 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  223 (625)
                      ...|.+.+|+++++++.-.+.  .-+...-+.++.+..+. +..+..+....+..        .....+...+...|.++
T Consensus       996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A          996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFE 1066 (1630)
T ss_pred             HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHH
Confidence            778888888888888773311  12234444455555555 44555555544321        11344667777788888


Q ss_pred             hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          224 ECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMG  303 (625)
Q Consensus       224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  303 (625)
                      +|..+|++..     ........++.   ..+++++|.++.++.      -++.+|..++.++...|++++|++.|.+. 
T Consensus      1067 EAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1067 EAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            8888887752     12222222222   567788888777754      15677778888888888888888888554 


Q ss_pred             hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 038112          304 RKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAA  383 (625)
Q Consensus       304 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~  383 (625)
                          .+...|..++.++.+.|++++|++.+...++...  ++.....++.+|.+.++++.....+.              
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI~-------------- 1191 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------------- 1191 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHHh--------------
Confidence                4777777788888888888888888877776642  22223347777777777765333322              


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 038112          384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG  463 (625)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  463 (625)
                                 .++...+..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++..   
T Consensus      1192 -----------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A         1192 -----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred             -----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence                       234556667888888888888888888774         367888888888888888888888762   


Q ss_pred             CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112          464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT  543 (625)
Q Consensus       464 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  543 (625)
                         +..+|..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +.....|+.
T Consensus      1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A         1249 ---STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred             ---CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence               5577888888888888888887766542     3356667788888888888888888888877653 334556666


Q ss_pred             HHHHHHcc--CChhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhhcCChHHHH
Q 038112          544 LMDGLFKT--GDCDKALEIWNHILEERLRP------DIISYNITLKGLCSCSRMSDAF  593 (625)
Q Consensus       544 l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~  593 (625)
                      |+..+.+.  ++..++.++|..-..  ++|      +...|..++..|.+.|+++.|.
T Consensus      1320 LaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1320 LAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            66666653  455556666554443  333      4466777888888888888877

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.89  E-value=4.6e-18  Score=168.87  Aligned_cols=394  Identities=13%  Similarity=0.040  Sum_probs=307.8

Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh----cCChhHHHH
Q 038112          120 KRFLNSLWEKGLKPDVYSYGTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK----KGDYMRAKE  191 (625)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~  191 (625)
                      ...+++....+   ++..+..+...+..    .++++.|...|++..+.|   ++..+..+...|..    .+++++|.+
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~  100 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI  100 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            34444444443   67777888888877    789999999999988774   56788888888888    889999999


Q ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 038112          192 IWERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK----AGNVEGAERV  263 (625)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~  263 (625)
                      .|++..+.+    +...+..+...|..    .+++++|+..|++..+.+   ++..+..+...|..    .+++++|++.
T Consensus       101 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  173 (490)
T 2xm6_A          101 WYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW  173 (490)
T ss_dssp             HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999988754    56677788888888    789999999999888754   56677778888877    7899999999


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 038112          264 YREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE----NGKVDEAISIWEL  335 (625)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~  335 (625)
                      |++..+.+   +...+..+...|..    .+++++|.++|+.....+  ++.++..+...+..    .+++++|..+|++
T Consensus       174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            99998874   67888888888887    889999999999988764  67788888888886    7899999999999


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112          336 LREKNCNADSTTHGVLINGLCK----NGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA  411 (625)
Q Consensus       336 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  411 (625)
                      ..+.+   +...+..+...+..    .+++++|...+++                  ....+   ++..+..+...|...
T Consensus       249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~------------------a~~~~---~~~a~~~Lg~~y~~~  304 (490)
T 2xm6_A          249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRK------------------SAEQG---NSDGQYYLAHLYDKG  304 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH------------------HHTTT---CHHHHHHHHHHHHHC
T ss_pred             HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH------------------HHHcC---CHHHHHHHHHHHHcC
Confidence            88774   55666677777777    7888888888884                  33332   455667777888877


Q ss_pred             -----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc---
Q 038112          412 -----SKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVE---RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ---  480 (625)
Q Consensus       412 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  480 (625)
                           +++++|...|++..+.+   +...+..+...|...|   ++++|+.++++..+.+   +...+..+...|..   
T Consensus       305 ~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g  378 (490)
T 2xm6_A          305 AEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG  378 (490)
T ss_dssp             BTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             CCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence                 89999999999998864   5567777777777656   7899999999999863   67788888888888   


Q ss_pred             -cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCC
Q 038112          481 -SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRNCV-P-NLVTYNTLMDGLFKTGD  553 (625)
Q Consensus       481 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~  553 (625)
                       .+++++|...|++..+.+   +...+..+..+|..    .+++++|..+|++..+.+.. | +......++..+..  +
T Consensus       379 ~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~  453 (490)
T 2xm6_A          379 VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--Q  453 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--H
T ss_pred             CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--H
Confidence             899999999999999865   57788889999988    89999999999999987532 2 44455555444332  3


Q ss_pred             hhHHHHHHHHHHH
Q 038112          554 CDKALEIWNHILE  566 (625)
Q Consensus       554 ~~~A~~~~~~~~~  566 (625)
                      .+.+.+...+..+
T Consensus       454 ~~~a~~~a~~~~~  466 (490)
T 2xm6_A          454 LQQAELLSQQYIE  466 (490)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3444444444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=1.3e-20  Score=177.57  Aligned_cols=288  Identities=8%  Similarity=-0.044  Sum_probs=174.6

Q ss_pred             CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhc
Q 038112           34 YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRK  113 (625)
Q Consensus        34 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  113 (625)
                      .+.++..+..++..+...|++++|.++++.+++..| .+...+..++.++...|++++|...++++.+..|.        
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------   88 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--------   88 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--------
Confidence            366677778888888888888888888888888764 45667777777777888888888888877554433        


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEI  192 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  192 (625)
                                          +...+..+...+...| ++++|...|+++.+.. +.+...|..++.++...|++++|+..
T Consensus        89 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  147 (330)
T 3hym_B           89 --------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA  147 (330)
T ss_dssp             --------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             --------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence                                3444555555555555 5666666666655543 22445555566666666666666666


Q ss_pred             HHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 038112          193 WERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESG-  271 (625)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  271 (625)
                      ++++.+..  +.+...+..+...+...|++++|...+++..+..+ .+...+..++..+...|++++|...++++.+.. 
T Consensus       148 ~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  224 (330)
T 3hym_B          148 YFTAAQLM--KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK  224 (330)
T ss_dssp             HHHHHHHT--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhc--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence            66655542  23344455555666666666666666666555432 344555556666666666666666666555421 


Q ss_pred             -------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 038112          272 -------IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD  344 (625)
Q Consensus       272 -------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  344 (625)
                             .+....++..++.++...|++++|.+.++.+....+.+..++..+..++...|++++|...++++.+..+. +
T Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~  303 (330)
T 3hym_B          225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-D  303 (330)
T ss_dssp             TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-C
T ss_pred             hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-c
Confidence                   02234555666666666666666666666666665556666666666666666666666666666554322 4


Q ss_pred             hhhHHHHHHHH
Q 038112          345 STTHGVLINGL  355 (625)
Q Consensus       345 ~~~~~~l~~~~  355 (625)
                      ...+..+..++
T Consensus       304 ~~~~~~l~~~~  314 (330)
T 3hym_B          304 TFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            44444555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=2.5e-20  Score=175.62  Aligned_cols=286  Identities=10%  Similarity=-0.052  Sum_probs=239.7

Q ss_pred             CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 038112           70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG  149 (625)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  149 (625)
                      +.+..++..++..+...|++++|..+|+++...                           + +.+...+..++..+...|
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------~-p~~~~~~~~~~~~~~~~~   70 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---------------------------D-PFHASCLPVHIGTLVELN   70 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------------C-TTCTTTHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------C-CCChhhHHHHHHHHHHhh
Confidence            346667777787777788888888888777442                           2 345556677778889999


Q ss_pred             ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112          150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG-DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      ++++|...++++.+.. +.+...+..++..+...| ++++|.+.|+++.+..  +.+...|..++.++...|++++|+..
T Consensus        71 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~  147 (330)
T 3hym_B           71 KANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAA  147 (330)
T ss_dssp             CHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999999874 347888999999999999 9999999999998864  55677899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG--  306 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--  306 (625)
                      ++++.+..+ .+...+..+...+...|++++|...++++.+..+ .+...+..++..+...|++++|...++.+....  
T Consensus       148 ~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  225 (330)
T 3hym_B          148 YFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA  225 (330)
T ss_dssp             HHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence            999988754 3567788899999999999999999999998754 378899999999999999999999999988754  


Q ss_pred             -------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 038112          307 -------CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRL  379 (625)
Q Consensus       307 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  379 (625)
                             +....++..++.++...|++++|...++++.+..+. +...+..+...+...|++++|...++++....+...
T Consensus       226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence                   346789999999999999999999999999988544 677888999999999999999999999988877665


Q ss_pred             HHHHHHHHHH
Q 038112          380 ADAASLVNRM  389 (625)
Q Consensus       380 ~~a~~~~~~~  389 (625)
                      .....+-..+
T Consensus       305 ~~~~~l~~~~  314 (330)
T 3hym_B          305 FSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5444443333

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=1.9e-18  Score=173.42  Aligned_cols=431  Identities=12%  Similarity=0.029  Sum_probs=246.8

Q ss_pred             HHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112           25 FDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  104 (625)
                      |+.+++.+  |.+..+|..++.. .+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|+.+|+++.... 
T Consensus         2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-   76 (530)
T 2ooe_A            2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-   76 (530)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred             hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence            45556656  8888888888874 67889999999999998875 5578888888888888888888888888875433 


Q ss_pred             CCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChhhHHH----HHHHHHhC-CCCC-CchhhHHHH
Q 038112          105 CEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGL-VKSGDLLGALA----VFDEMFER-GVET-NVVCYNILI  177 (625)
Q Consensus       105 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~  177 (625)
                                                  |+...|..++... ...|+.+.|.+    +|++++.. |..| +...|...+
T Consensus        77 ----------------------------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~  128 (530)
T 2ooe_A           77 ----------------------------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI  128 (530)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred             ----------------------------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence                                        3444444444322 23344444433    44444332 2222 233444444


Q ss_pred             HHHHh---------cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112          178 DGFFK---------KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI  248 (625)
Q Consensus       178 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (625)
                      .....         .|++++|+.+|++.++.+ ..+....|..........|. ..+..++.                  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-~~~~~~~~~~~~~~e~~~~~-~~~~~~l~------------------  188 (530)
T 2ooe_A          129 NFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-MINIEQLWRDYNKYEEGINI-HLAKKMIE------------------  188 (530)
T ss_dssp             HHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC-CTTHHHHHHHHHHHHHHHCH-HHHHHHHH------------------
T ss_pred             HHHhcCCCcccHHHHhHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHhhch-hHHHHHHH------------------
Confidence            43332         456666666666665521 11101122221111000000 00000000                  


Q ss_pred             HHHHhcCCHHHHHHHHHHH------HHCC---CCcC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHH
Q 038112          249 HGLCKAGNVEGAERVYREM------VESG---IFVD--------AVTYNAMIDGFCRA----GKI----KECFELWEVMG  303 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~  303 (625)
                         ...+++..|..++..+      .+..   ++|+        ...|...+......    ++.    +.+..+|+++.
T Consensus       189 ---~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al  265 (530)
T 2ooe_A          189 ---DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL  265 (530)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred             ---HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence               0112233333333331      1110   1222        12333333222111    122    35666777777


Q ss_pred             hcCCCcHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038112          304 RKGCLNVVSYNILIRGLLE-------NGKVD-------EAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILN  369 (625)
Q Consensus       304 ~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  369 (625)
                      ...|.++..|..++..+..       .|+++       +|..++++....-.+.+...+..++..+...|++++|..+++
T Consensus       266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~  345 (530)
T 2ooe_A          266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN  345 (530)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            6666677777777776664       56665       677777777652122245666666777777777777777777


Q ss_pred             HHHhcCCCchHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HhccC
Q 038112          370 EVEEGGEGRLADAASLVNRMDKHGCKLN-AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING-LCKVE  447 (625)
Q Consensus       370 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  447 (625)
                      ++.                  .... .+ ..+|...+..+.+.|+++.|+.+|++..+... .+...|...+.. +...|
T Consensus       346 ~al------------------~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~  405 (530)
T 2ooe_A          346 RLL------------------AIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK  405 (530)
T ss_dssp             HHH------------------HSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred             HHh------------------Cccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence            432                  2211 12 24677777777777888888888888776522 123333322222 33578


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHcCCCHHHHHH
Q 038112          448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF-TP--DVTMYNILIHGLCSAGKVEDALQ  524 (625)
Q Consensus       448 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~  524 (625)
                      ++++|..+|++.++.. +.+...+..++..+.+.|+.++|..+|++.+..+. .|  ....|...+......|+.+.+..
T Consensus       406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~  484 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK  484 (530)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888877752 33567777888888888888888888888887532 22  24477777777778888888888


Q ss_pred             HHHHHHhC
Q 038112          525 LYSNMKKR  532 (625)
Q Consensus       525 ~~~~~~~~  532 (625)
                      ++.++.+.
T Consensus       485 ~~~r~~~~  492 (530)
T 2ooe_A          485 VEKRRFTA  492 (530)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=2.8e-18  Score=172.23  Aligned_cols=414  Identities=12%  Similarity=0.072  Sum_probs=241.3

Q ss_pred             HHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038112          124 NSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVY  203 (625)
Q Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  203 (625)
                      ++.+..+ |.+...|..++. +.+.|+++.|..+|+++.+. .|.+...|..++..+.+.|++++|..+|++++...   
T Consensus         3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---   76 (530)
T 2ooe_A            3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---   76 (530)
T ss_dssp             HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---
T ss_pred             hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---
Confidence            3444443 456667777776 35677777777777777766 34466677777777777777777777777777642   


Q ss_pred             CCcchHHHHHHHH-HhcCChhhHHH----HHHHHHhC-CCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 038112          204 PNVVTYNVMINGL-CKCGRFDECLE----MWDRMKKN-ERE-KDSFTYCSFIHGLCK---------AGNVEGAERVYREM  267 (625)
Q Consensus       204 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~  267 (625)
                      |+...|...+... ...|+.+.|.+    +|++.... |.. ++...|...+.....         .|+++.|..+|++.
T Consensus        77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a  156 (530)
T 2ooe_A           77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG  156 (530)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence            4555666655422 34566666554    55554432 322 234555555555443         56777777777777


Q ss_pred             HHCCCCcCHHHHHHHHHHH-------------HhcCCHHHHHHHHHHH------Hhc----CCCc--------HHHHHHH
Q 038112          268 VESGIFVDAVTYNAMIDGF-------------CRAGKIKECFELWEVM------GRK----GCLN--------VVSYNIL  316 (625)
Q Consensus       268 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~----~~~~--------~~~~~~l  316 (625)
                      ++.........|.......             ...+++..|..++...      ...    -++.        ...|...
T Consensus       157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~  236 (530)
T 2ooe_A          157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY  236 (530)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred             HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence            7631111122332222211             1234566777666652      221    1221        2456555


Q ss_pred             HHHHHhC----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhc
Q 038112          317 IRGLLEN----GKV----DEAISIWELLREKNCNADSTTHGVLINGLCK-------NGYLN-------KAIQILNEVEEG  374 (625)
Q Consensus       317 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~  374 (625)
                      +......    ++.    +.+..+|++.+...+ .+...|...+..+..       .|+++       +|..+++     
T Consensus       237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~-----  310 (530)
T 2ooe_A          237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE-----  310 (530)
T ss_dssp             HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH-----
T ss_pred             HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH-----
Confidence            5443332    232    467788888888743 367777777777664       67776       5666665     


Q ss_pred             CCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhccCCHHHH
Q 038112          375 GEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPT-V-VSYNTLINGLCKVERFGEA  452 (625)
Q Consensus       375 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a  452 (625)
                                   .....-.+.+...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|
T Consensus       311 -------------~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          311 -------------RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             -------------HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence                         3433222345677777777777788888888888887775  332 2 3666666666677777777


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          453 YSFVKEMLEKGWKPDMITYSLLING-LCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                      ..+|++..+.. +.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++..
T Consensus       376 ~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          376 RMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  453 (530)
T ss_dssp             HHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence            77777777641 1122222221111 224666777777777666542 23456666666666666777777777776666


Q ss_pred             CC-CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          532 RN-CVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       532 ~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .+ ..|+  ...|...+......|+.+.+..+++++.+
T Consensus       454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            42 1221  33565666666666676666666666665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=4.8e-20  Score=176.58  Aligned_cols=289  Identities=10%  Similarity=-0.023  Sum_probs=142.2

Q ss_pred             HccCChhHHHH-HHHhhccCCCCCC--CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCc
Q 038112           13 KAEKNPHTALA-LFDSATREPGYAH--SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMP   89 (625)
Q Consensus        13 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   89 (625)
                      ...|+++.|+. .|+.++......+  +...+..++..+...|++++|...|+.+++.. |.+..++..++.++...|++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            34566777776 6776665441111  23456667777777777777777777777665 34666666777777777777


Q ss_pred             hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 038112           90 DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN  169 (625)
Q Consensus        90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  169 (625)
                      ++|+..|+++...                           + +.+..++..+...+...|++++|+..++++.+..+. +
T Consensus       115 ~~A~~~~~~al~~---------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~  165 (368)
T 1fch_A          115 LLAISALRRCLEL---------------------------K-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-Y  165 (368)
T ss_dssp             HHHHHHHHHHHHH---------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-T
T ss_pred             HHHHHHHHHHHhc---------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-c
Confidence            7766666665332                           1 335566677777777777777777777777765322 2


Q ss_pred             chhhHHH---------------HHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          170 VVCYNIL---------------IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK  234 (625)
Q Consensus       170 ~~~~~~l---------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  234 (625)
                      ...+..+               +..+...|++++|+..++++.+..+..++..++..++.++...|++++|+..++++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  245 (368)
T 1fch_A          166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS  245 (368)
T ss_dssp             GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2222111               1112244455555555554444321111233444444444455555555555544443


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----
Q 038112          235 NEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN-----  309 (625)
Q Consensus       235 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----  309 (625)
                      ..+ .+..++..++..+...|++++|+..|+++++..+ .+..++..++.+|.+.|++++|...|+.+....|.+     
T Consensus       246 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  323 (368)
T 1fch_A          246 VRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  323 (368)
T ss_dssp             HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             hCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence            321 2334444444444444444444444444444321 134444444444444444444444444444333222     


Q ss_pred             ------HHHHHHHHHHHHhCCCHHHHHHHH
Q 038112          310 ------VVSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       310 ------~~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                            ..+|..+..++...|++++|..++
T Consensus       324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  353 (368)
T 1fch_A          324 EGGAMSENIWSTLRLALSMLGQSDAYGAAD  353 (368)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence                  344444444444444444444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=2.1e-19  Score=172.11  Aligned_cols=299  Identities=9%  Similarity=-0.012  Sum_probs=209.4

Q ss_pred             hcCChHHHHH-HHHHHHHCCC---CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh
Q 038112          112 RKRQFEKAKR-FLNSLWEKGL---KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM  187 (625)
Q Consensus       112 ~~~~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  187 (625)
                      -.|++++|.. .|++......   ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..++.++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence            3455556655 5554443321   1134556677777788888888888888887764 336667777888888888888


Q ss_pred             HHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHH---------------HHHHHH
Q 038112          188 RAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCS---------------FIHGLC  252 (625)
Q Consensus       188 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~  252 (625)
                      +|+..|+++.+..  +.+..++..++.++...|++++|+..++++....+. +...+..               .+..+.
T Consensus       116 ~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          116 LAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            8888888877753  446667777788888888888888888887766532 2222211               133334


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112          253 KAGNVEGAERVYREMVESGIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS  331 (625)
Q Consensus       253 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  331 (625)
                      ..|++++|...++++++..+.. +..++..++.++...|++++|+..++.+....|.+..++..++.++...|++++|+.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            8899999999999998864332 578888999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 038112          332 IWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQA  411 (625)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  411 (625)
                      .++++....+ .+...+..+...+...|++++|...++++....+....        ......+....+|..+..++...
T Consensus       273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~  343 (368)
T 1fch_A          273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEGGAMSENIWSTLRLALSML  343 (368)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------------CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC--------ccccccchhhHHHHHHHHHHHHh
Confidence            9999988753 36778888999999999999999999865431100000        00000112256777788888888


Q ss_pred             CCHHHHHHHHHH
Q 038112          412 SKLENAIFLFKE  423 (625)
Q Consensus       412 ~~~~~a~~~~~~  423 (625)
                      |+++.|..++.+
T Consensus       344 g~~~~A~~~~~~  355 (368)
T 1fch_A          344 GQSDAYGAADAR  355 (368)
T ss_dssp             TCGGGHHHHHTT
T ss_pred             CChHhHHHhHHH
Confidence            888887777653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=1.8e-19  Score=172.25  Aligned_cols=236  Identities=8%  Similarity=-0.034  Sum_probs=133.4

Q ss_pred             CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCCh
Q 038112           37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQF  116 (625)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  116 (625)
                      +...+..++..+.+.|++++|...|+.+++..| .+..++..++.++...|++++|+..|+++.+.              
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------  128 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLEL--------------  128 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence            344577777777777888888888888877753 46777777777777777777777777776432              


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchh----------hHHHHHHHHhcCCh
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC----------YNILIDGFFKKGDY  186 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~  186 (625)
                                   + +.+..++..+...+...|++++|+..|+++.+..+. +...          +..++.++...|++
T Consensus       129 -------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~  193 (365)
T 4eqf_A          129 -------------Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVL  193 (365)
T ss_dssp             -------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHH
T ss_pred             -------------C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhH
Confidence                         1 334666777777777777777777777777765321 1111          22235555555666


Q ss_pred             hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038112          187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE  266 (625)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  266 (625)
                      ++|++.++++.+..+...+..++..++..+...|++++|+..|+++.+..+ .+..++..++..+...|++++|+..|++
T Consensus       194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  272 (365)
T 4eqf_A          194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTR  272 (365)
T ss_dssp             HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666666665555431111344555555555555555555555555554432 2344555555555555555555555555


Q ss_pred             HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR  304 (625)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  304 (625)
                      +++..+. +..++..+..+|...|++++|...|+.+..
T Consensus       273 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          273 ALEIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5544221 344455555555555555555555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=7.8e-18  Score=167.05  Aligned_cols=352  Identities=11%  Similarity=-0.061  Sum_probs=257.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccC-------CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC-------C
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATRE-------PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC-------Y   70 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~   70 (625)
                      .+.|+.++..+|++++|+..|+.+++.       ...|....+|..++.+|...|++++|...++++++...       +
T Consensus        54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~  133 (472)
T 4g1t_A           54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI  133 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence            367899999999999999999988653       12366678889999999999999999999999987421       1


Q ss_pred             CCHHHHHHHHHHHHc--cCCchHHHHHHHHhHHhhCCCcch----------hhhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 038112           71 CPEDVALSVIQAYGK--NSMPDKALDVFQRMNEIFGCEAGI----------LCRKRQFEKAKRFLNSLWEKGLKPDVYSY  138 (625)
Q Consensus        71 ~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  138 (625)
                      ....++...+.++..  .+++++|+..|+++....|..+.+          +...++.++|+..|+++++.+ +.+..++
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~  212 (472)
T 4g1t_A          134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLK  212 (472)
T ss_dssp             CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHH
Confidence            245667666665554  457999999999999999888776          234577889999999998876 5566777


Q ss_pred             HHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112          139 GTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN  214 (625)
Q Consensus       139 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  214 (625)
                      ..+...+..    .+++++|...+++..... +.+..++..++..+...|++++|+..++++.+..  |.+..++..+..
T Consensus       213 ~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~  289 (472)
T 4g1t_A          213 VLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGC  289 (472)
T ss_dssp             HHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHH
Confidence            666655554    467889999999998874 3477889999999999999999999999998863  445566777766


Q ss_pred             HHHhc-------------------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038112          215 GLCKC-------------------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD  275 (625)
Q Consensus       215 ~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  275 (625)
                      +|...                   +.++.|...+++.....+ .+..++..+...+...|++++|+..|++.++..+.+.
T Consensus       290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~  368 (472)
T 4g1t_A          290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV  368 (472)
T ss_dssp             HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCCh
Confidence            65432                   335678888888776654 4677888999999999999999999999998754433


Q ss_pred             HH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 038112          276 AV--TYNAMID-GFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLI  352 (625)
Q Consensus       276 ~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  352 (625)
                      ..  .+..+.. .....|++++|+..|++.....+.+......          ...+..+++.....++. +..++..+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~-~~~~~~~LG  437 (472)
T 4g1t_A          369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLSKNGA-DSEALHVLA  437 (472)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHHHCC--CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            21  2233332 2457799999999999999887765433221          23445566666666433 778899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 038112          353 NGLCKNGYLNKAIQILNEVE  372 (625)
Q Consensus       353 ~~~~~~~~~~~a~~~~~~~~  372 (625)
                      .+|...|++++|++.+++..
T Consensus       438 ~~~~~~g~~~~A~~~y~kAL  457 (472)
T 4g1t_A          438 FLQELNEKMQQADEDSERGL  457 (472)
T ss_dssp             HHHHHHHHCC----------
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.9e-17  Score=162.05  Aligned_cols=384  Identities=15%  Similarity=-0.008  Sum_probs=221.9

Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHHHHhC----C---CCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-----C
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWERLVME----T---SVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-----E  236 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~  236 (625)
                      ....|+.++..+...|++++|++.|++..+.    .   ..+....+|+.+..+|...|++++|...+++....     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3456777777788888888888888776542    0   01223346777777777888888887777766531     1


Q ss_pred             C--CCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCc
Q 038112          237 R--EKDSFTYCSFIHGLCK--AGNVEGAERVYREMVESGIFVDAVTYNAMIDGF---CRAGKIKECFELWEVMGRKGCLN  309 (625)
Q Consensus       237 ~--~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~  309 (625)
                      .  .....++..+..++..  .+++++|+..|++.++..+. ++..+..+..++   ...++.++|++.+++.....|.+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~  208 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN  208 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence            0  1123445544444443  34577777777777765432 444554444443   34466677777777777777777


Q ss_pred             HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 038112          310 VVSYNILIRGLLE----NGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASL  385 (625)
Q Consensus       310 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~  385 (625)
                      ..++..+...+..    .+++++|.+.+++.....+. +...+..+...+...|++++|...++++              
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~a--------------  273 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKA--------------  273 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHH--------------
Confidence            7766666655544    34566777777777666433 5556666777777777777777777632              


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 038112          386 VNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWK  465 (625)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  465 (625)
                          .... +.+..++..+..+|...+....         ... ...      ........+.++.|...+++..+.. +
T Consensus       274 ----l~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~  331 (472)
T 4g1t_A          274 ----LEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKADEAN-D  331 (472)
T ss_dssp             ----HHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred             ----HHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence                2221 2244555555554432111000         000 000      0000111234567888888877752 3


Q ss_pred             CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112          466 PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDV--TMYNILIH-GLCSAGKVEDALQLYSNMKKRNCVPNLVTYN  542 (625)
Q Consensus       466 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  542 (625)
                      .+...+..+...+...|++++|...|++.++....+..  ..+..++. .+...|++++|+..|++..+.  .|+.....
T Consensus       332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~  409 (472)
T 4g1t_A          332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE  409 (472)
T ss_dssp             TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH
T ss_pred             chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH
Confidence            45567788888899999999999999998886433322  12333333 234778999999999998884  45533222


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRG  603 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  603 (625)
                      .         ....+.+++++.++  ..| +..++..++.+|...|++++|++.|++.++.+
T Consensus       410 ~---------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          410 K---------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             H---------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             H---------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            2         22345566666666  445 66888999999999999999999999998753

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=3.2e-19  Score=170.46  Aligned_cols=265  Identities=12%  Similarity=-0.032  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038112          277 VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLC  356 (625)
Q Consensus       277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  356 (625)
                      ..+..++..+.+.|++++|+..|+.+....|.+..++..++.++...|++++|+..|+++....+. +...+..+...+.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  144 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT  144 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence            335555566666666666666666666655556666666666666666666666666655554322 3444444444444


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------
Q 038112          357 KNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS------  430 (625)
Q Consensus       357 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------  430 (625)
                                                                           ..|++++|...|+++.+..+.      
T Consensus       145 -----------------------------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~  171 (365)
T 4eqf_A          145 -----------------------------------------------------NTSHQQDACEALKNWIKQNPKYKYLVK  171 (365)
T ss_dssp             -----------------------------------------------------HTTCHHHHHHHHHHHHHHCHHHHCC--
T ss_pred             -----------------------------------------------------ccccHHHHHHHHHHHHHhCccchHHHh
Confidence                                                                 444455554444444432110      


Q ss_pred             ---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038112          431 ---PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWK-PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMY  506 (625)
Q Consensus       431 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  506 (625)
                         .....+..+...+...|++++|..+++++.+.... ++..++..++..+...|++++|...++++++.. +.+..++
T Consensus       172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  250 (365)
T 4eqf_A          172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLW  250 (365)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence               11223445577788899999999999998886321 157788899999999999999999999998864 4568899


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-------------H
Q 038112          507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-------------I  573 (625)
Q Consensus       507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~  573 (625)
                      ..++.+|...|++++|...|+++.+. .+.+..++..++.+|...|++++|...|+++++  +.|+             .
T Consensus       251 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~  327 (365)
T 4eqf_A          251 NRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRYNLGISCINLGAYREAVSNFLTALS--LQRKSRNQQQVPHPAISG  327 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--HHHCC------------C
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccCCCcccchhhhHH
Confidence            99999999999999999999999986 244688999999999999999999999999988  3332             5


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          574 ISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       574 ~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      .+|..+..++...|+.+.+.+..++-
T Consensus       328 ~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          328 NIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            77889999999999999888877653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=2.3e-17  Score=152.79  Aligned_cols=246  Identities=13%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      +..++...|++++|..+++..       +.+.+|..++.++.+.|++++|++.|.+.      ++...+..++..+...|
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g   75 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG   75 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence            445556677888888888874       22458888888888888888888888542      25567777777777777


Q ss_pred             CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112           88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE  167 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  167 (625)
                      ++++|+.+++...                           +.  .+++.+...++.+|.+.|++.++.++++       .
T Consensus        76 ~~EeAi~yl~~ar---------------------------k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~  119 (449)
T 1b89_A           76 NWEELVKYLQMAR---------------------------KK--ARESYVETELIFALAKTNRLAELEEFIN-------G  119 (449)
T ss_dssp             --------------------------------------------------------------CHHHHTTTTT-------C
T ss_pred             CHHHHHHHHHHHH---------------------------Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C
Confidence            7777777666552                           21  2346667778888888888888777764       2


Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF  247 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (625)
                      |+..+|..++..|...|.+++|...|..+          ..|..++.++.+.|++++|.+.++++      .++.+|..+
T Consensus       120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v  183 (449)
T 1b89_A          120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV  183 (449)
T ss_dssp             C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence            56678888888888888888888888864          36888888888888888888888877      267788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLEN  323 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  323 (625)
                      +.+|...|+++.|......+     ...+.-...++..|.+.|.+++|+.+++......+.....|+.+...|++-
T Consensus       184 ~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          184 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            88888888888886554432     224444556777888888888888888888777766777777777777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=1.2e-18  Score=163.79  Aligned_cols=275  Identities=8%  Similarity=-0.061  Sum_probs=182.2

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      -.++..+...|++++|+..|+.+++..  |.++.++..++.++...|++++|.+.++++++.. |.+..++..++.++..
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence            467788889999999999999988877  7888999999999999999999999999999886 4477888889999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHH-HH-HHHhcCChhhHHHHHHHHHh
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTV-IN-GLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .|++++|...++++....|.....+.....               ..|+......+ .. .+...|++++|...++++.+
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  166 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQ---------------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE  166 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC-----------------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhH---------------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence            999999999999887765554433211100               00111111111 11 24455666666666666665


Q ss_pred             CCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh
Q 038112          164 RGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT  243 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  243 (625)
                      ..+ .+..++..++.++...|++++|...++.+.+..  +.+..++..++.++...|++++|...++++.+..+ .+..+
T Consensus       167 ~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~  242 (327)
T 3cv0_A          167 MNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRV  242 (327)
T ss_dssp             HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             hCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHH
Confidence            532 255566666666666666666666666666542  33455666666666677777777777766665442 34556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVESGIFV-----------DAVTYNAMIDGFCRAGKIKECFELWEVM  302 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~  302 (625)
                      +..+...+...|++++|...++++.+..+..           +...+..+..++...|++++|..+++..
T Consensus       243 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          243 MYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            6666677777777777777777666543221           3556666777777777777777766543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=1.2e-17  Score=156.93  Aligned_cols=265  Identities=9%  Similarity=-0.054  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh
Q 038112           73 EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL  152 (625)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  152 (625)
                      ...+...+..+...|++++|...|+++.+                           .. +.+...+..+...+...|+++
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------------------------~~-~~~~~~~~~l~~~~~~~~~~~   72 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQ---------------------------AA-PEREEAWRSLGLTQAENEKDG   72 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------------HC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHcCCHH
Confidence            34556667777777777777777776643                           22 346677788888888889999


Q ss_pred             hHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH--------------HH-HHH
Q 038112          153 GALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM--------------IN-GLC  217 (625)
Q Consensus       153 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~  217 (625)
                      +|...++++.+.. +.+..++..++.++...|++++|.+.++.+.+..  +.+...+..+              .. .+.
T Consensus        73 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (327)
T 3cv0_A           73 LAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFA  149 (327)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTT
T ss_pred             HHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence            9999888888874 3367788888888888899999999888888763  3333334333              33 477


Q ss_pred             hcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112          218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE  297 (625)
Q Consensus       218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  297 (625)
                      ..|++++|...++++.+..+ .+...+..++..+...|++++|...++++.+..+ .+..++..++.++...|++++|.+
T Consensus       150 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          150 APNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence            88999999999999987654 4778899999999999999999999999988743 367889999999999999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHH
Q 038112          298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA-----------DSTTHGVLINGLCKNGYLNKAIQ  366 (625)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~  366 (625)
                      .++.+....|.+..++..++.++...|++++|...++++....+..           +...+..+..++...|+++.|..
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999988899999999999999999999999999998875432           46678888999999999999998


Q ss_pred             HHHH
Q 038112          367 ILNE  370 (625)
Q Consensus       367 ~~~~  370 (625)
                      ++++
T Consensus       308 ~~~~  311 (327)
T 3cv0_A          308 TYAQ  311 (327)
T ss_dssp             HTTC
T ss_pred             HHHH
Confidence            8863

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=6.1e-18  Score=154.21  Aligned_cols=198  Identities=14%  Similarity=0.104  Sum_probs=119.2

Q ss_pred             CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112          133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV-ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV  211 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  211 (625)
                      |+..++..+...+...++.++|++.++++...+. |.++..+..++..+...|++++|++.+++       +.+...+..
T Consensus        63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~  135 (291)
T 3mkr_A           63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM  135 (291)
T ss_dssp             HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred             hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence            3444555555555556666666666666655442 22344455555666666666666666554       234555666


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTY---CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      ++.++.+.|++++|.+.|+++.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+
T Consensus       136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~  212 (291)
T 3mkr_A          136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA  212 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence            6666666666666666666665543  222111   112223334467777777777777653 3366677777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHcC
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE-AISIWELLREKN  340 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~  340 (625)
                      .|++++|.+.|+++....|.++.++..++..+...|+.++ +.++++++.+..
T Consensus       213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            7777777777777777777777777777777777777654 456777776663

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=4.9e-18  Score=157.20  Aligned_cols=282  Identities=12%  Similarity=0.108  Sum_probs=85.6

Q ss_pred             hcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHH
Q 038112          147 KSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECL  226 (625)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  226 (625)
                      +.|+.++|.+.++++.      ++.+|..++.++.+.|++++|++.|.+.       +|...|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            3444555555555541      2235555555555555555555555331       34445555555555555555555


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112          227 EMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKG  306 (625)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  306 (625)
                      ..++..++.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|.+++|..+|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            555444432  2334445555555555555555555443       134445555566666666666666665544    


Q ss_pred             CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112          307 CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV  386 (625)
Q Consensus       307 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~  386 (625)
                          ..|..++.++.+.|++++|++.++++      .++.+|..++.+|...|+++.|.....                 
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l-----------------  201 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL-----------------  201 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT-----------------
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH-----------------
Confidence                24555666666666666666665555      145556666666666666666533221                 


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc--CCHHHHHHHHHHHHHCCC
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV--ERFGEAYSFVKEMLEKGW  464 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~  464 (625)
                            .+...+.-...++..|.+.|.+++|..+++...... +.....|..+..+|++-  ++..+.++.|..-+  ++
T Consensus       202 ------~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni  272 (449)
T 1b89_A          202 ------HIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NI  272 (449)
T ss_dssp             ------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CH
T ss_pred             ------HHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cC
Confidence                  011222223345556666666666666666655443 22344555554444432  23333333332111  11


Q ss_pred             CC------CHhhHHHHHHHHhccCCHHHHHHH
Q 038112          465 KP------DMITYSLLINGLCQSKKIDMALKL  490 (625)
Q Consensus       465 ~~------~~~~~~~l~~~~~~~~~~~~A~~~  490 (625)
                      +|      +...|..++..|.+.++++.|...
T Consensus       273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            11      234555666666666666666543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=7.5e-17  Score=147.01  Aligned_cols=164  Identities=12%  Similarity=0.066  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhH---HHHH
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITY---SLLI  475 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~  475 (625)
                      ..+..+...+...|++++|.+.+++      +.+...+..++..+.+.|++++|...++++.+.  .|+....   ..++
T Consensus       102 ~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~  173 (291)
T 3mkr_A          102 TFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWV  173 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHH
Confidence            3344444445555555555555544      234445555555566666666666666665553  2332111   1122


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChh
Q 038112          476 NGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCD  555 (625)
Q Consensus       476 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  555 (625)
                      ..+...|++++|..+|+++.+.. +.+...++.++.++...|++++|...++++.+.. +.++.++..++.++...|+.+
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCH
Confidence            22334466777777777776652 4466677777777777777777777777776642 445667777777777777765


Q ss_pred             H-HHHHHHHHHHcCCCCCHH
Q 038112          556 K-ALEIWNHILEERLRPDII  574 (625)
Q Consensus       556 ~-A~~~~~~~~~~~~~p~~~  574 (625)
                      + +.++++++++  +.|+..
T Consensus       252 eaa~~~~~~~~~--~~P~~~  269 (291)
T 3mkr_A          252 EVTNRYLSQLKD--AHRSHP  269 (291)
T ss_dssp             HHHHHHHHHHHH--HCTTCH
T ss_pred             HHHHHHHHHHHH--hCCCCh
Confidence            4 4567777776  566543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=2.8e-16  Score=153.20  Aligned_cols=256  Identities=10%  Similarity=-0.013  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112          310 VVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNG---YLNKAIQILNEVEEGGEGRLADAASLV  386 (625)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~a~~~~  386 (625)
                      +.++..+...|...+.++++......+.+.-...++..+..+...|...|   ++++|...++                 
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~-----------------  203 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME-----------------  203 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH-----------------
Confidence            44444555555555433333322222221111113335555555666666   5555655555                 


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--hccCCHHHHHHHHHHH
Q 038112          387 NRMDKHGCKLNAYTCNSLMNGFIQA----SKLENAIFLFKEMSRKGCSPTVVSYNTLING-L--CKVERFGEAYSFVKEM  459 (625)
Q Consensus       387 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~  459 (625)
                       .....+ +++...+..+...|...    +++++|...|++.. .   .++..+..+... +  ...+++++|+.+|++.
T Consensus       204 -~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A  277 (452)
T 3e4b_A          204 -AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNG  277 (452)
T ss_dssp             -HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred             -HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence             233333 22344444555555544    68888888888877 2   355666666665 3  4578889999999988


Q ss_pred             HHCCCCCCHhhHHHHHHHHhccC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 038112          460 LEKGWKPDMITYSLLINGLCQSK-----KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMK  530 (625)
Q Consensus       460 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  530 (625)
                      .+.|   +...+..+...|. .|     ++++|...|++.. .   .+...+..|..+|..    ..++++|..+|++..
T Consensus       278 a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  349 (452)
T 3e4b_A          278 RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA  349 (452)
T ss_dssp             HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            8765   5666677777666 44     8899999988877 3   366777778877766    348899999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          531 KRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       531 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      +.|   +......|+.+|..    ..++++|..+|+.+.+.|. ++.......+......++..+|.++.++..
T Consensus       350 ~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          350 RNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             TTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             hhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            865   45566677877764    4588899999999888652 222222222222233355666777776654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.76  E-value=2.3e-16  Score=153.87  Aligned_cols=48  Identities=10%  Similarity=-0.024  Sum_probs=21.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 038112          483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRN  533 (625)
Q Consensus       483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  533 (625)
                      ++++|...|++..+.|   +......|..+|..    ..++.+|..+|+...+.|
T Consensus       337 d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g  388 (452)
T 3e4b_A          337 YPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD  388 (452)
T ss_dssp             CHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence            4455555555544433   12223334444432    234555555555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=7.5e-17  Score=145.71  Aligned_cols=221  Identities=14%  Similarity=0.036  Sum_probs=160.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALSV   79 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l   79 (625)
                      ..++.++...|++++|+..|+.+++..   .++.++..++.++...|++++|.+.++.+++..+...      ..++..+
T Consensus         9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            9 KAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            567888889999999999999988765   6678889999999999999999999999988764322      5788889


Q ss_pred             HHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           80 IQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        80 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      +.++...|++++|...|+++....+. ..++...|++++|...++++.... +.+...+..+...+...|++++|...|+
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRT-ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCch-hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999988765443 445667777777777777777654 3445566666666777777777777777


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKK  234 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  234 (625)
                      ++.+..+ .+..++..++.++...|++++|...++.+.+..  +.+..++..+..++...|++++|...+++..+
T Consensus       164 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          164 EMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7766532 255666666666666777777777666666542  33445566666666666666666666666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=8.3e-17  Score=140.22  Aligned_cols=204  Identities=14%  Similarity=-0.007  Sum_probs=131.2

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++.++..+|++++|+..|+.+++.+  |.++.++..++.++.+.|++++|+..++++++.+| .+...+..++.++..
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            456677778888888888888888777  77888888888888888888888888888888763 467777777777766


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      .+...                .......|++++|+..|+++++.+ |.+...+..+..++...|++++|+..|+++.+..
T Consensus        86 ~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A           86 LYRQA----------------EDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHTC----------------SSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhhhh----------------hhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            51000                001112244445555555545543 4456677777777777888888888888877776


Q ss_pred             CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112          166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK  233 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  233 (625)
                        .++..+..++.++...|++++|+..|+++.+..  |.+...+..+..++...|++++|+..|++..
T Consensus       149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred             --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence              467777777777778888888888887777653  4455667777777777777777777776553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=2.1e-16  Score=137.64  Aligned_cols=201  Identities=15%  Similarity=0.081  Sum_probs=149.1

Q ss_pred             CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112          132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV  211 (625)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  211 (625)
                      |++...+..+...+.+.|++++|+..|+++++..+ .++..+..++.++.+.|++++|+..+++..+..  |.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence            56677788888888888888888888888887743 367788888888888888888888888888763  455667888


Q ss_pred             HHHHHHhc-----------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 038112          212 MINGLCKC-----------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYN  280 (625)
Q Consensus       212 l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  280 (625)
                      +..++...           |++++|+..+++..+..+ .+...+..+...+...|++++|+..|++.++..  .++..+.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            88888888           888888888888877654 356777788888888888888888888888776  5778888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 038112          281 AMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE  338 (625)
Q Consensus       281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  338 (625)
                      .+..++...|++++|+..|+.+....|.+..++..+..++...|++++|+..+++...
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            8888888888888888888888888888888888888888888888888888776543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=1e-15  Score=144.06  Aligned_cols=253  Identities=9%  Similarity=-0.006  Sum_probs=195.4

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCC-chHHHHHHHHhHHhhCCCcchhhhc
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSM-PDKALDVFQRMNEIFGCEAGILCRK  113 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~  113 (625)
                      |.++.++..++.++...|++++|++.++++++.+| .+..++..++.++...|+ +++|+..|+++...           
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-----------  161 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----------  161 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-----------
Confidence            45567888888889999999999999999999874 488889999999988886 88888888877542           


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                                      + +.+..+|..+..++...|++++|+..|+++++.++. +...|..+..++...|++++|+..|
T Consensus       162 ----------------~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~  223 (382)
T 2h6f_A          162 ----------------Q-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYV  223 (382)
T ss_dssp             ----------------C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             ----------------C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHH
Confidence                            2 346777888888888888888888888888887543 7778888888888888888888888


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHh-cCChhhH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHH
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCK-CGRFDEC-----LEMWDRMKKNEREKDSFTYCSFIHGLCKAG--NVEGAERVYR  265 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~  265 (625)
                      +++++..  +.+..+|+.+..++.. .|..++|     +..+++.+...+ .+...|..+...+...|  ++++|++.+.
T Consensus       224 ~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~  300 (382)
T 2h6f_A          224 DQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLL  300 (382)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence            8888863  5567788888888888 5555777     477777776654 36667777777777777  5788888887


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHh
Q 038112          266 EMVESGIFVDAVTYNAMIDGFCRAG---------KIKECFELWEVM-GRKGCLNVVSYNILIRGLLE  322 (625)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~  322 (625)
                      ++ +.. +.+...+..++.+|.+.|         .+++|+++++.+ .+.+|.....|..+...+..
T Consensus       301 ~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          301 DL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             Hh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            77 332 335677778888887764         257888888888 77777777788777665543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=1.4e-15  Score=143.13  Aligned_cols=245  Identities=11%  Similarity=0.011  Sum_probs=190.2

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKL-VVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      ..++.++..+|++++|+..|+.+++.+  |.+..+|..++.++...|+ +++|+..|++++..+| .+..+|..++.++.
T Consensus       101 ~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~  177 (382)
T 2h6f_A          101 DYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence            567888999999999999999999988  9999999999999999997 9999999999999975 58899999999999


Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                      ..|++++|+..|+++....                            +.+..+|..+..++...|++++|+..|+++++.
T Consensus       178 ~~g~~~eAl~~~~kal~ld----------------------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          178 WLRDPSQELEFIADILNQD----------------------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhC----------------------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9999999999999885533                            346677777888888888888888888888877


Q ss_pred             CCCCCchhhHHHHHHHHh-cCChhHH-----HHHHHHHHhCCCCCCCcchHHHHHHHHHhcC--ChhhHHHHHHHHHhCC
Q 038112          165 GVETNVVCYNILIDGFFK-KGDYMRA-----KEIWERLVMETSVYPNVVTYNVMINGLCKCG--RFDECLEMWDRMKKNE  236 (625)
Q Consensus       165 ~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~  236 (625)
                      ++. +...|+.+..++.. .|..++|     ++.|++.+...  +.+..+|+.+..++...|  ++++|++.+.++ +..
T Consensus       230 ~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~  305 (382)
T 2h6f_A          230 DVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS  305 (382)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred             CCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence            543 67778888888877 5554666     47777777653  455667888887788777  578888888777 332


Q ss_pred             CCCChhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHH
Q 038112          237 REKDSFTYCSFIHGLCKAG---------NVEGAERVYREM-VESGIFVDAVTYNAMIDGFC  287 (625)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~  287 (625)
                       +.+...+..++.+|...|         ..++|+++|+++ .+..+ .....|..+...+.
T Consensus       306 -p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          306 -HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ  364 (382)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence             345667777777777763         257888888888 55432 24455555555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=3.1e-15  Score=135.03  Aligned_cols=230  Identities=13%  Similarity=0.074  Sum_probs=125.3

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNR  388 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~  388 (625)
                      ....+..++..+...|++++|+..|+++.+..  .+...+..+...+...|++++|...++++...              
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------   67 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ--------------   67 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------------
Confidence            34566667777777777777777777777765  46667777777777777777777777743321              


Q ss_pred             HhhCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 038112          389 MDKHG--CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP  466 (625)
Q Consensus       389 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  466 (625)
                      ....+  .+....++..+...+...|++++|...|+++....  |+.       ..+...|++++|...++++.... +.
T Consensus        68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~  137 (258)
T 3uq3_A           68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PE  137 (258)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HH
T ss_pred             CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cc
Confidence            00100  00014566777777777778888877777777642  231       22334455555555555555431 11


Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD  546 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  546 (625)
                      +...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~  215 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT  215 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHH
Confidence            23344444444555555555555555554432 2234444444444555555555555555444431 223444444444


Q ss_pred             HHHccCChhHHHHHHHHHHH
Q 038112          547 GLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ++...|++++|...++++++
T Consensus       216 ~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          216 AQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            45555555555554444444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.71  E-value=2.7e-15  Score=136.58  Aligned_cols=253  Identities=11%  Similarity=0.015  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChH
Q 038112           38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFE  117 (625)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  117 (625)
                      +..+...+..+...|++++|...|+.+++..| .+...+..++.++...|++++|+..|+++.. .+.            
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~------------   68 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVN------------   68 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSC------------
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccC------------
Confidence            34445556666666666666666666666543 2444556666666666666666666655532 110            


Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHH
Q 038112          118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLV  197 (625)
Q Consensus       118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  197 (625)
                                  +.......|..+...+...|++++|+..|+++.+..+ .+..++..++.++...|++++|+..+++..
T Consensus        69 ------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  135 (272)
T 3u4t_A           69 ------------ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI  135 (272)
T ss_dssp             ------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred             ------------chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence                        0011123355566666666666666666666666532 245566666666666666666666666665


Q ss_pred             hCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CC
Q 038112          198 METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN---VEGAERVYREMVESG-IF  273 (625)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~  273 (625)
                      +.  .+.+...+..+...+...+++++|.+.|+++.+..+ .+...+..+...+...|+   +++|...++++.+.. ..
T Consensus       136 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  212 (272)
T 3u4t_A          136 RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG  212 (272)
T ss_dssp             CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred             hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence            54  233444555555233334466666666666665432 234555556666666565   556666666655431 01


Q ss_pred             cC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 038112          274 VD------AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGL  320 (625)
Q Consensus       274 ~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  320 (625)
                      |+      ..++..+...|...|++++|.+.|+++....|.+..++..+....
T Consensus       213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~  265 (272)
T 3u4t_A          213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL  265 (272)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence            12      145556666777777777777777777777666666665554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.70  E-value=1.4e-14  Score=131.86  Aligned_cols=240  Identities=14%  Similarity=0.033  Sum_probs=163.4

Q ss_pred             chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--hhhHHHH
Q 038112          170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKD--SFTYCSF  247 (625)
Q Consensus       170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l  247 (625)
                      +..+...+..+...|++++|+..|+.+.+..  +.+...+..++.++...|++++|+..+++.......++  ...|..+
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            3455666777777777777777777777653  34455677777777777777777777777776321111  1236777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                      ...+...|++++|+..|+++.+..+. +..++..++.+|...|++++|++.+++.....|.+..++..+...+...++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            77777888888888888877776433 56777778888888888888888888887777777788887773444455888


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCc----cHHH
Q 038112          328 EAISIWELLREKNCNADSTTHGVLINGLCKNGY---LNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKL----NAYT  400 (625)
Q Consensus       328 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~  400 (625)
                      +|...|+++.+..+. +...+..+...+...|+   ++.|...++++..               +......+    ...+
T Consensus       160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---------------~~~~~~~~~~~~~~~~  223 (272)
T 3u4t_A          160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE---------------VCAPGGAKYKDELIEA  223 (272)
T ss_dssp             HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH---------------HHGGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH---------------HHhcccccchHHHHHH
Confidence            888888888777433 45566666677776676   6667777765432               11111111    1256


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112          401 CNSLMNGFIQASKLENAIFLFKEMSRKG  428 (625)
Q Consensus       401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  428 (625)
                      +..+...|...|++++|...|+++.+..
T Consensus       224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          224 NEYIAYYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7778888888899999999998888764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.69  E-value=1e-12  Score=132.03  Aligned_cols=427  Identities=11%  Similarity=0.050  Sum_probs=206.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC---hhHHHHHH
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD---YMRAKEIW  193 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~  193 (625)
                      .+-+..|++.+..+ |-|...|..++..+.+.+.++.+..+|+++... .|.....|...+....+.|+   ++.+..+|
T Consensus        49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            34444555555555 567777888887777777788888888887776 45566777777777777777   78888888


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCCh--------hhHHHHHHHHHh-CCC-CC-ChhhHHHHHHHHHh---------
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRF--------DECLEMWDRMKK-NER-EK-DSFTYCSFIHGLCK---------  253 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------  253 (625)
                      ++.+.....+|++..|...+....+.++.        +...++|+.... .|. .+ +...|...+.....         
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            88776532236777777766655555543        223356665543 233 23 33456555554332         


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHhcC-------C------
Q 038112          254 AGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-------------GKIKECFELWEVMGRKG-------C------  307 (625)
Q Consensus       254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~-------~------  307 (625)
                      .++++.+..+|+.++......-..+|......-...             .+++.|...+.++....       |      
T Consensus       207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~  286 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA  286 (679)
T ss_dssp             HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred             HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence            234566777777777532111122332211111110             11222333332221100       0      


Q ss_pred             -----C--------cHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-H
Q 038112          308 -----L--------NVVSYNILIRGLLENG-------KVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAI-Q  366 (625)
Q Consensus       308 -----~--------~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~  366 (625)
                           +        ....|...+..--..+       ..+.+..+|++.+...+ .....|...+..+...|+.+.|. .
T Consensus       287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~  365 (679)
T 4e6h_A          287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITK  365 (679)
T ss_dssp             CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHH
Confidence                 0        0123333333222221       01223344555544422 24444544454444555554453 5


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC-----
Q 038112          367 ILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC---------SPT-----  432 (625)
Q Consensus       367 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~-----  432 (625)
                      ++++                  ... .++.+...|...+....+.|+++.|.++|+.+.....         .|+     
T Consensus       366 il~r------------------Ai~-~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~  426 (679)
T 4e6h_A          366 YLKL------------------GQQ-CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI  426 (679)
T ss_dssp             HHHH------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHH------------------HHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhh
Confidence            5442                  221 1223444455555555555566666666655543200         011     


Q ss_pred             -------hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHH
Q 038112          433 -------VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQS-KKIDMALKLCCQFLQKGFTPDVT  504 (625)
Q Consensus       433 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~  504 (625)
                             ...|...+....+.|..+.|..+|.++++.........|...+....+. ++.+.|.++|+..++. .+.+..
T Consensus       427 ~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~  505 (679)
T 4e6h_A          427 NQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHH
T ss_pred             hhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchH
Confidence                   1234444444445555555555555555430011122222222222222 2355555555555554 233444


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .+...+......|+.+.|..+|+++.....++  ....|...+..-...|+.+.+..+.+++.+
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~  569 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE  569 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555555555556666665555542111  234455555555555555555555555555

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.68  E-value=8e-14  Score=126.70  Aligned_cols=228  Identities=11%  Similarity=0.005  Sum_probs=155.7

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHhHHhhCCCcchh
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK----NSMPDKALDVFQRMNEIFGCEAGIL  110 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~  110 (625)
                      |.++.++..++..+...|++++|.+.|+++++.   .+...+..++.+|..    .+++++|...|++..          
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~----------   69 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC----------   69 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----------
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH----------
Confidence            566777788888888888888888888888773   356677777777777    666666666666652          


Q ss_pred             hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHh----
Q 038112          111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK----SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFK----  182 (625)
Q Consensus       111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  182 (625)
                                       +.+   +..++..+...+..    .+++++|+..|++..+.+   ++..+..+..+|..    
T Consensus        70 -----------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~  126 (273)
T 1ouv_A           70 -----------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV  126 (273)
T ss_dssp             -----------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred             -----------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence                             222   45666677777777    777777777777777764   56667777777777    


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 038112          183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCK----A  254 (625)
Q Consensus       183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  254 (625)
                      .+++++|+..|++..+.+    +...+..+...+..    .+++++|+..|++..+.+   +...+..+...|..    .
T Consensus       127 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          127 TRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred             ccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence            777777777777777653    44556666666666    677777777777766542   34556666666766    7


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 038112          255 GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR----AGKIKECFELWEVMGRKGCL  308 (625)
Q Consensus       255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~  308 (625)
                      +++++|+..|++..+.+   +...+..+..+|..    .+++++|.+.|+.....++.
T Consensus       200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence            77777777777776653   25556666666666    67777777777776665543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.68  E-value=2.4e-12  Score=129.35  Aligned_cols=445  Identities=10%  Similarity=0.016  Sum_probs=282.3

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhcCC---hHHHHHHH
Q 038112           54 VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQ---FEKAKRFL  123 (625)
Q Consensus        54 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~---~~~A~~~~  123 (625)
                      ..+-...|+..+..+| .+...|..++..+.+.+.++.++.+|+++...+|.....       -.+.++   ++.+..+|
T Consensus        48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            4445556666666653 477777777777777777777777777777766666555       233455   77777777


Q ss_pred             HHHHHCC-CCCCHhHHHHHHHHHHhcCCh--------hhHHHHHHHHHhC-CC-CCC-chhhHHHHHHHH---------h
Q 038112          124 NSLWEKG-LKPDVYSYGTVINGLVKSGDL--------LGALAVFDEMFER-GV-ETN-VVCYNILIDGFF---------K  182 (625)
Q Consensus       124 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~---------~  182 (625)
                      ++.+... .+|++..|...+....+.++.        +...++|+.+... |. .++ ...|...+....         .
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            7777653 147888898888876665554        3345778776654 55 443 356766665543         2


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038112          183 KGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAER  262 (625)
Q Consensus       183 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  262 (625)
                      .++.+.++.+|++++..+ ...-...|......-...+ ...+.+++.+.                     ..+++.|..
T Consensus       207 q~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~  263 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARS  263 (679)
T ss_dssp             HHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHH
Confidence            345778888998887532 1111223332222111111 11122222111                     112233333


Q ss_pred             HHHHHHHC--CC----C-----------c-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCcH
Q 038112          263 VYREMVES--GI----F-----------V-----D---AVTYNAMIDGFCRAG-------KIKECFELWEVMGRKGCLNV  310 (625)
Q Consensus       263 ~~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~  310 (625)
                      .+.++...  ++    +           |     +   ...|...+..-...+       ..+.+..+|+++....|...
T Consensus       264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~  343 (679)
T 4e6h_A          264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP  343 (679)
T ss_dssp             HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH
Confidence            33332110  11    0           1     0   133444443322222       13446678999988888899


Q ss_pred             HHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 038112          311 VSYNILIRGLLENGKVDEAI-SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM  389 (625)
Q Consensus       311 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~  389 (625)
                      ..|...+..+...|+.++|. .+|++..... +.+...+...+......|+++.|..+++++.......       ++.+
T Consensus       344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~-------~~~~  415 (679)
T 4e6h_A          344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD-------LAAL  415 (679)
T ss_dssp             HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH-------hhhh
Confidence            99999999999999999996 9999998763 3355566677888888999999999999655321000       0000


Q ss_pred             hhCCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-CCHHHHHHHHH
Q 038112          390 DKHGCK-----------LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKV-ERFGEAYSFVK  457 (625)
Q Consensus       390 ~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~  457 (625)
                      ... .+           ....+|...+....+.|..+.|+.+|.+..+.........|...+..-.+. ++.+.|..+|+
T Consensus       416 ~~~-~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife  494 (679)
T 4e6h_A          416 MED-DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLE  494 (679)
T ss_dssp             HHH-STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred             hhc-cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            010 11           123468888888888999999999999998761222344454444443344 45899999999


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 038112          458 EMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTP--DVTMYNILIHGLCSAGKVEDALQLYSNMKKR  532 (625)
Q Consensus       458 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  532 (625)
                      ..++. .+.+...+...+......|+.+.|..+|++.+....++  ....|...+..-...|+.+.+..+.+++.+.
T Consensus       495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99986 44466667788888888999999999999999874322  3568888888888999999999999999986

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.67  E-value=2.6e-13  Score=123.27  Aligned_cols=222  Identities=13%  Similarity=0.018  Sum_probs=106.8

Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCK----NGYLNKAIQILNEVEEGGEGRLADAAS  384 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~a~~  384 (625)
                      ++.++..+...+...|++++|+..|++..+.+   +...+..+...+..    .+++++|...+++              
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~--------------   67 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAK--------------   67 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--------------
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH--------------
Confidence            44444555555555555555555555544421   23334444444444    4444444444442              


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHH
Q 038112          385 LVNRMDKHGCKLNAYTCNSLMNGFIQ----ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCK----VERFGEAYSFV  456 (625)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~  456 (625)
                          ....+   ++..+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|+..+
T Consensus        68 ----a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  137 (273)
T 1ouv_A           68 ----ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYF  137 (273)
T ss_dssp             ----HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             ----HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence                11111   33344444444444    555555555555554432   34444445555544    55555555555


Q ss_pred             HHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 038112          457 KEMLEKGWKPDMITYSLLINGLCQ----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSN  528 (625)
Q Consensus       457 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~  528 (625)
                      ++..+.+   +...+..+...+..    .+++++|...+++..+.+   +...+..+..+|..    .+++++|...|++
T Consensus       138 ~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  211 (273)
T 1ouv_A          138 TKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK  211 (273)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred             HHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence            5555432   33344444444444    555555555555555432   33444455555555    5555555555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHH
Q 038112          529 MKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILE  566 (625)
Q Consensus       529 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  566 (625)
                      ..+.+   +...+..++.+|..    .+++++|...|+++.+
T Consensus       212 a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          212 ACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence            55532   24444555555555    5555555555555555

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=1.5e-15  Score=138.60  Aligned_cols=252  Identities=10%  Similarity=-0.057  Sum_probs=179.5

Q ss_pred             HHHHccCChhHHHHHHHhhccCCC--CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112           10 NLLKAEKNPHTALALFDSATREPG--YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      .++..+|++++|+..|+.+++...  .|.++.++..++.++...|++++|...|+.+++.++ .+..++..++.++...|
T Consensus        13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTT
T ss_pred             eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHcc
Confidence            345567899999999999887632  145678889999999999999999999999999874 47889999999999999


Q ss_pred             CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112           88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE  167 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  167 (625)
                      ++++|+..|+++....                            +.+..++..+...+...|++++|...|+++.+..  
T Consensus        92 ~~~~A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--  141 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--  141 (275)
T ss_dssp             CHHHHHHHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence            9999999998885532                            2345667777777888888888888888887763  


Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---ChhhH
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK---DSFTY  244 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~  244 (625)
                      |+..........+...|++++|...+.......  +++...+ .++..+...++.++|+..+++.....+..   +...+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  218 (275)
T 1xnf_A          142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN  218 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence            333333444445566688888888887766652  3343343 36666777777788888887776442211   14567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038112          245 CSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELW  299 (625)
Q Consensus       245 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  299 (625)
                      ..++..+...|++++|...|++++...+. +.   .....++...|++++|++.+
T Consensus       219 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          219 FYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence            77888888888888888888888876321 22   22345566777777777665

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.65  E-value=4.1e-15  Score=135.70  Aligned_cols=248  Identities=11%  Similarity=-0.034  Sum_probs=192.6

Q ss_pred             hhhcCChHHHHHHHHHHHHCCC---CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh
Q 038112          110 LCRKRQFEKAKRFLNSLWEKGL---KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY  186 (625)
Q Consensus       110 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  186 (625)
                      +...|++++|+..|++++....   +.+..++..+...+...|++++|...|+++.+..+ .+..++..++.++...|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence            4456788888888888887631   22467788899999999999999999999998843 3788899999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038112          187 MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYRE  266 (625)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  266 (625)
                      ++|...|+++.+..  +.+..++..++.++...|++++|...++++.+..  |+.......+..+...|++++|...+.+
T Consensus        94 ~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           94 DAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999998863  4567889999999999999999999999998764  3333444445555777999999999988


Q ss_pred             HHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112          267 MVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL----NVVSYNILIRGLLENGKVDEAISIWELLREKNCN  342 (625)
Q Consensus       267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  342 (625)
                      ...... ++...+ .++..+...++.++|.+.++......+.    +..++..++.++...|++++|...|+++....  
T Consensus       170 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--  245 (275)
T 1xnf_A          170 HFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--  245 (275)
T ss_dssp             HHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Confidence            877632 233333 4677788888899999999988766543    36888999999999999999999999999874  


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          343 ADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       343 ~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      |+.  +.....++...|++++|++.+
T Consensus       246 p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          246 VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            322  223345666777777776654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=147.15  Aligned_cols=273  Identities=12%  Similarity=0.053  Sum_probs=160.8

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCH----HHHHHHHHHhhCCCChhHHHHHHHHHHHhc-----CCCCHHHHH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSP----HLFHHILRRLIDPKLVVHVSRILELIEIQK-----CYCPEDVAL   77 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~   77 (625)
                      .++..+...|++++|+..|+.++...  |.++    .++..++..+...|++++|...+++++...     .+....++.
T Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   91 (406)
T 3sf4_A           14 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   91 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            45677778888888888888877765  5553    466777778888888888888888776542     111234666


Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-------
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-------  150 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------  150 (625)
                      .++..+...|++++|...++++....+.                    .  .+......++..+...+...|+       
T Consensus        92 ~la~~~~~~g~~~~A~~~~~~al~~~~~--------------------~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  149 (406)
T 3sf4_A           92 NLGNTLKVLGNFDEAIVCCQRHLDISRE--------------------L--NDKVGEARALYNLGNVYHAKGKSFGCPGP  149 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------H--TCHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------c--ccccchHHHHHHHHHHHHHcCCccccccc
Confidence            7777788888888888877776442211                    0  0001124467777777888888       


Q ss_pred             -------------hhhHHHHHHHHHhC----C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cch
Q 038112          151 -------------LLGALAVFDEMFER----G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVT  208 (625)
Q Consensus       151 -------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~  208 (625)
                                   ++.|...+++..+.    + .+....++..++.++...|++++|...+++..+.....++    ..+
T Consensus       150 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  229 (406)
T 3sf4_A          150 QDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  229 (406)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence                         77777777766543    1 1111235666677777777777777777766543111111    125


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHH
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCSFIHGLCKAGNVEGAERVYREMVESGIF-----VDAVT  278 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~  278 (625)
                      +..+...+...|++++|...+++....... .+    ..++..+...+...|++++|...+++..+....     ....+
T Consensus       230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  309 (406)
T 3sf4_A          230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA  309 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            556666666667777666666665432110 01    234555555666666666666666555432100     01334


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038112          279 YNAMIDGFCRAGKIKECFELWEVMG  303 (625)
Q Consensus       279 ~~~l~~~~~~~~~~~~a~~~~~~~~  303 (625)
                      +..+..+|...|++++|.+.+++..
T Consensus       310 ~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          310 CWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4455555555555555555555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.65  E-value=8.3e-14  Score=125.02  Aligned_cols=202  Identities=13%  Similarity=0.032  Sum_probs=165.3

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMIN  214 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  214 (625)
                      ...+..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|.+.++++.+..  +.+...+..++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence            4567778888888999999999999888774 3367788888888999999999999998888763  446677888888


Q ss_pred             HHHhcCChhhHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112          215 GLCKCGRFDECLEMWDRMKKNEREK-DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK  293 (625)
Q Consensus       215 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (625)
                      .+...|++++|.+.++++...+..| +...+..++..+...|++++|...++++.+... .+...+..++.++...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHH
Confidence            8899999999999998887622223 456677788888889999999999988887643 36778888888899999999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      +|...++.+....+.+...+..+...+...|++++|...++.+.+..
T Consensus       193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            99999999888888888888888888889999999999998888774

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=6.5e-15  Score=131.54  Aligned_cols=207  Identities=12%  Similarity=0.009  Sum_probs=140.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+...|++++|+..|+.+++..  |.++.++..++..+...|++++|.+.++.+++..+ .+..++..++.++..
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVV  103 (243)
T ss_dssp             ---------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH
Confidence            345566667777777777777777655  66777777777777777777777777777777653 366677777777777


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      .|++++|...++++.+                           .. +.+...+..+...+...|++++|...++++.+..
T Consensus       104 ~~~~~~A~~~~~~~~~---------------------------~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  155 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALR---------------------------AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN  155 (243)
T ss_dssp             TTCHHHHHHHHHHHHH---------------------------HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred             hccHHHHHHHHHHHHH---------------------------hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            7777777777766644                           22 3456677778888888888888888888888763


Q ss_pred             CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112          166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC  245 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  245 (625)
                       +.+...+..++.++...|++++|+..++.+.+..  +.+..++..++.++...|++++|...++++.+..+ .+...+.
T Consensus       156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~  231 (243)
T 2q7f_A          156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP-DHMLALH  231 (243)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc-chHHHHH
Confidence             3366778888888888888888888888887763  44566788888888888888888888888877643 2444444


Q ss_pred             HH
Q 038112          246 SF  247 (625)
Q Consensus       246 ~l  247 (625)
                      .+
T Consensus       232 ~~  233 (243)
T 2q7f_A          232 AK  233 (243)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=9.4e-14  Score=124.67  Aligned_cols=208  Identities=12%  Similarity=0.018  Sum_probs=178.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 038112          398 AYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLING  477 (625)
Q Consensus       398 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  477 (625)
                      ...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            5678888899999999999999999998764 3367788899999999999999999999998863 3467788899999


Q ss_pred             HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112          478 LCQSKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK  556 (625)
Q Consensus       478 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  556 (625)
                      +...|++++|.++++++.+.+..| +...+..++.++...|++++|..+++++.+.. +.+...+..++.++...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998832234 56788889999999999999999999999863 4568899999999999999999


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112          557 ALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWH  612 (625)
Q Consensus       557 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  612 (625)
                      |...++++++  ..| +...+..+...+...|++++|.++++++.+.  .|+...+.
T Consensus       194 A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~  246 (252)
T 2ho1_A          194 ARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred             HHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence            9999999998  455 5677888889999999999999999999874  36554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=1.2e-13  Score=121.63  Aligned_cols=204  Identities=11%  Similarity=0.012  Sum_probs=164.5

Q ss_pred             CCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHH
Q 038112          132 KPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNV  211 (625)
Q Consensus       132 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  211 (625)
                      +.+...+..+...+...|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++++.+..  +.+..++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~   81 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNN   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHH
Confidence            3456678888888889999999999999888874 3367788888888889999999999998888763  456667888


Q ss_pred             HHHHHHhc-CChhhHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 038112          212 MINGLCKC-GRFDECLEMWDRMKKNEREK-DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA  289 (625)
Q Consensus       212 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  289 (625)
                      ++..+... |++++|...++++...+..| +...+..++..+...|++++|+..++++.+..+. +...+..++.++...
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence            88888888 99999999998888722222 2566778888888899999999999888876432 577888888888889


Q ss_pred             CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          290 GKIKECFELWEVMGRKGC-LNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       290 ~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      |++++|.+.++.+....| .+...+..+...+...|+.+++..+++.+...
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            999999999988888888 78888888888888888999888888888766

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=1.7e-13  Score=120.66  Aligned_cols=213  Identities=8%  Similarity=-0.034  Sum_probs=179.1

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 038112          395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLL  474 (625)
Q Consensus       395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  474 (625)
                      +.+...+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            34667788899999999999999999999987643 357788899999999999999999999998863 4467788899


Q ss_pred             HHHHhcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 038112          475 INGLCQS-KKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTG  552 (625)
Q Consensus       475 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  552 (625)
                      +..+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  161 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG  161 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence            9999999 99999999999999832233 36788899999999999999999999999863 456889999999999999


Q ss_pred             ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038112          553 DCDKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL  614 (625)
Q Consensus       553 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  614 (625)
                      ++++|..+++++++  ..|  +...+..+...+...|+.++|..+++.+.+.  .|+......+
T Consensus       162 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~  221 (225)
T 2vq2_A          162 QLGDADYYFKKYQS--RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTV  221 (225)
T ss_dssp             CHHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            99999999999998  444  5667777778888999999999999999753  3665544433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.63  E-value=6.3e-16  Score=155.07  Aligned_cols=136  Identities=11%  Similarity=0.134  Sum_probs=102.5

Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQ---KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNT  543 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  543 (625)
                      -..||+.++.+|++.|++++|.++|.+|.+   .|..||..+||.|+.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345788888888888888888888877654   46788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHccCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112          544 LMDGLFKTGDC-DKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT  607 (625)
Q Consensus       544 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  607 (625)
                      ++.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+    +..++.++++ ..++.|+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~  265 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLP  265 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCC
Confidence            88888888774 6778888888888888888888877755443    2445555555 3344443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=1.6e-14  Score=128.87  Aligned_cols=202  Identities=11%  Similarity=0.068  Sum_probs=142.9

Q ss_pred             CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112          134 DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMI  213 (625)
Q Consensus       134 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  213 (625)
                      ....|..+...+...|++++|...|+++.+.. +.+...+..++.++...|++++|+..++++.+..  +.+...+..++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la   98 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAG   98 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHH
Confidence            44556677777778888888888888887763 3366777778888888888888888888877753  44566777788


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 038112          214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIK  293 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  293 (625)
                      ..+...|++++|.+.++++.+..+ .+...+..++..+...|++++|...++++.+... .+...+..++..+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence            888888888888888888776553 4566777788888888888888888888877643 36777788888888888888


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          294 ECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       294 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      +|.+.++.+....+.+..++..++.++...|++++|...++++.+..
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            88888888888877788888888888888888888888888888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.63  E-value=2.6e-14  Score=138.63  Aligned_cols=299  Identities=15%  Similarity=0.046  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhH
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLN----VVSYNILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTH  348 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~  348 (625)
                      .+......+...|++++|...|+.+....+.+    ..++..++..+...|++++|...++++...    +..| ....+
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            33444444445555555555555544444333    234445555555555555555555544322    1111 12344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC---------------
Q 038112          349 GVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK---------------  413 (625)
Q Consensus       349 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------  413 (625)
                      ..+...+...|++++|...+.+...           +....  ........++..+...|...|+               
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~-----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  157 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLD-----------ISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE  157 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence            5555666666666666666664322           11111  0111124467778888888898               


Q ss_pred             -----HHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHH
Q 038112          414 -----LENAIFLFKEMSRK----GCSP-TVVSYNTLINGLCKVERFGEAYSFVKEMLEKGW-KPD----MITYSLLINGL  478 (625)
Q Consensus       414 -----~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~  478 (625)
                           +++|...+++....    +..+ ...++..+...+...|++++|...+++..+... .++    ..++..+...+
T Consensus       158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  237 (406)
T 3sf4_A          158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY  237 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence                 99999998886542    1111 234677888889999999999999998875310 111    23678888899


Q ss_pred             hccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHH
Q 038112          479 CQSKKIDMALKLCCQFLQK----GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLVTYNTLMDGL  548 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~  548 (625)
                      ...|++++|...+++..+.    +..+ ...++..++.+|...|++++|...++++.+.    +..+ ...++..++.+|
T Consensus       238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  317 (406)
T 3sf4_A          238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY  317 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            9999999999999988753    1111 1557788899999999999999999988763    1111 156788899999


Q ss_pred             HccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCh
Q 038112          549 FKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRM  589 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~  589 (625)
                      ...|++++|...++++++.    +..+ ...++..+...+...|+.
T Consensus       318 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          318 TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            9999999999999998872    2122 235667777788777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=4.4e-14  Score=137.21  Aligned_cols=274  Identities=15%  Similarity=0.069  Sum_probs=153.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038112          279 YNAMIDGFCRAGKIKECFELWEVMGRKGCLNV----VSYNILIRGLLENGKVDEAISIWELLREK----NC-NADSTTHG  349 (625)
Q Consensus       279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  349 (625)
                      +..+...+...|++++|+..|+.+....+.+.    .++..+..++...|++++|...+++....    +. ......+.
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            34455556666666666666666666555443    35566666666666666666666655442    00 11223344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC-KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG  428 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  428 (625)
                      .+...+...|++++|...+++...              .....+. +....                             
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~--------------~~~~~~~~~~~~~-----------------------------  167 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLT--------------LARQLGDRLSEGR-----------------------------  167 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHHTCHHHHHH-----------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--------------HHHHhhchHHHHH-----------------------------
Confidence            445555555555555555553221              1111111 11122                             


Q ss_pred             CCCChhhHHHHHHHHhccCC-----------------HHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHhccCCHHH
Q 038112          429 CSPTVVSYNTLINGLCKVER-----------------FGEAYSFVKEMLEK----GWK-PDMITYSLLINGLCQSKKIDM  486 (625)
Q Consensus       429 ~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~  486 (625)
                            ++..+...+...|+                 +++|+..+++..+.    +.. .....+..+...+...|++++
T Consensus       168 ------~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  241 (411)
T 4a1s_A          168 ------ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQA  241 (411)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ------HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHH
Confidence                  33444444444444                 55555555444321    001 112355566666777777777


Q ss_pred             HHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHHccCChhH
Q 038112          487 ALKLCCQFLQKGF-TPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRN--CV---PNLVTYNTLMDGLFKTGDCDK  556 (625)
Q Consensus       487 A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~  556 (625)
                      |...+++..+... .++    ...+..++.+|...|++++|...++++....  ..   ....++..++.++...|++++
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (411)
T 4a1s_A          242 AIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT  321 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            7777766654210 001    2366677777888888888888887776531  00   114567778888888888888


Q ss_pred             HHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          557 ALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       557 A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      |..+++++++.    +..+ ...++..+..+|.+.|++++|.+++++.++
T Consensus       322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            88888887762    1011 124667777788888888888888888765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.62  E-value=7.8e-15  Score=142.55  Aligned_cols=270  Identities=13%  Similarity=-0.010  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHccCCchHHHHHHHHhHHhh------CCCc
Q 038112           38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE----DVALSVIQAYGKNSMPDKALDVFQRMNEIF------GCEA  107 (625)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~  107 (625)
                      ...+..++..+...|++++|...|+++++..+. +.    .++..++.++...|++++|...|+++....      +...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            444455555555666666666666666655432 22    345555556666666666666665554421      1111


Q ss_pred             ch-------hhhcCChHHHHHHHHHHHHC----C-CCCCHhHHHHHHHHHHhcCC-----------------hhhHHHHH
Q 038112          108 GI-------LCRKRQFEKAKRFLNSLWEK----G-LKPDVYSYGTVINGLVKSGD-----------------LLGALAVF  158 (625)
Q Consensus       108 ~~-------~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  158 (625)
                      .+       +...|++++|...|++++..    + .+....++..+...+...|+                 ++.|+..+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            11       45556666666666655432    1 11234567777788888888                 77777776


Q ss_pred             HHHHhCC-----CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112          159 DEMFERG-----VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK  233 (625)
Q Consensus       159 ~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  233 (625)
                      ++..+..     .+....++..++.++...|++++|+..+++..+..  +....                          
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~--------------------------  258 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGD--------------------------  258 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTC--------------------------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCC--------------------------
Confidence            6654321     01112345555555666666666666655554321  00000                          


Q ss_pred             hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112          234 KNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF-----VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL  308 (625)
Q Consensus       234 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  308 (625)
                         ......++..+...+...|++++|...+++.+.....     ....++..+..++...|++++|.+.+++.....+.
T Consensus       259 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          259 ---RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             ---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence               0000113444444555555555555555444432100     01344555566666666666666666655433211


Q ss_pred             ------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          309 ------NVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       309 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                            ...++..+..++...|++++|...+++....
T Consensus       336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                  3446667777777777777777777777665

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.61  E-value=1.2e-13  Score=127.65  Aligned_cols=219  Identities=11%  Similarity=0.035  Sum_probs=156.5

Q ss_pred             hHHHHHHHhhccCCCCCCCHHHHHHHHHHhh-------CCCCh-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112           19 HTALALFDSATREPGYAHSPHLFHHILRRLI-------DPKLV-------VHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      ++|+..|+.++...  |.++.+|..++..+.       +.|++       ++|..+|+++++.-.|.+..++..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            78999999999887  999999999998876       35886       899999999999423557889999999999


Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVY-SYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      +.|++++|+.+|+++.+..|.                            +.. +|..++..+.+.|++++|..+|+++++
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~----------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  162 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDI----------------------------DPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSS----------------------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHHHhcccc----------------------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999999999888553322                            222 566677777777777777777777776


Q ss_pred             CCCCCCchhhHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--
Q 038112          164 RGVETNVVCYNILIDGFF-KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE-REK--  239 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--  239 (625)
                      ..+ .+...|...+.... ..|++++|+.+|+...+.  .+.+...|..++..+.+.|++++|..+|++..... .+|  
T Consensus       163 ~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~  239 (308)
T 2ond_A          163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             cCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence            532 23444443333322 257777777777777665  24455667777777777777777777777777642 222  


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      ....|..++......|+.+.|..+++++.+.
T Consensus       240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          240 SGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456666777777777777777777777665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=152.90  Aligned_cols=136  Identities=9%  Similarity=0.060  Sum_probs=114.3

Q ss_pred             ChhhHHHHHHHHhccCCHHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038112          432 TVVSYNTLINGLCKVERFGEAYSFVKEMLE---KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNI  508 (625)
Q Consensus       432 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  508 (625)
                      -..+|+++|.+|++.|+.++|..+|..|.+   .|+.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345899999999999999999999988764   47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112          509 LIHGLCSAGKV-EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD  572 (625)
Q Consensus       509 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  572 (625)
                      ++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+    +..++..+++ ..++.|+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~  265 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLP  265 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCC
Confidence            99999999974 7889999999999999999999988765543    3444444444 2345543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.61  E-value=7e-14  Score=131.72  Aligned_cols=203  Identities=15%  Similarity=0.039  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHhccCC--------------------HHHHHH
Q 038112          400 TCNSLMNGFIQASKLENAIFLFKEMSRKGC-SPT----VVSYNTLINGLCKVER--------------------FGEAYS  454 (625)
Q Consensus       400 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~  454 (625)
                      ++..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            344444445555555555555554433110 011    1244455555555555                    666666


Q ss_pred             HHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCCHHHHHH
Q 038112          455 FVKEMLEK----GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQK----GF-TPDVTMYNILIHGLCSAGKVEDALQ  524 (625)
Q Consensus       455 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~  524 (625)
                      .+++....    +..+ ....+..+...+...|++++|...+++..+.    +. .....++..++.++...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            66554431    1111 1235666777778888888888888877652    10 1113367788888899999999999


Q ss_pred             HHHHHHhC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHH
Q 038112          525 LYSNMKKR----NCVP-NLVTYNTLMDGLFKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFE  594 (625)
Q Consensus       525 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~  594 (625)
                      ++++....    +.++ ...++..++.++...|++++|...++++++.    +-.+ ...++..+...|.+.|++++|.+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99887753    1111 1567788899999999999999999998772    1111 13467788889999999999999


Q ss_pred             HHHHHHHC
Q 038112          595 FLNDALCR  602 (625)
Q Consensus       595 ~~~~~~~~  602 (625)
                      +++++.+.
T Consensus       325 ~~~~a~~~  332 (338)
T 3ro2_A          325 FAEKHLEI  332 (338)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99999863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=1.3e-14  Score=136.88  Aligned_cols=276  Identities=11%  Similarity=0.052  Sum_probs=193.7

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCC----HHHHHHHHHHhhCCCChhHHHHHHHHHHHhc-----CCCCHHHHH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHS----PHLFHHILRRLIDPKLVVHVSRILELIEIQK-----CYCPEDVAL   77 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~   77 (625)
                      ..+..+...|++++|+..|+.+++..  |.+    ..++..++..+...|++++|.+.+++++...     .+....++.
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            45678889999999999999988875  556    3667788888999999999999998887642     112245677


Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-------
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-------  150 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------  150 (625)
                      .++..+...|++++|...+++..+..+....                      ......++..+...+...|+       
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------------KVGEARALYNLGNVYHAKGKSFGCPGP  145 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------------chHHHHHHHHHHHHHHHcCcccccchh
Confidence            7888888899999999888887542221100                      00113356666777777777       


Q ss_pred             -------------hhhHHHHHHHHHhC----C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC----cch
Q 038112          151 -------------LLGALAVFDEMFER----G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN----VVT  208 (625)
Q Consensus       151 -------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~  208 (625)
                                   ++.|...+++..+.    + .+....++..++.++...|++++|...+++..+.....++    ..+
T Consensus       146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  225 (338)
T 3ro2_A          146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  225 (338)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                         78888777776542    1 1112346777888888888888888888877653211111    236


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHH
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCSFIHGLCKAGNVEGAERVYREMVESGI-----FVDAVT  278 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~  278 (625)
                      +..++..+...|++++|...+++....... .+    ..++..+...+...|++++|...+++..+...     .....+
T Consensus       226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  305 (338)
T 3ro2_A          226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA  305 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            777888888889999988888877643211 11    44677788888899999999998888765311     112446


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038112          279 YNAMIDGFCRAGKIKECFELWEVMGRKG  306 (625)
Q Consensus       279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  306 (625)
                      +..+..+|...|++++|...+++.....
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            7788889999999999999998887653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.58  E-value=1.1e-13  Score=135.82  Aligned_cols=215  Identities=10%  Similarity=-0.022  Sum_probs=163.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh-hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDL-LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      .+++++..++...... +.+...+..+...+...|++ ++|+..|+++.+..+ .+...|..++.+|...|++++|++.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566777777666544 45777788888888888888 888888888887743 35778888888888888888888888


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhc---------CChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKC---------GRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKA--------GN  256 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~  256 (625)
                      +++.+..   |+...+..+..++...         |++++|+..|++..+..+ .+...|..+..+|...        |+
T Consensus       161 ~~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          161 SGALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence            8888753   5567777888888888         888888888888777653 3567777788888777        77


Q ss_pred             HHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112          257 VEGAERVYREMVESGIF--VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWE  334 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  334 (625)
                      +++|+..|++.++..+.  .+...+..+..+|...|++++|.+.|++.....|.+..++..+..++...|++++|+..+.
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888888775331  3677778888888888888888888888888777777888888888888777777776554


Q ss_pred             H
Q 038112          335 L  335 (625)
Q Consensus       335 ~  335 (625)
                      +
T Consensus       317 ~  317 (474)
T 4abn_A          317 K  317 (474)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.57  E-value=8.4e-13  Score=126.56  Aligned_cols=236  Identities=10%  Similarity=0.006  Sum_probs=123.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 038112          315 ILIRGLLENGKVDEAISIWELLREK----NCNA-DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRM  389 (625)
Q Consensus       315 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~  389 (625)
                      ..+..+...|++++|+..+++....    +..+ ...++..+...+...|+++.|...+.+...           ++   
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----------~~---  173 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----------IY---  173 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HH---
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HH---
Confidence            3666777788888888888887664    1111 234567777888888888888888875432           11   


Q ss_pred             hhCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 038112          390 DKHG--CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS-PT----VVSYNTLINGLCKVERFGEAYSFVKEMLEK  462 (625)
Q Consensus       390 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  462 (625)
                      ...+  .+....++..+...|...|++++|...|++..+.... ++    ..++..+..+|...|++++|...+++..+.
T Consensus       174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            1111  1113446677777888888888888888776643110 11    124555556666666666666666655541


Q ss_pred             ----CC-CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHH
Q 038112          463 ----GW-KPDMITYSLLINGLCQSKKIDMALKLCCQFLQK----GFTPDVTMYNILIHGLCSAGK---VEDALQLYSNMK  530 (625)
Q Consensus       463 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~  530 (625)
                          +. +....++..+...+...|++++|...+++..+.    +-+.....+..+...+...|+   +++|+.++++..
T Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~  333 (383)
T 3ulq_A          254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM  333 (383)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT
T ss_pred             HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc
Confidence                11 112334455555555555555555555554431    001111123334444444444   344444443331


Q ss_pred             hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .  .+.....+..++..|...|++++|...++++++
T Consensus       334 ~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          334 L--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             C--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            0  011123344444555555555555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=5.3e-13  Score=113.03  Aligned_cols=166  Identities=14%  Similarity=0.093  Sum_probs=83.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 038112          397 NAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLIN  476 (625)
Q Consensus       397 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  476 (625)
                      ++.+|..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3445555555555555555555555555544322 34455555555555555555555555554431 223344444444


Q ss_pred             HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhH
Q 038112          477 GLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDK  556 (625)
Q Consensus       477 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  556 (625)
                      .+...++++.|...+.+..+.. +.+...+..++.+|...|++++|+..|+++.+.+ +.+..++..++.+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            4555555555555555554432 2234445555555555555555555555555431 2334455555555555555555


Q ss_pred             HHHHHHHHHH
Q 038112          557 ALEIWNHILE  566 (625)
Q Consensus       557 A~~~~~~~~~  566 (625)
                      |+..|+++++
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=5.8e-13  Score=112.81  Aligned_cols=167  Identities=15%  Similarity=0.094  Sum_probs=120.9

Q ss_pred             CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHH
Q 038112          169 NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFI  248 (625)
Q Consensus       169 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  248 (625)
                      ++.+|..++.++...|++++|++.|++..+..  |.+..++..++.++.+.|++++|+..++......+ .+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence            45566777777777777777777777776653  44556677777777777777777777777665543 3555666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDE  328 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (625)
                      ..+...++++.+...+.+.....+. +...+..+..++.+.|++++|++.|++..+..|.+..+|..++.++...|++++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            7777777777777777777765432 567777777778888888888888888877777778888888888888888888


Q ss_pred             HHHHHHHHHHc
Q 038112          329 AISIWELLREK  339 (625)
Q Consensus       329 a~~~~~~~~~~  339 (625)
                      |+..|++.++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888877765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=1.1e-12  Score=125.67  Aligned_cols=234  Identities=7%  Similarity=-0.053  Sum_probs=153.2

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CcCHHHHH
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNER-EK----DSFTYCSFIHGLCKAGNVEGAERVYREMVESG--I----FVDAVTYN  280 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~  280 (625)
                      .+..+...|++++|+..+++...... .+    ...++..+...|...|++++|+..+.+.++..  .    .....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            55667777888888888877764310 01    23457777778888888888888887776531  1    11235677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChhhHH
Q 038112          281 AMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYNILIRGLLENGKVDEAISIWELLREK----NC-NADSTTHG  349 (625)
Q Consensus       281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  349 (625)
                      .+..+|...|++++|++.+++.....+.      ...++..++.++...|++++|+..+++....    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7788888888888888888877644221      3357888888889999999999888888762    22 22455677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASK---LENAIFLFKEMSR  426 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~  426 (625)
                      .+...+...|++++|...+++...           +   ....+.+.....+..+...+...|+   +++|..++++...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~-----------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~  334 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMA-----------Y---SQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML  334 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-----------H---HHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH-----------H---HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC
Confidence            788888999999999988885432           1   1111222222335566677777777   6666666655421


Q ss_pred             CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112          427 KGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLE  461 (625)
Q Consensus       427 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (625)
                        .+.....+..+...|...|++++|...+++..+
T Consensus       335 --~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          335 --YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              111223555667777777777777777776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.54  E-value=3.3e-12  Score=118.00  Aligned_cols=219  Identities=10%  Similarity=-0.002  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-------hcCCh-------hhHHHHHHHHHhCCCCCCchhhHHHHHHHHh
Q 038112          117 EKAKRFLNSLWEKGLKPDVYSYGTVINGLV-------KSGDL-------LGALAVFDEMFERGVETNVVCYNILIDGFFK  182 (625)
Q Consensus       117 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  182 (625)
                      ++|...|++++... |.++..|..++..+.       +.|++       ++|..+|++.++.-.+.+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45556666666543 456667777776665       34775       7888888888873123355678888888888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHH
Q 038112          183 KGDYMRAKEIWERLVMETSVYPNVV-TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC-KAGNVEGA  260 (625)
Q Consensus       183 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a  260 (625)
                      .|++++|.++|+++.+..  +.+.. +|..++..+.+.|++++|..+|++..+..+ .+...|...+.... ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888742  22333 688888888888888888888888876543 34444443333322 26888888


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112          261 ERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRK---GCL-NVVSYNILIRGLLENGKVDEAISIWELL  336 (625)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  336 (625)
                      ..+|+..++..+. +...+..++..+.+.|++++|..+|+.....   .|. ....|..++......|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888887765332 5677777777788888888888888888775   222 5667777777777788888888888877


Q ss_pred             HHcC
Q 038112          337 REKN  340 (625)
Q Consensus       337 ~~~~  340 (625)
                      .+..
T Consensus       268 ~~~~  271 (308)
T 2ond_A          268 FTAF  271 (308)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            7764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.52  E-value=6.5e-13  Score=130.35  Aligned_cols=213  Identities=10%  Similarity=0.005  Sum_probs=186.2

Q ss_pred             ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112          150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY-MRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      .++.++..++..... .+.+...+..++.++...|++ ++|++.|++..+..  +.+..+|..+..+|...|++++|+..
T Consensus        83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            356677777776655 344778899999999999999 99999999998874  45678899999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------CC
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKA---------GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA--------GK  291 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~  291 (625)
                      |++..+..  |+...+..+...+...         |++++|+..|++.++..+. +...+..+..+|...        |+
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence            99999875  5578899999999999         9999999999999987543 788999999999998        99


Q ss_pred             HHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          292 IKECFELWEVMGRKGC---LNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       292 ~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      +++|++.|+.+....|   .+..+|..+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988   89999999999999999999999999999988544 5667888888888889888888765


Q ss_pred             H
Q 038112          369 N  369 (625)
Q Consensus       369 ~  369 (625)
                      .
T Consensus       316 ~  316 (474)
T 4abn_A          316 G  316 (474)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=4.5e-14  Score=131.34  Aligned_cols=257  Identities=10%  Similarity=-0.008  Sum_probs=160.9

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCc
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQ-------KCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA  107 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  107 (625)
                      |....++..++..+...|++++|...++++++.       ..+....++..++.++...|++++|...++++..      
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------   97 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA------   97 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence            666788899999999999999999999999984       3344556788899999999999999999987743      


Q ss_pred             chhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC------C-CCCchhhHHHHHHH
Q 038112          108 GILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG------V-ETNVVCYNILIDGF  180 (625)
Q Consensus       108 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~  180 (625)
                                    +++.....+.+....++..+...+...|++++|...++++.+..      . +.....+..++.++
T Consensus        98 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  163 (311)
T 3nf1_A           98 --------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC  163 (311)
T ss_dssp             --------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence                          22333222223345678888888899999999999998887641      1 22345677778888


Q ss_pred             HhcCChhHHHHHHHHHHhC------CCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC-------CCCChhhHHHH
Q 038112          181 FKKGDYMRAKEIWERLVME------TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE-------REKDSFTYCSF  247 (625)
Q Consensus       181 ~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~l  247 (625)
                      ...|++++|++.++++.+.      +..+....++..+..++...|++++|...++++....       ..+....... 
T Consensus       164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-  242 (311)
T 3nf1_A          164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-  242 (311)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-
Confidence            8888888888888877654      1112223456667777777777777777777766421       0011110000 


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                                                 ....+..+...+...+.+.++...+.......+....++..++.++...|+++
T Consensus       243 ---------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  295 (311)
T 3nf1_A          243 ---------------------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFE  295 (311)
T ss_dssp             ---------------------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ---------------------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHH
Confidence                                       11112222333344455555555666655555556666666777777777777


Q ss_pred             HHHHHHHHHHHc
Q 038112          328 EAISIWELLREK  339 (625)
Q Consensus       328 ~a~~~~~~~~~~  339 (625)
                      +|...+++..+.
T Consensus       296 ~A~~~~~~al~l  307 (311)
T 3nf1_A          296 AAETLEEAAMRS  307 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777666543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.50  E-value=1.2e-11  Score=118.03  Aligned_cols=62  Identities=21%  Similarity=0.090  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC----CchhhHHHHHHHHhcCChhHHHHHHHHHHh
Q 038112          137 SYGTVINGLVKSGDLLGALAVFDEMFERGVET----NVVCYNILIDGFFKKGDYMRAKEIWERLVM  198 (625)
Q Consensus       137 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  198 (625)
                      .+..+...+...|++++|...+++..+.....    ...++..+...+...|++++|...+++...
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~  202 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN  202 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555666666666665555432111    112344455555555566555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.49  E-value=4.1e-13  Score=124.84  Aligned_cols=178  Identities=16%  Similarity=0.084  Sum_probs=114.7

Q ss_pred             CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 038112          308 LNVVSYNILIRGLLENGKVDEAISIWELLREK-------NCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLA  380 (625)
Q Consensus       308 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  380 (625)
                      ....++..++..+...|++++|..+++++.+.       ........+..+...+...|++++|...++++.        
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------   96 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--------   96 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------
Confidence            35667777777788888888888887777663       222245566778888888999999998888533        


Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHhccCCHHHHH
Q 038112          381 DAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK------GC-SPTVVSYNTLINGLCKVERFGEAY  453 (625)
Q Consensus       381 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~  453 (625)
                         .+.........+....++..+...|...|++++|...|+++.+.      +. +.....+..+...+...|++++|.
T Consensus        97 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A           97 ---AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             ---HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             ---HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence               22222222223445667788888888899999999888887653      11 112335666666777777777777


Q ss_pred             HHHHHHHHC------CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038112          454 SFVKEMLEK------GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQ  496 (625)
Q Consensus       454 ~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  496 (625)
                      .+++++.+.      +..| ...++..+...+...|++++|...++++.+
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777766653      1112 123455556666666666666666666554

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.47  E-value=2.3e-11  Score=116.16  Aligned_cols=238  Identities=8%  Similarity=-0.005  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 038112          312 SYNILIRGLLENGKVDEAISIWELLREKNCN-A----DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLV  386 (625)
Q Consensus       312 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~  386 (625)
                      .+...+..+...|++++|+..+++....... +    ....+..+...+...|+++.|...+.+...           + 
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~-----------~-  170 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD-----------I-  170 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------H-
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----------H-
Confidence            3445566677888888888888887754211 1    234566777888889999999888885432           1 


Q ss_pred             HHHhhCCC-C-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038112          387 NRMDKHGC-K-LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG----CS-PTVVSYNTLINGLCKVERFGEAYSFVKEM  459 (625)
Q Consensus       387 ~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  459 (625)
                        ....+. . ....+++.+...|...|++++|...|++..+..    .. ....++..+..+|...|++++|...+++.
T Consensus       171 --~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          171 --YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             --HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             --HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              111111 1 134567778888888888888888888776521    01 01224555666666677777777776666


Q ss_pred             HH-----CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---HHHHHHHHH
Q 038112          460 LE-----KGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQK----GFTPDVTMYNILIHGLCSAGK---VEDALQLYS  527 (625)
Q Consensus       460 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~  527 (625)
                      .+     .. +....++..+...+.+.|++++|...+++..+.    +.+.....+..+...+...++   +.+|+.+++
T Consensus       249 l~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~  327 (378)
T 3q15_A          249 AKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE  327 (378)
T ss_dssp             HHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            55     21 112444555555666666666666666655542    111112233444444545555   444444444


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          528 NMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       528 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +...  .+.....+..++..|...|++++|...|+++++
T Consensus       328 ~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          328 KKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3110  111133444555555555555555555555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=6.6e-12  Score=119.94  Aligned_cols=234  Identities=14%  Similarity=0.015  Sum_probs=176.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHG-CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKG  428 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  428 (625)
                      .....+...|++++|...+++.....              ...+ .+....++..+...|...|+++.|...+++..+..
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~  171 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKEL--------------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY  171 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTG--------------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHH--------------hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            34556788999999999999654321              1111 11235577889999999999999999999887531


Q ss_pred             C-CC-----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHh-
Q 038112          429 C-SP-----TVVSYNTLINGLCKVERFGEAYSFVKEMLEK----GWKP-DMITYSLLINGLCQSKKIDMALKLCCQFLQ-  496 (625)
Q Consensus       429 ~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-  496 (625)
                      . .+     ...+++.+..+|...|++++|...+++..+.    +..+ ...++..+...|...|++++|...+++.++ 
T Consensus       172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~  251 (378)
T 3q15_A          172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV  251 (378)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            1 11     2346788899999999999999999988763    1111 134678889999999999999999999887 


Q ss_pred             ----CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHH
Q 038112          497 ----KGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRN----CVPNLVTYNTLMDGLFKTGD---CDKALEIWNHIL  565 (625)
Q Consensus       497 ----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~  565 (625)
                          .. +....++..++.++...|++++|..++++..+..    .+.....+..+...+...|+   +.+|+.++++. 
T Consensus       252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-  329 (378)
T 3q15_A          252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-  329 (378)
T ss_dssp             HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-
T ss_pred             HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-
Confidence                43 3347788899999999999999999999998741    12224456777788888888   77777777762 


Q ss_pred             HcCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          566 EERLRPD-IISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       566 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                        +..|+ ...+..++..|...|++++|.+.++++.+
T Consensus       330 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          330 --NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              23333 35677888999999999999999999874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.45  E-value=2.2e-12  Score=131.38  Aligned_cols=153  Identities=11%  Similarity=-0.023  Sum_probs=110.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..|+.++..+|++++|+..|+++++.+  |.++.++..++.++.+.|++++|++.|+++++.++ .+...+..++.+|..
T Consensus        13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           13 NNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            568888999999999999999998887  88899999999999999999999999999998874 478888899999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHH
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVF  158 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  158 (625)
                      .|++++|++.|+++.+..|..+.+       +...|++++|+..|+++++.+ +.+...+..+..++...|++++|.+.+
T Consensus        90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~  168 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERM  168 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHH
Confidence            999999988888887655544433       344455555555555544443 333444444555555555555554444


Q ss_pred             HHHH
Q 038112          159 DEMF  162 (625)
Q Consensus       159 ~~~~  162 (625)
                      +++.
T Consensus       169 ~kal  172 (723)
T 4gyw_A          169 KKLV  172 (723)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=1.7e-11  Score=107.75  Aligned_cols=208  Identities=11%  Similarity=0.057  Sum_probs=155.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 038112          396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLI  475 (625)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  475 (625)
                      .++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++.++.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            45678888899999999999999999999887654677777778889999999999999999999852 33456788889


Q ss_pred             HHHhccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 038112          476 NGLCQSKKIDMALKLCCQFLQKGFTPDV-------TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP--NLVTYNTLMD  546 (625)
Q Consensus       476 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~  546 (625)
                      ..+...|++++|...+++.++.. +.+.       ..|..++.++...|++++|+..|+++.+.+ +.  +...+..++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999998853 3344       557888888999999999999999999852 33  4677888888


Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038112          547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVR  616 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  616 (625)
                      ++...|     ..+++++...+ ..+...+....  ....+.+++|+..+++.++.  .|+......++.
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~  221 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence            886544     34455655532 22334443332  33456689999999999873  466554444433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.43  E-value=2e-10  Score=109.55  Aligned_cols=234  Identities=12%  Similarity=-0.007  Sum_probs=129.4

Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHH
Q 038112          214 NGLCKCGRFDECLEMWDRMKKNEREKDSF----TYCSFIHGLCKAGNVEGAERVYREMVESGIF-VD----AVTYNAMID  284 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~  284 (625)
                      ..+...|++++|...+++.....+..+..    ++..+...+...|++++|...+++....... .+    ..++..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34445555666665555554433222211    2344455555666666666666665442100 01    123455666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----ChhhHHHHH
Q 038112          285 GFCRAGKIKECFELWEVMGRKG--------CLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNA----DSTTHGVLI  352 (625)
Q Consensus       285 ~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~  352 (625)
                      .+...|++++|.+.++......        +....++..+...+...|++++|...+++........    ....+..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            6677777777777776655432        1134456667777788888888888887776653221    123456677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038112          353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTC--NSLMNGFIQASKLENAIFLFKEMSRKGCS  430 (625)
Q Consensus       353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  430 (625)
                      ..+...|++++|...+++....              ....+.++.....  ...+..+...|++++|...+++.......
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  247 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENL--------------LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA  247 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--------------HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--------------HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCC
Confidence            7788889999888888854321              1111111111111  12334467888888888888877654321


Q ss_pred             CC---hhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038112          431 PT---VVSYNTLINGLCKVERFGEAYSFVKEMLE  461 (625)
Q Consensus       431 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  461 (625)
                      +.   ...+..+...+...|++++|...+++...
T Consensus       248 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          248 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            11   11234455556666666666666665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.40  E-value=1.7e-11  Score=103.91  Aligned_cols=162  Identities=12%  Similarity=-0.024  Sum_probs=135.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++.++...|++++|+..|+.++...  |.++.++..++..+...|++++|...++.+++.. |.+..++..++..+..
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            456788889999999999999988876  8889999999999999999999999999999986 4578888889999998


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      .|++++|...++++....                            +.+...+..+...+...|++++|...++++.+..
T Consensus        89 ~~~~~~A~~~~~~~~~~~----------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEAN----------------------------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHhcC----------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence            999999888888875432                            3456677778888888889999998888888774


Q ss_pred             CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112          166 VETNVVCYNILIDGFFKKGDYMRAKEIWERLVME  199 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  199 (625)
                       +.+...+..++.++...|++++|...++.+.+.
T Consensus       141 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          141 -PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence             336678888888888889999999888887764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=3.4e-11  Score=105.88  Aligned_cols=197  Identities=12%  Similarity=0.039  Sum_probs=143.4

Q ss_pred             CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112          133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM  212 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  212 (625)
                      .|+..+......+...|++++|+..|+++++...+++...+..++.++...|++++|+..+++..+..  +.+..++..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            45677788888888888888888888888887654677777778888888888988888888888763  4456678888


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHH
Q 038112          213 INGLCKCGRFDECLEMWDRMKKNEREKDS-------FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD---AVTYNAM  282 (625)
Q Consensus       213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l  282 (625)
                      ..++...|++++|+..+++..+..+ .+.       ..|..+...+...|++++|+..|+++++.  .|+   ...+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            8888888888888888888877643 244       45777778888888888998888888875  333   4666777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112          283 IDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC  341 (625)
Q Consensus       283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  341 (625)
                      ..+|...|     ...++.+....+.+...+....  ....+.+++|+..+++..+..+
T Consensus       160 ~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          160 GVLFYNNG-----ADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHH-----HHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence            77775544     3445555555444444443333  2334567888888888888743

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.39  E-value=8.9e-12  Score=126.99  Aligned_cols=165  Identities=13%  Similarity=0.041  Sum_probs=98.3

Q ss_pred             chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHH
Q 038112          170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH  249 (625)
Q Consensus       170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  249 (625)
                      ..+++.++.++.+.|++++|++.|++.++..  +.+..++..+..++.+.|++++|+..|++..+..+ .+...|..+..
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~   85 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            3455555555555566666665555555542  33344555555666666666666666665555432 24555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHH
Q 038112          250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEA  329 (625)
Q Consensus       250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  329 (625)
                      ++...|++++|++.|++.++..+. +...+..+..+|...|++++|++.|++..+..|.+..++..++.++...|++++|
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            666666666666666666654322 4556666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHH
Q 038112          330 ISIWELLRE  338 (625)
Q Consensus       330 ~~~~~~~~~  338 (625)
                      .+.++++.+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=2.7e-11  Score=102.65  Aligned_cols=164  Identities=12%  Similarity=0.038  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038112          172 CYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGL  251 (625)
Q Consensus       172 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  251 (625)
                      .+..++..+...|++++|...++.+.+..  +.+...+..++..+...|++++|...++++.+..+ .+...+..++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            34455555666666666666666655432  33445556666666666666666666666655432 3455566666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 038112          252 CKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAIS  331 (625)
Q Consensus       252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  331 (625)
                      ...|++++|...++++.+..+ .+...+..++.++...|++++|.+.++.+....+.+..++..++.++...|++++|..
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            666777777777766665532 2556666677777777777777777777776666677777777777777777777777


Q ss_pred             HHHHHHHc
Q 038112          332 IWELLREK  339 (625)
Q Consensus       332 ~~~~~~~~  339 (625)
                      .++.+.+.
T Consensus       166 ~~~~~~~~  173 (186)
T 3as5_A          166 HFKKANEL  173 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            77776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.38  E-value=2.4e-09  Score=104.71  Aligned_cols=222  Identities=9%  Similarity=-0.032  Sum_probs=136.2

Q ss_pred             ccC-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhhHHHHHHHHH
Q 038112           85 KNS-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-LLGALAVFDEMF  162 (625)
Q Consensus        85 ~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~  162 (625)
                      +.| +.+.|+.+|+.+...+|.        |+++.+..+|++.+..-  |++..|...+....+.++ .+....+|+.+.
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~--------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al   75 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMS--------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL   75 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            456 488899999998887775        78999999999999853  799999999988877763 456788888887


Q ss_pred             hC-CCC-CCchhhHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112          163 ER-GVE-TNVVCYNILIDGFF----KKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE  236 (625)
Q Consensus       163 ~~-~~~-~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  236 (625)
                      .. |.. .+...|...+..+.    ..|+.+.+..+|++++..+ ...-...|......- ...+...+..++.+..   
T Consensus        76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~---  150 (493)
T 2uy1_A           76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP-MGSLSELWKDFENFE-LELNKITGKKIVGDTL---  150 (493)
T ss_dssp             HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC-CTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---
T ss_pred             HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---
Confidence            65 432 35567777766544    3467888999999998742 111111222222211 1111222222222211   


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHhcCCCc
Q 038112          237 REKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG--K-----IKECFELWEVMGRKGCLN  309 (625)
Q Consensus       237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~  309 (625)
                                        +.+..|..+++.+...-...+...|...+..-...+  -     .+.+..+|+++....|.+
T Consensus       151 ------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~  212 (493)
T 2uy1_A          151 ------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA  212 (493)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC
Confidence                              123334444444332100013345555444432211  1     345677888888887788


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          310 VVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       310 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      +..|...+..+...|+.+.|..++++....
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            999999999999999999999999999988

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.37  E-value=1.9e-11  Score=111.71  Aligned_cols=167  Identities=12%  Similarity=0.074  Sum_probs=126.4

Q ss_pred             HccCChhHHHHHHHhhccC------CCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc-------CCCCHHHHHHH
Q 038112           13 KAEKNPHTALALFDSATRE------PGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK-------CYCPEDVALSV   79 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l   79 (625)
                      ...|+++.|+..|+.+++.      ...|....++..++..+...|++++|...++++++..       .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4678888999988888762      1235667888999999999999999999999998762       22345678889


Q ss_pred             HHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           80 IQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        80 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      +.++...|++++|...|+++..                    ++++....+.+....++..+...+...|++++|...++
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~--------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  151 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALE--------------------IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYR  151 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHH--------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHH--------------------HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999988743                    22232222222345678888888999999999999999


Q ss_pred             HHHhC------C-CCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112          160 EMFER------G-VETNVVCYNILIDGFFKKGDYMRAKEIWERLVME  199 (625)
Q Consensus       160 ~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  199 (625)
                      ++.+.      + .+....++..++.++...|++++|...++++.+.
T Consensus       152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88765      1 1223456778888888999999999988887653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=2.2e-11  Score=109.55  Aligned_cols=180  Identities=13%  Similarity=0.055  Sum_probs=107.2

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCC---HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHS---PHLFHHILRRLIDPKLVVHVSRILELIEIQKCY--CPEDVALSVIQ   81 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~   81 (625)
                      .++..+..+|++++|+..|+.+++..  |.+   +.++..++.++.+.|++++|...|+.+++..|.  .....+..++.
T Consensus        20 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           20 ERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            44566667777777777777777655  444   667777777777777777777777777776542  12345666777


Q ss_pred             HHHc--------cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhh
Q 038112           82 AYGK--------NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLG  153 (625)
Q Consensus        82 ~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  153 (625)
                      ++..        .|++++|+..|+++...+|..+.+.       .+...+..+...    ....+..+...+.+.|++++
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~  166 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-------DATQKIRELRAK----LARKQYEAARLYERRELYEA  166 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHH
Confidence            7766        6777777777777666655544331       111111111110    01123455666667777777


Q ss_pred             HHHHHHHHHhCCCCC--CchhhHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 038112          154 ALAVFDEMFERGVET--NVVCYNILIDGFFKK----------GDYMRAKEIWERLVME  199 (625)
Q Consensus       154 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~  199 (625)
                      |+..|+++++..+..  ....+..++.++...          |++++|+..|+.+.+.
T Consensus       167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            777777776653221  123555666666654          6666777777766664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.34  E-value=8.4e-12  Score=114.07  Aligned_cols=217  Identities=12%  Similarity=0.019  Sum_probs=141.7

Q ss_pred             HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCCchhhHHHHHHHHhcCChhHHHHHHH
Q 038112          122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER------G-VETNVVCYNILIDGFFKKGDYMRAKEIWE  194 (625)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  194 (625)
                      +++++...+.+....++..+...+...|++++|+..++++.+.      + .+....++..++.++...|++++|.+.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  109 (283)
T 3edt_B           30 DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK  109 (283)
T ss_dssp             HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3444433332345677888999999999999999999998765      1 12235678889999999999999999999


Q ss_pred             HHHhC------CCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHH
Q 038112          195 RLVME------TSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN------E-REKDSFTYCSFIHGLCKAGNVEGAE  261 (625)
Q Consensus       195 ~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~  261 (625)
                      ++...      ...+....++..+...+...|++++|...+++....      . .+....++..+...+...|++++|.
T Consensus       110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            88764      111234557888888999999999999999888754      1 1123456777888888899999999


Q ss_pred             HHHHHHHHC-------CCCc-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          262 RVYREMVES-------GIFV-DAVTYNAMIDGFCRAGK------IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       262 ~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                      ..++++++.       ...+ ....+..+...+...+.      +..+...++......+....++..++.++...|+++
T Consensus       190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  269 (283)
T 3edt_B          190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLE  269 (283)
T ss_dssp             HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence            988888753       1111 22233333333333222      233333333333233335667777888888888888


Q ss_pred             HHHHHHHHHHH
Q 038112          328 EAISIWELLRE  338 (625)
Q Consensus       328 ~a~~~~~~~~~  338 (625)
                      +|...+++..+
T Consensus       270 ~A~~~~~~al~  280 (283)
T 3edt_B          270 AAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.33  E-value=3e-12  Score=103.58  Aligned_cols=147  Identities=11%  Similarity=0.004  Sum_probs=117.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .|+.++..+|++++|+..|+.+...+  |.++..+..++.+|.+.|++++|++.|+++++.+| .+..++..++.+|...
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELE   78 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            47888899999999999999998777  88888899999999999999999999999999974 5889999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH-HHHHHhCC
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV-FDEMFERG  165 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~  165 (625)
                      |++++|+..|+++.+..                            |.+..+|..+...+.+.|++++|... ++++.+..
T Consensus        79 ~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~  130 (150)
T 4ga2_A           79 ENTDKAVECYRRSVELN----------------------------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF  130 (150)
T ss_dssp             TCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred             CchHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence            99999999999885532                            34567778888888888888776554 57777764


Q ss_pred             CCCCchhhHHHHHHHHhcCC
Q 038112          166 VETNVVCYNILIDGFFKKGD  185 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~  185 (625)
                      + -++.+|......+...|+
T Consensus       131 P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          131 P-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             T-TCHHHHHHHHHHHHTCCC
T ss_pred             c-CCHHHHHHHHHHHHHhCc
Confidence            3 366777777777777664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.33  E-value=1.3e-10  Score=106.23  Aligned_cols=128  Identities=10%  Similarity=-0.031  Sum_probs=60.5

Q ss_pred             HHHHHHHHhcc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH------
Q 038112          471 YSLLINGLCQS-KKIDMALKLCCQFLQKGFT-PD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL------  538 (625)
Q Consensus       471 ~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------  538 (625)
                      +..+...|... |++++|+..+++.++.... .+    ..++..++.++...|++++|+..|+++.+.......      
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  199 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence            33444444443 5555555555554432100 00    234555566666666666666666666553211111      


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHh--hcCChHHHHHHHHHHH
Q 038112          539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII------SYNITLKGLC--SCSRMSDAFEFLNDAL  600 (625)
Q Consensus       539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~  600 (625)
                      ..+..++.++...|++++|+..|+++++  +.|+..      .+..++.++.  ..+++++|++.|+++.
T Consensus       200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            1345556666666666666666666655  444321      2233334443  2345666666655543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=1e-10  Score=106.87  Aligned_cols=167  Identities=11%  Similarity=0.050  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc--C-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC--
Q 038112           55 VHVSRILELIEIQKCYCPEDVALSVIQAYGKN--S-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK--  129 (625)
Q Consensus        55 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--  129 (625)
                      .+|.+++.++.+.-.+ ....+ .    +++.  + ++++|...|+++.       .++...|++++|...|++++..  
T Consensus         2 ~~a~~~~~~a~k~~~~-~~~~~-~----~~~~~~~~~~~~A~~~~~~a~-------~~~~~~g~~~~A~~~~~~al~~~~   68 (292)
T 1qqe_A            2 SDPVELLKRAEKKGVP-SSGFM-K----LFSGSDSYKFEEAADLCVQAA-------TIYRLRKELNLAGDSFLKAADYQK   68 (292)
T ss_dssp             CCHHHHHHHHHHHSSC-CCTHH-H----HHSCCSHHHHHHHHHHHHHHH-------HHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhCc-CCCcc-h----hcCCCCCccHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3577788888877432 21112 2    2233  2 5888888888873       2466778888888888877653  


Q ss_pred             --CCCC-CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-C----chhhHHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 038112          130 --GLKP-DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVET-N----VVCYNILIDGFFKK-GDYMRAKEIWERLVMET  200 (625)
Q Consensus       130 --~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~  200 (625)
                        +-++ ...+|+.+..++...|++++|+..|++.++..... +    ..++..++.+|... |++++|+..|++..+..
T Consensus        69 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~  148 (292)
T 1qqe_A           69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY  148 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence              2111 13567777777777777777777777766541110 0    12444455555553 55555555555544421


Q ss_pred             CCCCC----cchHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          201 SVYPN----VVTYNVMINGLCKCGRFDECLEMWDRMKK  234 (625)
Q Consensus       201 ~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  234 (625)
                      ....+    ..++..++..+.+.|++++|+..|++...
T Consensus       149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            00000    12334444444444444444444444444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.29  E-value=2.2e-09  Score=95.37  Aligned_cols=184  Identities=10%  Similarity=0.038  Sum_probs=95.2

Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112          121 RFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV-ETNVVCYNILIDGFFKKGDYMRAKEIWERLVME  199 (625)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  199 (625)
                      ..|++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++.+.+.
T Consensus        87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~  165 (310)
T 3mv2_B           87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA  165 (310)
T ss_dssp             HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3344434333 34444445556666666666666666666655543 124455556666666666666666666666553


Q ss_pred             CCCCC-----CcchHHHHHHH--HHhcC--ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          200 TSVYP-----NVVTYNVMING--LCKCG--RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       200 ~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                         .|     +..+...++.+  ....|  ++.+|..+|+++.+..  |+..+...++.++.+.|++++|.+.++.+.+.
T Consensus       166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               23     12333333333  22223  6666666666665432  23222223333566666666666666654432


Q ss_pred             C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 038112          271 G---------IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVS  312 (625)
Q Consensus       271 ~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  312 (625)
                      -         -+.++.++..++......|+  +|.++++++....|.++.+
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            0         01244555455544444554  5666666666665555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=1.7e-10  Score=103.82  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=81.2

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhh
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP---EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILC  111 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  111 (625)
                      +.++..+..++..+.+.|++++|...|+.+++..|. +   ...+..++.++.+.|++++|+..|+++...+|..+.   
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~---   87 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR---   87 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---
Confidence            778899999999999999999999999999998643 4   678899999999999999999999999776554322   


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh--------cCChhhHHHHHHHHHhC
Q 038112          112 RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK--------SGDLLGALAVFDEMFER  164 (625)
Q Consensus       112 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~  164 (625)
                                            ...++..+..++..        .|++++|+..|+++++.
T Consensus        88 ----------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           88 ----------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             ----------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence                                  23344555555555        66666666666666665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.26  E-value=4.2e-11  Score=103.18  Aligned_cols=99  Identities=5%  Similarity=-0.018  Sum_probs=81.8

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHH----------------HHHHhhCCCChhHHHHHHHHHHHhcCCC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHH----------------ILRRLIDPKLVVHVSRILELIEIQKCYC   71 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~   71 (625)
                      .+..+...|++++|+..|+.+++.+  |.++.++..                ++.++.+.|++++|...|+.+++.+| .
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~   86 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-N   86 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-C
Confidence            4567788999999999999998877  778888888                88888899999999999999998864 4


Q ss_pred             CHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           72 PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      +...+..++.++...|++++|+..|+++.+..|..+.+
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            78888889988888888888888888886655544433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.24  E-value=2.7e-09  Score=96.13  Aligned_cols=221  Identities=11%  Similarity=0.003  Sum_probs=136.9

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HccCCchH
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK--LVVHVSRILELIEIQKCYCPEDVALSVIQAY----GKNSMPDK   91 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~   91 (625)
                      .++|+..++.++..+  |....+|.....++...|  +++++++.+..++..+|. +..+|+.-..++    ...+    
T Consensus        49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~----  121 (306)
T 3dra_A           49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN----  121 (306)
T ss_dssp             SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT----
T ss_pred             CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc----
Confidence            356777777666666  666666666666666666  677777777777766543 555555544444    3330    


Q ss_pred             HHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh--hHHHHHHHHHhCCCCCC
Q 038112           92 ALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL--GALAVFDEMFERGVETN  169 (625)
Q Consensus        92 A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~  169 (625)
                                          ..+++++++.++++++..+ +.+..+|+.-..++.+.|.++  ++++.++++++.++. |
T Consensus       122 --------------------~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N  179 (306)
T 3dra_A          122 --------------------NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-N  179 (306)
T ss_dssp             --------------------TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-C
T ss_pred             --------------------ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-C
Confidence                                0033444445555555544 445666666666666666666  777777777766543 5


Q ss_pred             chhhHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCC
Q 038112          170 VVCYNILIDGFFKKGD------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDE-CLEMWDRMKKNE--REKD  240 (625)
Q Consensus       170 ~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~  240 (625)
                      ...|+.-..++...+.      ++++++.++.++..  .+.|..+|+.+...+.+.|+... +..+.+++...+  ...+
T Consensus       180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s  257 (306)
T 3dra_A          180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS  257 (306)
T ss_dssp             HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred             HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence            5566666555555555      67777777777765  35666677777777777766444 444555554432  1245


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          241 SFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      +..+..++..+.+.|+.++|.++++.+.+
T Consensus       258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          258 SFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            66677777777777888888888888775

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.23  E-value=6.9e-11  Score=98.84  Aligned_cols=159  Identities=9%  Similarity=0.037  Sum_probs=83.7

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY-GK   85 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~   85 (625)
                      .++.++...|++++|+..|+.+++.+  |.++.++..++.++...|++++|...++.++...|  ++.....++... ..
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence            34555566666666666666666555  56666666666666666666666666666655543  333222221111 01


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      .++.                           .+|+..|++++..+ |.+...+..+...+...|++++|...|+++.+..
T Consensus        87 ~~~~---------------------------~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           87 QAAE---------------------------SPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHTS---------------------------CHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hccc---------------------------chHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            1111                           12333344444433 3345556666666666666666666666666554


Q ss_pred             CCC-CchhhHHHHHHHHhcCChhHHHHHHHHHH
Q 038112          166 VET-NVVCYNILIDGFFKKGDYMRAKEIWERLV  197 (625)
Q Consensus       166 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  197 (625)
                      +.+ +...+..++.++...|+.++|...|++..
T Consensus       139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            322 23455556666666666666666665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.23  E-value=3.2e-10  Score=99.08  Aligned_cols=184  Identities=8%  Similarity=-0.023  Sum_probs=128.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCC-CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPG-YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE--DVALSVIQA   82 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~   82 (625)
                      -.++..+..+|++++|+..|+.+++..+ .+..+.++..++.++.+.|++++|+..|+++++..|....  ..+..++.+
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence            3467788899999999999999887652 2333578889999999999999999999999998754322  356667776


Q ss_pred             HHc------------------cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 038112           83 YGK------------------NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVING  144 (625)
Q Consensus        83 ~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  144 (625)
                      +..                  .|++++|+..|+++.+.+|..+.+..       |...+..+...    .......+...
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~-------a~~~l~~~~~~----~~~~~~~~a~~  156 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD-------ATKRLVFLKDR----LAKYEYSVAEY  156 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH-------HHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH-------HHHHHHHHHHH----HHHHHHHHHHH
Confidence            654                  45566666666666555555443311       11111111100    01112345677


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCC--CchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112          145 LVKSGDLLGALAVFDEMFERGVET--NVVCYNILIDGFFKKGDYMRAKEIWERLVMET  200 (625)
Q Consensus       145 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  200 (625)
                      +.+.|++++|+..|+++++..+..  ....+..++.++.+.|++++|++.++.+...+
T Consensus       157 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          157 YTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            889999999999999999873221  12568889999999999999999999988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=1.4e-10  Score=119.24  Aligned_cols=167  Identities=9%  Similarity=-0.011  Sum_probs=105.9

Q ss_pred             hCCCChhHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch-------hhhc
Q 038112           49 IDPKLVVHVSRILELIE--------IQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-------LCRK  113 (625)
Q Consensus        49 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~  113 (625)
                      ...|++++|++.+++++        +.. |.+...+..++.++...|++++|+..|+++.+..|....+       +...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            45566666666666665        333 2345555556666666666666666666665555555444       4455


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      |++++|+..|+++++.+ +.+...|..+..++.+.|++++ +..|+++.+.++. +...|..++.++.+.|++++|++.|
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666666654 4456677777788888888888 8888888776433 6667788888888888888888888


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGR  221 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~  221 (625)
                      +++.+..  +.+..++..+..++...++
T Consensus       558 ~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HhhcccC--cccHHHHHHHHHHHHccCC
Confidence            8777653  3345566667766665444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.22  E-value=6.1e-09  Score=92.54  Aligned_cols=172  Identities=9%  Similarity=-0.019  Sum_probs=110.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-----CHh
Q 038112          396 LNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGC-SPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKP-----DMI  469 (625)
Q Consensus       396 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~  469 (625)
                      ++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+.  .|     +..
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~  175 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE  175 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence            3444455677777788888888888887765543 124556677777788888888888888888763  45     245


Q ss_pred             hHHHHHHHH--hccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C----CCC
Q 038112          470 TYSLLINGL--CQSK--KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR-----N----CVP  536 (625)
Q Consensus       470 ~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~  536 (625)
                      +...++.++  ...|  ++..|..+|+++.+.  .|+......+..++...|++++|...++.+.+.     +    -+.
T Consensus       176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~  253 (310)
T 3mv2_B          176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY  253 (310)
T ss_dssp             HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence            555555553  2223  778888888887664  344223233333677788888888888765542     0    033


Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 038112          537 NLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIIS  575 (625)
Q Consensus       537 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  575 (625)
                      |+.++..++.+....|+  +|.++++++.+  ..|+...
T Consensus       254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~  288 (310)
T 3mv2_B          254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF  288 (310)
T ss_dssp             HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred             CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence            56666566666666676  77788888877  6675543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.22  E-value=1.1e-10  Score=97.71  Aligned_cols=128  Identities=13%  Similarity=-0.001  Sum_probs=98.6

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHH-hhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRR-LIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      ..++.++..+|++++|+..|+.++...  | ++..+...+.. +...+...+|...++.+++.+| .+...+..++.++.
T Consensus        44 ~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~  119 (176)
T 2r5s_A           44 LAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            567899999999999999999998877  6 66655544433 2233344568999999999874 58899999999999


Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      ..|++++|+..|+++.+..|.                          ..+...+..+...+...|+.++|...|++.+.
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLG--------------------------AQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTT--------------------------TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcc--------------------------cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999988543221                          12345777888888888999888888887654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.21  E-value=2.3e-09  Score=92.48  Aligned_cols=175  Identities=14%  Similarity=0.032  Sum_probs=109.6

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccC----CHHHHHHHHH
Q 038112          417 AIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSK----KIDMALKLCC  492 (625)
Q Consensus       417 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~  492 (625)
                      |.+.|++..+.   .++..+..+...|...+++++|+.+|++..+.|   +...+..+...|.. +    ++++|.+.|+
T Consensus         5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            44555555554   255566666666666667777777777666643   44555556665655 4    6777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----cCChhHHHHHHHH
Q 038112          493 QFLQKGFTPDVTMYNILIHGLCS----AGKVEDALQLYSNMKKRNCV-PNLVTYNTLMDGLFK----TGDCDKALEIWNH  563 (625)
Q Consensus       493 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~  563 (625)
                      +..+.|   +...+..|..+|..    .+++++|+.+|++..+.+.. .++..+..|+..|..    .+++++|+.+|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            776643   45566666666665    66777777777777765311 125666677777766    6677777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhhc-C-----ChHHHHHHHHHHHHCC
Q 038112          564 ILEERLRPDIISYNITLKGLCSC-S-----RMSDAFEFLNDALCRG  603 (625)
Q Consensus       564 ~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  603 (625)
                      +.+.  .++...+..+...|... |     ++++|.+++++..+.|
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            7763  33445566666666543 2     6777777777777655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.20  E-value=9.3e-10  Score=96.15  Aligned_cols=180  Identities=13%  Similarity=0.092  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---hh
Q 038112           37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---LC  111 (625)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~  111 (625)
                      ++..+..++..+.+.|++++|+..|+.+++..|..+  ...+..++.++.+.|++++|+..|+++.+.+|..+.+   +.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            467788899999999999999999999999865432  4688899999999999999999999999988887653   11


Q ss_pred             -------------------------hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112          112 -------------------------RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus       112 -------------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                                               ..|++++|+..|++++... |.+..++.......          .+...+     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence                                     1244555555555555443 22222221111000          000000     


Q ss_pred             CCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCc---chHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112          167 ETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNV---VTYNVMINGLCKCGRFDECLEMWDRMKKNER  237 (625)
Q Consensus       167 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  237 (625)
                         ......++..+.+.|++++|+..|+.+.+..  |.+.   .++..++.++.+.|++++|.+.++.+...++
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence               0012456788999999999999999999863  2222   4688899999999999999999999988754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.19  E-value=5.5e-10  Score=101.53  Aligned_cols=168  Identities=10%  Similarity=-0.029  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcC
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKR  114 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  114 (625)
                      |.++..+..++..+.+.|++++|...|++++...| .+...+..++.++...|++++|...+++++...|          
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----------  182 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----------  182 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----------
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----------
Confidence            66778888888888899999999999999998874 4778888899999999999999998888755333          


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYS-YGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                                         +... .......+...++.+.|+..+++..+.. |.+...+..++..+...|++++|+..|
T Consensus       183 -------------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l  242 (287)
T 3qou_A          183 -------------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELL  242 (287)
T ss_dssp             -------------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHH
Confidence                               2221 2222223445556666666666666653 235566666666666777777777776


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMK  233 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  233 (625)
                      .++.+..+...+...+..++..+...|+.++|...+++..
T Consensus       243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            6666653222224566666666666777776666666543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.19  E-value=1.7e-09  Score=93.08  Aligned_cols=125  Identities=10%  Similarity=0.057  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038112          282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYL  361 (625)
Q Consensus       282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  361 (625)
                      +..+|.+.|++++|+..|+......|.+..++..+..++...|++++|+..|+++.+..+. +...+..+...+...|..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence            7777788888888888888888887778888888888888888888888888888777543 556666666666544432


Q ss_pred             H--HHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038112          362 N--KAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK  427 (625)
Q Consensus       362 ~--~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  427 (625)
                      +  .+...+.                  ...  ...|....+.....++...|++++|...|++..+.
T Consensus       139 ~~~~~~~~~~------------------~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          139 EKKKLETDYK------------------KLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHC-----------------------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH------------------HHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            2  2222222                  111  12222233344455555667777777777777664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.19  E-value=1.3e-10  Score=93.80  Aligned_cols=144  Identities=11%  Similarity=-0.070  Sum_probs=77.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 038112          177 IDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGN  256 (625)
Q Consensus       177 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  256 (625)
                      +.++...|++++|++.++.....  .+.+...+..+..+|.+.|++++|++.|++..+..+ .+..+|..+..++...|+
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence            33444455566666666555443  122333445555666666666666666666555443 345556666666666666


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112          257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFEL-WEVMGRKGCLNVVSYNILIRGLLENG  324 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (625)
                      +++|+..|++.++..+. +..++..+..+|.+.|+++++.+. ++.+.+..|.++.+|......+...|
T Consensus        81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            66666666666554322 455555666666666665544433 35555555556666555555555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.18  E-value=4.7e-10  Score=115.23  Aligned_cols=174  Identities=10%  Similarity=-0.018  Sum_probs=140.0

Q ss_pred             HhcCChhHHHHHHHHHH--------hCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038112          181 FKKGDYMRAKEIWERLV--------METSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLC  252 (625)
Q Consensus       181 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  252 (625)
                      ...|++++|++.+++..        +.  .+.+...+..+...+...|++++|+..|++..+..+ .+...|..+..++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence            67899999999999887        43  345667788888899999999999999998887654 46778888889999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 038112          253 KAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISI  332 (625)
Q Consensus       253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  332 (625)
                      ..|++++|+..|+++++..+. +...+..+..++.+.|++++ ++.|+++.+.+|.+..+|..+..++...|++++|+..
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999887543 67888889999999999999 9999999998888999999999999999999999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038112          333 WELLREKNCNADSTTHGVLINGLCKNGY  360 (625)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~  360 (625)
                      |+++.+.++. +...+..+..++...++
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            9888876432 34556666666655444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.18  E-value=2.5e-08  Score=89.77  Aligned_cols=240  Identities=8%  Similarity=-0.027  Sum_probs=185.0

Q ss_pred             HHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC--CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHH
Q 038112           46 RRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS--MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRF  122 (625)
Q Consensus        46 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  122 (625)
                      .+..+.| ..++|+++++.++..+| .+..+++.-..++...|  ++++++..++.+...+|...               
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------------  103 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------------  103 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------
Confidence            3333444 45689999999999975 47888888888888888  77777777777765544433               


Q ss_pred             HHHHHHCCCCCCHhHHHHHHHHH----Hhc---CChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh--HHHHHH
Q 038112          123 LNSLWEKGLKPDVYSYGTVINGL----VKS---GDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM--RAKEIW  193 (625)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~  193 (625)
                                   .+|+.-...+    ...   +++++++.+++++.+..++ +..+|..-.-++...|.++  ++++.+
T Consensus       104 -------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~  169 (306)
T 3dra_A          104 -------------QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFV  169 (306)
T ss_dssp             -------------HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHH
Confidence                         3344433333    333   7889999999999998544 7788888888888889888  999999


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCC------hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHH
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGR------FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEG-AERVYRE  266 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~  266 (625)
                      +.+.+.+  +.|..+|+....++...+.      ++++++.++++....+ .|...|+.+...+.+.|+... +.....+
T Consensus       170 ~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          170 DKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             HHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            9999874  6788889888877877776      8999999999988775 588889888888888887444 5566666


Q ss_pred             HHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHH
Q 038112          267 MVESG--IFVDAVTYNAMIDGFCRAGKIKECFELWEVMGR-KGCLNVVSYNILIR  318 (625)
Q Consensus       267 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~l~~  318 (625)
                      +.+.+  -..++..+..++.+|.+.|+.++|.++++.+.. .+|.....|+..+.
T Consensus       247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence            65533  134788899999999999999999999999987 57778888876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.17  E-value=1.3e-07  Score=92.46  Aligned_cols=196  Identities=9%  Similarity=-0.051  Sum_probs=131.6

Q ss_pred             HHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC----
Q 038112          388 RMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG----  463 (625)
Q Consensus       388 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----  463 (625)
                      ..... .+.++..|...+..+.+.|+.+.|..+|++....  +.+...|...    ....+.++.   ++.+.+.-    
T Consensus       204 ~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y----~~~~e~~~~---~~~l~~~~~~~~  273 (493)
T 2uy1_A          204 YILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYY----GLVMDEEAV---YGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHH----HHHTTCTHH---HHHHHHHTC---
T ss_pred             HHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHH----HhhcchhHH---HHHHHHHHHhhc
Confidence            44443 2345778888888899999999999999999987  3333333322    221111122   22222210    


Q ss_pred             -----CCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCC
Q 038112          464 -----WKP---DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG-KVEDALQLYSNMKKRNC  534 (625)
Q Consensus       464 -----~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~  534 (625)
                           ..+   ....|...+....+.++.+.|..+|+++ .. ...+...|...+..-...+ +++.|..+|+...+. .
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~  350 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-H  350 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-C
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C
Confidence                 001   1244666666666788899999999999 42 2235556654443333333 699999999999986 3


Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +.++..+...+......|+.+.|..+|+++.     .....|...+..-...|+.+.+.++++++.+
T Consensus       351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4456667777888888999999999999973     2567777777777778999999999988874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.13  E-value=3.5e-09  Score=83.95  Aligned_cols=129  Identities=17%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 038112          209 YNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCR  288 (625)
Q Consensus       209 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  288 (625)
                      |..++..+...|++++|..+++++....+ .+...+..++..+...|++++|...++++...+. .+...+..++..+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence            44555556666666666666666554432 2445555566666666666666666666655432 245556666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          289 AGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      .|++++|.+.++.+....+.+..++..++..+...|++++|...++.+...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            666777766666666666666666666667777777777777776666654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.13  E-value=6.8e-09  Score=89.49  Aligned_cols=175  Identities=11%  Similarity=0.021  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC----ChhHHHHHH
Q 038112          118 KAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG----DYMRAKEIW  193 (625)
Q Consensus       118 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~  193 (625)
                      +|+.+|++..+.+   ++.++..+...+...+++++|+..|++..+.|   ++..+..+..+|.. +    ++++|.+.|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            3555566655543   55666666666666677777777777666653   44556666666655 4    666666666


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHh----cCChhhHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHH
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCK----CGRFDECLEMWDRMKKNERE-KDSFTYCSFIHGLCK----AGNVEGAERVY  264 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  264 (625)
                      ++..+.+    +..++..+...|..    .+++++|+.+|++..+.+.. .++..+..|...|..    .+++++|+..|
T Consensus        77 ~~A~~~g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           77 EKAVEAG----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHTT----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHCC----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            6665432    44455555555555    55666666666666544321 014455555555555    55566666666


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhc
Q 038112          265 REMVESGIFVDAVTYNAMIDGFCRA-G-----KIKECFELWEVMGRK  305 (625)
Q Consensus       265 ~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~  305 (625)
                      ++..+.  ..+...+..+..+|... |     ++++|..+|+.....
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            655554  11333444455554432 1     555555555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=1.4e-09  Score=100.08  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=46.6

Q ss_pred             CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHC
Q 038112           51 PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK-NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEK  129 (625)
Q Consensus        51 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  129 (625)
                      .|++.+|.++++++.+.... .          +.+ .+++++|...|+++.       .++...|++++|...|.++...
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a~-------~~~~~~g~~~~A~~~~~~al~~   65 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKAA-------VAFKNAKQLEQAKDAYLQEAEA   65 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHHH
Confidence            45666677777766665421 1          112 466666666666652       2344556666666666655432


Q ss_pred             CC---CC--CHhHHHHHHHHHHhcCChhhHHHHHHHHH
Q 038112          130 GL---KP--DVYSYGTVINGLVKSGDLLGALAVFDEMF  162 (625)
Q Consensus       130 ~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  162 (625)
                      ..   .+  -..+|+.+...+...|++++|+..|++..
T Consensus        66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al  103 (307)
T 2ifu_A           66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS  103 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            10   00  02234444444444444444444444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.12  E-value=3.3e-09  Score=84.09  Aligned_cols=127  Identities=19%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK  550 (625)
Q Consensus       471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  550 (625)
                      +..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++++...+ +.+...+..++.++..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            3344445555555555555555555432 2244555555555555666666666666555542 3345555556666666


Q ss_pred             cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          551 TGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       551 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .|++++|..+++++.+  ..| +...+..++..+.+.|++++|.+.++++.+
T Consensus        82 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666666655  223 345555555666666666666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=1.1e-09  Score=99.68  Aligned_cols=161  Identities=12%  Similarity=-0.005  Sum_probs=73.4

Q ss_pred             hhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhh-HHHHHH
Q 038112          171 VCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFT-YCSFIH  249 (625)
Q Consensus       171 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~  249 (625)
                      ..+..++..+...|++++|...|+++.+..  |.+...+..+..++.+.|++++|...++++....+  +... ......
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~~  193 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHHH
Confidence            334444444445555555555555444432  22334444444555555555555555544443321  2111 111112


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHH
Q 038112          250 GLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN--VVSYNILIRGLLENGKVD  327 (625)
Q Consensus       250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~  327 (625)
                      .+...++.++|+..+++.+...+. +...+..+...+...|++++|++.|..+.+..|.+  ..++..++..+...|+.+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            233344444445555554444322 44445555555555555555555555555544443  445555555555555555


Q ss_pred             HHHHHHHHH
Q 038112          328 EAISIWELL  336 (625)
Q Consensus       328 ~a~~~~~~~  336 (625)
                      +|...+++.
T Consensus       273 ~a~~~~r~a  281 (287)
T 3qou_A          273 ALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             cHHHHHHHH
Confidence            555544443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.09  E-value=1.1e-09  Score=110.63  Aligned_cols=147  Identities=11%  Similarity=-0.032  Sum_probs=99.4

Q ss_pred             cCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHH
Q 038112           15 EKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALD   94 (625)
Q Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~   94 (625)
                      +|++++|+..|+.+++..  |.++.++..++..+...|++++|.+.|+++++.++ .+...+..++.++...|++++|..
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            588999999999999887  88999999999999999999999999999999874 578899999999999999999999


Q ss_pred             HHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 038112           95 VFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKS---GDLLGALAVFDEMFER  164 (625)
Q Consensus        95 ~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  164 (625)
                      .|+++.+..|..+.+       +...|++++|...|+++++.+ +.+...+..+...+...   |+.++|...++++.+.
T Consensus        79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            999997766655443       555666666666666666554 34455566666666666   6666666666666655


Q ss_pred             C
Q 038112          165 G  165 (625)
Q Consensus       165 ~  165 (625)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.09  E-value=1.1e-09  Score=85.23  Aligned_cols=101  Identities=9%  Similarity=-0.081  Sum_probs=85.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+.++|++++|+..|+.+++.+  |.++.++..++.++.+.|++++|+..++.+++.++ .+...+..++.++..
T Consensus        17 ~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           17 KNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence            457788888999999999999988887  88889999999999999999999999999998874 478888889999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcch
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      .|++++|+..|+++.+..|..+.+
T Consensus        94 ~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           94 MREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHH
Confidence            999999999998887766655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.04  E-value=2.2e-09  Score=98.81  Aligned_cols=228  Identities=5%  Similarity=-0.056  Sum_probs=147.7

Q ss_pred             ccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112           85 KNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                      ..|++++|.+++++..+..+..  .+...+++++|...|+++               +..+...|++++|...|.++.+.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~--~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~   65 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS--FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEA   65 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC--SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc--ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567778888888776655531  121157788888777765               33566778888888888777654


Q ss_pred             CCCC-----CchhhHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC-CCcchHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          165 GVET-----NVVCYNILIDGFFKKGDYMRAKEIWERLVMET---SVY-PNVVTYNVMINGLCKCGRFDECLEMWDRMKKN  235 (625)
Q Consensus       165 ~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  235 (625)
                      ....     -..+|..++.+|...|++++|+..|++..+..   +.+ ....++..+..+|.. |++++|+..|++....
T Consensus        66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~  144 (307)
T 2ifu_A           66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV  144 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence            2111     13467778888888888888888887765431   011 123567777778877 8888888888877643


Q ss_pred             CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          236 EREK-----DSFTYCSFIHGLCKAGNVEGAERVYREMVES----GIFVD-AVTYNAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       236 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      ....     ...++..+...+...|++++|+..|++.+..    +..+. ...+..++.++...|++++|...|++.. .
T Consensus       145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~  223 (307)
T 2ifu_A          145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S  223 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred             HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence            2111     1346777888888888888888888887763    11111 2356667777778888888888888887 6


Q ss_pred             CCCc-----HHHHHHHHHHHHhCCCHHHHHHH
Q 038112          306 GCLN-----VVSYNILIRGLLENGKVDEAISI  332 (625)
Q Consensus       306 ~~~~-----~~~~~~l~~~~~~~~~~~~a~~~  332 (625)
                      .|..     ......++..+ ..|+.+....+
T Consensus       224 ~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          224 IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            5531     12344455544 56776666553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.02  E-value=1.7e-09  Score=86.53  Aligned_cols=104  Identities=10%  Similarity=0.039  Sum_probs=78.9

Q ss_pred             HHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhh
Q 038112           24 LFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIF  103 (625)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  103 (625)
                      .|+.++..+  |.++.++..++..+.+.|++++|...|+.++..+| .+...+..++.+|...|++++|+..|+++....
T Consensus        24 ~l~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           24 TLKDINAIP--DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CTGGGCCSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHhCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            345555555  77777778888888888888888888888887763 477777888888888888888888888887777


Q ss_pred             CCCcch-------hhhcCChHHHHHHHHHHHHCC
Q 038112          104 GCEAGI-------LCRKRQFEKAKRFLNSLWEKG  130 (625)
Q Consensus       104 ~~~~~~-------~~~~~~~~~A~~~~~~~~~~~  130 (625)
                      |..+.+       +...|++++|+..|++++...
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            777766       667788888888888877764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.00  E-value=5.8e-10  Score=89.32  Aligned_cols=96  Identities=7%  Similarity=-0.122  Sum_probs=69.9

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++.++..+|++++|+..|+.++..+  |.++.+|..++.++...|++++|...|+++++.+| .++..+..++.+|...
T Consensus        41 ~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           41 SYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence            45666777777777777777777766  77777777777777777777777777777777764 3666777777777777


Q ss_pred             CCchHHHHHHHHhHHhhCC
Q 038112           87 SMPDKALDVFQRMNEIFGC  105 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~  105 (625)
                      |++++|+..|+++....|.
T Consensus       118 g~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          118 KAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             TCHHHHHHHHHHHHHHCCC
T ss_pred             CCHHHHHHHHHHHHHhCCC
Confidence            7777777777777665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.99  E-value=6e-08  Score=88.13  Aligned_cols=227  Identities=10%  Similarity=0.004  Sum_probs=123.8

Q ss_pred             HHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-C
Q 038112           10 NLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN-S   87 (625)
Q Consensus        10 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~   87 (625)
                      .++...+..++|+..++.++..+  |.+..+|.....++...| .++++++.++.++..+| .+..+|+.-..++... +
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~  138 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISP  138 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcC
Confidence            34445555567777777777776  777777777777776666 47777777777777764 3667777666666555 5


Q ss_pred             -CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChh--------hHHHHH
Q 038112           88 -MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLL--------GALAVF  158 (625)
Q Consensus        88 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~  158 (625)
                       ++++++..++++....|.+..+                            |+.-..++.+.+.++        ++++.+
T Consensus       139 ~~~~~EL~~~~k~L~~dpkNy~A----------------------------W~~R~wvl~~l~~~~~~~~~~~~eELe~~  190 (349)
T 3q7a_A          139 QDPVSEIEYIHGSLLPDPKNYHT----------------------------WAYLHWLYSHFSTLGRISEAQWGSELDWC  190 (349)
T ss_dssp             SCCHHHHHHHHHHTSSCTTCHHH----------------------------HHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCCCHHH----------------------------HHHHHHHHHHhccccccchhhHHHHHHHH
Confidence             6666666666665554444444                            333333333333333        445555


Q ss_pred             HHHHhCCCCCCchhhHHHHHHHHhcCC-------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCCh---------
Q 038112          159 DEMFERGVETNVVCYNILIDGFFKKGD-------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRF---------  222 (625)
Q Consensus       159 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---------  222 (625)
                      +++++.++. |...|+....++.+.+.       ++++++.+++.+..  .+.|..+|+.+-..+.+.|..         
T Consensus       191 ~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~  267 (349)
T 3q7a_A          191 NEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAIL  267 (349)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHG
T ss_pred             HHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence            555544322 44444444444444443       34555555554443  233444454444444443332         


Q ss_pred             -----------hhHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          223 -----------DECLEMWDRMKKNE-----REKDSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       223 -----------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                                 ....+....+....     ..+++.....++..|...|+.++|.++++.+.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          268 PYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             GGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                       22222222222211     1245666677777777777778888888777644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.98  E-value=3.1e-09  Score=96.20  Aligned_cols=186  Identities=11%  Similarity=-0.062  Sum_probs=126.2

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+..+|++++|+..|+.++...  |.++.++..++.++.+.|++++|...++.+++.+ |.+...+..++.++..
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            567889999999999999999999887  8899999999999999999999999999999986 4588899999999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhh----hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILC----RKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      .|++++|...|+++....|..+..+.    .......+... ........+.+......+...  ..|++++|++.++.+
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~a  161 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERELEECQRN  161 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGG
T ss_pred             cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhh
Confidence            99999999999998876664432211    11111111111 122222333444443333222  256667777776666


Q ss_pred             HhCCCCCCchhhHHHHHHHHhc-CChhHHHHHHHHHHh
Q 038112          162 FERGVETNVVCYNILIDGFFKK-GDYMRAKEIWERLVM  198 (625)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~  198 (625)
                      .+..+ .+......+...+.+. +.+++|.++|..+.+
T Consensus       162 l~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          162 HEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             GTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             hcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            65421 1233333333334333 556667777766554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=1.3e-08  Score=102.93  Aligned_cols=165  Identities=13%  Similarity=0.028  Sum_probs=120.2

Q ss_pred             cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHH
Q 038112          148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLE  227 (625)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  227 (625)
                      .|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.+++..+..  +.+...+..+..++...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            477888999999888764 3367788888899999999999999999988763  4566788888889999999999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 038112          228 MWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA---GKIKECFELWEVMGR  304 (625)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  304 (625)
                      .+++..+..+ .+...+..+...+...|++++|.+.|++..+.... +...+..+..++...   |++++|.+.+++...
T Consensus        79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            9998887654 46778888888999999999999999998886433 677888888888888   899999999999888


Q ss_pred             cCCCcHHHHHHHH
Q 038112          305 KGCLNVVSYNILI  317 (625)
Q Consensus       305 ~~~~~~~~~~~l~  317 (625)
                      .++.+...+..+.
T Consensus       157 ~~p~~~~~~~~l~  169 (568)
T 2vsy_A          157 QGVGAVEPFAFLS  169 (568)
T ss_dssp             HTCCCSCHHHHTT
T ss_pred             cCCcccChHHHhC
Confidence            8887766666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.95  E-value=1.8e-08  Score=78.17  Aligned_cols=95  Identities=21%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG  582 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~  582 (625)
                      ..+...+..|.+.|++++|+..|+++++.. +.+..+|..++.++...|++++|+..++++++  +.| +...|..++.+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence            345555666666666666666666666542 33456666666666666666666666666666  444 34556666666


Q ss_pred             HhhcCChHHHHHHHHHHHH
Q 038112          583 LCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       583 ~~~~g~~~~A~~~~~~~~~  601 (625)
                      |...|++++|++.|++.++
T Consensus        91 ~~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            6666666666666666664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.95  E-value=7.9e-09  Score=82.57  Aligned_cols=98  Identities=8%  Similarity=-0.089  Sum_probs=69.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++..+..+|++++|+..|+.++..+  |.++..|..++.++...|++++|...|+.++..+| .++..+..++.++...
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence            35566677777777777777777666  67777777777777777777777777777777753 4666677777777777


Q ss_pred             CCchHHHHHHHHhHHhhCCCc
Q 038112           87 SMPDKALDVFQRMNEIFGCEA  107 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~  107 (625)
                      |++++|+..|+++....|..+
T Consensus       100 g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A          100 GDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCG
T ss_pred             CCHHHHHHHHHHHHHhCCCCc
Confidence            777777777777766555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.95  E-value=6.5e-09  Score=83.48  Aligned_cols=98  Identities=6%  Similarity=-0.107  Sum_probs=66.0

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++.++..+|++++|+..|+.++..+  |.++.+|..++.++...|++++|+..|+.++..+| .+...+..++.+|...
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            35566667777777777777766666  66677777777777777777777777777776653 3556666677777777


Q ss_pred             CCchHHHHHHHHhHHhhCCCc
Q 038112           87 SMPDKALDVFQRMNEIFGCEA  107 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~  107 (625)
                      |++++|+..|+++....|..+
T Consensus       103 g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A          103 GELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCG
T ss_pred             CCHHHHHHHHHHHHHHCcCCC
Confidence            777777777776666555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=1.7e-07  Score=85.57  Aligned_cols=166  Identities=13%  Similarity=0.085  Sum_probs=123.7

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCC---CCC--HH
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDM-----ITYSLLINGLCQSKKIDMALKLCCQFLQKGF---TPD--VT  504 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~--~~  504 (625)
                      .+...+..+...|++++|...+.+..+.......     ..+..+...+...|++++|...+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455666778889999999999888775322111     2234456667788999999999999886321   122  55


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcC----CCC-CH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKR--NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEER----LRP-DI  573 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~  573 (625)
                      +++.++..|...|++++|..+++++.+.  ..+.+    ..++..++.+|...|++++|+.+++++++..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            8889999999999999999999998732  01111    2588999999999999999999999988721    111 15


Q ss_pred             HHHHHHHHHHhhcCChHHH-HHHHHHHH
Q 038112          574 ISYNITLKGLCSCSRMSDA-FEFLNDAL  600 (625)
Q Consensus       574 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~  600 (625)
                      .++..++.+|.+.|++++| ...+++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6788899999999999999 77788775

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.94  E-value=2.3e-09  Score=93.90  Aligned_cols=190  Identities=6%  Similarity=-0.099  Sum_probs=116.3

Q ss_pred             ccCChhHHHHHHHhhccCCCCCCCHHHHHHH-------HHHhhCCCChhHHHHHHHHHHHhcCC----------------
Q 038112           14 AEKNPHTALALFDSATREPGYAHSPHLFHHI-------LRRLIDPKLVVHVSRILELIEIQKCY----------------   70 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~----------------   70 (625)
                      ..++++.|...|..+.+.+  |....+|..+       +.++.+.++..++...+...+...+.                
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5788889999999888888  8888888888       67777777777777777777663210                


Q ss_pred             ----CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 038112           71 ----CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLV  146 (625)
Q Consensus        71 ----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (625)
                          ...++...++.++...|++++|.++|+.+...                           +  |+......+...+.
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---------------------------~--p~~~~~~~~a~l~~  146 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---------------------------G--SEHLVAWMKAVVYG  146 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---------------------------T--CHHHHHHHHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------C--CchHHHHHHHHHHH
Confidence                01345556667777777777777777766332                           2  22224444444566


Q ss_pred             hcCChhhHHHHHHHHHhCCCCC--CchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC--cchHHHHHHHHHhcCCh
Q 038112          147 KSGDLLGALAVFDEMFERGVET--NVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN--VVTYNVMINGLCKCGRF  222 (625)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~  222 (625)
                      +.+++++|+..|+...... .|  ....+..+..++...|++++|+..|++..... ..|.  .........++.+.|+.
T Consensus       147 ~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          147 AAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             HTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             HcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCH
Confidence            6666666666666443321 11  02345566666666666666666666665321 2132  22445555666666666


Q ss_pred             hhHHHHHHHHHhCC
Q 038112          223 DECLEMWDRMKKNE  236 (625)
Q Consensus       223 ~~a~~~~~~~~~~~  236 (625)
                      ++|..+|+++....
T Consensus       225 deA~~~l~~a~a~~  238 (282)
T 4f3v_A          225 SAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC
Confidence            66666666666553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.93  E-value=6.6e-08  Score=83.65  Aligned_cols=131  Identities=11%  Similarity=-0.091  Sum_probs=94.9

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038112          435 SYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLC  514 (625)
Q Consensus       435 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  514 (625)
                      .+..+...+...|++++|...+++..    .|+...+..+...+...|++++|...+++.++.. +.+...+..++.+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            34455666777788888888777663    4566777777778888888888888888777753 345677777788888


Q ss_pred             cCCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          515 SAGKVEDALQLYSNMKKRNCVPNL----------------VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       515 ~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      ..|++++|...|+++.+.. +.+.                ..+..++.++...|++++|...|+++++  +.|+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred             HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence            8888888888888877752 2222                6777778888888888888888888777  55643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.92  E-value=5.3e-07  Score=81.96  Aligned_cols=241  Identities=7%  Similarity=-0.050  Sum_probs=172.0

Q ss_pred             HHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHH
Q 038112           46 RRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS-MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLN  124 (625)
Q Consensus        46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  124 (625)
                      ..+......++|+++++.++..+| .+..+++.-..++...| ++++++..++.+                         
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~-------------------------  115 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEF-------------------------  115 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHH-------------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------------------------
Confidence            344455566788888888888874 47777777777776666 355555555555                         


Q ss_pred             HHHHCCCCCCHhHHHHHHHHHHhc-C-ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChh--------HHHHHHH
Q 038112          125 SLWEKGLKPDVYSYGTVINGLVKS-G-DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYM--------RAKEIWE  194 (625)
Q Consensus       125 ~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~  194 (625)
                        +..+ +.+..+|+.-...+.+. + ++++++..++++.+..+. +..+|..-.-++.+.|.++        ++++.++
T Consensus       116 --L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~  191 (349)
T 3q7a_A          116 --AVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN  191 (349)
T ss_dssp             --HHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             --HHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence              5544 45677777777777666 6 889999999999988544 6777777666666666666        8999999


Q ss_pred             HHHhCCCCCCCcchHHHHHHHHHhcCC-------hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH----------
Q 038112          195 RLVMETSVYPNVVTYNVMINGLCKCGR-------FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNV----------  257 (625)
Q Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------  257 (625)
                      ++.+..  +.|..+|+....++.+.+.       ++++++.+++.....+ .|...|+.+-..+.+.|..          
T Consensus       192 k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~  268 (349)
T 3q7a_A          192 EMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILP  268 (349)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred             HHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccc
Confidence            998874  6788899998888888876       6899999999887765 4777887766666665543          


Q ss_pred             ----------HHHHHHHHHHHHCC-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCcHHHHHHHHHH
Q 038112          258 ----------EGAERVYREMVESG-----IFVDAVTYNAMIDGFCRAGKIKECFELWEVMG-RKGCLNVVSYNILIRG  319 (625)
Q Consensus       258 ----------~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~  319 (625)
                                ........++...+     ..+++..+..++..|...|+.++|.++++.+. +.+|.....|...+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence                      33444444443322     13578889999999999999999999999997 4455577777766544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.92  E-value=5.2e-09  Score=80.64  Aligned_cols=99  Identities=7%  Similarity=-0.110  Sum_probs=86.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      +-.++..+...|++++|+..|+.+++.+  |.++.++..++.++...|++++|+..|+++++.+| .+...+..++.++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            4567889999999999999999999988  89999999999999999999999999999999974 47889999999999


Q ss_pred             ccCCchHHHHHHHHhHHhhCCC
Q 038112           85 KNSMPDKALDVFQRMNEIFGCE  106 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~~~~~~  106 (625)
                      ..|++++|+..|+++.+..|..
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999987765543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.92  E-value=2.1e-07  Score=84.96  Aligned_cols=163  Identities=8%  Similarity=-0.010  Sum_probs=99.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCCcc----hHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----hhhHHH
Q 038112          176 LIDGFFKKGDYMRAKEIWERLVMETSVYPNVV----TYNVMINGLCKCGRFDECLEMWDRMKKNERE-KD----SFTYCS  246 (625)
Q Consensus       176 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~  246 (625)
                      .+..+...|++++|...++...+.....|+..    .+..+...+...|++++|+..+++....... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35566777888888888877766432222211    2234556666667777887777777763222 22    124667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHH
Q 038112          247 FIHGLCKAGNVEGAERVYREMVES-----GIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL------NVVSYN  314 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~  314 (625)
                      +...|...|++++|+..|+++++.     +..+ ...++..++.+|.+.|++++|++.+++.....+.      -..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            777777777777777777777631     1111 1235666777777777777777777666543211      255667


Q ss_pred             HHHHHHHhCCC-HHHHHHHHHHHHH
Q 038112          315 ILIRGLLENGK-VDEAISIWELLRE  338 (625)
Q Consensus       315 ~l~~~~~~~~~-~~~a~~~~~~~~~  338 (625)
                      .++.++...|+ +++|...+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            77777777773 5777776666543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.92  E-value=8.4e-08  Score=82.96  Aligned_cols=125  Identities=10%  Similarity=-0.075  Sum_probs=69.9

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 038112          211 VMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAG  290 (625)
Q Consensus       211 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  290 (625)
                      .+...+...|++++|+..|++..    .++...+..+...+...|++++|+..|++.++..+ .+...+..+..++...|
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcc
Confidence            34444555555555555555442    33445555555555555555555555555554432 24455555555555556


Q ss_pred             CHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 038112          291 KIKECFELWEVMGRKGCLNV----------------VSYNILIRGLLENGKVDEAISIWELLREKN  340 (625)
Q Consensus       291 ~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  340 (625)
                      ++++|++.|+.+....+.+.                .++..++.++...|++++|...|+......
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            66666665555555443332                666666666677777777777776666653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=4.8e-07  Score=82.56  Aligned_cols=161  Identities=12%  Similarity=0.024  Sum_probs=65.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCC-CCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 038112          405 MNGFIQASKLENAIFLFKEMSRKGC-SPTV----VSYNTLINGLCKVERFGEAYSFVKEMLEKGWK-PD----MITYSLL  474 (625)
Q Consensus       405 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l  474 (625)
                      +..+...|++++|..++++...... .|+.    ..+..+...+...+++++|+..++++.+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4445555666666666655554211 1110    01122333344444555555555555442111 11    1134444


Q ss_pred             HHHHhccCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 038112          475 INGLCQSKKIDMALKLCCQFLQ----K-GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVPN-LVTYNT  543 (625)
Q Consensus       475 ~~~~~~~~~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~  543 (625)
                      +..|...|++++|...++++++    . +..+ ...++..++.+|...|++++|..++++..+.    +..+. ..++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            4444455555555554444442    0 0001 1123444444444444444444444444321    10111 334444


Q ss_pred             HHHHHHccCC-hhHHHHHHHHHH
Q 038112          544 LMDGLFKTGD-CDKALEIWNHIL  565 (625)
Q Consensus       544 l~~~~~~~g~-~~~A~~~~~~~~  565 (625)
                      ++.++.+.|+ +++|.+.+++++
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHH
Confidence            4444444442 344444444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.90  E-value=2.5e-08  Score=87.45  Aligned_cols=196  Identities=9%  Similarity=-0.052  Sum_probs=119.3

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHhHHHHH-------HHHHHhcCChhhHHHHHHHHHhCCCCCC----------------
Q 038112          113 KRQFEKAKRFLNSLWEKGLKPDVYSYGTV-------INGLVKSGDLLGALAVFDEMFERGVETN----------------  169 (625)
Q Consensus       113 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------  169 (625)
                      .+++..|+..|.++...+ |.....|..+       ..++.+.++..+++..+......  .|+                
T Consensus        19 ~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCE
T ss_pred             CCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccc
Confidence            355555555555555554 4456666666       45555555666666666655542  111                


Q ss_pred             ------chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--Ch
Q 038112          170 ------VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK--DS  241 (625)
Q Consensus       170 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~  241 (625)
                            ......++..+...|++++|.++|+.+...+   |+......+...+.+.+++++|+..|+...... .|  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                  1123345566777888888888887776543   322255556667778888888888887554321 11  12


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD--AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNIL  316 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  316 (625)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++....|. ..++..|
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            3566677777778888888888877764332132  345566667777777777777777777776665 4444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.89  E-value=4.7e-08  Score=80.35  Aligned_cols=102  Identities=14%  Similarity=-0.034  Sum_probs=89.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++.++...|++++|+..|+.+++..  |.++.++..++.++...|++++|+..|+.+++.++ .+...+..++.++..
T Consensus        15 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           15 KSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            467788889999999999999999887  88899999999999999999999999999999874 478899999999999


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchh
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGIL  110 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~  110 (625)
                      .|++++|+..|+++....|..+.++
T Consensus        92 ~g~~~~A~~~~~~al~~~p~~~~~~  116 (164)
T 3sz7_A           92 MADYKGAKEAYEKGIEAEGNGGSDA  116 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCchHHH
Confidence            9999999999999988777766654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.88  E-value=2.3e-08  Score=82.46  Aligned_cols=127  Identities=10%  Similarity=-0.102  Sum_probs=93.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+..+|++++|+..|+.++...  |.++.++..++.++...|++++|.+.++.+++..+ .+...+..++.++..
T Consensus        17 ~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           17 KTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            456677778888888888888888766  77788888888888888888888888888888763 467778888888888


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHH--HHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSY--GTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .|++++|...|+++....|.                            +...+  ...+..+...|++++|+..+.....
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~----------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPH----------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88888888888877553332                            33333  2333335667788888888776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.86  E-value=9.6e-09  Score=82.48  Aligned_cols=96  Identities=14%  Similarity=-0.015  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  581 (625)
                      ...+..++..+...|++++|...|+++...+ +.+...|..++.++...|++++|+..|+++++  +.| +...+..+..
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~   97 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDIXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHH
Confidence            3344445555555555555555555555431 33455555555555555555555555555555  334 3345555555


Q ss_pred             HHhhcCChHHHHHHHHHHHH
Q 038112          582 GLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       582 ~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +|...|++++|.+.|++.++
T Consensus        98 ~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.85  E-value=9.4e-08  Score=78.76  Aligned_cols=128  Identities=12%  Similarity=0.060  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGL  548 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  548 (625)
                      ..+..+...+...|++++|...+++.++.. +.+...+..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            445666777788888888888888888753 3467788888888888999999999998888762 45678888888999


Q ss_pred             HccCChhHHHHHHHHHHHcCCCC-CHHHHHH--HHHHHhhcCChHHHHHHHHHHH
Q 038112          549 FKTGDCDKALEIWNHILEERLRP-DIISYNI--TLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      ...|++++|...++++++  ..| +...+..  .+..+...|++++|++.+++..
T Consensus        92 ~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            999999999999999888  455 4444433  3344777888999988888764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.84  E-value=1.5e-08  Score=84.62  Aligned_cols=122  Identities=6%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHccCCc--
Q 038112           13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQA-YGKNSMP--   89 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--   89 (625)
                      ..+|++++|+..|+.++...  |.++.++..++.++...|++++|...|+.+++..+ .+...+..++.+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence            45688889999999888877  88889999999999999999999999999998874 477788888888 7788887  


Q ss_pred             hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           90 DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      ++|...|+++....                            +.+...+..+...+...|++++|...|+++.+..
T Consensus        98 ~~A~~~~~~al~~~----------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALD----------------------------SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            88888888775433                            3345566667777777777777777777777763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.84  E-value=1.9e-08  Score=78.23  Aligned_cols=95  Identities=15%  Similarity=0.058  Sum_probs=78.3

Q ss_pred             HHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHH
Q 038112            5 AKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALS   78 (625)
Q Consensus         5 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~   78 (625)
                      ...|+.++..+|++++|+..|+.++..+  |.++.+|..++.++...|++++|++.++.+++.++...      ..++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            4678999999999999999999999887  88999999999999999999999999999988754221      235667


Q ss_pred             HHHHHHccCCchHHHHHHHHhHH
Q 038112           79 VIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        79 l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      ++.++...|++++|++.|++.+.
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            77778888888888888877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.84  E-value=2.8e-09  Score=99.22  Aligned_cols=151  Identities=11%  Similarity=-0.017  Sum_probs=110.2

Q ss_pred             CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--------------HHHHHHHHH
Q 038112           16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--------------EDVALSVIQ   81 (625)
Q Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~   81 (625)
                      +++++|+..|+.+....  |..+.++..++..+.+.|++++|...|++++...+...              ..++..++.
T Consensus       127 ~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            44556666666655544  66678888889999999999999999999998875432              467777888


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      +|.+.|++++|+..|+++....                            +.+..+|..+..++...|++++|+..|+++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~----------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD----------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC----------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8888888887777777775432                            345667777778888888888888888888


Q ss_pred             HhCCCCCCchhhHHHHHHHHhcCChhHH-HHHHHHHH
Q 038112          162 FERGVETNVVCYNILIDGFFKKGDYMRA-KEIWERLV  197 (625)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  197 (625)
                      ++..+ .+...+..+..++...|++++| ...|..+.
T Consensus       257 l~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          257 LQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77743 3566777778888888888777 34555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.84  E-value=3e-08  Score=77.27  Aligned_cols=95  Identities=5%  Similarity=-0.141  Sum_probs=87.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+..+|++++|+..|+.+++..  |.++.++..++.++.+.|++++|...++.+++.+| .+...+..++.++..
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            567888999999999999999999888  88999999999999999999999999999999974 578899999999999


Q ss_pred             cCCchHHHHHHHHhHHhh
Q 038112           86 NSMPDKALDVFQRMNEIF  103 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~  103 (625)
                      .|++++|...|+++....
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            999999999999987755

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.84  E-value=2.2e-08  Score=83.65  Aligned_cols=120  Identities=12%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             hccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCH--H
Q 038112          444 CKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG-LCSAGKV--E  520 (625)
Q Consensus       444 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~  520 (625)
                      ...|++++|...+++.++.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            34455555555555555431 2344455555555555555555555555555432 2244455555555 4455555  5


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          521 DALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       521 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +|...++++.+.+ +.+...+..++.++...|++++|...|+++++
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            5555555555531 23345555555555555555555555555555

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.84  E-value=6.1e-07  Score=81.86  Aligned_cols=168  Identities=10%  Similarity=-0.031  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CC--H
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTV-----VSYNTLINGLCKVERFGEAYSFVKEMLEKGWK---PD--M  468 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~  468 (625)
                      ..+...+..+...|++++|...+.+..+.......     ..+..+...+...|++++|+..+++..+....   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34455677788999999999999888775322111     12344556677889999999999998864211   11  3


Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC----CCC-C
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQ---K-GFTP--DVTMYNILIHGLCSAGKVEDALQLYSNMKKRN----CVP-N  537 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~  537 (625)
                      .+++.++..|...|++++|...++++.+   . +..+  ...++..++.+|...|++++|+.++++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            4788899999999999999999999873   2 1111  12588899999999999999999999987531    111 1


Q ss_pred             HHHHHHHHHHHHccCChhHH-HHHHHHHHH
Q 038112          538 LVTYNTLMDGLFKTGDCDKA-LEIWNHILE  566 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  566 (625)
                      ..++..++.+|...|++++| ...+++++.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            67889999999999999999 787888775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.82  E-value=6e-08  Score=75.40  Aligned_cols=106  Identities=11%  Similarity=0.098  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--------HHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD--------IIS  575 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~  575 (625)
                      ..+..++..+.+.|++++|+..|+++++.. |.+...|..++.+|...|++++|+..++++++  +.|+        ..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHH
Confidence            345556666667777777777777766642 33466666677777777777777777777665  2231        124


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038112          576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHIL  614 (625)
Q Consensus       576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  614 (625)
                      +..+..++...|++++|++.|++.++  ..||+.+...+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l  122 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence            55566666677777777777777664  33555544433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.80  E-value=4e-08  Score=88.82  Aligned_cols=197  Identities=12%  Similarity=0.025  Sum_probs=128.4

Q ss_pred             CCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHH
Q 038112          133 PDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVM  212 (625)
Q Consensus       133 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l  212 (625)
                      .+...+..+...+.+.|++++|+..|+++++..+ .+...|..++.++...|++++|+..++++.+..  +.+...+..+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   78 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   78 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            3456677778888888999999999888888743 367788888888888899999998888888763  4566778888


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 038112          213 INGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKI  292 (625)
Q Consensus       213 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  292 (625)
                      +.++...|++++|+..|++..+..+. +...+...+....+   ..++.. +..........+......+...  ..|++
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~  151 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAER  151 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence            88888889999998888887654321 11111111111111   111111 1222223334444444444332  25788


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Q 038112          293 KECFELWEVMGRKGCLNVVSYNILIRGLLEN-GKVDEAISIWELLREK  339 (625)
Q Consensus       293 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~  339 (625)
                      ++|++.++......|.+......+...+.+. +.++++.++|..+.+.
T Consensus       152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            8888888888777776666666666555555 5677788888776653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.79  E-value=1.5e-07  Score=74.12  Aligned_cols=94  Identities=15%  Similarity=0.104  Sum_probs=40.6

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK  550 (625)
Q Consensus       471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  550 (625)
                      +..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+. .+.+...+..++.++..
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHH
Confidence            3344444444444444444444444331 123344444444444444444444444444443 12234444444444444


Q ss_pred             cCChhHHHHHHHHHHH
Q 038112          551 TGDCDKALEIWNHILE  566 (625)
Q Consensus       551 ~g~~~~A~~~~~~~~~  566 (625)
                      .|++++|...++++++
T Consensus        97 ~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           97 MKDYTKAMDVYQKALD  112 (133)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            4444444444444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.78  E-value=2.6e-08  Score=79.54  Aligned_cols=111  Identities=9%  Similarity=-0.066  Sum_probs=86.2

Q ss_pred             HHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112           23 ALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEI  102 (625)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  102 (625)
                      ..|+.++..+  |.+...+..++..+.+.|++++|...|+.++..+| .+...+..++.++...|++++|+..|+++...
T Consensus         5 ~~l~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   81 (142)
T 2xcb_A            5 GTLAMLRGLS--EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM   81 (142)
T ss_dssp             ----CCTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHcCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            4667777766  77888999999999999999999999999999974 58899999999999999999999999998664


Q ss_pred             hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112          103 FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus       103 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                      .|.                            +...+..+..++...|++++|+..|+++.+.
T Consensus        82 ~p~----------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           82 DIN----------------------------EPRFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             CTT----------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCC----------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            443                            4445556666666666777776666666655

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.78  E-value=9.9e-07  Score=79.84  Aligned_cols=220  Identities=10%  Similarity=-0.025  Sum_probs=115.6

Q ss_pred             ccCChh-HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112           14 AEKNPH-TALALFDSATREPGYAHSPHLFHHILRRLIDPKL----------VVHVSRILELIEIQKCYCPEDVALSVIQA   82 (625)
Q Consensus        14 ~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   82 (625)
                      +.|.++ +|+..++.++..+  |.+..+|+....++...+.          ++++...+..++..+| .+..+|..-..+
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl  117 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL  117 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            344443 5666666666666  6666666655555443333          4566666666666653 356666665555


Q ss_pred             HHccCC--chHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-hhhHHHHHH
Q 038112           83 YGKNSM--PDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD-LLGALAVFD  159 (625)
Q Consensus        83 ~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~  159 (625)
                      +...++  +++++.+++++.+.+|.+                            ..+|+.-..++...|. ++++++.++
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprN----------------------------y~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERN----------------------------FHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCC----------------------------HHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            555553  455555555555544444                            4444444444444444 244555555


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhc------
Q 038112          160 EMFERGVETNVVCYNILIDGFFKK--------------GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKC------  219 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------  219 (625)
                      .+++.++. |...|+.....+...              +.++++++.+......  .|.|..+|+.+-..+.+.      
T Consensus       170 ~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          170 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcccc
Confidence            55544322 344444433333332              3355666666666554  244555555443333333      


Q ss_pred             -----CChhhHHHHHHHHHhCCCCCChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 038112          220 -----GRFDECLEMWDRMKKNEREKDSFTYCSFIH-----GLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       220 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~  270 (625)
                           +.++++++.++++.+..+  +. .|+.+..     .....+..+++...+.++.+.
T Consensus       247 ~~~~~~~l~~el~~~~elle~~p--d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELEP--EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCT--TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhCc--cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                 346677777777776543  32 2322211     112356677888888888775

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.77  E-value=1.7e-07  Score=73.00  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG  582 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~  582 (625)
                      ..+..++..+...|++++|+..|++..+.. +.+...+..++.++...|++++|+..++++++  +.| +...+..+..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence            445555566666666666666666666542 33456666666666666666666666666666  444 34556666666


Q ss_pred             HhhcCChHHHHHHHHHHHH
Q 038112          583 LCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       583 ~~~~g~~~~A~~~~~~~~~  601 (625)
                      +...|++++|.+.+++.++
T Consensus        82 ~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           82 QIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHH
Confidence            6666666666666666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.77  E-value=7.2e-09  Score=88.44  Aligned_cols=165  Identities=12%  Similarity=-0.064  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC----------
Q 038112            3 ISAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP----------   72 (625)
Q Consensus         3 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------   72 (625)
                      ..|..........|+++.|...++......  +.....+..++..+...|++++|...|.+++...+...          
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   82 (198)
T 2fbn_A            5 HHHHHHSSGRENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK   82 (198)
T ss_dssp             -----------------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred             ccccchhhhhhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence            345666666777788888888777654433  45567788888889999999999999999998754322          


Q ss_pred             -----HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 038112           73 -----EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVK  147 (625)
Q Consensus        73 -----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (625)
                           ..++..++.++...|++++|+..++++....                            +.+...+..+..++..
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------p~~~~~~~~lg~~~~~  134 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID----------------------------KNNVKALYKLGVANMY  134 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------cccHHHHHHHHHHHHH
Confidence                 2667777777777777777777777764422                            3456667777777778


Q ss_pred             cCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH-HHHHHHHh
Q 038112          148 SGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK-EIWERLVM  198 (625)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~  198 (625)
                      .|++++|+..|++..+..+ .+...+..+..++...++..++. ..+..+..
T Consensus       135 ~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          135 FGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             cccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888888888777632 35666777777777777666666 44444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.76  E-value=1.4e-07  Score=87.68  Aligned_cols=130  Identities=9%  Similarity=-0.060  Sum_probs=98.1

Q ss_pred             HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 038112          468 MITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD--------------VTMYNILIHGLCSAGKVEDALQLYSNMKKRN  533 (625)
Q Consensus       468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  533 (625)
                      ...+..+...+.+.|++++|...|++.++......              ...+..++.+|...|++++|+..++++++..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566666677777777777777777766432211              4778888888888999999999998888863


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHH-HHHHHHHH
Q 038112          534 CVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDA-FEFLNDAL  600 (625)
Q Consensus       534 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  600 (625)
                       +.+...+..++.+|...|++++|+..|+++++  +.| +...+..+..++.+.|+.++| ...+++|.
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             45688888888899999999999999999888  566 457777888888888888887 45666654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.75  E-value=2.2e-07  Score=72.84  Aligned_cols=114  Identities=15%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGL  583 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~  583 (625)
                      .+..++..+...|++++|...++++... .+.+...+..++.++...|++++|+..++++++  ..| +...+..++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHHHH
Confidence            3444444444445555555555444443 122344444445555555555555555555444  223 234444444445


Q ss_pred             hhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038112          584 CSCSRMSDAFEFLNDALCRGILPTTITWHILVRAVMNNG  622 (625)
Q Consensus       584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  622 (625)
                      ...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence            55555555555555544321 112334444444444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=3.3e-07  Score=71.04  Aligned_cols=95  Identities=21%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKG  582 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~  582 (625)
                      ..+..++..+...|++++|..+++++.+. .+.+..++..++.++...|++++|..+++++.+  ..| +...+..++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~   86 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence            34444444455555555555555555443 122344444555555555555555555555544  222 33444444555


Q ss_pred             HhhcCChHHHHHHHHHHHH
Q 038112          583 LCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       583 ~~~~g~~~~A~~~~~~~~~  601 (625)
                      +...|++++|.+.++++.+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHH
Confidence            5555555555555555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.74  E-value=2.3e-07  Score=72.95  Aligned_cols=113  Identities=10%  Similarity=0.027  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 038112          208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFC  287 (625)
Q Consensus       208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  287 (625)
                      .+..++..+...|++++|...|++.....+ .+...+..+...+...|++++|+..++++.+... .+...+..+..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~   95 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence            444455555555555555555555544332 2344455555555555555555555555554422 14445555555555


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 038112          288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE  322 (625)
Q Consensus       288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (625)
                      ..|++++|.+.|+......+.+...+..+..++..
T Consensus        96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            55555555555555555544444455444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.73  E-value=4.8e-07  Score=70.10  Aligned_cols=97  Identities=18%  Similarity=0.235  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          242 FTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      ..+..++..+...|++++|...++++.+... .+..++..++..+...|++++|..+++.+....+.+..++..++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            3444455555555555555555555554321 234455555555555555555555555555555555555555555555


Q ss_pred             hCCCHHHHHHHHHHHHHc
Q 038112          322 ENGKVDEAISIWELLREK  339 (625)
Q Consensus       322 ~~~~~~~a~~~~~~~~~~  339 (625)
                      ..|++++|...++++...
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            555555555555555554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.73  E-value=1.3e-07  Score=74.05  Aligned_cols=102  Identities=8%  Similarity=-0.093  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCH---HHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC---HHHHH
Q 038112            4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSP---HLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP---EDVAL   77 (625)
Q Consensus         4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~   77 (625)
                      ..-.++..+..+|++++|+..|+.+++..  |.++   .++..++.++...|++++|...|+.+++..|. +   ...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~   80 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLL   80 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHH
Confidence            34567889999999999999999998865  5555   78889999999999999999999999998744 4   67788


Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAG  108 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  108 (625)
                      .++.++...|++++|...|+++...+|..+.
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence            9999999999999999999999776665443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.72  E-value=1.4e-07  Score=80.80  Aligned_cols=156  Identities=11%  Similarity=-0.052  Sum_probs=93.1

Q ss_pred             ccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHcCCCH
Q 038112          445 KVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQ----KGFT-PDVTMYNILIHGLCSAGKV  519 (625)
Q Consensus       445 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~  519 (625)
                      ..|++++|.+.++.+... .......+..+...+...|++++|...+++.++    .+.. ....++..++.++...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            356666666644333321 112345566666666667777777776666654    1111 1244566777777778888


Q ss_pred             HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHhhcCC
Q 038112          520 EDALQLYSNMKKR----NCVP--NLVTYNTLMDGLFKTGDCDKALEIWNHILEER--L-RPD--IISYNITLKGLCSCSR  588 (625)
Q Consensus       520 ~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~  588 (625)
                      ++|...+++..+.    +..+  ....+..++.++...|++++|...++++++..  . .+.  ..++..+..++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8887777776653    1111  13456777777888888888888887776520  1 111  1235666777778888


Q ss_pred             hHHHHHHHHHHHH
Q 038112          589 MSDAFEFLNDALC  601 (625)
Q Consensus       589 ~~~A~~~~~~~~~  601 (625)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.72  E-value=1.4e-07  Score=71.51  Aligned_cols=98  Identities=11%  Similarity=-0.092  Sum_probs=85.3

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC--PEDVALSVIQAY   83 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~   83 (625)
                      ..++.++..+|++++|+..|+.+++..  |.++.++..++.++...|++++|.+.++++++.. +.  +..++..++.++
T Consensus        10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A           10 YLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence            567888999999999999999998877  7888999999999999999999999999999886 44  678888999999


Q ss_pred             Hcc-CCchHHHHHHHHhHHhhCCC
Q 038112           84 GKN-SMPDKALDVFQRMNEIFGCE  106 (625)
Q Consensus        84 ~~~-~~~~~A~~~~~~~~~~~~~~  106 (625)
                      ... |++++|.+.++++....|..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHhCCHHHHHHHHHHHhhcccCC
Confidence            999 99999999999987766544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.69  E-value=9.4e-06  Score=73.50  Aligned_cols=183  Identities=8%  Similarity=-0.057  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC-hhhHHHH
Q 038112          152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKG--DYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR-FDECLEM  228 (625)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~  228 (625)
                      ++++..++.+....++ +..+|+.-..++...|  .+++++..++.+.+..  +.|..+|+.-.-++...|. ++++++.
T Consensus        91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            4445555555444322 4444444444444444  2455555555555442  3444444444444444444 3455555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKA--------------GNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA-----  289 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  289 (625)
                      ++++.+..+ .|...|+.....+...              +.++++++.+...+...+. |...|+.+-..+.+.     
T Consensus       168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence            555554432 2444444333333222              2244555555555544322 444444333333322     


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc
Q 038112          290 ------GKIKECFELWEVMGRKGCLNVVSYNILIRGLL---ENGKVDEAISIWELLREK  339 (625)
Q Consensus       290 ------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~  339 (625)
                            +.++++++.++++....|.+..++..++....   ..+..+++...+.++.+.
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                  23455666666666655555444333322111   234455555555555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.69  E-value=4.8e-07  Score=77.38  Aligned_cols=137  Identities=12%  Similarity=-0.068  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC--
Q 038112          276 AVTYNAMIDGFCRAGKIKECFELWEVMGR------KGCLNVVSYNILIRGLLENGKVDEAISIWELLREK----NCNA--  343 (625)
Q Consensus       276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--  343 (625)
                      ..++..+...+...|++++|...+++...      ..+....++..+...+...|++++|...+++....    +..+  
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            34444444455555555555555544433      11113445555666666666666666666555443    1011  


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112          344 DSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCK-LNAYTCNSLMNGFIQASKLENAIFLFK  422 (625)
Q Consensus       344 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~  422 (625)
                      ....+..+...+...|++++|...+++...              .....+.+ ....++..+...+...|++++|...++
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  171 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLV--------------YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--------------HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            122344555566666666666666664321              01111111 112334566666777777777777776


Q ss_pred             HHHh
Q 038112          423 EMSR  426 (625)
Q Consensus       423 ~~~~  426 (625)
                      +..+
T Consensus       172 ~al~  175 (203)
T 3gw4_A          172 RARD  175 (203)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.69  E-value=5.1e-07  Score=70.68  Aligned_cols=96  Identities=17%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 038112          243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLE  322 (625)
Q Consensus       243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  322 (625)
                      .+..++..+...|++++|...+++.....+ .+...+..++.++...|++++|.+.++......+.+...+..++.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            334444444444555555555554444321 1344444455555555555555555555554444445555555555555


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 038112          323 NGKVDEAISIWELLREK  339 (625)
Q Consensus       323 ~~~~~~a~~~~~~~~~~  339 (625)
                      .|++++|...+++....
T Consensus        93 ~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhc
Confidence            55555555555555444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.66  E-value=1.5e-07  Score=72.13  Aligned_cols=97  Identities=11%  Similarity=-0.152  Sum_probs=80.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++..+...|++++|+..|+.++...  |.++..+..++.++...|++++|...++.+++..+ .+...+..++.++..
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            456788888999999999999988776  77888888899989899999999999999988864 477888888888888


Q ss_pred             cCCchHHHHHHHHhHHhhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGC  105 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~  105 (625)
                      .|++++|...|+++....|.
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT
T ss_pred             HhhHHHHHHHHHHHHHcCCC
Confidence            88888888888887654443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.64  E-value=4.5e-08  Score=83.46  Aligned_cols=122  Identities=8%  Similarity=-0.114  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038112          208 TYNVMINGLCKCGRFDECLEMWDRMKKNEREKD---------------SFTYCSFIHGLCKAGNVEGAERVYREMVESGI  272 (625)
Q Consensus       208 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  272 (625)
                      .+..+...+...|++++|+..|++.....+...               ...+..+..++...|++++|+..++..++..+
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            344445555555555555555555554322110               24566667777777777777777777776532


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 038112          273 FVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAI  330 (625)
Q Consensus       273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  330 (625)
                       .+...+..+..+|...|++++|++.|+......|.+..++..+..++...++.+++.
T Consensus       120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             256677777777777777777777777777777777777777777666665555554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.64  E-value=3.8e-08  Score=75.40  Aligned_cols=95  Identities=5%  Similarity=-0.083  Sum_probs=78.8

Q ss_pred             ccCChhHHHHHHHhhccCC-CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHH
Q 038112           14 AEKNPHTALALFDSATREP-GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKA   92 (625)
Q Consensus        14 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   92 (625)
                      .+|++++|+..|+.+++.. ..|.++.++..++.++...|++++|...|+++++..| .+..++..++.++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence            4689999999999999861 0267789999999999999999999999999999974 5788999999999999999999


Q ss_pred             HHHHHHhHHhhCCCcch
Q 038112           93 LDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        93 ~~~~~~~~~~~~~~~~~  109 (625)
                      +..|+++....|..+.+
T Consensus        81 ~~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           81 VELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHhCCCcHHH
Confidence            99999998876665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.63  E-value=1.3e-06  Score=66.80  Aligned_cols=96  Identities=27%  Similarity=0.230  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  581 (625)
                      ...+..++..+...|++++|...+++.... .+.+...+..++.++...|++++|...++++++  ..| +...+..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~   80 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--LKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH--hCcccHHHHHHHHH
Confidence            445566666677777777777777777664 234566667777777777777777777777776  344 4566666677


Q ss_pred             HHhhcCChHHHHHHHHHHHH
Q 038112          582 GLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       582 ~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++...|++++|.+.+++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777777764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.63  E-value=2.8e-07  Score=72.96  Aligned_cols=96  Identities=11%  Similarity=-0.069  Sum_probs=80.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ..++.++...|++++|+..|+.++...  |.++.++..++.++...|++++|...++.+++.++ .+...+..++.++..
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~   89 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHH
Confidence            466788888889999999998888877  77888888888888888999999999988888864 477888888888888


Q ss_pred             cCCchHHHHHHHHhHHhhC
Q 038112           86 NSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~  104 (625)
                      .|++++|+..|+++....|
T Consensus        90 ~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           90 MESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHCh
Confidence            8888888888888766444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.63  E-value=1.8e-07  Score=73.64  Aligned_cols=101  Identities=10%  Similarity=-0.081  Sum_probs=87.9

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCC-------CH-----HHHHHHHHHhhCCCChhHHHHHHHHHHHh------
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAH-------SP-----HLFHHILRRLIDPKLVVHVSRILELIEIQ------   67 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------   67 (625)
                      -.++..+...|++++|+..|+.+++..  |.       +.     .+|..++.++.+.|++++|+..++.++..      
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            457788999999999999999999877  44       33     39999999999999999999999999998      


Q ss_pred             -cCCCCHHHH----HHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           68 -KCYCPEDVA----LSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        68 -~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                       +| .+...|    +..+.++...|++++|+..|++..+..|....+
T Consensus        93 ~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           93 LNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             TTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence             74 477788    999999999999999999999998876665544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.61  E-value=7.3e-07  Score=73.14  Aligned_cols=103  Identities=15%  Similarity=0.045  Sum_probs=78.2

Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD  546 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  546 (625)
                      +...+..+...+...|++++|...|++.++.. +.+...+..++.+|...|++++|+..++++++.. +.+...|..++.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34567777778888888888888888887753 3367778888888888888888888888888752 445777888888


Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          547 GLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       547 ~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      ++...|++++|+..|+++++  +.|+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~--~~p~~  112 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIE--AEGNG  112 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred             HHHHccCHHHHHHHHHHHHH--hCCCc
Confidence            88888888888888888887  45533

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.60  E-value=2.6e-06  Score=67.28  Aligned_cols=96  Identities=18%  Similarity=0.071  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITL  580 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~  580 (625)
                      +...+..++..+...|++++|...|++..... +.+...+..++.++...|++++|+..++++++  +.| +...+..+.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~   84 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG   84 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCchhHHHHHHHH
Confidence            34444455555555555555555555554431 22344555555555555555555555555555  233 334444555


Q ss_pred             HHHhhcCChHHHHHHHHHHH
Q 038112          581 KGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       581 ~~~~~~g~~~~A~~~~~~~~  600 (625)
                      .+|...|++++|...+++++
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHH
Confidence            55555555555555555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.60  E-value=5.3e-07  Score=70.59  Aligned_cols=107  Identities=18%  Similarity=0.197  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-C-------HHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-D-------IIS  575 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-------~~~  575 (625)
                      ..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++  ..| +       ..+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh--hccccchhHHHHHHH
Confidence            344555555666666666666666665542 33455556666666666666666666666655  222 1       445


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038112          576 YNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILV  615 (625)
Q Consensus       576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  615 (625)
                      +..++.++.+.|++++|.+.++++.+.  .|+...+..+.
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  119 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            555556666666666666666666543  24444444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.59  E-value=7.6e-07  Score=86.72  Aligned_cols=209  Identities=8%  Similarity=-0.037  Sum_probs=107.0

Q ss_pred             CCCCHHHH--HHHHHccCChhHHHHHHHhhccCCCCCCCH---------------HHHHHHHHHhhCCCChhHHHHHHHH
Q 038112            1 MVISAKRL--LNLLKAEKNPHTALALFDSATREPGYAHSP---------------HLFHHILRRLIDPKLVVHVSRILEL   63 (625)
Q Consensus         1 ~~~~~~~l--~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~   63 (625)
                      ||.-...|  ++-+..+|++++|+..|..+++......+.               .++..++..|...|++++|.+.+..
T Consensus         1 ~s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~   80 (434)
T 4b4t_Q            1 MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH   80 (434)
T ss_dssp             CCSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34434444  466677888888888888877765322221               2345566666666666666666666


Q ss_pred             HHHhcCCCCH-----HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCC-CCCHhH
Q 038112           64 IEIQKCYCPE-----DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGL-KPDVYS  137 (625)
Q Consensus        64 ~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  137 (625)
                      +.+.....+.     .+...++..+...|+++.|..+++......                       ...+. ..-..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~~~  137 (434)
T 4b4t_Q           81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-----------------------KREKRVFLKHSL  137 (434)
T ss_dssp             THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-----------------------HHSSCCSSHHHH
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-----------------------HHhCccHHHHHH
Confidence            5543211111     122223333344445555555544432210                       11111 112345


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhC--CCC---CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-----cc
Q 038112          138 YGTVINGLVKSGDLLGALAVFDEMFER--GVE---TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-----VV  207 (625)
Q Consensus       138 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~  207 (625)
                      +..+...+...|++++|..+++++...  +..   ....++..++..|...|++++|...+++........++     ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            666777777777887777777776543  111   11235566666677777777777766665432100111     12


Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHH
Q 038112          208 TYNVMINGLCKCGRFDECLEMWDRM  232 (625)
Q Consensus       208 ~~~~l~~~~~~~g~~~~a~~~~~~~  232 (625)
                      .+..++..+...|++++|...|.+.
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            2334444455555555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.58  E-value=5e-07  Score=69.39  Aligned_cols=93  Identities=13%  Similarity=0.006  Sum_probs=61.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 038112          506 YNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLC  584 (625)
Q Consensus       506 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~  584 (625)
                      +..++..+...|++++|+..|+++.+.. +.+...|..++.++...|++++|+..|+++++  +.| +...+..+..+|.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            3445556666777777777777776642 33566666777777777777777777777776  555 4456666666777


Q ss_pred             hcCChHHHHHHHHHHHH
Q 038112          585 SCSRMSDAFEFLNDALC  601 (625)
Q Consensus       585 ~~g~~~~A~~~~~~~~~  601 (625)
                      +.|++++|+..+++.++
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           97 NEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            77777777777777664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.58  E-value=1e-06  Score=66.69  Aligned_cols=99  Identities=11%  Similarity=-0.039  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHH
Q 038112          241 SFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL--NVVSYNILIR  318 (625)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~  318 (625)
                      ...+..+...+...|++++|...++++++... .+...+..+..++...|++++|.+.++......+.  +..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            33444455555555555555555555555432 24455555566666666666666666666665555  5666666666


Q ss_pred             HHHhC-CCHHHHHHHHHHHHHcC
Q 038112          319 GLLEN-GKVDEAISIWELLREKN  340 (625)
Q Consensus       319 ~~~~~-~~~~~a~~~~~~~~~~~  340 (625)
                      ++... |++++|.+.++......
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcc
Confidence            66666 66666666666666553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.55  E-value=5.7e-07  Score=70.39  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=81.9

Q ss_pred             hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 038112          469 ITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC--VPN----LVTYN  542 (625)
Q Consensus       469 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~  542 (625)
                      ..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|..+++++.....  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456667777778888888888888877753 44677778888888888888888888888876421  111    66788


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKG  582 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  582 (625)
                      .++.++...|++++|...|+++++  ..|+......+..+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence            888888888899999998888888  55666655555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=3.1e-06  Score=67.84  Aligned_cols=96  Identities=19%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISY  576 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~  576 (625)
                      +...+..++..+...|++++|...|++..+.  .|+    ...+..++.++...|++++|+..++++++  ..| +...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE--KDGGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTSCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCccCHHHH
Confidence            4555666666666666666666666666653  233    45566666666666666666666666666  344 44556


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          577 NITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       577 ~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ..+..+|...|++++|.+.+++.++
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666666666664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=3.9e-06  Score=67.29  Aligned_cols=110  Identities=14%  Similarity=-0.011  Sum_probs=83.3

Q ss_pred             CHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038112          467 DMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYN  542 (625)
Q Consensus       467 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  542 (625)
                      +...+..+...+...|++++|...|++.++.  .|+    ...+..++.+|...|++++|...+++..+. .+.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHH
Confidence            4556677777788888888888888888775  344    567778888888889999999888888875 244677888


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLK  581 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~  581 (625)
                      .++.++...|++++|...|+++++  +.|+. ..+..+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~  141 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence            888888899999999999998888  56643 44443333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.52  E-value=2.8e-07  Score=75.51  Aligned_cols=101  Identities=11%  Similarity=0.011  Sum_probs=86.3

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccC--------CC--------CCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATRE--------PG--------YAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKC   69 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~--------~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~   69 (625)
                      ...+..+..+|++++|+..|..++..        ..        .|....++..++.++.+.|++++|+..++.++..+ 
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-   93 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-   93 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence            56788999999999999999999876        10        14556888999999999999999999999999997 


Q ss_pred             CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCc
Q 038112           70 YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEA  107 (625)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  107 (625)
                      |.+...+..++.+|...|++++|...|+++....|..+
T Consensus        94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            45888999999999999999999999999877655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.51  E-value=7.5e-08  Score=93.73  Aligned_cols=150  Identities=11%  Similarity=-0.016  Sum_probs=108.0

Q ss_pred             CChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC--------------HHHHHHHHH
Q 038112           16 KNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP--------------EDVALSVIQ   81 (625)
Q Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~   81 (625)
                      +++++|+..|+.+....  |.....+..++..+.+.|++++|...|+++++..+...              ..++..++.
T Consensus       248 ~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34556666666555444  55677888899999999999999999999998865432              467777777


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      +|.+.|++++|+..|++++..                           + +.+..+|..+..++...|++++|+..|+++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~---------------------------~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a  377 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGL---------------------------D-SANEKGLYRRGEAQLLMNEFESAKGDFEKV  377 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---------------------------S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhc---------------------------C-CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777777777777777776442                           2 346777888888888888888888888888


Q ss_pred             HhCCCCCCchhhHHHHHHHHhcCChhHHHH-HHHHH
Q 038112          162 FERGVETNVVCYNILIDGFFKKGDYMRAKE-IWERL  196 (625)
Q Consensus       162 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~  196 (625)
                      ++..+ .+...+..+..++...++++++.. .+..+
T Consensus       378 l~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          378 LEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88743 366778888888888888877664 44444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.46  E-value=6.5e-06  Score=64.84  Aligned_cols=107  Identities=14%  Similarity=0.052  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN-------------LVTYNTLMDGLFKTGDCDKALEIWNHILEERL--  569 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--  569 (625)
                      .+...+..+...|++++|+..|++.++.  .|+             ...|..++.++.+.|++++|+..++++++  +  
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n   88 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFN   88 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhh
Confidence            3444555566666666666666666653  222             22777777777788888888887777777  5  


Q ss_pred             -----CCCH-HHH----HHHHHHHhhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 038112          570 -----RPDI-ISY----NITLKGLCSCSRMSDAFEFLNDALC-----RGILPTTITWHILV  615 (625)
Q Consensus       570 -----~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~  615 (625)
                           .|+. ..|    .....++...|++++|+..|++.++     .|+.+........+
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                 7754 566    7777788888888888888887764     35555554444333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.46  E-value=2e-06  Score=70.33  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=60.1

Q ss_pred             HhhHHHHHHHHhccCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 038112          468 MITYSLLINGLCQSKKIDMALKLCCQFLQK--------GF---------TPDVTMYNILIHGLCSAGKVEDALQLYSNMK  530 (625)
Q Consensus       468 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  530 (625)
                      ...+...+..+.+.|++++|...|.+.+..        ..         +.+...|..++.+|...|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345566666677777777777777766653        00         1123455556666666666666666666666


Q ss_pred             hCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 038112          531 KRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD  572 (625)
Q Consensus       531 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~  572 (625)
                      +.+ +.+...|..++.++...|++++|+..|+++++  +.|+
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~  129 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPA  129 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGG
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCC
Confidence            542 33455666666666666666666666666666  4554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.45  E-value=1.5e-07  Score=91.93  Aligned_cols=94  Identities=6%  Similarity=-0.143  Sum_probs=82.0

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      ++..+..+|++++|+..|+.+++..  |.++.++..++.++.+.|++++|.+.++++++.++ .+...+..++.+|...|
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence            4456678899999999999999887  88899999999999999999999999999999864 57888999999999999


Q ss_pred             CchHHHHHHHHhHHhhC
Q 038112           88 MPDKALDVFQRMNEIFG  104 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~  104 (625)
                      ++++|...|+++.+..|
T Consensus        89 ~~~eA~~~~~~al~~~p  105 (477)
T 1wao_1           89 KFRAALRDYETVVKVKP  105 (477)
T ss_dssp             CHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCC
Confidence            99999999998866444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=3.5e-05  Score=74.88  Aligned_cols=195  Identities=9%  Similarity=-0.034  Sum_probs=123.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCCc---------------chHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC
Q 038112          177 IDGFFKKGDYMRAKEIWERLVMETSVYPNV---------------VTYNVMINGLCKCGRFDECLEMWDRMKKNERE-KD  240 (625)
Q Consensus       177 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~  240 (625)
                      ++.+.+.|++++|++.|..+.+......+.               .++..++..|...|++++|.+.+.++...-.. ++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            344455555555555555555443111111               12556777788888888888877776542111 11


Q ss_pred             h----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 038112          241 S----FTYCSFIHGLCKAGNVEGAERVYREMVES----GIFV-DAVTYNAMIDGFCRAGKIKECFELWEVMGRKG-----  306 (625)
Q Consensus       241 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----  306 (625)
                      .    .+.+.+...+...|+++.+..++......    +..+ -..++..++..|...|++++|..+++.+....     
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    12233334445667888888888776542    2222 24567788888999999999999888775431     


Q ss_pred             -CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-CC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112          307 -CLNVVSYNILIRGLLENGKVDEAISIWELLREKN--C-NA-D--STTHGVLINGLCKNGYLNKAIQILNEV  371 (625)
Q Consensus       307 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~  371 (625)
                       +....++..++..|...|++++|..++++.....  . .| .  ...+..+...+...++++.|...+.+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence             1256788888999999999999999988876531  1 11 1  233455566777889999998887753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.42  E-value=1.1e-05  Score=62.77  Aligned_cols=26  Identities=12%  Similarity=-0.009  Sum_probs=10.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038112          280 NAMIDGFCRAGKIKECFELWEVMGRK  305 (625)
Q Consensus       280 ~~l~~~~~~~~~~~~a~~~~~~~~~~  305 (625)
                      ..+..++...|++++|...|+.+...
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33333333444444444444433333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.38  E-value=7.9e-07  Score=82.64  Aligned_cols=100  Identities=15%  Similarity=0.008  Sum_probs=77.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCH-----------------HHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSP-----------------HLFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      ..++..+..+|++++|+..|+.++...  |.+.                 .++..++.++.+.|++++|...++.+++..
T Consensus       183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          183 KMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            456778889999999999999988766  4444                 377888888888999999999999998886


Q ss_pred             CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112           69 CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG  108 (625)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  108 (625)
                       |.+...+..++.+|...|++++|+..|+++....|..+.
T Consensus       261 -p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~  299 (338)
T 2if4_A          261 -EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA  299 (338)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence             347788888888888889988888888888665554433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.37  E-value=6.8e-07  Score=68.32  Aligned_cols=85  Identities=14%  Similarity=0.045  Sum_probs=46.3

Q ss_pred             cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112          481 SKKIDMALKLCCQFLQKG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  558 (625)
                      .|++++|+..|++.++.+  -+.+...+..++.+|...|++++|+..|+++.+.. +.+..++..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            455566666666666542  12234455556666666666666666666666542 334555566666666666666666


Q ss_pred             HHHHHHHH
Q 038112          559 EIWNHILE  566 (625)
Q Consensus       559 ~~~~~~~~  566 (625)
                      ..++++++
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666655

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.36  E-value=2.9e-06  Score=69.26  Aligned_cols=132  Identities=16%  Similarity=0.027  Sum_probs=86.6

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 038112          470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFT-PD----VTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLV  539 (625)
Q Consensus       470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~  539 (625)
                      ++..+...+...|++++|...+++..+.... ++    ..++..++..+...|++++|...+++..+.    +.++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455556666666666666666665542100 11    236667777788888888888888776653    1111 144


Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEE----RLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++..++.++...|++++|...++++++.    +..+ ....+..+...+...|++++|.+.+++.++
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            6777888888888888888888887752    1111 124566777788888889888888888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.35  E-value=4.8e-06  Score=80.99  Aligned_cols=128  Identities=7%  Similarity=-0.068  Sum_probs=83.0

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 038112          470 TYSLLINGLCQSKKIDMALKLCCQFLQKGFTP--------------DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCV  535 (625)
Q Consensus       470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  535 (625)
                      .+..+...+.+.|++++|...|+++++.....              ....|..++.+|.+.|++++|+..++++++.. +
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  348 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S  348 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence            34444455555555555555555555421111              14677777888888888888888888887752 4


Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHH-HHHHHHH
Q 038112          536 PNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAF-EFLNDAL  600 (625)
Q Consensus       536 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~  600 (625)
                      .+...+..++.+|...|++++|+..|+++++  +.| +...+..+..++.+.|+.+++. ..+++|.
T Consensus       349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888888888888888888888887  666 3456677777777777777665 3445443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.33  E-value=2.7e-07  Score=69.82  Aligned_cols=92  Identities=11%  Similarity=0.002  Sum_probs=78.1

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALSV   79 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l   79 (625)
                      ..++.++..+|++++|+..|+.+++..  |.++.++..++.++...|++++|.+.++.+++..+. +      ...+..+
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            8 KEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH
Confidence            567888999999999999999999887  888999999999999999999999999999988643 4      6677778


Q ss_pred             HHHHHccCCchHHHHHHHHhH
Q 038112           80 IQAYGKNSMPDKALDVFQRMN  100 (625)
Q Consensus        80 ~~~~~~~~~~~~A~~~~~~~~  100 (625)
                      +.++...|+++.|...+++++
T Consensus        85 ~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           85 ELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHhHhhhHhHHHHhH
Confidence            888888888888877776654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.32  E-value=2e-05  Score=61.98  Aligned_cols=110  Identities=15%  Similarity=-0.041  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHH
Q 038112          483 KIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKAL  558 (625)
Q Consensus       483 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  558 (625)
                      ++++|.+.|++..+.| .|+..    +...|...+.+++|.++|++..+.|   ++..+..|+..|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4455555555555554 22222    4455555555555666666665543   45555555555555    55666666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhh----cCChHHHHHHHHHHHHCC
Q 038112          559 EIWNHILEERLRPDIISYNITLKGLCS----CSRMSDAFEFLNDALCRG  603 (625)
Q Consensus       559 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  603 (625)
                      .+|+++.+.|   ++..+..+...|..    .+++++|.+++++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666665532   44555555555555    556666666666665544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.32  E-value=5.3e-06  Score=77.92  Aligned_cols=90  Identities=13%  Similarity=-0.006  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITL  580 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~  580 (625)
                      +...|..++.+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++  +.| +...+..+.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~  348 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            46678888899999999999999999999863 44688888999999999999999999999998  666 456667777


Q ss_pred             HHHhhcCChHHHHH
Q 038112          581 KGLCSCSRMSDAFE  594 (625)
Q Consensus       581 ~~~~~~g~~~~A~~  594 (625)
                      .++...++.+++.+
T Consensus       349 ~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          349 KVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777776666653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.31  E-value=7.1e-07  Score=70.10  Aligned_cols=89  Identities=9%  Similarity=-0.063  Sum_probs=71.7

Q ss_pred             HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCCh----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 038112           13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLV----------VHVSRILELIEIQKCYCPEDVALSVIQA   82 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~   82 (625)
                      .+.+.+++|+..|+.+++.+  |.++.+|..++.++...+++          ++|+..|+++++.+| .....+..++.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHH
Confidence            34567899999999999988  99999999999999988775          599999999999985 488899999999


Q ss_pred             HHccC-----------CchHHHHHHHHhHHhhC
Q 038112           83 YGKNS-----------MPDKALDVFQRMNEIFG  104 (625)
Q Consensus        83 ~~~~~-----------~~~~A~~~~~~~~~~~~  104 (625)
                      |...|           ++++|+..|+++.+..|
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            98775           45555555555544433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.31  E-value=1.3e-05  Score=79.71  Aligned_cols=169  Identities=10%  Similarity=-0.049  Sum_probs=85.9

Q ss_pred             hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC-
Q 038112           19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKL----------VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS-   87 (625)
Q Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-   87 (625)
                      ++|+..++.++..+  |.+..+|.....++...|+          ++++.+.++.+++.+| .+..+|..-..++.+.+ 
T Consensus        46 eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           46 ESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccc
Confidence            45566666665555  5555666555555555444          5566666666665543 35555555555555555 


Q ss_pred             -CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-ChhhHHHHHHHHHhCC
Q 038112           88 -MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSG-DLLGALAVFDEMFERG  165 (625)
Q Consensus        88 -~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~  165 (625)
                       +++++++.++++.+..+.+                            ..+|+.-..++.+.| .++++++.++++++..
T Consensus       123 ~~~~~el~~~~k~l~~d~~N----------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          123 PNWARELELCARFLEADERN----------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             ccHHHHHHHHHHHHhhcccc----------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence             3355555555555544444                            444444444444444 4444555555444443


Q ss_pred             CCCCchhhHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCC
Q 038112          166 VETNVVCYNILIDGFFKK--------------GDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGR  221 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  221 (625)
                      +. +...|+.....+...              +.++++++.+..+....  |.+..+|..+...+.+.+.
T Consensus       175 p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          175 FS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCC
T ss_pred             CC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCC
Confidence            22 344444444333331              33455555555555542  3445555555555554444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.29  E-value=2.4e-06  Score=79.43  Aligned_cols=147  Identities=12%  Similarity=-0.060  Sum_probs=82.4

Q ss_pred             hhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038112          433 VVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHG  512 (625)
Q Consensus       433 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  512 (625)
                      ...+..+...+.+.|++++|...|++.+..  .|+...       +...++..++...+.          ...|..++.+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            344556666677777777777777777663  333221       222333333332211          1377888999


Q ss_pred             HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH-HhhcCChH
Q 038112          513 LCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKG-LCSCSRMS  590 (625)
Q Consensus       513 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~  590 (625)
                      |.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++  +.|+. ..+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999863 45788999999999999999999999999988  67744 555555554 33456778


Q ss_pred             HHHHHHHHHHH
Q 038112          591 DAFEFLNDALC  601 (625)
Q Consensus       591 ~A~~~~~~~~~  601 (625)
                      ++.+++++|..
T Consensus       317 ~a~~~~~~~l~  327 (338)
T 2if4_A          317 KQKEMYKGIFK  327 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhC
Confidence            88899999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.27  E-value=3.1e-06  Score=82.64  Aligned_cols=120  Identities=14%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             cchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCCh
Q 038112          107 AGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDY  186 (625)
Q Consensus       107 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  186 (625)
                      ...+.+.|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..++++.+..+ .+...+..++.++...|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            344777888888888888888875 55688899999999999999999999999998853 3678889999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCCcchHHHHHHH--HHhcCChhhHHHHHH
Q 038112          187 MRAKEIWERLVMETSVYPNVVTYNVMING--LCKCGRFDECLEMWD  230 (625)
Q Consensus       187 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~  230 (625)
                      ++|++.|+++.+..  +.+...+..+..+  +.+.|++++|++.++
T Consensus        91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999988863  3445566666655  888899999999988

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.26  E-value=4.9e-06  Score=67.89  Aligned_cols=97  Identities=15%  Similarity=0.009  Sum_probs=63.5

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHH
Q 038112          470 TYSLLINGLCQSKKIDMALKLCCQFLQK----GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVP-NLV  539 (625)
Q Consensus       470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~  539 (625)
                      .+..+...+...|++++|...+++..+.    +.++ ....+..++.++...|++++|...+++..+.    +.++ ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            4455555666666666666666665541    1011 1345667777788888888888888777643    1111 145


Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ++..++.++...|++++|.+.++++++
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            677788888888999999988888776

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.23  E-value=5.7e-06  Score=62.85  Aligned_cols=83  Identities=4%  Similarity=-0.175  Sum_probs=74.4

Q ss_pred             hHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHH
Q 038112           19 HTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQR   98 (625)
Q Consensus        19 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   98 (625)
                      +.|+..|+.+++..  |.++.++..++.++...|++++|...|+.+++..+ .+...+..++.++...|++++|+..|++
T Consensus         2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46888999999887  89999999999999999999999999999999874 5788999999999999999999999999


Q ss_pred             hHHhhC
Q 038112           99 MNEIFG  104 (625)
Q Consensus        99 ~~~~~~  104 (625)
                      +....+
T Consensus        79 al~~~~   84 (115)
T 2kat_A           79 GLAAAQ   84 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            866443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.22  E-value=6.1e-05  Score=59.12  Aligned_cols=111  Identities=10%  Similarity=-0.050  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 038112          447 ERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDA  522 (625)
Q Consensus       447 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  522 (625)
                      +++++|+.+|++..+.| .|+..    +...|...+.+++|.+.|++..+.|   +...+..|..+|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            45677888888877765 23332    6666666677778888888888764   56777778888877    7788888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112          523 LQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER  568 (625)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  568 (625)
                      ..+|++..+.|   ++..+..|+..|..    .+++++|..+|+++.+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            88888888764   67777888888887    788888888888888854

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.20  E-value=1.8e-05  Score=74.24  Aligned_cols=121  Identities=12%  Similarity=-0.063  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112          244 YCSFIHGLCKAGNVEGAERVYREMVES---------------GIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL  308 (625)
Q Consensus       244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  308 (625)
                      +..+...+.+.|++++|+..|++.++.               ..+.+..++..+..+|.+.|++++|++.++.+....|.
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            455566666666777776666666541               01124567778888888889999999999888888888


Q ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038112          309 NVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAI  365 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  365 (625)
                      +..++..+..++...|++++|+..|+++.+..+. +...+..+...+...++.+++.
T Consensus       306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999988888887433 4555556666665555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.19  E-value=4.2e-06  Score=81.00  Aligned_cols=134  Identities=7%  Similarity=-0.126  Sum_probs=98.1

Q ss_pred             HHHccCChhHHHHHHHhhccCC------CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc----CCCCH---HHHH
Q 038112           11 LLKAEKNPHTALALFDSATREP------GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK----CYCPE---DVAL   77 (625)
Q Consensus        11 ~l~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~   77 (625)
                      .+..+|++++|+..++.++...      .+|....++..++.+|...|++++|+.++++++...    .+.++   ..++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3668999999999998887531      233445677888899999999999999999988642    12233   3667


Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV  157 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  157 (625)
                      .++..|..+|++++|..+++++                    +.+++..+..+.|....+.+.+..++...+.+++|..+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~A--------------------l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~  457 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKA--------------------YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM  457 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH--------------------HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999876                    44555555444233334456666777778888888888


Q ss_pred             HHHHHhC
Q 038112          158 FDEMFER  164 (625)
Q Consensus       158 ~~~~~~~  164 (625)
                      |..+.+.
T Consensus       458 ~~~~~~~  464 (490)
T 3n71_A          458 YHKMREA  464 (490)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=2e-06  Score=64.96  Aligned_cols=94  Identities=13%  Similarity=0.090  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-------HH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-------II  574 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~  574 (625)
                      +...+..++..+...|++++|+..|+++.+. .+.+...+..++.++...|++++|+..++++++  +.|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence            4556777777888888888888888888775 244677788888888888888888888888887  5664       44


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHH
Q 038112          575 SYNITLKGLCSCSRMSDAFEFLND  598 (625)
Q Consensus       575 ~~~~l~~~~~~~g~~~~A~~~~~~  598 (625)
                      .+..+..++...|++++|++.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhHHHH
Confidence            555566666666666655554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.12  E-value=0.00011  Score=73.11  Aligned_cols=172  Identities=8%  Similarity=-0.062  Sum_probs=112.4

Q ss_pred             hhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112          151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGD----------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG  220 (625)
Q Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  220 (625)
                      .++|+..+++++..++. +..+|+.-..++...|+          ++++++.++.+.+..  +.+..+|+.-.-++.+.+
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence            34567777777766433 44556655555555555          677777777777653  455666766666666667


Q ss_pred             --ChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 038112          221 --RFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG-NVEGAERVYREMVESGIFVDAVTYNAMIDGFCRA--------  289 (625)
Q Consensus       221 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  289 (625)
                        +++++++.++++.+..+ .+..+|+.-...+...| .++++++.++++++..+. +...|.....++...        
T Consensus       122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              55777777777776654 36666666666666666 677777777777666543 666666665555542        


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 038112          290 ------GKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVD  327 (625)
Q Consensus       290 ------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  327 (625)
                            +.++++++.+..+....|.+..+|+.+...+...++.+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence                  44677777887777777777777777777776666533

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.12  E-value=1.7e-05  Score=56.99  Aligned_cols=76  Identities=8%  Similarity=-0.044  Sum_probs=48.0

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      .++.++...|++++|+..|+.++...  |.++.++..++.++...|++++|.+.++++++..| .+...+..++.++..
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHh
Confidence            45566666666777777666666655  56666666666666666677777666666666643 355555555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.07  E-value=6e-06  Score=64.84  Aligned_cols=98  Identities=9%  Similarity=0.034  Sum_probs=67.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          481 SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK----------VEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK  550 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  550 (625)
                      .+.+++|.+.++..++.. +.+...|..+..++...++          +++|+..|++.++.+ +.+..+|..++.+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence            345666666666666653 3356666666666666554          458888888888752 3357778888888877


Q ss_pred             cC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038112          551 TG-----------DCDKALEIWNHILEERLRPDIISYNITLKG  582 (625)
Q Consensus       551 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  582 (625)
                      .|           ++++|++.|+++++  +.|+...|...+..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            64           78888888888888  78877666555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.01  E-value=2.9e-05  Score=58.84  Aligned_cols=79  Identities=18%  Similarity=0.141  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          486 MALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       486 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      .|...+++.++.. +.+...+..++.+|...|++++|+..|+++.+.. +.+...+..++.++...|++++|...|++++
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3556666666643 3356677777777777777777777777777652 3456677777777777777777777777776


Q ss_pred             H
Q 038112          566 E  566 (625)
Q Consensus       566 ~  566 (625)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.00  E-value=5e-05  Score=54.44  Aligned_cols=79  Identities=20%  Similarity=0.312  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~  581 (625)
                      ...+..++..+...|++++|...+++..+.. +.+...+..++.++...|++++|+..++++++  ..| +...+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~   85 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAKQNLGN   85 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence            3444555555555555555555555555431 23445555555555555555555555555555  333 3344444444


Q ss_pred             HHh
Q 038112          582 GLC  584 (625)
Q Consensus       582 ~~~  584 (625)
                      ++.
T Consensus        86 ~~~   88 (91)
T 1na3_A           86 AKQ   88 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.97  E-value=5.6e-09  Score=95.55  Aligned_cols=234  Identities=12%  Similarity=0.111  Sum_probs=142.2

Q ss_pred             CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112           36 HSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ  115 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  115 (625)
                      ..|.+|..++.+.++.++..+|++.|-   +.   .|+..|..++....+.|.+++-+.++..+.               
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaR---------------  110 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMAR---------------  110 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS---------------
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHH---------------
Confidence            456677777777777777766654432   21   244455566666666666666666666542               


Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHH
Q 038112          116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWER  195 (625)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  195 (625)
                                  +.  ..++..=+.++-+|++.++..+-.+.+       ..|+..-...++.-|...|.++.|.-+|..
T Consensus       111 ------------k~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~  169 (624)
T 3lvg_A          111 ------------KK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN  169 (624)
T ss_dssp             ------------TT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred             ------------HH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence                        22  123344466777788777765543322       235666677777778888888777766543


Q ss_pred             HHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 038112          196 LVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVD  275 (625)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  275 (625)
                                ...|..|..++.+.|++..|.+.-++      ..++.||..+-.+|...+.+.-|.-.--.++-..    
T Consensus       170 ----------isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha----  229 (624)
T 3lvg_A          170 ----------VSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----  229 (624)
T ss_dssp             ----------SCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----
T ss_pred             ----------CccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH----
Confidence                      23344555566677777766654433      2466777777778888777776655544444221    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112          276 AVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                       .-...++..|...|.+++-+.+++.-..........|+.|+-.|++- ++++..+.+
T Consensus       230 -deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHl  285 (624)
T 3lvg_A          230 -DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHL  285 (624)
T ss_dssp             -SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred             -HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence             11223556677778888877777777655445777777777777765 344444443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.95  E-value=2.8e-05  Score=57.08  Aligned_cols=67  Identities=10%  Similarity=0.079  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHh
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEI  102 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  102 (625)
                      |.++.++..++.++...|++++|++.|+.+++.+| .+...+..++.+|...|++++|+..|++....
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            78899999999999999999999999999999975 47778999999999999999999999988654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.94  E-value=3.9e-05  Score=56.23  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=38.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +...+..++.+|...|++++|+..|+++.+.+ +.+...|..++.+|...|++++|+..|+++++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45556666666666666666666666666542 33455666666666666666666666666655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.93  E-value=1.4e-05  Score=58.57  Aligned_cols=85  Identities=6%  Similarity=-0.070  Sum_probs=57.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHH-HHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPH-LFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYG   84 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~   84 (625)
                      -..+..+..+|++++|+..|+.+++..  |.++. ++..++.++...|++++|.+.|+.+++.+|. +...+..      
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH------
Confidence            345677777888888888888877766  77777 7777888888888888888888888877643 3333311      


Q ss_pred             ccCCchHHHHHHHHhHH
Q 038112           85 KNSMPDKALDVFQRMNE  101 (625)
Q Consensus        85 ~~~~~~~A~~~~~~~~~  101 (625)
                        +.+.++...|++...
T Consensus        75 --~~~~~a~~~~~~~~~   89 (99)
T 2kc7_A           75 --KMVMDILNFYNKDMY   89 (99)
T ss_dssp             --HHHHHHHHHHCCTTH
T ss_pred             --HHHHHHHHHHHHHhc
Confidence              344555555555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.89  E-value=0.00021  Score=69.26  Aligned_cols=131  Identities=11%  Similarity=-0.018  Sum_probs=94.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCC-C-ChhhHH
Q 038112          285 GFCRAGKIKECFELWEVMGRK-----GCL---NVVSYNILIRGLLENGKVDEAISIWELLREK-----NCN-A-DSTTHG  349 (625)
Q Consensus       285 ~~~~~~~~~~a~~~~~~~~~~-----~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~  349 (625)
                      .+..+|++++|+.++++....     ++.   ...+++.|+.+|...|++++|..++++.+..     |.. | ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            455788999999888877543     222   4567889999999999999999998887653     222 2 234577


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSR  426 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  426 (625)
                      .+...|...|++++|..++++           |..++........+....+...+..++...+.+++|..+|..+.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~-----------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICK-----------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHH-----------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999985           444444444444444445556666777778888888888887765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.72  E-value=0.00027  Score=50.44  Aligned_cols=70  Identities=13%  Similarity=-0.077  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHhhCCCC---hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCC
Q 038112           35 AHSPHLFHHILRRLIDPKL---VVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGC  105 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  105 (625)
                      |.++..+..++.++...++   .++|...++++++.+| .+......++..+.+.|++++|+..|+++++..|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            6778888888887754433   6888888888888874 47788888888888888888888888888665443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.71  E-value=6.9e-05  Score=54.80  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=68.5

Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHH
Q 038112           42 HHILRRLIDPKLVVHVSRILELIEIQKCYCPED-VALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAK  120 (625)
Q Consensus        42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~  120 (625)
                      ...+..+...|++++|.+.++.+++..+ .+.. .+..++.++...|++++|+..|+++....|..+.++.. +.+.++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~a~   81 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-KMVMDIL   81 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHH
Confidence            3466778889999999999999999874 4777 99999999999999999999999998888877766533 5566666


Q ss_pred             HHHHHHHH
Q 038112          121 RFLNSLWE  128 (625)
Q Consensus       121 ~~~~~~~~  128 (625)
                      ..|++...
T Consensus        82 ~~~~~~~~   89 (99)
T 2kc7_A           82 NFYNKDMY   89 (99)
T ss_dssp             HHHCCTTH
T ss_pred             HHHHHHhc
Confidence            66655443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.58  E-value=6.2e-06  Score=76.01  Aligned_cols=229  Identities=11%  Similarity=0.046  Sum_probs=129.7

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      +..+..+.|++++-++++..+++.   ..++..-..++.+|++.++..+.++.+    .   .++..-...++.-|...|
T Consensus        89 Vi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~  158 (624)
T 3lvg_A           89 VVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEK  158 (624)
T ss_dssp             HHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSC
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHcc
Confidence            333334444444444444443322   222333344444444444443332221    0   123334455666666777


Q ss_pred             CchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112           88 MPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE  167 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  167 (625)
                      .|+.|.-+|..+ ..+......+.+.|+++.|.+.-++      ..++.+|..+-.+|...+.+.-|...--.++-    
T Consensus       159 lYeAAKilys~i-sN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----  227 (624)
T 3lvg_A          159 MYDAAKLLYNNV-SNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----  227 (624)
T ss_dssp             CSTTSSTTGGGS-CCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----
T ss_pred             CHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----
Confidence            777777777665 4555555568888888887664333      34678999999999999998887655444442    


Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC------C
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKN-EREK------D  240 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~  240 (625)
                       .+.....++..|...|.+++-+.+++.....  .....-.|+.|.-.|++- ++++..+.++....+ +++.      .
T Consensus       228 -hadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~  303 (624)
T 3lvg_A          228 -HADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQ  303 (624)
T ss_dssp             -CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTT
T ss_pred             -cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence             2233445777788889999999988887643  244556677777777765 445444444332211 1111      2


Q ss_pred             hhhHHHHHHHHHhcCCHHHHH
Q 038112          241 SFTYCSFIHGLCKAGNVEGAE  261 (625)
Q Consensus       241 ~~~~~~l~~~~~~~~~~~~a~  261 (625)
                      ...|.-+.-.|..-.+++.|.
T Consensus       304 ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          304 AHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             TTCHHHHHHHHHHHTCHHHHH
T ss_pred             HhhHHHHHHHHhcchhHHHHH
Confidence            233555555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.48  E-value=0.0021  Score=58.39  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHH
Q 038112          502 DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISY  576 (625)
Q Consensus       502 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  576 (625)
                      ++.++..+...+...|++++|...++++...+  |+...|..++..+.-.|++++|.+.|++++.  +.|...+|
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~  346 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL  346 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence            44455444444444455555555555555532  4444455555555555555555555555555  45544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.47  E-value=0.00039  Score=53.90  Aligned_cols=90  Identities=12%  Similarity=-0.048  Sum_probs=72.7

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCCchHHH
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDPK---LVVHVSRILELIEIQKCY-CPEDVALSVIQAYGKNSMPDKAL   93 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~   93 (625)
                      ...+.+.|......+  +.+..+...++-++.+..   +..+++.+++.+.+.+.| .+.+.++.++-++.+.|+|++|+
T Consensus        14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            345666777766655  688999999999999988   666999999999998722 35678888999999999999999


Q ss_pred             HHHHHhHHhhCCCcch
Q 038112           94 DVFQRMNEIFGCEAGI  109 (625)
Q Consensus        94 ~~~~~~~~~~~~~~~~  109 (625)
                      +.++.+++..|.+..+
T Consensus        92 ~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcCCCCHHH
Confidence            9999998887765544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.41  E-value=0.0013  Score=46.80  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=29.8

Q ss_pred             CHHHHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          537 NLVTYNTLMDGLFKTGD---CDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       537 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      |+..+..++.++...++   .++|..+++++++  +.| +......+...+.+.|++++|+..|+++++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444444444433322   3455555555555  344 234444444455555555555555555553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.39  E-value=0.0034  Score=57.08  Aligned_cols=74  Identities=15%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 038112          535 VPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWH  612 (625)
Q Consensus       535 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  612 (625)
                      +.++.++..++..+...|++++|...+++++.  +.|+...|..+...+.-.|++++|.+.+++...  +.|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~--Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGID--LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence            55788888888888888999999999999999  568877777778888899999999999999886  457776654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.35  E-value=0.0024  Score=49.58  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHH
Q 038112          484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAG---KVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  558 (625)
                      ...+.+.|.+..+.+ +++..+...+.+++++.+   +.++++.+++...+.+ .|  +...+..|+-+|.+.|++++|+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            345566666666655 367888888888888888   5668888888888763 24  4667778888888888999999


Q ss_pred             HHHHHHHHcCCCCCH
Q 038112          559 EIWNHILEERLRPDI  573 (625)
Q Consensus       559 ~~~~~~~~~~~~p~~  573 (625)
                      ++++.+++  +.|+.
T Consensus        92 ~y~~~lL~--ieP~n  104 (152)
T 1pc2_A           92 KYVRGLLQ--TEPQN  104 (152)
T ss_dssp             HHHHHHHH--HCTTC
T ss_pred             HHHHHHHh--cCCCC
Confidence            98888888  77854

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.26  E-value=0.0011  Score=57.51  Aligned_cols=81  Identities=9%  Similarity=0.003  Sum_probs=45.5

Q ss_pred             hHHHHHHHhhccCCCCCC--CHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc-CCch
Q 038112           19 HTALALFDSATREPGYAH--SPHLFHHILRRLID-----PKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN-SMPD   90 (625)
Q Consensus        19 ~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~   90 (625)
                      ..|...++++++.+  |.  +..+|..++..|.+     -|+.+.|.+.|++++..+|..+..+....+..++.. |+++
T Consensus       180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            34555556665555  33  44555555555555     256666666666666665433455555566655553 5566


Q ss_pred             HHHHHHHHhHH
Q 038112           91 KALDVFQRMNE  101 (625)
Q Consensus        91 ~A~~~~~~~~~  101 (625)
                      +|.+.++++..
T Consensus       258 ~a~~~L~kAL~  268 (301)
T 3u64_A          258 GFDEALDRALA  268 (301)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666665544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.22  E-value=0.0023  Score=60.91  Aligned_cols=86  Identities=10%  Similarity=0.039  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCCH-HHHHHHHH
Q 038112          516 AGKVEDALQLYSNMKKR---NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEE-----R-LRPDI-ISYNITLK  581 (625)
Q Consensus       516 ~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~l~~  581 (625)
                      .|++++|..++++..+.   -+.|+    ..+++.|+.+|...|++++|..+++++++-     | -.|+. .+++.++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666665542   11122    345666777777777777777777766641     1 12222 45666777


Q ss_pred             HHhhcCChHHHHHHHHHHHH
Q 038112          582 GLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       582 ~~~~~g~~~~A~~~~~~~~~  601 (625)
                      .|...|++++|..++++.++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            77777777777777776653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.21  E-value=0.0015  Score=48.01  Aligned_cols=63  Identities=6%  Similarity=-0.064  Sum_probs=36.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCC-----CCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREP-----GYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      -.|+..+..+|++..|+..|+.+++..     +....+.++..++.++.+.|+++.|...++.+++..
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            355666666666666666666665432     112344555566666666666666666666666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.20  E-value=0.0016  Score=47.76  Aligned_cols=75  Identities=13%  Similarity=-0.097  Sum_probs=63.1

Q ss_pred             CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112           35 AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQK------CYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG  108 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  108 (625)
                      +.++..+..++..+.+.|++..|...|+.+++..      ......++..++.++.+.|+++.|+..+++++...|..+.
T Consensus         2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            3567888999999999999999999999999863      1235678899999999999999999999999887776655


Q ss_pred             h
Q 038112          109 I  109 (625)
Q Consensus       109 ~  109 (625)
                      +
T Consensus        82 ~   82 (104)
T 2v5f_A           82 A   82 (104)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.11  E-value=0.0012  Score=62.81  Aligned_cols=95  Identities=7%  Similarity=-0.126  Sum_probs=72.9

Q ss_pred             hCCCChhHHHHHHHHHHHhc----CCCCH---HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHH
Q 038112           49 IDPKLVVHVSRILELIEIQK----CYCPE---DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKR  121 (625)
Q Consensus        49 ~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  121 (625)
                      ...|++++|+.++++++...    .+.++   .+++.++.+|..+|++++|..++++.                    +.
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a--------------------L~  368 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI--------------------IK  368 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH--------------------HH
Confidence            35689999999999998742    12222   46778999999999999999999876                    44


Q ss_pred             HHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112          122 FLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      ++++....+.+....+++.+...|...|++++|..+++++.+
T Consensus       369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            555555544333455689999999999999999999998765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.09  E-value=0.0037  Score=59.54  Aligned_cols=92  Identities=18%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCCH-HH
Q 038112          510 IHGLCSAGKVEDALQLYSNMKKR---NCVPN----LVTYNTLMDGLFKTGDCDKALEIWNHILEE-----R-LRPDI-IS  575 (625)
Q Consensus       510 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~  575 (625)
                      +.-+...|++++|+.++++..+.   -+.|+    ..+++.|+.+|...|++++|+.+++++++-     | -.|+. .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33455677888888888877753   11222    456778888888888888888888877751     1 22322 46


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          576 YNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       576 ~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++.++..|...|++++|..+++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77788888888888888888887764

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.06  E-value=0.0063  Score=57.98  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=71.5

Q ss_pred             HHHHhccCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 038112          475 INGLCQSKKIDMALKLCCQFLQK---GFTPD----VTMYNILIHGLCSAGKVEDALQLYSNMKKR-----N-CVPN-LVT  540 (625)
Q Consensus       475 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~  540 (625)
                      +..+...|++++|..++++.++.   -+.|+    ..+++.++.+|...|++++|+.+++++...     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            44466778999999999988763   12222    557888999999999999999999988742     2 1222 557


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          541 YNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       541 ~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ++.|+..|...|++++|..+++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88999999999999999999999876

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.75  E-value=0.0038  Score=46.43  Aligned_cols=95  Identities=11%  Similarity=-0.053  Sum_probs=72.6

Q ss_pred             HccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhH---HHHHHHHHHHhcCC-CCHHHHHHHHHHHHccCC
Q 038112           13 KAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVH---VSRILELIEIQKCY-CPEDVALSVIQAYGKNSM   88 (625)
Q Consensus        13 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~   88 (625)
                      ........+...|.......  ++++.+-..++-++.+..+..+   ++.+++.+.+.+.| ...+..+.++-++.+.|+
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~   89 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence            34444556666777665544  5788888889989998888777   88899998887622 345677788888999999


Q ss_pred             chHHHHHHHHhHHhhCCCcch
Q 038112           89 PDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        89 ~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      |++|+..++.+++..|.+..+
T Consensus        90 Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           90 YEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH
Confidence            999999999998887766554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.74  E-value=0.012  Score=51.10  Aligned_cols=79  Identities=15%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHc-cC
Q 038112          484 IDMALKLCCQFLQKGFTPD---VTMYNILIHGLCS-----AGKVEDALQLYSNMKKRNCVP--NLVTYNTLMDGLFK-TG  552 (625)
Q Consensus       484 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g  552 (625)
                      ...|...+++.++.  .|+   ...|..++..|..     -|+.++|.+.|++.++.  .|  +..++...+..++. .|
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence            34566666666663  344   4456666666666     36777777777777764  33  35666666666665 36


Q ss_pred             ChhHHHHHHHHHHH
Q 038112          553 DCDKALEIWNHILE  566 (625)
Q Consensus       553 ~~~~A~~~~~~~~~  566 (625)
                      +.+++.+.+++++.
T Consensus       255 d~~~a~~~L~kAL~  268 (301)
T 3u64_A          255 NRAGFDEALDRALA  268 (301)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHc
Confidence            77777777777776

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.68  E-value=0.014  Score=43.50  Aligned_cols=86  Identities=14%  Similarity=0.062  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChhHHH
Q 038112          484 IDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED---ALQLYSNMKKRNCVP--NLVTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       484 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  558 (625)
                      ...+.+-+......| .++..+-..+++++.+..+...   ++.+++.+.+.+ .|  .......|+-++.+.|++++|+
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            344455555554444 3667777777778877776655   777777777653 23  3455667777788888888888


Q ss_pred             HHHHHHHHcCCCCCH
Q 038112          559 EIWNHILEERLRPDI  573 (625)
Q Consensus       559 ~~~~~~~~~~~~p~~  573 (625)
                      ++++.+++  +.|+.
T Consensus        95 ~~~~~lL~--~eP~n  107 (126)
T 1nzn_A           95 KYVRGLLQ--TEPQN  107 (126)
T ss_dssp             HHHHHHHH--HCTTC
T ss_pred             HHHHHHHH--hCCCC
Confidence            88888887  67743

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.64  E-value=0.016  Score=44.19  Aligned_cols=105  Identities=15%  Similarity=0.063  Sum_probs=65.9

Q ss_pred             CCCHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHhcCCCCHHHHHHHHHH------HHccCCchHHHHHHHHhHHh
Q 038112           35 AHSPHLFHHILRRLIDPKLV------VHVSRILELIEIQKCYCPEDVALSVIQA------YGKNSMPDKALDVFQRMNEI  102 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~  102 (625)
                      |.++..|...+..+-+.|+.      +...++|++++..-||.....+-..+..      +...++.++|+++|+.+   
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a---   86 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA---   86 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence            78899999988888888998      8888999999987654322222222221      12334555555555554   


Q ss_pred             hCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 038112          103 FGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVE  167 (625)
Q Consensus       103 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  167 (625)
                                              ++.+ +.-...|....+.-.++|+...|.+++...+..+..
T Consensus        87 ------------------------~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           87 ------------------------RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             ------------------------HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             ------------------------HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence                                    3322 222555666666666777777777777777776544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.58  E-value=0.03  Score=42.74  Aligned_cols=109  Identities=15%  Similarity=0.065  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHccCCc------hHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 038112           70 YCPEDVALSVIQAYGKNSMP------DKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVIN  143 (625)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  143 (625)
                      |.++++|...+..+-+.|++      +..+++|+++....|...     .+.++.=               ...|...+.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-----~~~wrrY---------------I~LWIrYA~   69 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-----YGQNESF---------------ARIQVRFAE   69 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-----GTTCHHH---------------HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-----cccHHHH---------------HHHHHHHHH
Confidence            45788888888888888888      777777777654333210     1111111               111222221


Q ss_pred             HHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038112          144 GLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMET  200 (625)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  200 (625)
                       +...++.+.|.++|+.+++.+-.- ...|...++.-.++|+...|++++......+
T Consensus        70 -~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           70 -LKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             -HHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -HHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence             134589999999999998763333 6677777788889999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.30  E-value=0.26  Score=51.95  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHH
Q 038112          311 VSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       311 ~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                      ..|..++..+.+.++++.|.+.|
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y  704 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAF  704 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHH
Confidence            33333444444444443333333

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.17  Score=40.44  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=86.5

Q ss_pred             HHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 038112          442 GLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVED  521 (625)
Q Consensus       442 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  521 (625)
                      ...+.|+++.|.++.+.+      .+...|..+.......|+++-|.++|.+..+         +..+.-.|...|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345678999998887665      3678899999999999999999999887643         2344555667888877


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          522 ALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       522 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      -.++-+.....|   +   ++....++...|++++++++|.+.-.   -|...      ......|-.+.|.++.+++
T Consensus        79 L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            777666666553   1   34445567788999999988755432   22111      1122256677788887766

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.05  E-value=0.098  Score=55.25  Aligned_cols=99  Identities=13%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             HhcCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 038112          409 IQASKLENAIF-LFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMA  487 (625)
Q Consensus       409 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  487 (625)
                      ...++++.|.+ ++..+      ++......++..+.+.|.+++|+++.++..            .-.......|+++.|
T Consensus       610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A  671 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA  671 (814)
T ss_dssp             HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence            45677777766 44211      112233566666777788777776553211            112334566888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 038112          488 LKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKK  531 (625)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  531 (625)
                      .++.+.+      .+...|..++..+.+.|+++.|.++|.++..
T Consensus       672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            7775432      3567888888888888888888888887653

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.80  E-value=1.8  Score=43.23  Aligned_cols=74  Identities=9%  Similarity=-0.008  Sum_probs=37.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038112          282 MIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGY  360 (625)
Q Consensus       282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  360 (625)
                      .+..+.+.+++...+.++..    .|.+...-.....+....|+..+|....+.+-..+.. .+.....++..+.+.|.
T Consensus        78 ~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~  151 (618)
T 1qsa_A           78 FVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGK  151 (618)
T ss_dssp             HHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCC
Confidence            34445555665555543332    2335555555556666666666665555555444322 34444555555554444

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.59  Score=37.32  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=19.8

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 038112          287 CRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWEL  335 (625)
Q Consensus       287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  335 (625)
                      .+.|+++.|.++.+.+     .+...|..|.......|+++-|.+.|.+
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3444444444444333     1344444444444444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.67  E-value=2.5  Score=44.02  Aligned_cols=212  Identities=11%  Similarity=0.072  Sum_probs=120.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HhccCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHH
Q 038112          403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLING--LCKVERFGEAYSFVKEMLEKGWKPDMIT--YSLLINGL  478 (625)
Q Consensus       403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~  478 (625)
                      ++...+.-.|+-+....++..+.+.   .+......+..+  +...|+.+.+..+++.+... ..|....  ...+.-+|
T Consensus       495 ALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAy  570 (963)
T 4ady_A          495 GMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAY  570 (963)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHT
T ss_pred             HHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence            4445566778888888888777653   133333333333  44678888888888888763 1222221  22445567


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-hHH
Q 038112          479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDC-DKA  557 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A  557 (625)
                      +..|+.....++++.+.... ..+..-...+.-++...|+.+.+.+++..+.+.+ .|....-..++-+....|.. .++
T Consensus       571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a  648 (963)
T 4ady_A          571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA  648 (963)
T ss_dssp             TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred             cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence            88899887777888887642 2233333344445556777777777777666653 44444444444444445544 578


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhh--cC-------ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCC
Q 038112          558 LEIWNHILEERLRPDIISYNITLKGLCS--CS-------RMSDAFEFLNDALC-RGILPTTITWHILVRAVMNNGA  623 (625)
Q Consensus       558 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g-------~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~  623 (625)
                      +..+..+..   .+|..+-...+.++..  .|       +....++.+.+... +.-.++...-..+..++...|.
T Consensus       649 id~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~  721 (963)
T 4ady_A          649 IDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG  721 (963)
T ss_dssp             HHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred             HHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence            888888875   5666554444443332  23       33333444334332 1222334455566666666654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.64  E-value=0.81  Score=43.74  Aligned_cols=173  Identities=13%  Similarity=0.070  Sum_probs=108.2

Q ss_pred             CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----hccCCHHHH--HHHHHHHHH--CC-
Q 038112          393 GCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGL----CKVERFGEA--YSFVKEMLE--KG-  463 (625)
Q Consensus       393 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a--~~~~~~~~~--~~-  463 (625)
                      +..........++..|...++++...+.+..+...... .......+++.+    ......+..  ..+.+.+..  .| 
T Consensus        51 d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k  129 (445)
T 4b4t_P           51 DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK  129 (445)
T ss_dssp             STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred             chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence            34556777888999999999999988888776653222 122223333322    222322221  111111110  01 


Q ss_pred             CCC---CHhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh----
Q 038112          464 WKP---DMITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPD---VTMYNILIHGLCSAGKVEDALQLYSNMKK----  531 (625)
Q Consensus       464 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----  531 (625)
                      +-.   .......+...+...|++.+|..++..+...  +..+.   ...+...++.|...+++.+|..++.++..    
T Consensus       130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~  209 (445)
T 4b4t_P          130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK  209 (445)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence            111   1123356778888999999999999988642  22211   34666777889999999999999988753    


Q ss_pred             CCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          532 RNCVPN--LVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       532 ~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      ...+|+  ...+...+..+...+++.+|...|.++.+
T Consensus       210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            222233  34567778888899999999998888876

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.50  E-value=0.53  Score=35.16  Aligned_cols=139  Identities=12%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112          410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK  489 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  489 (625)
                      -.|..++..++..+....   .+..-||.+|--....-+-+-..++++..-+- +  |          ....|+......
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHH
Confidence            456667777777666553   24444444443333444444444444444321 1  1          123345554444


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112          490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL  569 (625)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  569 (625)
                      .+-.+     ..+...+...+..+...|.-++-.+++..+... .+|++.....++.+|.+.|+..+|.+++.++.++|+
T Consensus        83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            44332     124455556667777778888877777775443 467777788888888888888888888888887765


Q ss_pred             C
Q 038112          570 R  570 (625)
Q Consensus       570 ~  570 (625)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.50  E-value=2.9  Score=43.58  Aligned_cols=257  Identities=11%  Similarity=0.035  Sum_probs=137.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CcH--HHHHHH
Q 038112          249 HGLCKAGNVEGAERVYREMVESGIFVDA--VTYNAMIDGFCRAGKIKECFELWEVMGRKGC--------LNV--VSYNIL  316 (625)
Q Consensus       249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~--~~~~~l  316 (625)
                      -+....|+.++++.++...+..+...+.  ..-..+.-+....|...++.+++........        +..  .+...|
T Consensus       382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            3566788888888888776652111122  2333344445555655667777766554322        111  122233


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCC
Q 038112          317 IRGLLENGKVDEAISIWELLREKNCNADST--THGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC  394 (625)
Q Consensus       317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  394 (625)
                      ..++.-.++ +++.+.+..+..... +...  ....+...+...|+-+....++..                  +.... 
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~------------------~~e~~-  520 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTY------------------SQETQ-  520 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHH------------------HHHCS-
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHH------------------HhccC-
Confidence            333333444 355555555554321 1111  111233344566776666666652                  22221 


Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HH---HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhh
Q 038112          395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVS-YN---TLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT  470 (625)
Q Consensus       395 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  470 (625)
                      .-+..-...+.-++...|+.+.+..+.+.+...   .++.. |.   .+.-+|+..|+......++..+.+. ...+...
T Consensus       521 ~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRr  596 (963)
T 4ady_A          521 HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRR  596 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHH
T ss_pred             cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHH
Confidence            112222333444455778888888888888763   23322 22   3445677889988777799988874 2223333


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHh
Q 038112          471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKV-EDALQLYSNMKK  531 (625)
Q Consensus       471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~  531 (625)
                      ...+.-++...|+.+.+.+++..+.+.+ .|....-..++-+....|+. .++...+..+..
T Consensus       597 aAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          597 AAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            3333334455677777777777666653 44444434444444445543 678888888875

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.21  E-value=0.57  Score=35.56  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=52.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          500 TPDVTMYNILIHGLCSAGKV---EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       500 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      .|+..+-..+++++.+..+.   .+++.+++.+.+.+..........|+-++.+.|++++|+++.+.+++  +.|+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n  110 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  110 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence            56777777778888877654   46777887777643222455667778888888888888888888888  77754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.12  E-value=0.23  Score=37.15  Aligned_cols=73  Identities=15%  Similarity=0.126  Sum_probs=50.2

Q ss_pred             CCCCHHHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH
Q 038112          499 FTPDVTMYNILIHGLCSAGKV---EDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       499 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      ..|+..+-..+++++.+..+.   .+++.+++.+.+.+.......+..|+-++.+.|++++|+++.+.+++  +.|+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N  111 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  111 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence            356677777777777776654   45777777777653112355667777788888888888888888887  67754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.04  E-value=0.054  Score=42.37  Aligned_cols=93  Identities=11%  Similarity=-0.000  Sum_probs=67.4

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCCC-------HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC------------
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAHS-------PHLFHHILRRLIDPKLVVHVSRILELIEIQKC------------   69 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------   69 (625)
                      .+.+...|-|+.|+.....++...+.+++       ..++..++.++...|+|..|...|+++++..-            
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            35566778899998888876554322232       14667788899999999999999999865320            


Q ss_pred             ------------CCCHHHHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112           70 ------------YCPEDVALSVIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        70 ------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                                  +.+.++.+.++.+|.+.+++++|+.+++.+|.
T Consensus       107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence                        11125677888888888888888888888754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.77  E-value=0.27  Score=37.28  Aligned_cols=75  Identities=12%  Similarity=-0.099  Sum_probs=59.4

Q ss_pred             CCCHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           35 AHSPHLFHHILRRLIDPKLV---VHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      .+++.+-...+-++.+..+.   ..++.+++.+.+.++....+....++-++.+.|+|++|+++.+.+++..|.+..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            56777777777777776654   4688899999988765566777888889999999999999999998877765544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.68  E-value=0.62  Score=34.82  Aligned_cols=79  Identities=14%  Similarity=0.050  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 038112          533 NCVPNLVTYNTLMDGLFKTGDC---DKALEIWNHILEERLRP--DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT  607 (625)
Q Consensus       533 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  607 (625)
                      +-.|+..+--.+++++.+..+.   .+++.+++.+.+.+  |  ....+..++-++.+.|++++|+++.+.+++  +.|+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~  110 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN  110 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence            3467888888899999987755   46889999998843  5  346777888899999999999999999996  5687


Q ss_pred             HHHHHHHH
Q 038112          608 TITWHILV  615 (625)
Q Consensus       608 ~~~~~~l~  615 (625)
                      ..--..|-
T Consensus       111 N~QA~~Lk  118 (134)
T 3o48_A          111 NKQVGALK  118 (134)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            65444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.28  E-value=0.23  Score=50.45  Aligned_cols=52  Identities=21%  Similarity=0.160  Sum_probs=26.4

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 038112          546 DGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDA  599 (625)
Q Consensus       546 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  599 (625)
                      ..+...|+++-|+++.++++.  ..| +..+|..|+.+|.+.|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            334445555555555555555  334 3355555555555555555555555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.20  E-value=1.3  Score=33.19  Aligned_cols=138  Identities=19%  Similarity=0.118  Sum_probs=91.2

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 038112          446 VERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQL  525 (625)
Q Consensus       446 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  525 (625)
                      .|..++..++..+....   .+..-++.++--....-+-+-..+.++.+-+. +  |          ...+|+.......
T Consensus        20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~C   83 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC   83 (172)
T ss_dssp             TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHHH
Confidence            56667777777666653   23444444443333333433344444433221 1  1          1345666666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 038112          526 YSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGIL  605 (625)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  605 (625)
                      +-.+-.     +.......+......|..++-.+++..++.. -+|+++....+..+|.+.|+..+|.++++++-+.|++
T Consensus        84 ~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           84 GVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            544332     4555667778888999999999999996542 6789999999999999999999999999999998865

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=93.51  E-value=4  Score=36.58  Aligned_cols=107  Identities=12%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCcCHHHHHHHHHHHH
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVY----REMVESGIFVDAVTYNAMIDGFC  287 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~  287 (625)
                      +..-|.+.+++++|++++..-.               ..+.+.|+...|-++-    +-..+.+++++......++..+.
T Consensus        41 i~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           41 VAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3444666667776666654321               1222334443333332    33333455556555555555554


Q ss_pred             hcCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 038112          288 RAGK--------IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIW  333 (625)
Q Consensus       288 ~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  333 (625)
                      ....        ..+|+++-.........++.....+...|.+.+++.+|...|
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            4332        112222222211111127777777888888888888877766

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.44  E-value=0.45  Score=48.32  Aligned_cols=126  Identities=11%  Similarity=0.067  Sum_probs=78.8

Q ss_pred             HHHHHHHhcCC-hhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCc-CH-----
Q 038112          211 VMINGLCKCGR-FDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAG-NVEGAERVYREMVES------GIFV-DA-----  276 (625)
Q Consensus       211 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-----  276 (625)
                      .++..+...++ .+.|..+|+++....+..+......++......+ .--+|.+++.+.++.      ...+ +.     
T Consensus       253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            34444445555 4778888888876643222211222232222222 233455555554421      1111 11     


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112          277 -----VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELL  336 (625)
Q Consensus       277 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  336 (625)
                           .....-...+...|+++-|+++-++.....|.+-.+|..|..+|...|+++.|+-.++.+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                 122233455667899999999999999999999999999999999999999999888766

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.22  E-value=4.3  Score=36.11  Aligned_cols=108  Identities=13%  Similarity=0.079  Sum_probs=53.5

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCcCHHHHHHHHHHHH
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERV----YREMVESGIFVDAVTYNAMIDGFC  287 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~  287 (625)
                      +..-|.+.+++++|++++..-.               ..+.+.|+...|-++    .+-..+.+++++......++..+.
T Consensus        39 l~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           39 IANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            3344556666666666654321               122333444443332    333344456666665555555554


Q ss_pred             hcCCHH-HHHHHHHHH----HhcC---CCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 038112          288 RAGKIK-ECFELWEVM----GRKG---CLNVVSYNILIRGLLENGKVDEAISIWE  334 (625)
Q Consensus       288 ~~~~~~-~a~~~~~~~----~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~  334 (625)
                      ....-+ .-.++++.+    .+.+   ..++..+..+...|.+.|++.+|...|-
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            432111 111222222    1221   1277777778888888888877776653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.05  E-value=0.66  Score=43.44  Aligned_cols=70  Identities=7%  Similarity=0.079  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHH
Q 038112          505 MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE-----ERLRPDIIS  575 (625)
Q Consensus       505 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~  575 (625)
                      +...++..+...|+++++...+..+... .+-+...+..++.++.+.|+..+|++.|+++.+     .|+.|+..+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            4444555566667777777666666654 244566666677777777777777776666543     366665543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.59  E-value=1  Score=35.30  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=10.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHH
Q 038112          174 NILIDGFFKKGDYMRAKEIWERL  196 (625)
Q Consensus       174 ~~l~~~~~~~g~~~~a~~~~~~~  196 (625)
                      ..++..+...|++.+|...|++.
T Consensus        67 ~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           67 VYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH
Confidence            33444444444444444444443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.23  E-value=10  Score=37.86  Aligned_cols=80  Identities=8%  Similarity=-0.056  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 038112          414 LENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQ  493 (625)
Q Consensus       414 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  493 (625)
                      ..++...+......  ..+.....-.+....+.|+++.|...|..|.... .........+.+++...|+.++|..+|..
T Consensus       268 ~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~  344 (618)
T 1qsa_A          268 TDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQ  344 (618)
T ss_dssp             CHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555544332  1233223333333445677777777776665421 11233344556666677777777777777


Q ss_pred             HHh
Q 038112          494 FLQ  496 (625)
Q Consensus       494 ~~~  496 (625)
                      +..
T Consensus       345 ~a~  347 (618)
T 1qsa_A          345 LMQ  347 (618)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.09  E-value=1.3  Score=41.40  Aligned_cols=72  Identities=10%  Similarity=0.115  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 038112          278 TYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLRE-----KNCNADSTTHG  349 (625)
Q Consensus       278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  349 (625)
                      +...++..+...|+++++...+..+....|.+...|..++.++...|+..+|++.|+.+..     .|+.|+..+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3445677788899999999999999999888999999999999999999999999988754     48888776643

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.28  E-value=2.8  Score=29.44  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112          518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL  580 (625)
Q Consensus       518 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  580 (625)
                      +.-+..+-++.+...+..|++.+....+++|.+.+|+.-|+++++-+..+ ..+...+|..++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence            34455555566666666666666666666666666666666666666553 222333444443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.09  E-value=1.6  Score=30.52  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHH
Q 038112          116 FEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILI  177 (625)
Q Consensus       116 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  177 (625)
                      .-+.++-++.+...++-|++....+.+++|.+.+++..|.++|+-++.. ......+|..++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l   86 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   86 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence            3455666666677777788888888888888888888888888877765 222334455554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.71  E-value=4.4  Score=44.34  Aligned_cols=51  Identities=12%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038112          212 MINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREM  267 (625)
Q Consensus       212 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  267 (625)
                      ++..+...+..+-+.++..-.     +.++..-..++.++...|++++|.+.|.+.
T Consensus       818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka  868 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT  868 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            344444455555544433222     223333344556666666666666666543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.55  E-value=17  Score=39.83  Aligned_cols=188  Identities=14%  Similarity=0.087  Sum_probs=112.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCC----C------------
Q 038112          174 NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNE----R------------  237 (625)
Q Consensus       174 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------------  237 (625)
                      ..++..+...+.++.+.++....      +.+....-.++.++...|++++|.++|++....-    .            
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            34556666777777776654432      2333344556778888999999999997653110    0            


Q ss_pred             ------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038112          238 ------EKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA----VTYNAMIDGFCRAGKIKECFELWEVMGRKGC  307 (625)
Q Consensus       238 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  307 (625)
                            ..-..-|..++..+-+.+.++.+.+.-...++.....+.    ..|..++..+...|++++|...+-.+.... 
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-  968 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-  968 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence                  001123667778888888888888888777664322222    257778889999999999988887776543 


Q ss_pred             CcHHHHHHHHHHHHhCCCH------------HHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 038112          308 LNVVSYNILIRGLLENGKV------------DEAISIWELLREK--NCNADSTTHGVLINGLCKNGYLNKAIQIL  368 (625)
Q Consensus       308 ~~~~~~~~l~~~~~~~~~~------------~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  368 (625)
                      .-......|+..++..|..            ++..+++....+.  .+...+.-|..|-.-+..+|++..|-.++
T Consensus       969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B          969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp             SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence            2455666677666665554            3444444322211  11111223444555556667766655543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.25  E-value=13  Score=35.44  Aligned_cols=93  Identities=12%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-C--cHHH
Q 038112          245 CSFIHGLCKAGNVEGAERVYREMVES--GIFVD---AVTYNAMIDGFCRAGKIKECFELWEVMGR----KGC-L--NVVS  312 (625)
Q Consensus       245 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~--~~~~  312 (625)
                      ..|...+...|++.+|..++..+...  +....   ...+...++.|...+++..|..++..+..    ..+ +  -...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            34555566666666666666665432  11111   23444555666666666666666665432    111 1  1234


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHH
Q 038112          313 YNILIRGLLENGKVDEAISIWELLR  337 (625)
Q Consensus       313 ~~~l~~~~~~~~~~~~a~~~~~~~~  337 (625)
                      +...+..+...+++.+|.+.|..+.
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            4455555556666666665555443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.83  E-value=12  Score=34.62  Aligned_cols=170  Identities=11%  Similarity=-0.006  Sum_probs=93.2

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHCCCCCC-----HhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHH----
Q 038112          438 TLINGLCKVERFGEAYSFVKEMLEKGWKPD-----MITYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMY----  506 (625)
Q Consensus       438 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~----  506 (625)
                      .++..|...|++.+|..++.++.+.--..|     ...+...+..|...+++.++...+......  .+.+++.+.    
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            567788889999999888888776411112     234555567788889999998888777542  222333322    


Q ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHhC-C-C-CCC-HHHHHHHHHHHHccCChhHHHHHHH-HHHHcCCCCCHHHHHHHH
Q 038112          507 NILIHGLC-SAGKVEDALQLYSNMKKR-N-C-VPN-LVTYNTLMDGLFKTGDCDKALEIWN-HILEERLRPDIISYNITL  580 (625)
Q Consensus       507 ~~l~~~~~-~~g~~~~A~~~~~~~~~~-~-~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~  580 (625)
                      ..-+..+. ..++|..|...|-+..+. . . .|. ......++-+..-.++..+-..++. +....-..|+...+..++
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~  263 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVA  263 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHH
Confidence            22234455 788999998887766532 1 0 111 1111222223333344333333222 211111345555555666


Q ss_pred             HHHhhcCChHHHHHHHHHHHHCCCCCCHH
Q 038112          581 KGLCSCSRMSDAFEFLNDALCRGILPTTI  609 (625)
Q Consensus       581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  609 (625)
                      .+| ..+++.+..++++.... .+..|+.
T Consensus       264 ~a~-~~~dl~~f~~iL~~~~~-~l~~D~~  290 (394)
T 3txn_A          264 EAS-HKRSLADFQAALKEYKK-ELAEDVI  290 (394)
T ss_dssp             HHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred             HHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence            554 45677777777666543 2445554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.87  E-value=5.9  Score=29.58  Aligned_cols=62  Identities=11%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038112          518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDIISYNITL  580 (625)
Q Consensus       518 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~  580 (625)
                      +.-+..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-+..+ ..+...+|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence            34455555666666667777777777777777777777777777766654 333444555544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.29  E-value=4.2  Score=38.62  Aligned_cols=97  Identities=9%  Similarity=-0.132  Sum_probs=56.9

Q ss_pred             hHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHH--HHH
Q 038112          470 TYSLLINGLCQSKKIDMALKLCCQFLQK--GFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKR---NCVPNLV--TYN  542 (625)
Q Consensus       470 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~--~~~  542 (625)
                      +...++..|.+.|+++.|.+++.++...  +...-...+..+++.+...+++..+...+.++...   +..|+..  ...
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4566777777777777777777777653  22223556666677777777777777777766532   2122211  111


Q ss_pred             HHHHHHHccCChhHHHHHHHHHHH
Q 038112          543 TLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       543 ~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      .-+..+...+++..|...|-++..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence            223334456677777666666554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.88  E-value=11  Score=32.36  Aligned_cols=58  Identities=9%  Similarity=0.012  Sum_probs=45.5

Q ss_pred             HHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112           46 RRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        46 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  104 (625)
                      ..+.+.|++.+++.....-++.+ |.|......+++.++-.|+++.|...++.+.+..|
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p   62 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   62 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            35667888888888888888886 45888888888888888888888888887755433

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=87.36  E-value=3.7  Score=30.61  Aligned_cols=63  Identities=13%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILID  178 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  178 (625)
                      |.-+.++-++.+...++-|++......+++|.+.+|+..|.++|+-++.. ..+...+|..++.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            34466777777778888899999999999999999999999999988766 3334445666553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.99  E-value=16  Score=32.50  Aligned_cols=164  Identities=15%  Similarity=0.078  Sum_probs=86.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHhhHHHHHHHH
Q 038112          403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF----VKEMLEKGWKPDMITYSLLINGL  478 (625)
Q Consensus       403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~  478 (625)
                      .+..-|.+.+++++|++++..-..               .+.+.|+...|-++    ++...+.+.+++......++..+
T Consensus        38 tl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           38 TIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344556777778887777655332               13344555444443    44444556677776666666665


Q ss_pred             hccCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112          479 CQSKKID-MALKLCCQFLQ----KG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT  551 (625)
Q Consensus       479 ~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  551 (625)
                      .....-+ .=.++++++++    .|  ..-++.....++..|.+.|++.+|...|-.    +-..+...+..++.-+...
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHh
Confidence            4432111 11233333332    11  123677788888888888888888876641    1111344555554444443


Q ss_pred             ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          552 ---GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       552 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                         |...++--++-               ..+--|.-.|+...|..+++...
T Consensus       179 ~~~~~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          179 VDDIEDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             TTCCCHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHH
Confidence               43333222111               11223445677777777777654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.70  E-value=20  Score=33.26  Aligned_cols=97  Identities=12%  Similarity=0.001  Sum_probs=45.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 038112          350 VLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHG-CKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK-  427 (625)
Q Consensus       350 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  427 (625)
                      .++..|...|++.+|..++.++..              .+...+ ...-..++..-+..|...+++.++...+...... 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~--------------~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~  169 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLR--------------ELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA  169 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--------------HHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH--------------HHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence            345556666666666665554332              121111 0112233444455666667777776666665432 


Q ss_pred             -CCCCChhhHH----HHHHHHh-ccCCHHHHHHHHHHHH
Q 038112          428 -GCSPTVVSYN----TLINGLC-KVERFGEAYSFVKEML  460 (625)
Q Consensus       428 -~~~~~~~~~~----~l~~~~~-~~~~~~~a~~~~~~~~  460 (625)
                       .+.+++....    .-...+. ..++|..|...|-+..
T Consensus       170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence             1112222211    1122234 5667777766665543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.50  E-value=20  Score=32.17  Aligned_cols=164  Identities=10%  Similarity=0.052  Sum_probs=88.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHhhHHHHHHHH
Q 038112          403 SLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSF----VKEMLEKGWKPDMITYSLLINGL  478 (625)
Q Consensus       403 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~  478 (625)
                      ++..-|.+.+++++|++++..-..               .+.+.|+...|-++    ++-..+.+++++......++..+
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344457777888888877655332               13334554444333    34444456667766666666665


Q ss_pred             hccCCHH-HHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112          479 CQSKKID-MALKLCCQFLQ----KG--FTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT  551 (625)
Q Consensus       479 ~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  551 (625)
                      .....-+ .=..+++++++    .|  ..-++.....++..|.+.+++.+|...|-  .  |..++...+..++.-+...
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~  180 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQ  180 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHh
Confidence            5444211 11223333322    11  23467777888899999999999888772  2  2233445665555444443


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          552 GDCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       552 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      +...++--+               ....+--|.-.++...|..+++...
T Consensus       181 ~~~~e~dlf---------------iaRaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          181 DESHTAPLY---------------CARAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             SCGGGHHHH---------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCccHHHH---------------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            332211111               1122223555677888877766655

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.73  E-value=11  Score=35.79  Aligned_cols=64  Identities=8%  Similarity=-0.101  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112           38 PHLFHHILRRLIDPKLVVHVSRILELIEIQKC--YCPEDVALSVIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      ..+...++..+.+.|+++.|.+.|.++...-.  ..-.+.+...++++...+++..+...+.++..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34556666777777777777777777665322  22334556666666667777777666666633

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.99  E-value=13  Score=30.29  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          516 AGKVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       516 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                      .++..++..+|..|...|+-.. ...|...+..+...|++.+|.++|+..++.+..|
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            5557788999999988876554 6667788888888999999999999999987777

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.25  E-value=13  Score=30.38  Aligned_cols=58  Identities=19%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH
Q 038112          481 SKKIDMALKLCCQFLQKGFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNL  538 (625)
Q Consensus       481 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  538 (625)
                      .++...+..+|..|...|+.. -+..|...+..+...|++.+|..+|+..++.+-.|-.
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~  150 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN  150 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence            445779999999999876654 3667888889999999999999999999998777743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	625
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 41/328 (12%), Positives = 90/328 (27%), Gaps = 21/328 (6%)

Query: 288 RAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKN------- 340
           +AG  +        + R+   N     +L     +  ++D +     L  ++N       
Sbjct: 11  QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 341 ------CNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGC 394
                           + +           I     +            ++   +     
Sbjct: 71  SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130

Query: 395 KLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYS 454
             + Y   S +   ++A             + +      V+++ L            A  
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

Query: 455 FVKEMLEKGWKPDMI-TYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGL 513
             ++ +     P+ +  Y  L N L +++  D A+    + L       V   N L    
Sbjct: 191 HFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-LACVY 247

Query: 514 CSAGKVEDALQLYSNMKKRNCVPNLV-TYNTLMDGLFKTGDCDKALEIWNHILEERLRPD 572
              G ++ A+  Y    +    P+    Y  L + L + G   +A + +N  L       
Sbjct: 248 YEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305

Query: 573 IISYNITLKGLCSCSRMSDAFEFLNDAL 600
               N+          + +A      AL
Sbjct: 306 DSLNNLANI-KREQGNIEEAVRLYRKAL 332

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 35/308 (11%), Positives = 86/308 (27%), Gaps = 19/308 (6%)

Query: 320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE------ 373
             + G  + A      L  +  + ++    +L +   +   L+++        +      
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67

Query: 374 ------GGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRK 427
                 G   +            +H  +L     +  +N         +     +     
Sbjct: 68  EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127

Query: 428 GCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMIT-YSLLINGLCQSKKIDM 486
                 +       G           +    +     +P+    +S L        +I +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187

Query: 487 ALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMD 546
           A+    + +       +  Y  L + L  A   + A+  Y      +   + V +  L  
Sbjct: 188 AIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC 245

Query: 547 GLFKTGDCDKALEIWNHILEERLRPDIISYNITL-KGLCSCSRMSDAFEFLNDALCRGIL 605
             ++ G  D A++ +   +E  L+P        L   L     +++A +  N AL     
Sbjct: 246 VYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303

Query: 606 PTTITWHI 613
                 ++
Sbjct: 304 HADSLNNL 311

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	625
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.76
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.7
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.42
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.42
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.34
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.32
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.3
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.27
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.25
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.02
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.92
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.88
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.88
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.76
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.56
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.39
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.38
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.33
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.24
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.23
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.9
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.81
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.79
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.78
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.76
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.35
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.27
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.25
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.16
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.56
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.05
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.48
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.35
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.51

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-24  Score=208.65  Aligned_cols=378  Identities=15%  Similarity=0.066  Sum_probs=319.0

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .++....+.|++++|+..|+.+++..  |.++.++..++.++.+.|++++|...++.+++.+| .+..++..++.+|.+.
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER   80 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhh
Confidence            47888899999999999999999887  89999999999999999999999999999999974 5788999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch-------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHH
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI-------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFD  159 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  159 (625)
                      |++++|+..+.......+.....       ....+....+........... .................+....+...+.
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHH
Confidence            99999999999998876666555       444556666666666555544 3445555566666778888888988888


Q ss_pred             HHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          160 EMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       160 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      ...... +.+...+..++..+...|++++|...++...+..  +.+..++..+...+...|++++|+..+++.....+ .
T Consensus       160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~  235 (388)
T d1w3ba_         160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N  235 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred             HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-h
Confidence            888764 3366788889999999999999999999988763  45667889999999999999999999999887654 4


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRG  319 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  319 (625)
                      +...+..+...+...|++++|+..|+++++..+. +..++..+..++...|++++|++.++......|.+...+..+..+
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  314 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence            6777888999999999999999999999987543 678899999999999999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHH
Q 038112          320 LLENGKVDEAISIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAY  399 (625)
Q Consensus       320 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  399 (625)
                      +...|++++|+..|++..+..+. +..++..+...+...|++++|...++++.                  +.. |-+..
T Consensus       315 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------~l~-P~~~~  374 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAI------------------RIS-PTFAD  374 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------TTC-TTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------HhC-CCCHH
Confidence            99999999999999999887543 57778889999999999999999999533                  322 22566


Q ss_pred             HHHHHHHHHHhcCC
Q 038112          400 TCNSLMNGFIQASK  413 (625)
Q Consensus       400 ~~~~l~~~~~~~~~  413 (625)
                      .+..+..+|.+.||
T Consensus       375 a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         375 AYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            78888888877664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-23  Score=201.05  Aligned_cols=217  Identities=17%  Similarity=0.151  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 038112          399 YTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGL  478 (625)
Q Consensus       399 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  478 (625)
                      ..+..+...+...|+++.|...+++..+..+ .+...+..+...+...|++++|...+.+....+ +.+...+..+...+
T Consensus       170 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  247 (388)
T d1w3ba_         170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY  247 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHH
Confidence            3444444555555555555555555544321 133455555555556666666666666555532 23344555555566


Q ss_pred             hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038112          479 CQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKAL  558 (625)
Q Consensus       479 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  558 (625)
                      ...|++++|...++++++.. +.+..++..++.++...|++++|...++..... .+.+...+..++.++...|++++|+
T Consensus       248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHH
Confidence            66666666666666665542 234555666666666666666666666666554 2445556666666666666666666


Q ss_pred             HHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038112          559 EIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPT-TITWHILVRAVMNNGA  623 (625)
Q Consensus       559 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  623 (625)
                      ..|+++++  +.| +..++..++.+|.+.|++++|.+.++++++  +.|+ ...|..+..++.+.||
T Consensus       326 ~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         326 RLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            66666665  445 345556666666666666666666666664  3343 4456666666665554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-16  Score=146.01  Aligned_cols=271  Identities=10%  Similarity=0.036  Sum_probs=172.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      ..+..+..+|++++|+..|+.+++.+  |.++.+|..++.++...|++++|...+.++++..| .+...+..++.+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence            46788899999999999999999988  99999999999999999999999999999999874 5889999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGV  166 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  166 (625)
                      |++++|.+.++++....+..............             ..+.......+..+...+.+.+|...|.++.+..+
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC----------------------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhh-------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            99999999999987766654443111000000             00000111111222334445556666655554422


Q ss_pred             C-CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHH
Q 038112          167 E-TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYC  245 (625)
Q Consensus       167 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  245 (625)
                      . .+..++..++.++...|++++|+..|+......  +.+..+|..++.++...|++++|++.|++..+..+ .+..++.
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~  244 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRY  244 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHH
Confidence            1 233445555666666666666666666665542  33445566666666666666666666666655432 2455566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----------CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 038112          246 SFIHGLCKAGNVEGAERVYREMVES----------GIFVDAVTYNAMIDGFCRAGKIKECF  296 (625)
Q Consensus       246 ~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~  296 (625)
                      .++.+|...|++++|+..|++.++.          ........+..+-.++...++.+.+.
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666666666666666665541          11223444555555555556555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.5e-15  Score=135.54  Aligned_cols=226  Identities=13%  Similarity=0.073  Sum_probs=169.2

Q ss_pred             hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH
Q 038112          111 CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK  190 (625)
Q Consensus       111 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  190 (625)
                      .+.|++++|+..|+++++.+ |.+..+|..+..++...|+++.|...|.++.+..+ -+...+..++.++...|++++|.
T Consensus        30 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          30 LQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccccc
Confidence            34455555555555555554 45677788888888888888888888888877643 36677777888888888888888


Q ss_pred             HHHHHHHhCCCCCCCcc-------------hHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCC
Q 038112          191 EIWERLVMETSVYPNVV-------------TYNVMINGLCKCGRFDECLEMWDRMKKNER-EKDSFTYCSFIHGLCKAGN  256 (625)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  256 (625)
                      +.++.+....+......             .....+..+...+.+.++.+.+.+.....+ ..+...+..+...+...|+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  187 (323)
T d1fcha_         108 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE  187 (323)
T ss_dssp             HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred             cchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            88888776431111110             111122334455677888888888776543 2356677888889999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 038112          257 VEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELL  336 (625)
Q Consensus       257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  336 (625)
                      +++|+..|++.+...+. +...+..++.++...|++++|++.|+.+.+..|.+..+|..++.+|.+.|++++|+..|++.
T Consensus       188 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  266 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA  266 (323)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             Hhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999887543 67888999999999999999999999999988889999999999999999999999999998


Q ss_pred             HHc
Q 038112          337 REK  339 (625)
Q Consensus       337 ~~~  339 (625)
                      ++.
T Consensus       267 l~l  269 (323)
T d1fcha_         267 LNM  269 (323)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-12  Score=116.80  Aligned_cols=210  Identities=10%  Similarity=-0.006  Sum_probs=137.6

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPK-LVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      .++.++.+++++++|+..++.+++.+  |.+..+|...+.++...| ++++|...++.+++.+| .+..++..++.++.+
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~  124 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEW  124 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHh
Confidence            56677778888888888888888877  888888888888777765 47888888888888864 477888888888888


Q ss_pred             cCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           86 NSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      .|++++|+..++++.+..|                            .+..+|..+...+...|++++|+..++++++.+
T Consensus       125 l~~~~eAl~~~~kal~~dp----------------------------~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         125 LRDPSQELEFIADILNQDA----------------------------KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             HTCCTTHHHHHHHHHHHCT----------------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred             hccHHHHHHHHhhhhhhhh----------------------------cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence            8888888888877755433                            456666666666666777777777777776664


Q ss_pred             CCCCchhhHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 038112          166 VETNVVCYNILIDGFFKKGD------YMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREK  239 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  239 (625)
                      +. +...|+.+..++...+.      +++|++.+..+.+..  |.+...|+.+...+. ....+++.+.++...+..+.+
T Consensus       177 p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         177 VR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC
T ss_pred             Cc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCc
Confidence            33 55566666555554443      456666666666642  345555665554433 333566666666555433222


Q ss_pred             -ChhhHHHHHHHH
Q 038112          240 -DSFTYCSFIHGL  251 (625)
Q Consensus       240 -~~~~~~~l~~~~  251 (625)
                       +...+..++..|
T Consensus       253 ~~~~~~~~l~~~y  265 (315)
T d2h6fa1         253 SSPYLIAFLVDIY  265 (315)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence             233344444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.1e-10  Score=108.81  Aligned_cols=275  Identities=14%  Similarity=0.021  Sum_probs=178.1

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCC-----HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCC-C----HHHHH
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHS-----PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYC-P----EDVAL   77 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~   77 (625)
                      .+.++..+|++++|+..|+.++...  |.+     ..++..++.++...|++++|...|+.++...+.. +    ...+.
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            4567778888888888888877765  333     2356667777888888888888888877643211 1    12344


Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHH
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAV  157 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  157 (625)
                      .++..+...|++..|...+......                    ...............+..+...+...|+++.+...
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~--------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~  155 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQL--------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS  155 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHH
Confidence            5666677777777777777665331                    11111111111223455666778889999999999


Q ss_pred             HHHHHhCCCC----CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-----cchHHHHHHHHHhcCChhhHHHH
Q 038112          158 FDEMFERGVE----TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-----VVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       158 ~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      +.........    .....+......+...+++..+...+............     ...+..+...+...|++++|...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  235 (366)
T d1hz4a_         156 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW  235 (366)
T ss_dssp             HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9888765322    12234555666777888888888877765543211111     22355666778888999999998


Q ss_pred             HHHHHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038112          229 WDRMKKNEREKD---SFTYCSFIHGLCKAGNVEGAERVYREMVES----GIFVD-AVTYNAMIDGFCRAGKIKECFELWE  300 (625)
Q Consensus       229 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~  300 (625)
                      +++........+   ...+..+...+...|++++|...++.++..    +..|+ ...+..+..+|...|++++|.+.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         236 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888765443222   234556778888899999999888887632    33332 4566777888888888888888888


Q ss_pred             HHHh
Q 038112          301 VMGR  304 (625)
Q Consensus       301 ~~~~  304 (625)
                      +...
T Consensus       316 ~Al~  319 (366)
T d1hz4a_         316 DALK  319 (366)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.4e-10  Score=105.24  Aligned_cols=301  Identities=11%  Similarity=0.009  Sum_probs=190.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHH
Q 038112          283 IDGFCRAGKIKECFELWEVMGRKGCLN-----VVSYNILIRGLLENGKVDEAISIWELLREKNCN-AD----STTHGVLI  352 (625)
Q Consensus       283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~  352 (625)
                      ...+...|++++|++++++.....|.+     ..++..+..++...|++++|+..++........ ++    ...+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            444555666666666666655544432     234555666666666777776666665543111 01    22344455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--
Q 038112          353 NGLCKNGYLNKAIQILNEVEEGGEGRLADAASLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCS--  430 (625)
Q Consensus       353 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--  430 (625)
                      ..+...|++..+...+.....           +...............+..+...+...|+++.+...+.........  
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~  167 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQ-----------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  167 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------HhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence            667777888888877764332           1111111111222345566778889999999999999988764221  


Q ss_pred             --CChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC--CCCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--
Q 038112          431 --PTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG--WKPD----MITYSLLINGLCQSKKIDMALKLCCQFLQKGFT--  500 (625)
Q Consensus       431 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--  500 (625)
                        .....+......+...+++..+...+.+.....  ....    ...+......+...|+++.|...+++.......  
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  247 (366)
T d1hz4a_         168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN  247 (366)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc
Confidence              223345556667778899999998887765421  1111    234556667788899999999999988764322  


Q ss_pred             -CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCC
Q 038112          501 -PDVTMYNILIHGLCSAGKVEDALQLYSNMKKR----NCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEE----RLR  570 (625)
Q Consensus       501 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~  570 (625)
                       .....+..++.++...|++++|...++++...    +..|+ ..++..++.+|...|++++|.+.++++++.    |..
T Consensus       248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~  327 (366)
T d1hz4a_         248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI  327 (366)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcH
Confidence             22456677889999999999999999988642    33333 567888999999999999999999998762    211


Q ss_pred             C----CHHHHHHHHHHHhhcCChHHHHH
Q 038112          571 P----DIISYNITLKGLCSCSRMSDAFE  594 (625)
Q Consensus       571 p----~~~~~~~l~~~~~~~g~~~~A~~  594 (625)
                      .    ....+..++..+...++.+++.+
T Consensus       328 ~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         328 SHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            1    12234444555555666655543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.4e-11  Score=106.02  Aligned_cols=215  Identities=9%  Similarity=-0.023  Sum_probs=173.5

Q ss_pred             HhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCCcchHHHHH
Q 038112          135 VYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKG-DYMRAKEIWERLVMETSVYPNVVTYNVMI  213 (625)
Q Consensus       135 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  213 (625)
                      ..+++.+...+.+.+.+++|+.+++++++.++. +...|+....++...| ++++|+..++.+.+..  +.+..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH--HhhhhHHHHHh
Confidence            445677777788899999999999999998543 6778888888888876 5899999999998873  56778899999


Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 038112          214 NGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGK--  291 (625)
Q Consensus       214 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  291 (625)
                      .++.+.|++++|+..++++.+..+ .+...|..+...+...|++++|+..++++++.++. +...|..+..++.+.+.  
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~  197 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  197 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence            999999999999999999998764 47888999999999999999999999999987544 77788888777776655  


Q ss_pred             ----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHH
Q 038112          292 ----IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNAD-STTHGVLINGL  355 (625)
Q Consensus       292 ----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~  355 (625)
                          +++|++.+..+....|.+..+|+.+...+... ..+++.+.++...+..+.+. ...+..++..|
T Consensus       198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence                67899999999999999999999887776544 46778888888877644432 33444455544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=5.7e-12  Score=115.81  Aligned_cols=257  Identities=8%  Similarity=-0.041  Sum_probs=151.7

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHHHHH----------HccCCchHHHHHHHHhHHhhCCCcch-------h--hhcC
Q 038112           54 VVHVSRILELIEIQKCYCPEDVALSVIQAY----------GKNSMPDKALDVFQRMNEIFGCEAGI-------L--CRKR  114 (625)
Q Consensus        54 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~A~~~~~~~~~~~~~~~~~-------~--~~~~  114 (625)
                      .++|..+++.++..+|. +...|+.....+          ...|++++|+..++.+....|..+.+       +  ...+
T Consensus        45 ~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             cHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            35555555555555432 333433222221          22233455666666555544444433       1  1123


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHhHHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHH
Q 038112          115 QFEKAKRFLNSLWEKGLKPDVYSYG-TVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIW  193 (625)
Q Consensus       115 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  193 (625)
                      ++++|...+++++..+ +++...+. .....+...+.++.|+..++.+++.++. +...|..+..++...|++++|...+
T Consensus       124 ~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3555555555555554 34455443 3345555677788888888877777543 6677777777888888777766554


Q ss_pred             HHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038112          194 ERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIF  273 (625)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  273 (625)
                      .......   |.   .......+...+..+++...+.......+ ++...+..++..+...+++.+|...+.+.....+.
T Consensus       202 ~~~~~~~---~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  274 (334)
T d1dcea1         202 RLPENVL---LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENKW  274 (334)
T ss_dssp             SSCHHHH---HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHhHHhH---HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence            4433321   11   12233344556667777777777665543 34555556666667777778888877777665322


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          274 VDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                       +..++..++.++...|++++|++.++.+...+|.....|..+...+.
T Consensus       275 -~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         275 -CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             -HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence             45666777777778888888888888888777777777776665554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=9.9e-11  Score=105.67  Aligned_cols=220  Identities=10%  Similarity=0.037  Sum_probs=112.3

Q ss_pred             hhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCC--------------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112           18 PHTALALFDSATREPGYAHSPHLFHHILRRLIDP--------------KLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus        18 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      .+++..+|++++...  |.++..|..-+.-+...              +..++|..+|+++++..+|.+..++...+..+
T Consensus        32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~  109 (308)
T d2onda1          32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            345666777777655  66677766655433221              22345556666666544444555555555555


Q ss_pred             HccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038112           84 GKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFE  163 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  163 (625)
                      .+.|+++.|+.+|+++..                           .........|...+..+.+.|+.+.|..+|+++.+
T Consensus       110 ~~~~~~~~a~~i~~~~l~---------------------------~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~  162 (308)
T d2onda1         110 ESRMKYEKVHSIYNRLLA---------------------------IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  162 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHT---------------------------SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred             HhcccHHHHHHHHHHHHH---------------------------HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            555555555555555422                           21111233455555555666666666666666655


Q ss_pred             CCCCCCchhhHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CC--
Q 038112          164 RGVETNVVCYNILIDG-FFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNER-EK--  239 (625)
Q Consensus       164 ~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--  239 (625)
                      .++ .+...|...+.. +...|+.+.|..+|+.+.+.  .+.+...|...+..+.+.|+++.|..+|++.....+ .|  
T Consensus       163 ~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~  239 (308)
T d2onda1         163 DAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK  239 (308)
T ss_dssp             STT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred             hCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence            532 233333333332 22345556666666655554  233444555555555555666666555555544321 11  


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038112          240 DSFTYCSFIHGLCKAGNVEGAERVYREMVE  269 (625)
Q Consensus       240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  269 (625)
                      ....|...+..-...|+.+.+..+++++.+
T Consensus       240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         240 SGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            122344444444455555555555554433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=3.3e-12  Score=117.40  Aligned_cols=267  Identities=9%  Similarity=-0.013  Sum_probs=200.2

Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcch-----------------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI-----------------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGT  140 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  140 (625)
                      .++....+.+..++|+++++++....|....+                 +...|++++|+.+++.++..+ |.+...|..
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~  112 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH  112 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            34444444555689999999998888887654                 334556889999999999876 667778888


Q ss_pred             HHHHHHhcC--ChhhHHHHHHHHHhCCCCCCchhh-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHH
Q 038112          141 VINGLVKSG--DLLGALAVFDEMFERGVETNVVCY-NILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLC  217 (625)
Q Consensus       141 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  217 (625)
                      +..++...+  ++++|+..++++.+..++ +...+ ......+...+.++.|+..++.+.+.+  +.+..+|+.+..++.
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence            877777665  478999999999987543 44444 455677888999999999999998874  567788999999999


Q ss_pred             hcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 038112          218 KCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFE  297 (625)
Q Consensus       218 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  297 (625)
                      +.|++++|...++......  |  . .......+...+..+++...+.......+ ++...+..++..+...+++++|..
T Consensus       190 ~~~~~~~A~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         190 QLHPQPDSGPQGRLPENVL--L--K-ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HHSCCCCSSSCCSSCHHHH--H--H-HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHhHHhH--H--H-HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHH
Confidence            9999998876665444321  1  1 12233445566777788888888877643 345556667778888899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038112          298 LWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLINGL  355 (625)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  355 (625)
                      .+.+.....|.+..++..++.++...|++++|++.++++.+.++. +...|..+...+
T Consensus       264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~  320 (334)
T d1dcea1         264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence            999999998889999999999999999999999999999998431 334444444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4e-10  Score=101.61  Aligned_cols=186  Identities=11%  Similarity=0.050  Sum_probs=118.6

Q ss_pred             ChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC-cchHHHHHHHHHhcCChhhHHHH
Q 038112          150 DLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPN-VVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      ..++|..+|++.++...+.+...|...+..+...|+.++|..+|+.+.+..  +.+ ...|...+....+.|+++.|.++
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~--~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            345677777777765444455566667777777777777777777776642  222 23567777777777777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038112          229 WDRMKKNEREKDSFTYCSFIHG-LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGC  307 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  307 (625)
                      |+++.+..+. +...|...+.. +...|+.+.|..+|+.++... +.+...+...+..+...|+++.|..+|++.....+
T Consensus       157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            7777665432 33344333332 334567777777777777653 22566677777777777777777777777666544


Q ss_pred             C----cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 038112          308 L----NVVSYNILIRGLLENGKVDEAISIWELLREK  339 (625)
Q Consensus       308 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  339 (625)
                      .    ....|...+..-...|+.+.+..+++++.+.
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2    2345666666666667777777777666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=7.3e-11  Score=103.94  Aligned_cols=153  Identities=10%  Similarity=-0.100  Sum_probs=101.9

Q ss_pred             cCChhHHHHHHHhhccCCCC--CCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHH
Q 038112           15 EKNPHTALALFDSATREPGY--AHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKA   92 (625)
Q Consensus        15 ~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A   92 (625)
                      ..+.+.|+..++.++.....  +....++..++.++.+.|++++|...|+++++.+| .++.++..++.++.+.|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHh
Confidence            34456677777777654421  23345777888888999999999999999998874 4788888889988888888888


Q ss_pred             HHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchh
Q 038112           93 LDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVC  172 (625)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  172 (625)
                      +..|+++....|                            .+..++..+..++...|+++.|...|+..++..+ .+...
T Consensus        91 ~~~~~~al~~~p----------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~  141 (259)
T d1xnfa_          91 YEAFDSVLELDP----------------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFR  141 (259)
T ss_dssp             HHHHHHHHHHCT----------------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             hhhhhHHHHHHh----------------------------hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHH
Confidence            888888865433                            2344566666667777777777777777766532 23334


Q ss_pred             hHHHHHHHHhcCChhHHHHHHHHHH
Q 038112          173 YNILIDGFFKKGDYMRAKEIWERLV  197 (625)
Q Consensus       173 ~~~l~~~~~~~g~~~~a~~~~~~~~  197 (625)
                      ...+..++...+..+.+..+.....
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_         142 SLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            3344444444454444444444433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.9e-10  Score=101.24  Aligned_cols=221  Identities=12%  Similarity=-0.051  Sum_probs=150.7

Q ss_pred             CChHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHH
Q 038112          114 RQFEKAKRFLNSLWEKGLKP---DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAK  190 (625)
Q Consensus       114 ~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  190 (625)
                      .+.+.++..+++++......   ...+|..+..++.+.|++++|+..|++.++..+ .++.+|..++.++...|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhh
Confidence            34556666677776543111   234677778889999999999999999998753 37888999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038112          191 EIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVES  270 (625)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  270 (625)
                      ..|+++.+..  +.+..++..++.++...|++++|...|++..+..+ .+......+...+...+..+....+.......
T Consensus        92 ~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          92 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            9999998864  45566888899999999999999999999887654 34444444555555666655555555555554


Q ss_pred             CCCcCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112          271 GIFVDAVTYNAMIDGFCRAGK----IKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC  341 (625)
Q Consensus       271 ~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  341 (625)
                      ...+  ..+. ++..+.....    .+.+...+.......+....+|..++..+...|++++|...|++.+...+
T Consensus       169 ~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         169 DKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             CCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             chhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            2221  1111 2222222211    22333322222222223556788889999999999999999999887743

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.7e-10  Score=82.95  Aligned_cols=100  Identities=10%  Similarity=-0.148  Sum_probs=90.5

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      .-+..+...|++++|+..|+.+++.+  |.++.+|..++.++...|++++|+..+..+++.+| .+...+..++.++...
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHc
Confidence            45788889999999999999999988  99999999999999999999999999999999975 5889999999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      |++++|+..|+++.+..|..+.+
T Consensus        85 ~~~~~A~~~~~~a~~~~p~~~~~  107 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEANNPQL  107 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999997766665544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.5e-08  Score=81.83  Aligned_cols=155  Identities=10%  Similarity=-0.083  Sum_probs=115.5

Q ss_pred             HHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccC
Q 038112            8 LLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNS   87 (625)
Q Consensus         8 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   87 (625)
                      -+..+..+|+++.|+..|..+.     ++++.+|..++.++...|++++|++.|+++++.+| .....+..++.++.+.|
T Consensus        11 ~g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          11 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhc
Confidence            3677889999999999998742     56788999999999999999999999999999985 58889999999999999


Q ss_pred             CchHHHHHHHHhHHhhCCCcch-hhhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 038112           88 MPDKALDVFQRMNEIFGCEAGI-LCRKRQFEKAKRFLNSLWEKGLKP-DVYSYGTVINGLVKSGDLLGALAVFDEMFERG  165 (625)
Q Consensus        88 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  165 (625)
                      ++++|+..|++.....+..... +...|.              ..+. ...++..+..++.+.|++++|.+.++.+.+..
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~--------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGL--------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTB--------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhh--------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999999999987644433332 111110              0011 12345566677888899999999988888775


Q ss_pred             CCCCchhhHHHHHHHHh
Q 038112          166 VETNVVCYNILIDGFFK  182 (625)
Q Consensus       166 ~~~~~~~~~~l~~~~~~  182 (625)
                      +.++.......+..+.+
T Consensus       151 ~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_         151 SEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             CSGGGGHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHh
Confidence            55544444444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1e-08  Score=81.61  Aligned_cols=100  Identities=6%  Similarity=-0.134  Sum_probs=86.5

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKN   86 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   86 (625)
                      ..++.+...|++++|+..|+.+++.+  |.++..|..++.++...|++++|...|+.+++.+| .+..++..++.++...
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHc
Confidence            44677888999999999999999888  88999999999999999999999999999999874 4778899999999999


Q ss_pred             CCchHHHHHHHHhHHhhCCCcch
Q 038112           87 SMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        87 ~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      |++++|...|+++....|..+.+
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999987766655544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.88  E-value=5.3e-09  Score=77.12  Aligned_cols=93  Identities=8%  Similarity=-0.054  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 038112            4 SAKRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAY   83 (625)
Q Consensus         4 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   83 (625)
                      .+-.++..+..+|++++|+..|+.++...  |.++.+|..++.++.+.|++++|+..|+++++.+| .+..++..++.+|
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y   94 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH   94 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHH
Confidence            34567889999999999999999999988  89999999999999999999999999999999974 5889999999999


Q ss_pred             HccCCchHHHHHHHHh
Q 038112           84 GKNSMPDKALDVFQRM   99 (625)
Q Consensus        84 ~~~~~~~~A~~~~~~~   99 (625)
                      ...|++++|.+.+++.
T Consensus        95 ~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          95 TNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            9999999999999886

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=6.3e-08  Score=85.92  Aligned_cols=156  Identities=9%  Similarity=-0.009  Sum_probs=95.8

Q ss_pred             HHHHhhCCCChhHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch---------
Q 038112           44 ILRRLIDPKLVVHVSRILELIEIQKC-----YCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI---------  109 (625)
Q Consensus        44 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------  109 (625)
                      .+..|...|++++|.+.|.++.....     +.....+..++.+|.+.|++++|...+++.....+.....         
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            35566677788888888887776421     1122466777788888888888888888776543333221         


Q ss_pred             ----h-hhcCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCch------hh
Q 038112          110 ----L-CRKRQFEKAKRFLNSLWEK----GLKP-DVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETNVV------CY  173 (625)
Q Consensus       110 ----~-~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~  173 (625)
                          + ...|++++|+..|+++.+.    +.++ ...++..+...+...|++++|+..|+++..........      .+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence                2 2347777777777766432    1111 12346667777778888888888888777653221111      22


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038112          174 NILIDGFFKKGDYMRAKEIWERLVME  199 (625)
Q Consensus       174 ~~l~~~~~~~g~~~~a~~~~~~~~~~  199 (625)
                      ...+.++...|+++.|...+++..+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            34455566677777777777776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-07  Score=77.20  Aligned_cols=123  Identities=9%  Similarity=-0.046  Sum_probs=62.0

Q ss_pred             HHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 038112          215 GLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKE  294 (625)
Q Consensus       215 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  294 (625)
                      .+...|+++.|++.|+++.    ++++.+|..+..+|...|++++|++.|++.++..+. +...|..+..+|.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            3444455555555544332    334444444555555555555555555555444322 34444445555555555555


Q ss_pred             HHHHHHHHHhcCCC----------------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 038112          295 CFELWEVMGRKGCL----------------NVVSYNILIRGLLENGKVDEAISIWELLREKNCN  342 (625)
Q Consensus       295 a~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  342 (625)
                      |++.|++.....+.                ...++..+..++...|++++|.+.+.......+.
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            55555444322111                1344556666677777777777777666665443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.5e-07  Score=83.35  Aligned_cols=198  Identities=10%  Similarity=-0.034  Sum_probs=140.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHhh
Q 038112          401 CNSLMNGFIQASKLENAIFLFKEMSRK----GCSP-TVVSYNTLINGLCKVERFGEAYSFVKEMLEK----GW-KPDMIT  470 (625)
Q Consensus       401 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~  470 (625)
                      |......|...+++++|...|.++.+.    +..+ -..+|..+..+|.+.|++++|...+++..+.    +. .....+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            344567788999999999999988753    1111 2347888899999999999999999987653    11 111345


Q ss_pred             HHHHHHHHh-ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-----C-H
Q 038112          471 YSLLINGLC-QSKKIDMALKLCCQFLQK----GFTP-DVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVP-----N-L  538 (625)
Q Consensus       471 ~~~l~~~~~-~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~  538 (625)
                      +..+...|. ..|++++|.+.+++..+.    +.++ ...++..++.++...|++++|+.+|+++.......     + .
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~  199 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK  199 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence            666666664 469999999999987652    2111 14567888999999999999999999988752111     1 1


Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhh--cCChHHHHHHHHHHH
Q 038112          539 VTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD------IISYNITLKGLCS--CSRMSDAFEFLNDAL  600 (625)
Q Consensus       539 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~  600 (625)
                      ..+...+.++...|+++.|...++++.+  +.|+      ......++.++..  .+.+++|+..|+++.
T Consensus       200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~--~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            3345667778889999999999999988  5552      2344556666654  356888888887654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-07  Score=69.76  Aligned_cols=93  Identities=15%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 038112          247 FIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKV  326 (625)
Q Consensus       247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  326 (625)
                      -...+...|++++|+..|+++++..+. +...|..+..+|...|++++|+..+.......|.++.+|..++.++...|++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            345566677777777777777666433 5666777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcC
Q 038112          327 DEAISIWELLREKN  340 (625)
Q Consensus       327 ~~a~~~~~~~~~~~  340 (625)
                      ++|+..|++..+..
T Consensus        88 ~~A~~~~~~a~~~~  101 (117)
T d1elwa_          88 EEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            77777777777653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=6.9e-09  Score=77.30  Aligned_cols=102  Identities=13%  Similarity=-0.010  Sum_probs=87.3

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHhcCCCC-HHHHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLV---VHVSRILELIEIQKCYCP-EDVALSVIQ   81 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~   81 (625)
                      ..|++.+...+++++|...|+.++..+  |.++.++..++.++.+.++.   .+|+++|+.++..++.++ ..++..++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            467888899999999999999999988  99999999999999876554   569999999998764332 347889999


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      +|.+.|++++|+..|+++++..|.+..+
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            9999999999999999998887766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.76  E-value=1.5e-05  Score=69.09  Aligned_cols=112  Identities=15%  Similarity=0.016  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCH
Q 038112          448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQ----SKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKV  519 (625)
Q Consensus       448 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~  519 (625)
                      ....+...+......   .+...+..+...+..    ..+...+...++...+.|   +......++..|..    ..++
T Consensus       125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~  198 (265)
T d1ouva_         125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF  198 (265)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred             hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence            344445555544442   233444444444432    334455555555555533   44444445544443    3456


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112          520 EDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER  568 (625)
Q Consensus       520 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  568 (625)
                      ++|..+|.+..+.|   ++..+..|+..|..    ..+.++|.++|+++.+.|
T Consensus       199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            66666666666654   44455556665554    235666666666666544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.75  E-value=1.4e-05  Score=69.34  Aligned_cols=60  Identities=12%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc----cCCchHHHHHHHHh
Q 038112           37 SPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK----NSMPDKALDVFQRM   99 (625)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~   99 (625)
                      ||.++..++..+...+++++|.+.|+++.+.+   +......|+.+|..    ..++..|..++...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            46777788887888888888888888887765   56677777777754    33455555554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-07  Score=74.45  Aligned_cols=120  Identities=12%  Similarity=0.068  Sum_probs=93.4

Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 038112          472 SLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKT  551 (625)
Q Consensus       472 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  551 (625)
                      ...+..|.+.|++++|...|+++++.+ +.+...|..++.+|...|++++|...|+++++.+ +.+...|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence            344567889999999999999999875 4578899999999999999999999999999863 45678999999999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HhhcCChHHHHHH
Q 038112          552 GDCDKALEIWNHILEERLRPD-IISYNITLKG--LCSCSRMSDAFEF  595 (625)
Q Consensus       552 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~  595 (625)
                      |++++|...+++++.  +.|+ ...+..+..+  ....+.+++|...
T Consensus        92 g~~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999  6674 4444444333  2333445555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=8.7e-08  Score=79.88  Aligned_cols=102  Identities=13%  Similarity=0.009  Sum_probs=89.6

Q ss_pred             CCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038112          466 PDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLM  545 (625)
Q Consensus       466 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  545 (625)
                      |+...+...+..+.+.|++++|+..|.++++.. +.+...|..++.+|.+.|++++|+..|+++++.. +.+..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            677888888999999999999999999998864 4578899999999999999999999999999852 44588899999


Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCC
Q 038112          546 DGLFKTGDCDKALEIWNHILEERLRP  571 (625)
Q Consensus       546 ~~~~~~g~~~~A~~~~~~~~~~~~~p  571 (625)
                      .+|...|++++|+..|+++++  +.|
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~--l~p  103 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS--LAK  103 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH--HHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH--hCc
Confidence            999999999999999999988  455

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=2.4e-08  Score=83.38  Aligned_cols=96  Identities=11%  Similarity=-0.069  Sum_probs=87.4

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGK   85 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~   85 (625)
                      ...+..+...|++++|+..|..++..+  |.++.+|..++.+|.+.|++++|+..|+.+++.+| .+...+..++.+|..
T Consensus         8 ~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           8 KEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            355789999999999999999999988  99999999999999999999999999999999874 588899999999999


Q ss_pred             cCCchHHHHHHHHhHHhhC
Q 038112           86 NSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        86 ~~~~~~A~~~~~~~~~~~~  104 (625)
                      .|++++|+..|+++....|
T Consensus        85 l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            9999999999998876444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.5e-07  Score=69.78  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=61.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 038112          473 LLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGK---VEDALQLYSNMKKRNCVPN-LVTYNTLMDGL  548 (625)
Q Consensus       473 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  548 (625)
                      .++..+...+++++|.+.|++.+..+ +.++.++..++.++.+.++   +++|+.+++++...+..|+ ..++..++.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45556666667777777777777654 4456666667777665443   3457777777665432222 23566677777


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCH
Q 038112          549 FKTGDCDKALEIWNHILEERLRPDI  573 (625)
Q Consensus       549 ~~~g~~~~A~~~~~~~~~~~~~p~~  573 (625)
                      ...|++++|++.|+++++  +.|+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~--~~P~~  105 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQ--TEPQN  105 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHhhhHHHHHHHHHHHH--hCcCC
Confidence            777777777777777777  56644

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.56  E-value=3.1e-07  Score=67.35  Aligned_cols=90  Identities=7%  Similarity=-0.067  Sum_probs=57.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 038112          246 SFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGK  325 (625)
Q Consensus       246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  325 (625)
                      .+...+.+.|++++|+..|++.+...+. ++..+..++.++.+.|++++|+..|+.+....|.+..+|..++.+|...|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            3455566666666666666666665432 566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHH
Q 038112          326 VDEAISIWELL  336 (625)
Q Consensus       326 ~~~a~~~~~~~  336 (625)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.3e-07  Score=71.43  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=75.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC------HHHHHHH
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP------EDVALSV   79 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l   79 (625)
                      ..+++.+..+|+|++|+..|..+++.+  |.++.++..++.++.+.|++++|++.++.+++..+...      ..++..+
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            568888999999999999999999887  88899999999999999999999999999888654311      1355566


Q ss_pred             HHHHHccCCchHHHHHHHHhHH
Q 038112           80 IQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        80 ~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      +..+...+++++|+..|++...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            7777777777777777777644

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=0.00033  Score=61.45  Aligned_cols=136  Identities=13%  Similarity=0.129  Sum_probs=84.7

Q ss_pred             CCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHH
Q 038112          168 TNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSF  247 (625)
Q Consensus       168 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  247 (625)
                      |+..-...++..|.+.|.++.|..+|..+          .-|..++..+.+.++++.|.+.+.+.      .+..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence            45555566777788888888888888753          24667777888888888888877654      256678778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 038112          248 IHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENG  324 (625)
Q Consensus       248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  324 (625)
                      ...+.......-+     .+.......++.....++..|...|.+++...+++........+...++.++..|++.+
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            8887777665443     22222333456666778888888888888888888776655567777888888777754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=9.6e-07  Score=70.48  Aligned_cols=102  Identities=10%  Similarity=-0.088  Sum_probs=82.3

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCC-------------HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHS-------------PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPE   73 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   73 (625)
                      ..+..+..+|++++|+..|..++...+....             ..++..++.+|.+.|++++|+..++.+++.+| .+.
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~   96 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNE   96 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-cch
Confidence            4567788899999999999998865421111             24456678888999999999999999999974 588


Q ss_pred             HHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           74 DVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        74 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      ..+..++.+|...|++++|+..|+++.+..|.++.+
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            899999999999999999999999998776665554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.46  E-value=9.7e-08  Score=73.88  Aligned_cols=127  Identities=11%  Similarity=0.086  Sum_probs=86.8

Q ss_pred             HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCC----------CChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 038112           12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDP----------KLVVHVSRILELIEIQKCYCPEDVALSVIQ   81 (625)
Q Consensus        12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   81 (625)
                      +.+.+.+++|+..|+.++..+  |.++.++..++.++...          +.+++|+..|+.+++.+| .+...+..++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHH
Confidence            445667999999999999998  99999999999988743          456789999999999975 58889999999


Q ss_pred             HHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHH
Q 038112           82 AYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEM  161 (625)
Q Consensus        82 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  161 (625)
                      +|...|++....                ....+.+++|...|+++++..  |+...+...+..+      ..|.+++.++
T Consensus        84 ~y~~~g~~~~~~----------------~~~~~~~~~A~~~~~kal~l~--P~~~~~~~~L~~~------~ka~~~~~e~  139 (145)
T d1zu2a1          84 AYTSFAFLTPDE----------------TEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMT------AKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH------HTHHHHHHHH
T ss_pred             HHHHcccchhhH----------------HHHHHhHHHhhhhhhcccccC--CCHHHHHHHHHHH------HHHHHHHHHH
Confidence            987766432111                111223556666777776654  3333333322222      3455666666


Q ss_pred             HhCC
Q 038112          162 FERG  165 (625)
Q Consensus       162 ~~~~  165 (625)
                      .+.|
T Consensus       140 ~k~~  143 (145)
T d1zu2a1         140 YKQG  143 (145)
T ss_dssp             HHSS
T ss_pred             HHHh
Confidence            5554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.3e-06  Score=65.86  Aligned_cols=92  Identities=20%  Similarity=0.281  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--------HHHHHH
Q 038112          507 NILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD--------IISYNI  578 (625)
Q Consensus       507 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~  578 (625)
                      ..++..+...|++++|+..|++.++.+ +.+...+..++.+|...|++++|+..++++++  +.|+        ..+|..
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE--VGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH
Confidence            344555556666666666666665542 33455555666666666666666666666555  2221        123444


Q ss_pred             HHHHHhhcCChHHHHHHHHHHHH
Q 038112          579 TLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       579 l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      +...+...+++++|++++++.+.
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            45555555666666666665553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.1e-08  Score=96.41  Aligned_cols=218  Identities=9%  Similarity=-0.086  Sum_probs=102.4

Q ss_pred             HHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHh
Q 038112           20 TALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRM   99 (625)
Q Consensus        20 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   99 (625)
                      +|.++|+.|++..  |..+.++..++.++...|++.+|   |++++..++. ...... +-..+. ...+..+++.++..
T Consensus         4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~-~e~~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKK-VEQDLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHT-HHHHHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHh-HHHHHH-HHHHHHHHHHHHHh
Confidence            6788888888766  66667777777777777777765   7777766421 111111 111111 11234455555544


Q ss_pred             HHhhCCC--cch--------hhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 038112          100 NEIFGCE--AGI--------LCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFERGVETN  169 (625)
Q Consensus       100 ~~~~~~~--~~~--------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  169 (625)
                      .+.....  ...        ....+.++.|+..++...+.. +++...+..+...+.+.|+.+.|...+.......   .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence            3211110  000        112333444444443333332 3344556666666666677666666665554431   1


Q ss_pred             chhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCChhhHHHHHH
Q 038112          170 VVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWDRMKKNEREKDSFTYCSFIH  249 (625)
Q Consensus       170 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  249 (625)
                      ..++..++..+...|++++|+..|.+..+..  |.+...|+.++..+...|+..+|+..|.+.....+ |.+.++..|..
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~  228 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHH
Confidence            2455566666777777777777777766652  44555677777777777777777777776665543 45555665555


Q ss_pred             HHH
Q 038112          250 GLC  252 (625)
Q Consensus       250 ~~~  252 (625)
                      .+.
T Consensus       229 ~~~  231 (497)
T d1ya0a1         229 ALS  231 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-06  Score=82.55  Aligned_cols=167  Identities=9%  Similarity=-0.110  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHhCCCCCCchhhHHHH--HHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 038112          151 LLGALAVFDEMFERGVETNVVCYNILI--DGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEM  228 (625)
Q Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  228 (625)
                      +..+.+.++...+....++..-.....  ......+.++.++..+......  .+++...+..+...+.+.|+.++|...
T Consensus        65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~~~~~~~~~lg~~~~~~~~~~~A~~~  142 (497)
T d1ya0a1          65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DLPCRVKSSQLGIISNKQTHTSAIVKP  142 (497)
T ss_dssp             THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred             HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence            344566666665543333332222211  1222345566666555544433  244556677778888888888888877


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038112          229 WDRMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCL  308 (625)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  308 (625)
                      +.......   ...++..+...+...|++++|...|.+..+..+. +...++.++..+...|+..+|...|.+.....++
T Consensus       143 ~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         143 QSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            76655321   1245667788888889999999999988887543 6788888888888899999999999988888888


Q ss_pred             cHHHHHHHHHHHHhC
Q 038112          309 NVVSYNILIRGLLEN  323 (625)
Q Consensus       309 ~~~~~~~l~~~~~~~  323 (625)
                      .+.++..|...+.+.
T Consensus       219 ~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         219 FPAASTNLQKALSKA  233 (497)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh
Confidence            888888887776543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.7e-06  Score=65.81  Aligned_cols=78  Identities=6%  Similarity=-0.139  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 038112          243 TYCSFIHGLCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLL  321 (625)
Q Consensus       243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (625)
                      +|..+..+|.+.|++++|+..++..+...+. ++.++..++.+|...|++++|+..|+.+....|.+..+...+..+..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3555666666666666666666666665432 56666666666666666666666666666666666665555544443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.38  E-value=0.00061  Score=59.74  Aligned_cols=135  Identities=13%  Similarity=0.062  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh
Q 038112           72 PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDL  151 (625)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  151 (625)
                      +..-...++..|.+.|.++.|..+|..+ ..+......+.+.++++.|...+.+.      .+..+|..+...|.+....
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~-~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------------CTTTHHHHHHHT-TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhC-CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence            3334445666666777777777776655 22222222344555555555554433      2455677777777766554


Q ss_pred             hhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcC
Q 038112          152 LGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCG  220 (625)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  220 (625)
                      ..+     .+.......++.....++..|...|.+++...+++.....  ...+...++.++..|++.+
T Consensus        86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC
T ss_pred             HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC
Confidence            332     2222223335555566777777777777777777766543  2344555667777776643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.33  E-value=9.6e-06  Score=63.11  Aligned_cols=60  Identities=17%  Similarity=0.064  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          540 TYNTLMDGLFKTGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       540 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                      ++..++.+|.+.|++++|+..++++++  +.| +..+|..++.++...|++++|+..|++.++
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~--~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLK--IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccc--ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555666666666666666666665  444 445566666666666666666666666654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=1.2e-05  Score=62.61  Aligned_cols=73  Identities=16%  Similarity=0.013  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNI  578 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~  578 (625)
                      ..++..++.+|.+.|++++|+..+++++..+ |.+..+|..++.++...|++++|+..|+++++  +.|+. .+...
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~  140 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            3467789999999999999999999999863 55789999999999999999999999999999  78854 44333

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.30  E-value=3.1e-06  Score=67.31  Aligned_cols=102  Identities=9%  Similarity=-0.097  Sum_probs=75.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHhhccCCCC--CCC-----------HHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCC
Q 038112            6 KRLLNLLKAEKNPHTALALFDSATREPGY--AHS-----------PHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCP   72 (625)
Q Consensus         6 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~--~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~   72 (625)
                      ...+..+...|++.+|+..|..++.....  ..+           ...+..++.++.+.|++++|+..++.+++.+| .+
T Consensus        19 ~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~~   97 (168)
T d1kt1a1          19 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-AN   97 (168)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc-ch
Confidence            45678899999999999999988753211  111           13344567778888888888888888888864 57


Q ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcc
Q 038112           73 EDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAG  108 (625)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  108 (625)
                      ...+..++.++...|++++|+..|+++.+..|.++.
T Consensus        98 ~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          98 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            788888888888888888888888888665554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.24  E-value=4.3e-05  Score=60.46  Aligned_cols=94  Identities=7%  Similarity=-0.006  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 038112          504 TMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDI-ISYNITLKG  582 (625)
Q Consensus       504 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~  582 (625)
                      .+|..++.+|.+.|++++|+..++++++.+ +.+..+|..++.++...|++++|+..|+++++  +.|+. .+...+..+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            456678889999999999999999999863 66788999999999999999999999999998  77754 454444444


Q ss_pred             HhhcCCh-HHHHHHHHHHH
Q 038112          583 LCSCSRM-SDAFEFLNDAL  600 (625)
Q Consensus       583 ~~~~g~~-~~A~~~~~~~~  600 (625)
                      ..+.+.. +...+.+..|.
T Consensus       142 ~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHH
Confidence            4343333 23445555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=8.6e-06  Score=64.85  Aligned_cols=77  Identities=13%  Similarity=0.008  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 038112          503 VTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPD-IISYNITLK  581 (625)
Q Consensus       503 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~  581 (625)
                      ...+..++.++.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++  +.|+ ..+...+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~~  153 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            4456667777777888888888888877752 44577777788888888888888888888877  5663 344444433


Q ss_pred             H
Q 038112          582 G  582 (625)
Q Consensus       582 ~  582 (625)
                      +
T Consensus       154 ~  154 (169)
T d1ihga1         154 V  154 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.13  E-value=4.8e-05  Score=60.49  Aligned_cols=125  Identities=11%  Similarity=0.046  Sum_probs=79.9

Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038112          471 YSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK  550 (625)
Q Consensus       471 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  550 (625)
                      ...........|++++|.+.|.+.+.....+ ...      .+ ..+.+  +...-..+..    .....+..++.++..
T Consensus        14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l~------~~-~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~   79 (179)
T d2ff4a2          14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP-VLD------DL-RDFQF--VEPFATALVE----DKVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTG------GG-TTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-ccc------cC-cchHH--HHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            3444556778888888888888888742111 000      00 01111  1111111111    123456778888888


Q ss_pred             cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 038112          551 TGDCDKALEIWNHILEERLRP-DIISYNITLKGLCSCSRMSDAFEFLNDALC-----RGILPTTITW  611 (625)
Q Consensus       551 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  611 (625)
                      .|++++|+..++++++  +.| +...|..++.+|.+.|+.++|++.|+++.+     .|+.|...+-
T Consensus        80 ~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          80 CGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             TTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            8888888888888888  667 667888888888888888888888888743     4888887653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=3.2e-05  Score=61.38  Aligned_cols=78  Identities=9%  Similarity=-0.061  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038112          275 DAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNCNADSTTHGVLIN  353 (625)
Q Consensus       275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  353 (625)
                      ....+..+..++.+.|++++|+..+..+....|.++.+|..++.++...|++++|+..|++.++..+. +......+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~  153 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            34567778888999999999999999999999889999999999999999999999999999987543 4444444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.09  E-value=7.2e-06  Score=63.02  Aligned_cols=115  Identities=10%  Similarity=0.063  Sum_probs=74.4

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038112          480 QSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----------AGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLF  549 (625)
Q Consensus       480 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  549 (625)
                      +.+.+++|...++..++.. |.++.++..++.++..          .+.+++|+..|+++++.+ |.+..+|..++.+|.
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence            3344566666666666543 3355556555555543          234567888888887752 445777778887776


Q ss_pred             ccC-----------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 038112          550 KTG-----------DCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGI  604 (625)
Q Consensus       550 ~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  604 (625)
                      ..|           .+++|.+.|+++++  +.|+...+...+..+      .+|.+++.+..++|+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            654           36788899999998  888777666555443      456677777766654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=3.9e-05  Score=61.05  Aligned_cols=94  Identities=17%  Similarity=0.016  Sum_probs=77.4

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCCCCC--------------------HHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGYAHS--------------------PHLFHHILRRLIDPKLVVHVSRILELIEI   66 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   66 (625)
                      ..++.+..+|++++|+..|..++.....+..                    ..++..++.++...|++++|+..++.++.
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4567888999999999999999986422211                    14567788888899999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHH
Q 038112           67 QKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNE  101 (625)
Q Consensus        67 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  101 (625)
                      .+ |.+...+..++.+|.+.|++++|++.|+++..
T Consensus        96 ~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          96 EH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            87 45889999999999999999999999998743

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.9e-05  Score=55.32  Aligned_cols=62  Identities=6%  Similarity=-0.049  Sum_probs=28.5

Q ss_pred             HHHHHHHccCChhHHHHHHHhhccCCCC-C----CCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhc
Q 038112            7 RLLNLLKAEKNPHTALALFDSATREPGY-A----HSPHLFHHILRRLIDPKLVVHVSRILELIEIQK   68 (625)
Q Consensus         7 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   68 (625)
                      .++.++.++|+++.|+..|+.+++..+. +    ....++..++.++.+.|++++|...++++++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3445555555555555555555433210 0    012344444445555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.90  E-value=7.6e-06  Score=69.94  Aligned_cols=123  Identities=11%  Similarity=-0.115  Sum_probs=72.1

Q ss_pred             HHccCChhHHHHHHHhhccCCCCCCCHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchH
Q 038112           12 LKAEKNPHTALALFDSATREPGYAHSPHLFHHILRRLIDPKLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDK   91 (625)
Q Consensus        12 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   91 (625)
                      ...+|++++|+..|+.+++..  |.++..+..++..++..|++++|.+.|+.+.+..| .....+..+...+...+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHH
Confidence            445677777777777777776  77777777777777777777777777777777653 244444444444432222211


Q ss_pred             HHHHHHHhHHhhCCCcchhhhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 038112           92 ALDVFQRMNEIFGCEAGILCRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGDLLGALAVFDEMFER  164 (625)
Q Consensus        92 A~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  164 (625)
                      +.......                           ...+-+++...+......+.+.|+.++|...++++.+.
T Consensus        83 a~~~~~~~---------------------------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATA---------------------------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCE---------------------------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhh---------------------------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11110000                           00111223333444556677788888888888888776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.6e-05  Score=53.82  Aligned_cols=76  Identities=16%  Similarity=-0.065  Sum_probs=63.4

Q ss_pred             HHHHHHhhCCCChhHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcchhhhcCC
Q 038112           42 HHILRRLIDPKLVVHVSRILELIEIQKCY------CPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGILCRKRQ  115 (625)
Q Consensus        42 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  115 (625)
                      ..++..+.+.|++.+|+..|+++++..+.      ....++..++.++.+.|++++|+..++++++..|..+.++...+.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            35888999999999999999999986432      124678899999999999999999999999999999888555444


Q ss_pred             hH
Q 038112          116 FE  117 (625)
Q Consensus       116 ~~  117 (625)
                      ++
T Consensus        89 ~~   90 (95)
T d1tjca_          89 FE   90 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.79  E-value=2.7e-05  Score=66.40  Aligned_cols=122  Identities=13%  Similarity=0.006  Sum_probs=70.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 038112          251 LCKAGNVEGAERVYREMVESGIFVDAVTYNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAI  330 (625)
Q Consensus       251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  330 (625)
                      ..+.|++++|+..+++.++..+. +...+..++..++..|++++|.+.++...+..|.+...+..+...+...+..+++.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34567777777777777776433 66777777777777777777777777777776666666666655554433333322


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038112          331 SIWELLREKNCNADSTTHGVLINGLCKNGYLNKAIQILNEVEE  373 (625)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  373 (625)
                      .-.......+.+++..........+...|+.++|...++++.+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            2111101111111222233344556677777777777775443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.78  E-value=1.7e-05  Score=62.03  Aligned_cols=96  Identities=9%  Similarity=-0.110  Sum_probs=74.8

Q ss_pred             HHHHHccCChhHHHHHHHhhccCCCCCC----------CHHHHHHHHHHhhCCCChhHHHHHHHHHHHhcC---C--C--
Q 038112            9 LNLLKAEKNPHTALALFDSATREPGYAH----------SPHLFHHILRRLIDPKLVVHVSRILELIEIQKC---Y--C--   71 (625)
Q Consensus         9 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--~--   71 (625)
                      +.....+|++++|+..|+.++.....-+          ....|..++.++...|++++|.+.++.+++..+   .  +  
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            5677788999999999999987542111          135778899999999999999999999987431   1  1  


Q ss_pred             ---CHHHHHHHHHHHHccCCchHHHHHHHHhHHhhC
Q 038112           72 ---PEDVALSVIQAYGKNSMPDKALDVFQRMNEIFG  104 (625)
Q Consensus        72 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  104 (625)
                         ...++..++.+|...|++++|+..|++..+..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence               123567789999999999999999999866443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.76  E-value=7.9e-05  Score=58.02  Aligned_cols=97  Identities=19%  Similarity=0.144  Sum_probs=71.0

Q ss_pred             HHHHH--HHHHHcCCCHHHHHHHHHHHHhC--CCCC---------CHHHHHHHHHHHHccCChhHHHHHHHHHHHc----
Q 038112          505 MYNIL--IHGLCSAGKVEDALQLYSNMKKR--NCVP---------NLVTYNTLMDGLFKTGDCDKALEIWNHILEE----  567 (625)
Q Consensus       505 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  567 (625)
                      +|..+  +..+...|++++|+..|++.++.  ..+.         ....|+.++.+|...|++++|+..++++++.    
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  45566778888888888888763  1110         1357888999999999999999999988862    


Q ss_pred             -CCCCC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 038112          568 -RLRPD-----IISYNITLKGLCSCSRMSDAFEFLNDALC  601 (625)
Q Consensus       568 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  601 (625)
                       ...++     ...+..+..+|...|++++|++.|++.++
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             12222     12567778899999999999999999864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.35  E-value=0.0035  Score=46.62  Aligned_cols=81  Identities=16%  Similarity=-0.018  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCC
Q 038112          517 GKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEERLRPDIISYNITLKGLCS----CSR  588 (625)
Q Consensus       517 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  588 (625)
                      .+.++|.+++++..+.|   ++.....|+..|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34555555555555443   33444444444433    234555555555555533   33333444444443    234


Q ss_pred             hHHHHHHHHHHHHCC
Q 038112          589 MSDAFEFLNDALCRG  603 (625)
Q Consensus       589 ~~~A~~~~~~~~~~~  603 (625)
                      .++|.+++++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            555555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.0057  Score=45.40  Aligned_cols=110  Identities=10%  Similarity=-0.021  Sum_probs=69.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCHHHHH
Q 038112          448 RFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGFTPDVTMYNILIHGLCS----AGKVEDAL  523 (625)
Q Consensus       448 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  523 (625)
                      ++++|+.+|++..+.|..   .....+.  .....+.++|.+.+++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            455666666666655421   2222222  233456777778877777765   45555556666653    35678888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcC
Q 038112          524 QLYSNMKKRNCVPNLVTYNTLMDGLFK----TGDCDKALEIWNHILEER  568 (625)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  568 (625)
                      ++|++..+.|   ++.....|+..|..    ..+.++|..+|+++.+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            8888888765   45566667777665    457888888888887755

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.11  Score=47.91  Aligned_cols=170  Identities=6%  Similarity=-0.051  Sum_probs=85.2

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHH
Q 038112          411 ASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALKL  490 (625)
Q Consensus       411 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  490 (625)
                      .+..+.+...+......+  .+.......+......+++..+...+..+... ..........+..++...|+.+.|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~  341 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEI  341 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHH
Confidence            344555555555554432  22332233333344456666666666555322 111233334555666666666666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHH----HHHHHHHHHHccCChhHHHHHHHHH
Q 038112          491 CCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNC--VPNLV----TYNTLMDGLFKTGDCDKALEIWNHI  564 (625)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~  564 (625)
                      |..+..   .++   |..++.+- +.|..-.       +.....  .+...    .-...+..+...|....|...|..+
T Consensus       342 ~~~~a~---~~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l  407 (450)
T d1qsaa1         342 LHQLMQ---QRG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL  407 (450)
T ss_dssp             HHHHHT---SCS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhc---CCC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence            666553   122   22222111 1221000       000000  00000    0112345566788888888888887


Q ss_pred             HHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 038112          565 LEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDAL  600 (625)
Q Consensus       565 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  600 (625)
                      ...   .+......++....+.|.++.|+....+..
T Consensus       408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            752   245556667777888888888887776653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.033  Score=39.52  Aligned_cols=72  Identities=14%  Similarity=0.127  Sum_probs=50.7

Q ss_pred             CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038112          500 TPDVTMYNILIHGLCSAG---KVEDALQLYSNMKKRNCVPN-LVTYNTLMDGLFKTGDCDKALEIWNHILEERLRPDII  574 (625)
Q Consensus       500 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  574 (625)
                      .+...+-...++++.+..   +.++++.+++.+.+.+ +.+ ...+..|+-+|.+.|++++|.++++.+++  +.|+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~  107 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK  107 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence            455666667777777664   4457788888877642 223 35677788888888888888888888888  777543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.014  Score=41.42  Aligned_cols=74  Identities=11%  Similarity=-0.124  Sum_probs=57.0

Q ss_pred             CCHHHHHHHHHHhhCC---CChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccCCchHHHHHHHHhHHhhCCCcch
Q 038112           36 HSPHLFHHILRRLIDP---KLVVHVSRILELIEIQKCYCPEDVALSVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI  109 (625)
Q Consensus        36 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  109 (625)
                      +++.+-...+-++.+.   .+..+++.+++.+.+.++....+.+..++-+|.+.|+++.|+..++.+++..|.+..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            4455555566666654   4566899999999987654345788889999999999999999999999888876654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.56  E-value=0.84  Score=41.63  Aligned_cols=410  Identities=10%  Similarity=0.000  Sum_probs=205.1

Q ss_pred             HHHHHHHccCCchHHHHHHHHhHHhhCCCcch----h---hhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 038112           78 SVIQAYGKNSMPDKALDVFQRMNEIFGCEAGI----L---CRKRQFEKAKRFLNSLWEKGLKPDVYSYGTVINGLVKSGD  150 (625)
Q Consensus        78 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~---~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (625)
                      ..+.-..+.|+...+..+...+ +.+|-.|-+    +   .....+.+...++++-.  +.|.........+..+.+.++
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L-~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p--~~P~~~~lr~~~l~~L~~~~~   87 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARRED   87 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHhhh-cCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhccC
Confidence            4444556778888777777766 344433333    1   11223333333322211  111111222333445566666


Q ss_pred             hhhHHHHHHHHHhCCCCCCchhhHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhcCChhhHHHHHH
Q 038112          151 LLGALAVFDEMFERGVETNVVCYNILIDGFFKKGDYMRAKEIWERLVMETSVYPNVVTYNVMINGLCKCGRFDECLEMWD  230 (625)
Q Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  230 (625)
                      +...+..+.     ..+.+...-...+.+....|+.+.|......+-..+..  ....+..+                |.
T Consensus        88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~--~p~~c~~l----------------~~  144 (450)
T d1qsaa1          88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS--QPNACDKL----------------FS  144 (450)
T ss_dssp             HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--CCTHHHHH----------------HH
T ss_pred             HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CchHHHHH----------------HH
Confidence            655433221     12334444445566666677777776666655444321  12222222                33


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 038112          231 RMKKNEREKDSFTYCSFIHGLCKAGNVEGAERVYREMVESGIFVDA-VTYNAMIDGFCRAGKIKECFELWEVMGRKGCLN  309 (625)
Q Consensus       231 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  309 (625)
                      .+...|. .+...+-.-+......|++..|..+...+     +++. ......+....   +...+......    .+.+
T Consensus       145 ~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~~~----~~~~  211 (450)
T d1qsaa1         145 VWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFART----TGAT  211 (450)
T ss_dssp             HHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHH----SCCC
T ss_pred             HHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHHhc----CCCC
Confidence            3333222 33333334444555667777776665432     2222 22233333322   22222222211    1122


Q ss_pred             HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 038112          310 VVSYNILIRGLLE--NGKVDEAISIWELLREKNCNADSTTHGVLI----NGLCKNGYLNKAIQILNEVEEGGEGRLADAA  383 (625)
Q Consensus       310 ~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~  383 (625)
                      ......+..++.+  ..+.+.+...+......... +......+.    ......+..+.+...+.              
T Consensus       212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~--------------  276 (450)
T d1qsaa1         212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRD--------------  276 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHH--------------
T ss_pred             hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHH--------------
Confidence            2222222222222  35677888888777665332 222222222    22233455666666655              


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 038112          384 SLVNRMDKHGCKLNAYTCNSLMNGFIQASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKG  463 (625)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  463 (625)
                          .....+.  +.......+......+++..+...+..+... ........--+..++...|+.++|...|..+..  
T Consensus       277 ----~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--  347 (450)
T d1qsaa1         277 ----DAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--  347 (450)
T ss_dssp             ----HHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred             ----hhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc--
Confidence                3333322  3334444555567789999999999887543 111233334566788899999999999999874  


Q ss_pred             CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCC-HH---HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 038112          464 WKPDMITYSLLINGLCQSKKIDMALKLCCQFLQKGF--TPD-VT---MYNILIHGLCSAGKVEDALQLYSNMKKRNCVPN  537 (625)
Q Consensus       464 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  537 (625)
                       .++   |...+.+ .+.|..-.       +....+  .+. ..   .-...+..+...|....|...|..+...   .+
T Consensus       348 -~~~---fYG~LAa-~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~  412 (450)
T d1qsaa1         348 -QRG---FYPMVAA-QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KS  412 (450)
T ss_dssp             -SCS---HHHHHHH-HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CC
T ss_pred             -CCC---hHHHHHH-HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CC
Confidence             233   3333322 22232100       000000  001 00   0112345567899999999999988764   25


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038112          538 LVTYNTLMDGLFKTGDCDKALEIWNHIL  565 (625)
Q Consensus       538 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~  565 (625)
                      ......++....+.|.++.|+....++.
T Consensus       413 ~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         413 KTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            5566788888999999999998766653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.05  E-value=0.33  Score=33.89  Aligned_cols=139  Identities=12%  Similarity=0.120  Sum_probs=72.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 038112          410 QASKLENAIFLFKEMSRKGCSPTVVSYNTLINGLCKVERFGEAYSFVKEMLEKGWKPDMITYSLLINGLCQSKKIDMALK  489 (625)
Q Consensus       410 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  489 (625)
                      -.|..++..+++.+....   .+..-||.+|--....-+-+....+++..-+- +  |          ....++......
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHHHH
Confidence            346666666666665542   23344444443333444444444444444321 1  1          012233333333


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 038112          490 LCCQFLQKGFTPDVTMYNILIHGLCSAGKVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILEERL  569 (625)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  569 (625)
                      .+-.+     .-+...+...+..+..+|+-++-.++++.+.+. -++++.....++.+|.+.|+..++-+++.++.+.|+
T Consensus        78 C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            32221     113344455556666677777777776666554 366666667777777777777777777777776654


Q ss_pred             C
Q 038112          570 R  570 (625)
Q Consensus       570 ~  570 (625)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.48  E-value=1.2  Score=29.35  Aligned_cols=49  Identities=10%  Similarity=0.106  Sum_probs=29.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038112          518 KVEDALQLYSNMKKRNCVPNLVTYNTLMDGLFKTGDCDKALEIWNHILE  566 (625)
Q Consensus       518 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  566 (625)
                      +.-+..+-++.+...+..|++.+..+.+++|.+.+|+.-|+++++.+..
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344555555555555666666666666666666666666666666554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.35  E-value=1.5  Score=30.46  Aligned_cols=63  Identities=14%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 038112          279 YNAMIDGFCRAGKIKECFELWEVMGRKGCLNVVSYNILIRGLLENGKVDEAISIWELLREKNC  341 (625)
Q Consensus       279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  341 (625)
                      +...+.....+|+-+.-.+++..+.+.+.+++.....+..+|.+.|...++-+++.+.-+.|.
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334444555555555555555555555555555555555566666666555555555555543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.51  E-value=1.8  Score=28.41  Aligned_cols=65  Identities=12%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038112          553 DCDKALEIWNHILEERLRPDIISYNITLKGLCSCSRMSDAFEFLNDALCRGILPTTITWHILVRAV  618 (625)
Q Consensus       553 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  618 (625)
                      |.=+..+-++.+....+.|++.+....+++|.+.+++.-|+++++-.+.+. .++...|..+++-+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilqel   85 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL   85 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence            444677778888888899999999999999999999999999999998532 23455676665544