Citrus Sinensis ID: 038128

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILRHN
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEcccccccccccccccEEEcccccccccEEEEEccccccEEEEEEEEccccccccccEEEEEEcHHHHHcccccccEEEEccccEEcEEEEEEEEEEEccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEcccccccHHHcccccEEEccccccEcEEEEEEEEccccEEEEEEEcccccccccccEEEEEEHHHHHHccccccccEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
meaanvqgqplEVTVIACKglkdtewlskqdpyvyggknptfqekFMFPlihgvnemnLVVWnsntitgddfigsgkVQLTKAITqgyddnpwplwtrsgkhageVNIILRCANVWNFLVLYLSSFIlntgmtspayehgpavsypssdpppyhppagyggyppqpppsgypqpsayapppgphpygaphpapgpypygappnqhpngpppgahpygappgppsygygapqhghggdyilrhn
Flexible Loop (DISEMBL)
meaanvqgqpleVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILRHN
Low Complexity Region (SEG)
MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDpppyhppagyggyppqpppsgypqpsayapppgphpygaphpapgpypygappnqhpngpppgahpygappgppsygygapqHGHGGDYILRHN
Disordered region (IsUnstruct)
**********LEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMT**************************************************************************************************************
Disordered Region (DISOPRED)
***********EVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA**********************************************************************************************************************************
Disordered Region (DISEMBL)
MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILRHN
Disordered Region (DISPRO)
****NVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSS*ILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILR**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVWNFLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILRHN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
356497514	260	PREDICTED: uncharacterized protein LOC10	0.666	0.623	0.465	3e-39
449495646	248	PREDICTED: uncharacterized protein LOC10	0.469	0.459	0.573	7e-39
225428883	247	PREDICTED: uncharacterized protein LOC10	0.469	0.461	0.596	8e-39
358343839	279	Elicitor-responsive protein [Medicago tr	0.469	0.408	0.573	1e-38
255555333	246	protein binding protein, putative [Ricin	0.448	0.443	0.604	4e-38
356537593	258	PREDICTED: uncharacterized protein LOC10	0.444	0.418	0.593	6e-38
239835409	238	hypothetical protein [Nicotiana benthami	0.456	0.466	0.579	2e-37
358343853	247	Unc-13-like protein [Medicago truncatula	0.456	0.449	0.579	2e-37
388498452	247	unknown [Medicago truncatula]	0.456	0.449	0.579	2e-37
171854669	250	C2 domain-containing protein [Capsicum c	0.448	0.436	0.588	7e-37

>gi|356497514|ref|XP_003517605.1| PREDICTED: uncharacterized protein LOC100778230 [Glycine max]

 Score =  167 bits (424), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 120/200 (60%), Gaps = 38/200 (19%)

Query: 6   VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPL 50
           +QGQPLEVTV++C  LKDTEW+S+QDPYV                GGKNP FQEKF+FPL
Sbjct: 7   IQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKFIFPL 66

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIIL 110
           I G+ E+N++VWNSNT+T DDFIGSGK+QL K ++QG+DD+ WPL T++G++AGEV +IL
Sbjct: 67  IEGLRELNVLVWNSNTLTLDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTGRYAGEVKVIL 126

Query: 111 RCANVWNFLVLYLSSFILNTGMTSPAYEHGPAV-SYPSSDPPPYHPPAGYG-GYPPQPPP 168
             A             I N         H P+   Y ++  PP   P+ Y   YPP P  
Sbjct: 127 HYA-------------IANHQRHKSVSSHAPSAPPYVATTTPPV--PSSYSTSYPPPPSA 171

Query: 169 SGYPQPSAYAPPPGPHPYGA 188
           + YP      PPP  H  G+
Sbjct: 172 TSYP------PPPSYHTTGS 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495646|ref|XP_004159903.1| PREDICTED: uncharacterized protein LOC101231889 [Cucumis sativus]

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 15/129 (11%)

Query: 1   MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEK 45
           M    +QGQPLEVTVI C  LKDTEW+S+QDPYV+               GG+NPTFQEK
Sbjct: 1   MSTFAIQGQPLEVTVIGCTKLKDTEWISRQDPYVFLEYGSTKFRTTTCTDGGRNPTFQEK 60

Query: 46  FMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE 105
           F+F LI G+ E+N+ VWNSNT+T DDFIG+GK+QL K + +GYDD+ W L T++G+HAGE
Sbjct: 61  FVFSLIEGLREINVTVWNSNTVTYDDFIGNGKIQLAKVLAEGYDDSSWSLQTKTGRHAGE 120

Query: 106 VNIILRCAN 114
           V +IL  AN
Sbjct: 121 VRLILHFAN 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428883|ref|XP_002285315.1| PREDICTED: uncharacterized protein LOC100241815 [Vitis vinifera] gi|296090460|emb|CBI40279.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (420), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/129 (59%), Positives = 93/129 (72%), Gaps = 15/129 (11%)

Query: 1   MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEK 45
           M  + +QGQ LEVTV+ C  LKDTEW+S+QDPYV                GGKNPTFQEK
Sbjct: 1   MSISGIQGQLLEVTVVGCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEK 60

Query: 46  FMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE 105
           F+F LI G+ E+N VVWNSNT+T DDFIGSGK+QL K ++QGYDD  WPL T++G+HAGE
Sbjct: 61  FVFTLIEGLREVNAVVWNSNTLTYDDFIGSGKIQLQKVLSQGYDDTAWPLQTKTGRHAGE 120

Query: 106 VNIILRCAN 114
           V +IL  AN
Sbjct: 121 VRLILHYAN 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343839|ref|XP_003636003.1| Elicitor-responsive protein [Medicago truncatula] gi|355501938|gb|AES83141.1| Elicitor-responsive protein [Medicago truncatula] gi|388520725|gb|AFK48424.1| unknown [Medicago truncatula]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 95/129 (73%), Gaps = 15/129 (11%)

Query: 1   MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEK 45
           M  + +QGQPLEVTV++C  LKDTEW+S+QDPYV                GGKNP FQEK
Sbjct: 1   MMMSGIQGQPLEVTVVSCSKLKDTEWISRQDPYVCIEYASTKFRTRTCTDGGKNPVFQEK 60

Query: 46  FMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE 105
           F+ PLI G+ E+N+VVWNSNT++ DDFIG+GKVQL K ++QG+DD+ WPL T++G+HAGE
Sbjct: 61  FILPLIEGLREINVVVWNSNTVSFDDFIGTGKVQLHKVLSQGFDDSSWPLQTKTGRHAGE 120

Query: 106 VNIILRCAN 114
           V +IL   N
Sbjct: 121 VKLILHYTN 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555333|ref|XP_002518703.1| protein binding protein, putative [Ricinus communis] gi|223542084|gb|EEF43628.1| protein binding protein, putative [Ricinus communis]

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/124 (60%), Positives = 92/124 (74%), Gaps = 15/124 (12%)

Query: 6   VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPL 50
           +QGQ LEVTV+ C  LKDTEW+S+QDPYV                GGKNPTFQEKF+F L
Sbjct: 7   IQGQLLEVTVVGCNKLKDTEWISRQDPYVIVEYGSNKSRTRTCTDGGKNPTFQEKFVFTL 66

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIIL 110
           I G+ E+NLVVWNSNT+T DDFIGSGKVQL K +++GYDD+ W L T++G++AGEV +IL
Sbjct: 67  IEGLRELNLVVWNSNTLTYDDFIGSGKVQLQKVLSEGYDDSTWTLQTKTGRYAGEVRLIL 126

Query: 111 RCAN 114
             AN
Sbjct: 127 HYAN 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537593|ref|XP_003537311.1| PREDICTED: uncharacterized protein LOC100776879 [Glycine max]

 Score =  163 bits (412), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 94/123 (76%), Gaps = 15/123 (12%)

Query: 6   VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPL 50
           +QGQPLEVTV++C  LKDTEW+S+QDPYV                GGKNP FQEKF+FPL
Sbjct: 7   IQGQPLEVTVVSCSKLKDTEWISRQDPYVCVEYGSTKFRTRTCTDGGKNPVFQEKFIFPL 66

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIIL 110
           I G+ E+N++VWNSNT+T DDFIGSGK+QL K ++QG+DD+ WPL T++G++AGEV +IL
Sbjct: 67  IEGLRELNVLVWNSNTLTFDDFIGSGKIQLHKVLSQGFDDSAWPLQTKTGRYAGEVKVIL 126

Query: 111 RCA 113
             A
Sbjct: 127 HYA 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|239835409|dbj|BAH78126.1| hypothetical protein [Nicotiana benthamiana]

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 94/126 (74%), Gaps = 15/126 (11%)

Query: 4   ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMF 48
           + +QGQ LEVTV++C  LKDTEW+S+QDPYV                GGKNPTFQEKF+F
Sbjct: 5   SGIQGQLLEVTVVSCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEKFVF 64

Query: 49  PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108
            LI G+ E+N+VVWNSNTI+ DDFIGSGK+QL K ++QGYDD  WP+ T++G+HAGE+ +
Sbjct: 65  TLIEGLREINVVVWNSNTISYDDFIGSGKIQLHKVLSQGYDDTAWPIQTKTGRHAGEIQL 124

Query: 109 ILRCAN 114
           I+  AN
Sbjct: 125 IMHYAN 130

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343853|ref|XP_003636010.1| Unc-13-like protein [Medicago truncatula] gi|217072348|gb|ACJ84534.1| unknown [Medicago truncatula] gi|355501945|gb|AES83148.1| Unc-13-like protein [Medicago truncatula]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 92/126 (73%), Gaps = 15/126 (11%)

Query: 4   ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMF 48
           A +QGQPLEVTV+ C  LKDTEW+S+QDPYV                GGKNP FQEKF+F
Sbjct: 8   AGIQGQPLEVTVVCCSKLKDTEWISRQDPYVCLEYATNKFRTKTCTDGGKNPVFQEKFVF 67

Query: 49  PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108
            LI G+ E+N+ VWN NT+T DDFIG+GKVQL K ++QG+DD+ WPL T++G+HAGEV +
Sbjct: 68  SLIEGLREINVAVWNYNTVTSDDFIGTGKVQLHKVLSQGFDDSAWPLQTKNGRHAGEVKL 127

Query: 109 ILRCAN 114
           I+  AN
Sbjct: 128 IMHYAN 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498452|gb|AFK37292.1| unknown [Medicago truncatula]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 92/126 (73%), Gaps = 15/126 (11%)

Query: 4   ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMF 48
           A +QGQPLEVTV+ C  LKDTEW+S+QDPYV                GGKNP FQEKF+F
Sbjct: 8   AGIQGQPLEVTVVCCSKLKDTEWISRQDPYVCLEYATNKFRTKTCTDGGKNPVFQEKFVF 67

Query: 49  PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108
            LI G+ E+N+ VWN NT+T DDFIG+GKVQL K ++QG+DD+ WPL T++G+HAGEV +
Sbjct: 68  SLIEGLREINVAVWNYNTVTSDDFIGTGKVQLHKVLSQGFDDSAWPLQTKNGRHAGEVKL 127

Query: 109 ILRCAN 114
           I+  AN
Sbjct: 128 IMHYAN 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171854669|dbj|BAG16524.1| C2 domain-containing protein [Capsicum chinense]

 Score =  159 bits (403), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 15/124 (12%)

Query: 6   VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPL 50
           +QGQ LEVTV++C  LKDTEW+S+QDPYV                GGKNPTFQEKF+F L
Sbjct: 7   IQGQLLEVTVVSCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEKFVFTL 66

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIIL 110
           I G+ E+N+VVWNSNT+T DDFIGSGK+QL K ++ GYDD  WP+ T+SG+H GEV +I+
Sbjct: 67  IEGLPEINVVVWNSNTVTHDDFIGSGKIQLQKVLSAGYDDTAWPIQTKSGRHGGEVRLIM 126

Query: 111 RCAN 114
             AN
Sbjct: 127 FYAN 130

Source: Capsicum chinense

Species: Capsicum chinense

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2124321	247	AT4G34150 "AT4G34150" [Arabido	0.452	0.445	0.504	2.4e-28
TAIR|locus:2038461	147	AT1G63220 "AT1G63220" [Arabido	0.316	0.523	0.282	1.2e-05

TAIR|locus:2124321 AT4G34150 "AT4G34150" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 63/125 (50%), Positives = 84/125 (67%)

Query:     4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYV---YGG------------KNPTFQEKFMF 48
             A +QGQ LEVTV+ C+ LKDTEW S+QDPYV   YGG            KN  FQEKF+F
Sbjct:     5 AGIQGQILEVTVVGCQKLKDTEWFSRQDPYVVLEYGGRSHRTRTCTDGGKNAVFQEKFIF 64

Query:    49 PLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI 108
              LI G+ ++ + VWNSNT++ DDFIG+  +QL K ++Q YDD  W L +++G+ AGEV +
Sbjct:    65 TLIEGLRDLKVAVWNSNTLSTDDFIGNATIQLQKVLSQEYDDCTWTLQSKTGRFAGEVQL 124

Query:   109 ILRCA 113
             +L  A
Sbjct:   125 LLHYA 129

GO:0009409 "response to cold" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2038461 AT1G63220 "AT1G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/92 (28%), Positives = 44/92 (47%)

Query:    11 LEVTVIACKGLKDTEWLSKQDPYVY--------------G-GKNPTFQEKFMFPLIHGVN 55
             LEV +++ KGL+D ++L+  DPYV               G G  P + E F+F +  G  
Sbjct:     6 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query:    56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87
             E+   +++ +  T DD +G   + L     +G
Sbjct:    66 ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       161   0.00074  107 3  11 22  0.40    32
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  174 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.77u 0.12s 13.89t   Elapsed:  00:00:01
  Total cpu time:  13.77u 0.12s 13.89t   Elapsed:  00:00:01
  Start:  Fri May 10 16:18:00 2013   End:  Fri May 10 16:18:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
cd00030	102	cd00030, C2, C2 domain	5e-15
pfam00168	85	pfam00168, C2, C2 domain	2e-13
smart00239	101	smart00239, C2, Protein kinase C conserved region	5e-12
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-12
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-09
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	7e-09
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-06
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-05
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	6e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	1e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-04
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-04
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	4e-04
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	5e-04
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	6e-04
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	6e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam06495	182	pfam06495, Transformer, Fruit fly transformer prot	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.002
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	0.002
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	0.002
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
pfam07777	189	pfam07777, MFMR, G-box binding protein MFMR	0.002
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.004
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.004
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	0.004
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	0.004

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 16/99 (16%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV---YGGK------------NPTFQEKFMFPLIHGVN 55
          L VTVI  + L   +   K DPYV    GGK            NP + E F FP++   +
Sbjct: 1  LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 56 -EMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPW 93
            + + VW+ +  + DDF+G  ++ L++ +  G +   W
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELW 99

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 18/82 (21%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV---YGGK--------------NPTFQEKFMFPLI-H 52
          L VTVI+ K L   +   K DPYV    GG+              NP + E F F +   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 53 GVNEMNLVVWNSNTITGDDFIG 74
           + E+ + V++ +    DDFIG
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIG 82

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 60.2 bits (146), Expect = 5e-12
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV-----------------YGGKNPTFQEKFMFPLIH- 52
          L V +I+ + L   +   K DPYV                     NP + E F F +   
Sbjct: 2  LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPP 61

Query: 53 GVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDD 90
           + E+ + V++ +    DDFIG   + L+  +  G  +
Sbjct: 62 ELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 19/96 (19%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV---YG------------GKNPTFQEKFMF----PLI 51
          LEV +I+ KGL+DT++L K DPYV                 G+NP + EKF F    P  
Sbjct: 3  LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62

Query: 52 HGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87
           G  ++ L + + +  + DDFIG   + L     +G
Sbjct: 63 GGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 28/125 (22%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV----------------YGGKNPTFQEKFMFPL---- 50
           LE+T+I+ + LK+     K   Y                  GG NPT+ E   FPL    
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61

Query: 51  -IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNP------WPLWTRSGKHA 103
              G   + + V+      GD  IG  +V L K +  G           + L   SGK  
Sbjct: 62  LQQGRLALTIEVYCERPSLGDKLIGEVRVPL-KDLLDGASPAGELRFLSYQLRRPSGKPQ 120

Query: 104 GEVNI 108
           G +N 
Sbjct: 121 GVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 55.2 bits (133), Expect = 7e-09
 Identities = 30/116 (25%), Positives = 37/116 (31%), Gaps = 12/116 (10%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
           G  +P   H    S P    P   P  GYGG      P G P+          +P     
Sbjct: 93  GEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQR 152

Query: 191 PAPGPYP---YGAPPNQHPNGPPPGAHPYGAPPGP--------PSYGYGAPQHGHG 235
           P PG +P         Q   G PP A PY +P             Y  G P++   
Sbjct: 153 PEPGAWPRAADDYGWQQQRLGFPPRA-PYASPASYAPEQERDREPYDAGRPEYDQR 207

Length = 617

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 20/115 (17%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLI-HGV 54
           L V V+  + L +   L KQDPY                 GG++P + E+  F +     
Sbjct: 3   LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62

Query: 55  NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG-YDDNPWPLWTRSGKHAGEVNI 108
             + + V++ +     D IG  +V L+ A+ +G +DD  W   T  G++AGEV +
Sbjct: 63  PILKVAVFD-DDKRKPDLIGDTEVDLSPALKEGEFDD--WYELTLKGRYAGEVYL 114

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 26/86 (30%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 146 PSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPY----PYGAP 201
           P+S  P   P +  G      PP     PS  + PP P  + +  P P P     P   P
Sbjct: 179 PASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPP 238

Query: 202 PNQHPNGPPPGAHPY--GAPPGPPSY 225
               P  PP    P    A P PPS 
Sbjct: 239 GPAAPPPPPVQQVPPLSTAKPTPPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 1/89 (1%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
           SP     P+     S P     P     +    PP     P+  +PPPGP     P    
Sbjct: 191 SPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGP 222
            P    A P   P+     A   G     
Sbjct: 251 VPPLSTAKPT-PPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 26/108 (24%), Positives = 28/108 (25%), Gaps = 8/108 (7%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPA 192
             P  +  P    P     P   P       PQPP     Q       P P    A  P 
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPL 232

Query: 193 PGPYPYGAPPNQHP------NGPPPGA--HPYGAPPGPPSYGYGAPQH 232
           P   P   PP Q P         PP     P      P       PQ+
Sbjct: 233 PPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQN 280

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 2/109 (1%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
           +PA       +  +  P     PA      P PP      P+  AP P P    +  PAP
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILRH 242
            P      P   P   PP A    A P  P+    AP        +   
Sbjct: 469 APAA-APEPTAAPAPAPPAAPAPAAAPAAPAAP-AAPAGADDAATLRER 515

Length = 824

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 22/121 (18%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPY--------VY-------GGKNPTFQEKFMFPLIHGVN 55
           L +TV+  K +K+   L++ DPY        VY       G KNP + +     L  GV+
Sbjct: 4   LSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVD 62

Query: 56  EMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHA----GEVNIILR 111
            + + +++    T D+ I    + + +++  G   + W  ++ SGK      G +N++  
Sbjct: 63  SIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDW--YSLSGKQGEDKEGMINLVFS 120

Query: 112 C 112
            
Sbjct: 121 Y 121

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 26/105 (24%), Positives = 30/105 (28%), Gaps = 3/105 (2%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPA 192
              +    P V+ P   P     P    G    P  +G   P+A  P P P    AP  A
Sbjct: 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Query: 193 PGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGD 237
               P  AP    P        P   PP     G  AP       
Sbjct: 697 APAQPAPAPAATPP--AGQADDPAAQPPQAAQ-GASAPSPAADDP 738

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 2/92 (2%)

Query: 146 PSSDPPPYHPPAGYGGYPPQPPP--SGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPN 203
             +D    +    + G    P       P  S+   P  P P   P          AP +
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218

Query: 204 QHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHG 235
              + PPP       P  PP      P     
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQ 250

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 23/102 (22%), Positives = 25/102 (24%), Gaps = 9/102 (8%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPG------- 182
                   +  P    P    P   P       P  P     P P      PG       
Sbjct: 200 PPGYPQPPQGHPEQVQPQQFLP--APSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPP 257

Query: 183 PHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
           P P         P P   PP Q+   P PG       P PP 
Sbjct: 258 PPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPP 299

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 23/120 (19%), Positives = 27/120 (22%), Gaps = 16/120 (13%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
              +    AV   S     +   AG       PP      P+A A      P  AP   P
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Query: 194 GPYPYGAPPNQHPNG----------------PPPGAHPYGAPPGPPSYGYGAPQHGHGGD 237
                  P  Q P                   PP       P G P+     P       
Sbjct: 710 PAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAA 769

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 24/98 (24%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 140 GPAVSYPSSDPPPYHPPAGYGGYPPQPP-----PSGYPQPSAYAPPPGPHPYGAPHPAPG 194
             A S  ++ P     PA         P     P   P P+    PP P        AP 
Sbjct: 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPS 455

Query: 195 PYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQH 232
           P P  AP  Q    P     P  AP   P         
Sbjct: 456 PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 27/105 (25%), Positives = 30/105 (28%), Gaps = 6/105 (5%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
            PA   G A + P   P P  P A  G      P    P P+A  PP G     A  P  
Sbjct: 669 WPAKAGGAAPAAPPPAPAPAAPAAPAG----AAPAQPAPAPAA-TPPAGQADDPAAQPPQ 723

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDY 238
                 AP     +  P    P   PP P       P        
Sbjct: 724 AAQGASAPSPAADDPVPLPPEP-DDPPDPAGAPAQPPPPPAPAPA 767

Length = 824

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 22/80 (27%), Positives = 25/80 (31%), Gaps = 9/80 (11%)

Query: 156 PAGYGGYPPQPPPSGYPQPSAYAPP-----PGPHPYGAPHPAPGPYPYGAPPNQHPNGPP 210
           PAG      + P    PQP  +  P     PG  P   P PA  P P   PP        
Sbjct: 384 PAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVA----RS 439

Query: 211 PGAHPYGAPPGPPSYGYGAP 230
               P      P +   G P
Sbjct: 440 APLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 31/116 (26%)

Query: 13  VTVIACKGLKDTEWLSKQDPYVY---GGK-----------NPTFQEKFMF-------PLI 51
           V V + +GL   +     DPYV     G+           +P F  + +F       P+ 
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 52  HGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVN 107
                  + VWNSN +  D+F+  G+  L+            PL  R    AGEV 
Sbjct: 67  -------IQVWNSNLL-CDEFL--GQATLSADPNDSQTLRTLPLRKRGRDAAGEVP 112

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 1/95 (1%)

Query: 138 EHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYP 197
           E    V+  +  P    P A        P P+     +A AP P   P  AP PAP P P
Sbjct: 382 ERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP 441

Query: 198 YGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQH 232
                N  P G  P   P  AP   P+    A   
Sbjct: 442 PSPAGNA-PAGGAPSPPPAAAPSAQPAPAPAAAPE 475

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/91 (21%), Positives = 26/91 (28%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
             A    PA +  ++   P  PPA     P   P +  P  +  A P       AP    
Sbjct: 396 QAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
            P     P    P      A P  A     +
Sbjct: 456 APETVAIPVRVAPEPAVASAAPAPAAAPAAA 486

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 31/112 (27%), Positives = 33/112 (29%), Gaps = 18/112 (16%)

Query: 135  PAYEHGPAVSYPSSDPPPYHPPAGYGGYP-----------PQPPPSGYPQPSAYAPP-PG 182
                  P+ S  +    P  PP      P           P   P   PQP A  PP P 
Sbjct: 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQ 2920

Query: 183  PHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
            P P   P P P P P   P       PP       A  G PS     P  G 
Sbjct: 2921 PQPPPPPQPQPPPPPPPRPQ------PPLAPTTDPAGAGEPSGAVPQPWLGA 2966

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 26/101 (25%), Gaps = 5/101 (4%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP---QPSAYAPPPGPHPYGAPH 190
           +PA    PA    +                  P P       Q SA  P   P P  AP 
Sbjct: 396 APAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP--APA 453

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
           PA  P     P    P      A    A   P +    A  
Sbjct: 454 PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494

Length = 700

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 19/87 (21%)

Query: 13 VTVIACKGLKDTEWLSKQDPYV--------------YGGKNPTFQEKF---MFPLIHGVN 55
          + ++  K L   +     DPYV                  NP + E+F   +F     + 
Sbjct: 4  IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQIL 63

Query: 56 EMNLVVWNSNTITGDDFIGSGKVQLTK 82
          E+   VW+ +T   D+FIG  ++ L+ 
Sbjct: 64 EIE--VWDKDTGKKDEFIGRCEIDLSA 88

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 28/102 (27%), Gaps = 15/102 (14%)

Query: 145 YPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQ 204
               +P  +   A    Y  Q    G+P  + YA P       AP       PY A   +
Sbjct: 150 QQRPEPGAWPRAA--DDYGWQQQRLGFPPRAPYASPASY----APEQERDREPYDAGRPE 203

Query: 205 HPNGPPPGAHPYGAPPGP---------PSYGYGAPQHGHGGD 237
           +        HP      P         P  G G    G  G 
Sbjct: 204 YDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGP 245

Length = 617

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 19/92 (20%), Gaps = 4/92 (4%)

Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGA 200
           P  S P     P  P           PP   P       PP           P       
Sbjct: 187 PPSSSPGVPSFPSPPEDPSSPSDSSLPP--APSSFQSDTPPPSPESPTNPSPPPGPAAPP 244

Query: 201 PPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQH 232
           PP      P   A P   PP   +        
Sbjct: 245 PPPVQQVPPLSTAKP--TPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/106 (19%), Positives = 25/106 (23%), Gaps = 3/106 (2%)

Query: 129 NTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA 188
                  A EH P      + P       G+        P+  P   A A P  P     
Sbjct: 642 APAPGVAAPEHHPK---HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAP 698

Query: 189 PHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
             PAP P               P     GA    P+     P    
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPP----SGYPQPSAYAPPPGPHPYGA 188
            +PA   G A + P+  P    P         QPP     +  P P+A  P P   P   
Sbjct: 688 AAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP-LPPEPD 746

Query: 189 PHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPP 223
             P P   P   PP   P      A      P   
Sbjct: 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 24/101 (23%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPP-PGPHPYGAPHP 191
            + A EH  A   P     P +  A       QPP +  P   A  P  P P P   P  
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAY 134

Query: 192 APGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQH 232
            P P      P      P P        P   ++    P  
Sbjct: 135 QPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVA 175

Length = 333

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 24/87 (27%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEKFMFPL- 50
           L V V+  + L  ++     DPYV      GGK              NP F E F F + 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 51  ---IHGVNEMNLVVWNSNTITGDDFIG 74
              +  V+ + + V + +++  ++ IG
Sbjct: 76  AEQLEEVS-LVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 22/86 (25%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEKFMFPL- 50
           + V +I  + LK  +     DPYV     Y  K              NP F E F+F + 
Sbjct: 17  ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP 76

Query: 51  IHGVNEMNLV--VWNSNTITGDDFIG 74
           +  + E  L+  V + + ++ +D IG
Sbjct: 77  LERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 20/92 (21%), Positives = 25/92 (27%), Gaps = 2/92 (2%)

Query: 140 GPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYG 199
               + P++   P  P A         P      P+     P  HP     P       G
Sbjct: 609 PEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDG 668

Query: 200 APPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
            P      G  P A P    P  P+   GA  
Sbjct: 669 WPAK--AGGAAPAAPPPAPAPAAPAAPAGAAP 698

Length = 824

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 19/94 (20%), Positives = 23/94 (24%), Gaps = 5/94 (5%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
           G   P     P  + P++ P P    A      P P  S      + AP     P G P 
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAA----SPSPSQSSAAAQPS-APQSATQPAGTPP 425

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
                 P   P N     P               
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 21/93 (22%), Positives = 28/93 (30%)

Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGA 200
            A +  ++ P     PA      P P P+  P P + A         +P PA  P    A
Sbjct: 408 AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPA 467

Query: 201 PPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHG 233
           P       P     P       P+    AP   
Sbjct: 468 PAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 15/69 (21%), Positives = 17/69 (24%)

Query: 147 SSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHP 206
              P         GG  P  P +     +A A P    P  A    P      A P    
Sbjct: 391 PPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPA 450

Query: 207 NGPPPGAHP 215
             P P    
Sbjct: 451 AAPQPAVRL 459

Length = 598

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 34/102 (33%)

Query: 11  LEVTVIACKGLK--DTEWLSKQDPYV-------------------YGGKNPTFQEKFMFP 49
           L  T+I  KGLK  D   LS  DPYV                   +  +NP F E   + 
Sbjct: 17  LHCTIIRAKGLKAMDANGLS--DPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY- 73

Query: 50  LIHGVNEMN-------LVVWNSNTITGDDFIGSGKVQLTKAI 84
             +G+ E +       L+V + +   G+DF+G  ++ L K  
Sbjct: 74  --YGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLK 112

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 26/86 (30%)

Query: 16 IACKGLKDTEWLSKQDPYVY-----GGK----------------NPTFQEKFMFP-LIHG 53
          I+C+ L D + LSK DP+V      GG                 NP F   F        
Sbjct: 7  ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 54 VNEMNLVVW----NSNTITGDDFIGS 75
          V ++   V+     S  ++  DF+G 
Sbjct: 67 VQKLRFEVYDVDSKSKDLSDHDFLGE 92

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 145 YPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQ 204
               DP PY P       PP   P  YP  + + PPPG  P   P P PG  P   PP  
Sbjct: 51  EEPYDPTPYPPS------PPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPP 104

Query: 205 HPNGPPPGAHPYGAPPGPPSY 225
               PPP  +PY   PG   Y
Sbjct: 105 -GAVPPPQNYPYPPGPGQDPY 124

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 37.9 bits (89), Expect = 6e-04
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV---------YGGK------NPTFQEKFMFPLIHGV- 54
          L V VI+ + L   +   K DP+V         +  K      NP + E F  P+   V 
Sbjct: 1  LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 55 NEMNLVVWNSNTITGDDFIGSGKVQL 80
            + + V++ +    DD +GS  + L
Sbjct: 61 AVLKVEVYDWDRGGKDDLLGSAYIDL 86

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 19/93 (20%), Positives = 20/93 (21%), Gaps = 12/93 (12%)

Query: 150 PPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQ----- 204
           PP  HP           P     QP      P   P       PG      PP       
Sbjct: 206 PPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGL-SQQMPPPPPQPPQ 264

Query: 205 ------HPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
                  P   PP  +     PG P        
Sbjct: 265 QQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLP 297

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 19/96 (19%), Positives = 22/96 (22%), Gaps = 3/96 (3%)

Query: 142 AVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAP 201
            V       P      G        PP    +P+A A P  P    AP PA         
Sbjct: 583 QVEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP---AAPAPAGAAAAPAEA 639

Query: 202 PNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGD 237
                 G     H       P +   G       G 
Sbjct: 640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/93 (19%), Positives = 20/93 (21%), Gaps = 1/93 (1%)

Query: 139 HGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPY 198
              A        P    P      P  P     P   A A         +  PAPG    
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-AA 649

Query: 199 GAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
                +H   P       G P         AP 
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPP 682

Length = 824

>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 151 PPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGP-HPYGAPHP-APGPYPYGAPP 202
           P    P  YG  PP P  SG      Y   P P  PY AP+P  P P+ Y APP
Sbjct: 122 PAADYPYAYGWPPPAPQFSGMQGAFPYGMLPRPVPPYFAPYPRPPAPFRYRAPP 175

This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster. Length = 182

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 34/114 (29%)

Query: 4   ANVQGQPLEVTVIACKGL--KDTEWLSKQDPYVYGGK----------------------N 39
            +V+   L V V   K L   D   LS  DPYV   K                      N
Sbjct: 8   ISVKDNKLTVEVREAKNLIPMDPNGLS--DPYV---KLKLIPDPKNETKQKTKTIKKTLN 62

Query: 40  PTFQEKFMFPLIHGVNEMNLV--VWNSNTITGDDFIGS---GKVQLTKAITQGY 88
           P + E F F L     +  L   VW+ +  T +DF+GS   G  +L K    G+
Sbjct: 63  PVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMPVDGW 116

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGA 200
           PA +     PPP          PP    +  P P+A  PPP P    AP P   P     
Sbjct: 34  PATANADPAPPP----------PPPSTAAAAPAPAAPPPPPPPAAPPAPQPDD-PNAAPP 82

Query: 201 PPNQHPNGPPPGAHPYGAPPGPP 223
           PP   PN PPP      APP P 
Sbjct: 83  PPPADPNAPPPPPVDPNAPPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 20/76 (26%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 163 PPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGA--HPYGAPP 220
            PQPP    PQ     P     P   P   P  YP   P        P      P  AP 
Sbjct: 172 LPQPPQQVLPQGMP--PRQAAFPQQGPPEQPPGYP-QPPQGHPEQVQPQQFLPAPSQAPA 228

Query: 221 GPPSYGYGAPQHGHGG 236
            PP       Q     
Sbjct: 229 QPPLPPQLPQQPPPLQ 244

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 142 AVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAP 201
            V+  ++ P P   PA     P  PP +    P+  A P    P  AP  AP      AP
Sbjct: 393 PVAQAAAAPAPAAAPAAAASAPAAPPAA--APPAPVAAPAAAAPAAAPAAAPAAVAL-AP 449

Query: 202 PNQHPNGPPPGAHPYGAPPGPP 223
                  P   A P    P P 
Sbjct: 450 APPAQAAPETVAIPVRVAPEPA 471

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 140  GPAVS----YPSSDPPPYHP--PAGYGGYPPQPPPSGYPQPSAYAP-PPGPHPYGAPHPA 192
             PAV+     P + P    P  P    G P  P P     P  +AP PP P P  A +  
Sbjct: 2579 EPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEP 2638

Query: 193  PGPYPYGAPPNQHPNGPPPG 212
                P   PP + P   P  
Sbjct: 2639 DPHPPPTVPPPERPRDDPAP 2658

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 17/89 (19%), Positives = 21/89 (23%), Gaps = 4/89 (4%)

Query: 135 PAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPG 194
            A +        +  P P    A      P          +A A P    P  AP PA  
Sbjct: 435 AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494

Query: 195 PYPYGAPPNQHPNGPPPGAHPYGAPPGPP 223
                 PP +          P      P 
Sbjct: 495 ----DPPPWEELPPEFASPAPAQPDAAPA 519

Length = 700

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 11  LEVTVIACKGLKDTEWLSKQ--DPYV-------YGGK--------NPTFQEKFMFPLIHG 53
           +EV + + +GLK ++       DPY+         GK        NP + E F   L   
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497

Query: 54  VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVN 107
            + +NL +++ N+   D  +GS ++ L          N    + R+ K+ G + 
Sbjct: 498 TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLT 551

Length = 1227

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 11 LEVTVIACKGLKDTEWLSKQDPYV--------------YGGKNPTFQEKFMFPLIHGVNE 56
          + +TV+  +GL   +     DPYV                  NP + EKF F   +  + 
Sbjct: 3  ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 57 MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDD 90
          + + VW+ +    DD     K +L +  T+  DD
Sbjct: 63 IKVRVWDED----DDI----KSRLKQKFTRESDD 88

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 33/98 (33%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP---QPSAYAPPPGPHPY 186
                PA   G A   P++ P    PPA   G     PP+  P   +P A AP     P 
Sbjct: 712 GRAQRPAAATGRARP-PAAAPGRARPPAAAPG--RARPPAAAPGRARPPAAAPGRARPPA 768

Query: 187 GAP-HPAPGPYPYGAP-PNQHPNGPPPGAHPYGAPPGP 222
            AP  P P P P   P P Q P G P    P  A P  
Sbjct: 769 AAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTS 806

Length = 991

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 167 PPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYG 226
           PPS        A P  P P  AP   P P    A P      P P      A   PP+  
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAP---PVPPAAPARPAAARPAPAP---APPAAAAPPARS 437

Query: 227 YGAPQHGHGGD 237
                    GD
Sbjct: 438 ADPAAAASAGD 448

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 16/71 (22%), Positives = 18/71 (25%), Gaps = 3/71 (4%)

Query: 156 PAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHP 215
           P       P P     P P+A  P P   P       P P P        P      A P
Sbjct: 384 PPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPA---RSADP 440

Query: 216 YGAPPGPPSYG 226
             A      + 
Sbjct: 441 AAAASAGDRWR 451

Length = 576

>gnl|CDD|219569 pfam07777, MFMR, G-box binding protein MFMR

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 31/103 (30%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPY--GAPH 190
                    +V   +  P  Y   +    Y    PP  Y   S+ A  P PHPY  G   
Sbjct: 8   KPSKSSPKTSVQEDTPTPTVYPDWSAMQAYYGPRPPPPY-FNSSVASSPQPHPYMWGPQQ 66

Query: 191 PAPGPYPYGAPPNQHPNGPPPG--AHPYGAPPGPPSYGYGAPQ 231
           P     PYG PP      PP G  AHP   PPG   +   A  
Sbjct: 67  PMMP--PYGTPPPYAAMYPPGGVYAHP-SMPPGSHPFSPYAMP 106

This region is found to the N-terminus of the pfam00170 transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain), whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C, classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals. Length = 189

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 29/90 (32%)

Query: 11 LEVTVIACKGLKDTEWLSKQ--DPYV----YG-----------------GKNPTFQEKFM 47
          L + +I+ + L   +       DPYV    +G                 G NP + E F 
Sbjct: 4  LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 48 FPLIHGVNEMNLV---VWNSNTITGDDFIG 74
          F +   V E+  +   V++ ++   DDF+G
Sbjct: 64 FDVT--VPELAFLRFVVYDEDSG-DDDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 19/90 (21%), Positives = 22/90 (24%)

Query: 135 PAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPG 194
            A     A + P+       P        P      +       P       G P  A G
Sbjct: 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGG 675

Query: 195 PYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
             P   PP   P  P   A    A P P  
Sbjct: 676 AAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 25/91 (27%), Positives = 27/91 (29%)

Query: 134  SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
             P    GP    P + P    P             S    PS + P   P    AP  A 
Sbjct: 2759 RPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAL 2818

Query: 194  GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
             P    A P   P    P A P    P PPS
Sbjct: 2819 PPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 34/118 (28%), Positives = 38/118 (32%), Gaps = 20/118 (16%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP---QPSAYAPPPGPHPY 186
             M  P     P    P++ P     PA   G     PP+  P   +P A AP     P 
Sbjct: 692 GTMQPPPRAPTPM-RPPAAPPGRAQRPAAATG--RARPPAAAPGRARPPAAAPGRARPPA 748

Query: 187 GAP--------HPAPGPYPYGAP----PNQHPNGPP-PGAHPYGAP-PGPPSYGYGAP 230
            AP         P     P  AP    P   P  PP P   P GAP P PP       
Sbjct: 749 AAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTS 806

Length = 991

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 140 GPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYG 199
             A +  ++                 P       P+A AP   P P  A   A  P    
Sbjct: 41  TAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPP 100

Query: 200 AP-PNQHPNGPPPGAH 214
           A      P        
Sbjct: 101 AAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 163 PPQPPPSGYPQPSAYAPP-PGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPG 221
           P   P    P  +A +P  P P P   P  A         P +    PPP      APP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 222 PP 223
           P 
Sbjct: 422 PH 423

Length = 585

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 33/106 (31%), Positives = 37/106 (34%), Gaps = 11/106 (10%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYP-PQ-------PPPSGYPQPSAYAPPPGPHP 185
           +P           S D PP  P   +   P PQ       P P GYPQ S YA P   + 
Sbjct: 335 APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYN 394

Query: 186 YGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
                P     PY AP  + P   P  A    AP  P    Y AP 
Sbjct: 395 EPLQQPVQPQQPYYAPAAEQPAQQPYYA---PAPEQPAQQPYYAPA 437

Length = 1355

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 147  SSDPPPYHPPAGYGGYPPQ--PPPSGYPQPS-----AYAPPPGPHPYGAPHPAPGPYPYG 199
            + DPPP  PPA     P +  PPP   P+PS     + A  P   P  A   AP      
Sbjct: 2548 AGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD 2607

Query: 200  APPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
                  P+  PP  H    PP  PS     P    
Sbjct: 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHP 2642

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 31/104 (29%), Positives = 32/104 (30%), Gaps = 16/104 (15%)

Query: 135  PAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPP--PSGYPQPSAYAPPPGP--------- 183
            PA   GPA   P     P  PP   G   P PP  P+  P      P             
Sbjct: 2742 PAVPAGPAT--PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLP 2799

Query: 184  -HPYGAPHPAPGPYPYGA-PPNQHPNGP-PPGAHPYGAPPGPPS 224
                 A  PA    P  A PP   P GP PP        P PP 
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 18/87 (20%), Positives = 22/87 (25%), Gaps = 6/87 (6%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
           + A         P +        A   G  P P P+    P+A A P    P      A 
Sbjct: 418 AVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAA 477

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPP 220
                 AP         P       PP
Sbjct: 478 AAPARAAPA------AAPAPADDDPPP 498

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 21/93 (22%), Positives = 25/93 (26%), Gaps = 4/93 (4%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
           G   PA     A + P + P P           P  PP+      A A            
Sbjct: 370 GGAGPA----TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPAR 425

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPP 223
            +P P    A       GP     P  AP   P
Sbjct: 426 RSPAPEALAAARQASARGPGGAPAPAPAPAAAP 458

Length = 700

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 16/64 (25%), Positives = 16/64 (25%)

Query: 160 GGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAP 219
            G     PP G   P A A    P    A   A GP    A              P  AP
Sbjct: 394 PGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAAP 453

Query: 220 PGPP 223
               
Sbjct: 454 QPAV 457

Length = 598

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 22/66 (33%), Positives = 24/66 (36%)

Query: 141 PAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGA 200
           P    PS+      P A     PP  PP+  P     APPP P    AP P P       
Sbjct: 43  PPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 201 PPNQHP 206
           PP   P
Sbjct: 103 PPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 11  LEVTVIACKGLKDTEWLSKQ-DPYV-------------------YGGKNPTFQEKFMFPL 50
           LE+T+ AC+ L   +   K+  PYV                    G  NP F E   + +
Sbjct: 17  LEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVV 76

Query: 51  IHGV---NEMNLVVWNSNTITGDDFIG 74
              +    ++ + VW+S T+    F+G
Sbjct: 77  EADLLSSRQLQVSVWHSRTLKRRVFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV---YGGK------------NPTFQEKFMFPLIHGVN 55
           L++ +   + L   +     DPYV   YGGK            NP + EKF  P+     
Sbjct: 2   LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQ 61

Query: 56  EMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH-AGEVNIIL 110
            + + V++ +    DDF+GS  V L+        +    L   +     G +++++
Sbjct: 62  PLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVV 117

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.84
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.82
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.82
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.81
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.81
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.8
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.8
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.79
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.79
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.79
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.79
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.79
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.77
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.76
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.76
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.75
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.75
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.75
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.74
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.74
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.74
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.73
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.73
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.73
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.73
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.73
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.73
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.72
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.72
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.72
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.71
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.71
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.71
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.71
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.7
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.7
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.69
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.68
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.68
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.68
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.66
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.66
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.66
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.66
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.65
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.65
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.65
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.65
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.65
PLN03008	868	Phospholipase D delta	99.64
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.64
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.64
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.63
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.63
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.62
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.62
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.62
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.62
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.61
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.61
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.61
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.61
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.61
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.61
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.6
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.59
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.58
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.57
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.57
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.57
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.57
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.56
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.55
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.54
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.53
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.5
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.47
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.39
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.37
PLN02270	808	phospholipase D alpha	99.34
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.33
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.29
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.25
PLN02223	537	phosphoinositide phospholipase C	99.2
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.19
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.17
PLN02952	599	phosphoinositide phospholipase C	99.13
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.1
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.07
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.05
PLN02230	598	phosphoinositide phospholipase C 4	99.04
PLN02352	758	phospholipase D epsilon	98.98
PLN02228	567	Phosphoinositide phospholipase C	98.96
PLN02222	581	phosphoinositide phospholipase C 2	98.92
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.91
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.68
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.67
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.66
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.59
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.42
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.24
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.15
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.05
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.98
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.95
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.82
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.82
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.8
PLN02964	644	phosphatidylserine decarboxylase	97.64
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.61
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.54
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.33
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.2
PF15627	156	CEP76-C2: CEP76 C2 domain	97.08
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.91
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.66
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.58
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.19
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.04
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.02
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	95.93
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.92
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.71
KOG1327	529	consensus Copine [Signal transduction mechanisms]	94.87
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.78
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.77
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	94.71
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.45
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	92.95
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.69
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	92.42
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	92.12
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.73
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	89.91
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.29
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	87.49
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	87.29
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	86.65
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	81.21
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	80.41
KOG4027	187	consensus Uncharacterized conserved protein [Funct	80.38

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=1.6e-22  Score=157.12  Aligned_cols=103  Identities=23%  Similarity=0.446  Sum_probs=90.4

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      ++|+|+|++|++|++.+ ++++||||+               ++.||+|||+|.|.|.+....|.|+|||+|.+++|++|
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            68999999999998887 789999997               47899999999999987667899999999999999999


Q ss_pred             eEEEEEchH-hhhcCCCCCceeecCCCC-ccceEEEEEEEE
Q 038128           74 GSGKVQLTK-AITQGYDDNPWPLWTRSG-KHAGEVNIILRC  112 (243)
Q Consensus        74 G~~~i~L~~-l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~~  112 (243)
                      |+++|+|.+ +......+.|+.|..+++ +..|+|+|+|+|
T Consensus        81 G~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            999999964 555555789999987654 578999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.86  E-value=6e-21  Score=146.89  Aligned_cols=102  Identities=30%  Similarity=0.522  Sum_probs=90.7

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~   72 (243)
                      ++|+|+|++|++|+..+..+++||||+               ++.||+|||+|.|.+... ...|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            579999999999999999999999998               367999999999999764 468999999999876 999


Q ss_pred             eeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128           73 IGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC  112 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~  112 (243)
                      ||++.|+|++++.......|+.|. .+++..|+|+|+|+|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~-~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELT-LKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEec-cCCcEeeEEEEEEEC
Confidence            999999999998776678899998 456789999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=6.2e-21  Score=147.70  Aligned_cols=105  Identities=21%  Similarity=0.347  Sum_probs=94.6

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      .|+|+|++|++|...+..+.+||||+               ++.||+|||+|.|.+.+....|+|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            48999999999999999999999998               788999999999999776678999999999998999999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCCCC-ccceEEEEEEEEEe
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTRSG-KHAGEVNIILRCAN  114 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~~g-~~~G~L~l~l~~~~  114 (243)
                      ++.|+|.++........|+.|...++ +..|+|.|+++|.+
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999987777778999986654 68999999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.84  E-value=1.9e-20  Score=146.03  Aligned_cols=101  Identities=24%  Similarity=0.368  Sum_probs=87.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC------CCceEEEEEEecCCCCCC
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH------GVNEMNLVVWNSNTITGD   70 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~------~~~~L~v~V~d~~~~~~d   70 (243)
                      |+|+|++|+||..++..+.+||||+              ++.||+|||+|+|.+.+      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            5799999999999998899999999              68999999999999966      355799999999999889


Q ss_pred             ceeeEEEEEchHhh--hcCCCCCceeecCCCC---ccceEEEEEEE
Q 038128           71 DFIGSGKVQLTKAI--TQGYDDNPWPLWTRSG---KHAGEVNIILR  111 (243)
Q Consensus        71 ~~IG~~~i~L~~l~--~~~~~~~~~~L~~~~g---~~~G~L~l~l~  111 (243)
                      ++||++.|+|+++.  .......||.|..+.+   +..|+|+|+|.
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  3344568999986443   46799999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.82  E-value=1.8e-19  Score=140.83  Aligned_cols=106  Identities=26%  Similarity=0.358  Sum_probs=90.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCCCCCCc
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNTITGDD   71 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~~~~d~   71 (243)
                      +.+.|+|+|++|+||+.++   .+||||+              ++.||.|||+|.|.+.... ..|+|+|||++.+++|+
T Consensus         2 ~~~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVKH---VPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             ceeEEEEEEEEeeCCCCCC---CCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            3568999999999998753   6899999              6789999999999975443 57999999999999999


Q ss_pred             eeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEec
Q 038128           72 FIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANV  115 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~  115 (243)
                      +||++.|+|+++........|+.|...+   .+..|+|+|+|+|.+.
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            9999999999988777678899998653   3567999999999874

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.82  E-value=1.7e-19  Score=140.78  Aligned_cols=105  Identities=21%  Similarity=0.367  Sum_probs=92.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      |.|+|++|+||..  ..+++||||+                ++.||+|||+|.|.+......|.|+|||++.+++|+|||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            6899999999987  6789999997                678999999999999766678999999999998899999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEecCC
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANVWN  117 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~~~  117 (243)
                      ++.|+|.++........||.|..+.   .+..|+|.|++.|.+..+
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~  124 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE  124 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence            9999999998777677899998652   457999999999987643

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=1.6e-19  Score=140.17  Aligned_cols=103  Identities=19%  Similarity=0.291  Sum_probs=89.9

Q ss_pred             eEEEEEEEeeCCCCCC-CCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128           10 PLEVTVIACKGLKDTE-WLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~-~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      .|+|+|++|+||..++ ..+.+||||+               ++.||+|||+|+|.+.+....|.|+|||++.+++|++|
T Consensus         1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~i   80 (121)
T cd08401           1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVI   80 (121)
T ss_pred             CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceE
Confidence            3789999999999864 4578999999               78999999999999987667999999999999999999


Q ss_pred             eEEEEEchHhhhcCCCCCceeecCC--CCccceEEEEEEEE
Q 038128           74 GSGKVQLTKAITQGYDDNPWPLWTR--SGKHAGEVNIILRC  112 (243)
Q Consensus        74 G~~~i~L~~l~~~~~~~~~~~L~~~--~g~~~G~L~l~l~~  112 (243)
                      |++.|.|+++........||.|...  +++..|+|+|+++|
T Consensus        81 G~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          81 GKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            9999999998876667789999853  34568999999876

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=2.3e-19  Score=139.19  Aligned_cols=102  Identities=22%  Similarity=0.443  Sum_probs=89.2

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      +|+|+|++|++|..++..+.+||||+              ++.||+|||+|.|.+.+. ...|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            58999999999999998889999998              788999999999999765 457999999999998999999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCC------CCccceEEEEEEE
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTR------SGKHAGEVNIILR  111 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~------~g~~~G~L~l~l~  111 (243)
                      ++.++|.++........|+.|...      +++..|.|+|.|+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            999999998776667789998852      4457899988874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.6e-19  Score=144.13  Aligned_cols=108  Identities=20%  Similarity=0.251  Sum_probs=92.4

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------C-CCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCcee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------G-GKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~-~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~I   73 (243)
                      .|+|+|++|++|..++..+++||||+              + +.||+|||+|+|.+.+. ...|.|+|||++.+++|++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            48999999999999999999999999              3 68999999999999754 45899999999988889999


Q ss_pred             eEEEEEchHhhhc----CCCCCceeecCCCC--------ccceEEEEEEEEEecCC
Q 038128           74 GSGKVQLTKAITQ----GYDDNPWPLWTRSG--------KHAGEVNIILRCANVWN  117 (243)
Q Consensus        74 G~~~i~L~~l~~~----~~~~~~~~L~~~~g--------~~~G~L~l~l~~~~~~~  117 (243)
                      |++.|+|+++...    .....||.|....+        +..|+|+|+|+|....+
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            9999999998643    23468999986543        56799999999997655

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=2.2e-19  Score=140.25  Aligned_cols=104  Identities=20%  Similarity=0.309  Sum_probs=89.4

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC----CceEEEEEEecCCCC-CC
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTIT-GD   70 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~-~d   70 (243)
                      +|+|+|++|++|...+..+.+||||+              ++.||+|||+|.|.+.+.    ...|+|+|||++.++ +|
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            58999999999999998889999998              789999999999999643    247999999999886 79


Q ss_pred             ceeeEEEEEchHhhh-cCCCCCceeecCCC--CccceEEEEEEEEE
Q 038128           71 DFIGSGKVQLTKAIT-QGYDDNPWPLWTRS--GKHAGEVNIILRCA  113 (243)
Q Consensus        71 ~~IG~~~i~L~~l~~-~~~~~~~~~L~~~~--g~~~G~L~l~l~~~  113 (243)
                      +|||++.|+|+++.. ......||.|..+.  ++.+|+|+|++.|+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            999999999999873 34456899998653  35799999999886

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.81  E-value=3.3e-19  Score=139.91  Aligned_cols=104  Identities=26%  Similarity=0.415  Sum_probs=90.6

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCC
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTIT   68 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~   68 (243)
                      +|+|+|++|++|..++..+++||||+                     ++.||+|||+|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            58999999999999998899999986                     567999999999999776678999999999998


Q ss_pred             CCceeeEEEEEchHhhhcCC------CCCceeecCC--CCccceEEEEEEEEE
Q 038128           69 GDDFIGSGKVQLTKAITQGY------DDNPWPLWTR--SGKHAGEVNIILRCA  113 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~~------~~~~~~L~~~--~g~~~G~L~l~l~~~  113 (243)
                      +|++||++.|+|.++.....      ...||.|...  .++..|+|+|+++|.
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            99999999999999876532      3489999854  346799999999983

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2.4e-19  Score=140.30  Aligned_cols=99  Identities=21%  Similarity=0.426  Sum_probs=86.8

Q ss_pred             eEEEEEEEeeC---CCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCC----
Q 038128           10 PLEVTVIACKG---LKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTIT----   68 (243)
Q Consensus        10 ~L~V~V~~A~~---L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~----   68 (243)
                      .|+|+|++|++   |..++..+++||||+              +++||+|||+|.|.+.+....|+|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999   888999999999999              688999999999999876678999999999873    


Q ss_pred             --CCceeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEE
Q 038128           69 --GDDFIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNI  108 (243)
Q Consensus        69 --~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l  108 (243)
                        +|++||++.|+|.++..+.....||.|...+   .+..|+|++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence              7999999999999988777778999998654   356788765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=4.5e-19  Score=137.97  Aligned_cols=104  Identities=23%  Similarity=0.455  Sum_probs=89.9

Q ss_pred             ceEEEEEEEeeCCCCCCC--CCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCc
Q 038128            9 QPLEVTVIACKGLKDTEW--LSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDD   71 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~--~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~   71 (243)
                      +.|+|+|++|++|...+.  .+.+||||+              ++.||+|||+|.|.+.+ ....|+|+|||++.+++|+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            579999999999999888  889999998              78999999999999976 4668999999999998899


Q ss_pred             eeeEEEEEchHhhh---cCCCCCceeecCCC----CccceEEEEEEEE
Q 038128           72 FIGSGKVQLTKAIT---QGYDDNPWPLWTRS----GKHAGEVNIILRC  112 (243)
Q Consensus        72 ~IG~~~i~L~~l~~---~~~~~~~~~L~~~~----g~~~G~L~l~l~~  112 (243)
                      +||+++|.|.++..   ......|+.|..++    .+..|+|+|+++|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            99999999999874   23346899998653    2478999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=4.3e-19  Score=136.08  Aligned_cols=100  Identities=22%  Similarity=0.362  Sum_probs=88.9

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      .|+|+|++|++|...+..+.+||||+              ++.||+|||+|.|.+.+. ...|+|+|||++.+++|++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            48999999999999998899999998              789999999999999765 568999999999998999999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      ++.+.|+++........|+.|...    .|+|++.++|.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~----~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDG----EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCC----CcEEEEEEEec
Confidence            999999998877777789999742    59999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.80  E-value=5.9e-19  Score=136.45  Aligned_cols=106  Identities=28%  Similarity=0.389  Sum_probs=89.0

Q ss_pred             ceEEEEEEEeeCCCCCCC-CCCCCcEEe----------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCc
Q 038128            9 QPLEVTVIACKGLKDTEW-LSKQDPYVY----------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDD   71 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~-~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~   71 (243)
                      +.|+|+|++|++|+..+. .+.+||||+                ++.||+|||+|.|.+.+....|.|+|||++.+++|+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            579999999999997653 456899986                667999999999999866778999999999998899


Q ss_pred             eeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128           72 FIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      +||+++++|.++........++.....+++..|+|+|+|+|.+
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            9999999999998776554444333467788999999999964

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.80  E-value=1.6e-18  Score=133.28  Aligned_cols=102  Identities=20%  Similarity=0.364  Sum_probs=89.5

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      +.|+|+|++|++|..++..+.+||||+              ++.||.|||+|.|.+.+....|.|+|||++.++++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            579999999999999998899999998              678999999999999776778999999999988899999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCCC--CccceEEEEEEEE
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTRS--GKHAGEVNIILRC  112 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~~--g~~~G~L~l~l~~  112 (243)
                      ++.++|.++...  ...|+.|....  .+..|+|.|++.|
T Consensus        81 ~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            999999987543  35799988653  3579999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.80  E-value=1.8e-18  Score=137.10  Aligned_cols=102  Identities=21%  Similarity=0.327  Sum_probs=86.2

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~   72 (243)
                      .+.|+|+|++|++|...+..+++||||+              ++.||.|||+|+|.+.+. ...|.|+|||++.+++|++
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~   93 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDF   93 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCe
Confidence            4689999999999999999999999998              789999999999999764 4579999999999989999


Q ss_pred             eeEEEEEchHhhhcCC--CC---CceeecCCCCccceEEEEEEEE
Q 038128           73 IGSGKVQLTKAITQGY--DD---NPWPLWTRSGKHAGEVNIILRC  112 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~--~~---~~~~L~~~~g~~~G~L~l~l~~  112 (243)
                      ||++.|.|.+++....  ..   .|+.|   +++.+|+|+|+|+|
T Consensus        94 lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          94 LGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             eEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence            9999999999886321  12   22333   46778999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.79  E-value=1.1e-18  Score=141.58  Aligned_cols=108  Identities=18%  Similarity=0.337  Sum_probs=92.7

Q ss_pred             CccCceEEEEEEEeeCCCCCC------------------------------CCCCCCcEEe---------------CCCC
Q 038128            5 NVQGQPLEVTVIACKGLKDTE------------------------------WLSKQDPYVY---------------GGKN   39 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~------------------------------~~g~~dPYv~---------------~~~n   39 (243)
                      -+..++|+|+|++|++|.++|                              ..+++||||+               ++.|
T Consensus         3 ~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~n   82 (158)
T cd04015           3 VLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSEN   82 (158)
T ss_pred             eEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCC
Confidence            356899999999999999887                              2456899999               6789


Q ss_pred             CcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC---ccceEEEEEEEEE
Q 038128           40 PTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG---KHAGEVNIILRCA  113 (243)
Q Consensus        40 P~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g---~~~G~L~l~l~~~  113 (243)
                      |+|||+|.|.+.+....|+|+|||++.++ +++||++.|+|+++......+.|+.|....+   +..++|+|+++|.
T Consensus        83 P~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          83 PVWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             CccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            99999999999877778999999999885 7899999999999987777789999986544   3568999999984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.79  E-value=1.7e-18  Score=134.29  Aligned_cols=102  Identities=22%  Similarity=0.309  Sum_probs=88.5

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      .|.|+|++|++|..++..+++||||+               ++.||+|||+|.|.+.+....|.|+|||++.+++|++||
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG   80 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIG   80 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEE
Confidence            48999999999999999999999997               788999999999999876778999999999999999999


Q ss_pred             EEEEEchHhhhcC-CCCCceeecCC--CCccceEEEEEEE
Q 038128           75 SGKVQLTKAITQG-YDDNPWPLWTR--SGKHAGEVNIILR  111 (243)
Q Consensus        75 ~~~i~L~~l~~~~-~~~~~~~L~~~--~g~~~G~L~l~l~  111 (243)
                      ++.+.++++.... ....|+.|...  .++..|+|+|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          81 KVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            9999999886532 35689999753  3457899999876

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.79  E-value=1.2e-18  Score=134.47  Aligned_cols=100  Identities=22%  Similarity=0.303  Sum_probs=86.7

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~   71 (243)
                      .|+|+|++|++|+..+..+++||||+                 ++.||+|||+|.|.+... ...|+|+|||++.+ +|+
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~   79 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDD   79 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCc
Confidence            48999999999999988899999998                 567999999999999654 44799999999998 899


Q ss_pred             eeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128           72 FIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      +||++.++|.++........|+.|..   +.+|+|++++.++
T Consensus        80 ~iG~~~~~l~~l~~g~~~~~~~~L~~---~~~g~l~~~~~~~  118 (119)
T cd04036          80 HLGTVLFDVSKLKLGEKVRVTFSLNP---QGKEELEVEFLLE  118 (119)
T ss_pred             ccEEEEEEHHHCCCCCcEEEEEECCC---CCCceEEEEEEee
Confidence            99999999999877766778999874   2578888888774

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.79  E-value=4.6e-19  Score=142.49  Aligned_cols=84  Identities=26%  Similarity=0.447  Sum_probs=77.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ..+.|+|+|++|.||..+|+.+++||||+              +++||+|||+|+|.|.+....|+++|||+|.|+.|||
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~   83 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF   83 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence            35789999999999999999899999999              8999999999999999999999999999999999999


Q ss_pred             eeEEEEEchHhhhcCCCC
Q 038128           73 IGSGKVQLTKAITQGYDD   90 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~   90 (243)
                      ||+++|+|..++......
T Consensus        84 mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   84 MGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             cceeeeccHHHHHHhhhh
Confidence            999999999998765433

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=1.7e-18  Score=134.43  Aligned_cols=98  Identities=24%  Similarity=0.429  Sum_probs=84.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCceeeE
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDDFIGS   75 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~~IG~   75 (243)
                      |+|+|++|+||..+    ++||||+              ++.||+|||+|+|.+.+ ....|+|+|||++.+ +|++||+
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            89999999999877    6899998              68899999999999876 456899999999987 7999999


Q ss_pred             EEEEchHhhhcC-----CCCCceeecCCCC-ccceEEEEEEEEE
Q 038128           76 GKVQLTKAITQG-----YDDNPWPLWTRSG-KHAGEVNIILRCA  113 (243)
Q Consensus        76 ~~i~L~~l~~~~-----~~~~~~~L~~~~g-~~~G~L~l~l~~~  113 (243)
                      +.|+|+++....     ....||.|...++ +.+|+|+|+|.|.
T Consensus        77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            999999986543     2358999987654 7889999999984

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.79  E-value=1e-18  Score=135.77  Aligned_cols=99  Identities=30%  Similarity=0.491  Sum_probs=88.1

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-----CceEEEEEEecCCCC
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-----VNEMNLVVWNSNTIT   68 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-----~~~L~v~V~d~~~~~   68 (243)
                      +|+|+|++|++|...+..+++||||+                ++.||+|||+|.|.+.+.     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            58999999999999998899999998                367999999999999765     468999999999988


Q ss_pred             CCceeeEEEEEchHhhhcCCC-----CCceeecCCCCccceEEEE
Q 038128           69 GDDFIGSGKVQLTKAITQGYD-----DNPWPLWTRSGKHAGEVNI  108 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~~~-----~~~~~L~~~~g~~~G~L~l  108 (243)
                      +|++||++.|+|.+++.....     ..||.|...+++..|.|+|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            899999999999999876543     5789999888999999875

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.77  E-value=5.2e-18  Score=130.58  Aligned_cols=100  Identities=24%  Similarity=0.394  Sum_probs=86.9

Q ss_pred             ceEEEEEEEeeCCCCCCC------CCCCCcEEe--------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCC
Q 038128            9 QPLEVTVIACKGLKDTEW------LSKQDPYVY--------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTI   67 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~------~g~~dPYv~--------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~   67 (243)
                      +.|+|+|++|+||...+.      .+.+||||+              ++.||+|||+|.|.+.+ ....|+|+|||++.+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998774      357999998              78899999999999965 456899999999988


Q ss_pred             CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128           68 TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC  112 (243)
Q Consensus        68 ~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~  112 (243)
                       +|++||++.|+|.++...+....||.|...   ..|+|+|+++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---KSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCC---CCceEEEEEeC
Confidence             899999999999999877777889999742   67999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.76  E-value=1.4e-17  Score=130.91  Aligned_cols=101  Identities=23%  Similarity=0.391  Sum_probs=87.8

Q ss_pred             CceEEEEEEEeeCCCCCCCC----------CCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEE
Q 038128            8 GQPLEVTVIACKGLKDTEWL----------SKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVW   62 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~----------g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~   62 (243)
                      .+.|+|+|++|++|...+..          +.+||||+               ++.||+|||+|+|.+. ..+.|.|+||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence            46799999999999988762          57999999               6889999999999997 4578999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhh--cCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128           63 NSNTITGDDFIGSGKVQLTKAIT--QGYDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~--~~~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      |++.+++|++||++.|.|+++..  ......|+.|.     ..|+|+|+++|.-
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-----~~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-----PQGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-----CCcEEEEEEEEec
Confidence            99988889999999999999887  34567899996     4699999999875

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.76  E-value=6.7e-18  Score=131.28  Aligned_cols=89  Identities=26%  Similarity=0.413  Sum_probs=78.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eC---CCceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IH---GVNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~---~~~~L~v~V~   62 (243)
                      ...++|+|+|++|+||..++ .+.+||||+                   ++.||+|||+|+|.+ ..   ....|+|+||
T Consensus        10 y~~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~   88 (122)
T cd08381          10 YKNGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW   88 (122)
T ss_pred             EeCCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence            34789999999999999999 889999999                   778999999999997 32   2457999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL   95 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L   95 (243)
                      |++.+++|++||++.|+|.++........||.|
T Consensus        89 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          89 SHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             eCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            999999999999999999998876666788876

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.75  E-value=1e-17  Score=130.82  Aligned_cols=104  Identities=22%  Similarity=0.395  Sum_probs=88.2

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      ...|+|+|++|++|...+..+++||||+              ++.||+|||+|.|.+.+....|+|+|||++.+ +|++|
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~l   80 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEFL   80 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCce
Confidence            3579999999999999999999999998              78999999999999987777899999999987 58999


Q ss_pred             eEEEEEchHhhhcCCCCCceeecC----CCCccceEEEEEEEEEe
Q 038128           74 GSGKVQLTKAITQGYDDNPWPLWT----RSGKHAGEVNIILRCAN  114 (243)
Q Consensus        74 G~~~i~L~~l~~~~~~~~~~~L~~----~~g~~~G~L~l~l~~~~  114 (243)
                      |++++.+.++.  .....+|.|..    .+++..|+|.|++++.+
T Consensus        81 G~~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          81 GQATLSADPND--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             EEEEEecccCC--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            99999998743  33456777753    34578999999998765

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.75  E-value=9e-18  Score=134.48  Aligned_cols=93  Identities=22%  Similarity=0.368  Sum_probs=80.8

Q ss_pred             cCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEE-ecC
Q 038128            7 QGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVW-NSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~-d~~   65 (243)
                      +.+.|+|+|++|+||...+ ..+.+||||+                   +++||+|||+|+|.+......|.|+|| |++
T Consensus        27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~  106 (146)
T cd04028          27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence            5689999999999998764 5678999999                   789999999999999866668999999 678


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      .+++++|||++.|+|+++........||.|....
T Consensus       107 ~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~  140 (146)
T cd04028         107 RMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTS  140 (146)
T ss_pred             CCCCCceEEEEEEEcccccCCCCceeEEecCCcc
Confidence            8888999999999999986666667899998543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.75  E-value=4.4e-18  Score=131.15  Aligned_cols=89  Identities=13%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      +....+.|+|+|++|+||+   ..+.+||||+                  +++||+|||+|.|.|...   ...|.|+||
T Consensus         9 Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~   85 (118)
T cd08677           9 YDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR   85 (118)
T ss_pred             EcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence            3557889999999999998   2466999999                  799999999999999643   447999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL   95 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L   95 (243)
                      |+|++++|++||++.+.|+++........|.+|
T Consensus        86 d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          86 CCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             eCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            999999999999999999987555444556543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.75  E-value=1.7e-17  Score=129.01  Aligned_cols=101  Identities=15%  Similarity=0.302  Sum_probs=84.8

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCC--Cce
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITG--DDF   72 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~--d~~   72 (243)
                      .|+|+|++|++|..++.++++||||+               ++.||+|||+|+|.+.. ...|+|+|||++.+++  |+|
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence            48999999999999999999999998               78899999999999975 6789999999998875  579


Q ss_pred             eeEEEEEchHhhhcCCC-CCceeecCCC----CccceEEEEEEE
Q 038128           73 IGSGKVQLTKAITQGYD-DNPWPLWTRS----GKHAGEVNIILR  111 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~-~~~~~L~~~~----g~~~G~L~l~l~  111 (243)
                      ||++.|+|++++..... ..|+.|...+    +...|+|.++++
T Consensus        80 lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~~  123 (123)
T cd08382          80 LGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSLS  123 (123)
T ss_pred             EeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEeC
Confidence            99999999998765433 5688886443    345788888763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=2.9e-17  Score=127.72  Aligned_cols=102  Identities=18%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~   71 (243)
                      +|+|+|++|++|...+..++.||||+                 ++.||+|||+|.|.+... ...|.|+|||++.+++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            68999999999999998899999997                 578999999999999764 568999999999988899


Q ss_pred             eeeEEEEEchHhhhcC---CCCCceeecCCCCccceEEEEEEEEEecC
Q 038128           72 FIGSGKVQLTKAITQG---YDDNPWPLWTRSGKHAGEVNIILRCANVW  116 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~---~~~~~~~L~~~~g~~~G~L~l~l~~~~~~  116 (243)
                      +||++.+.|.++....   ....|+.|.     ..|+|+|++.+..++
T Consensus        82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~-----~~g~i~l~~~~~~~~  124 (126)
T cd04043          82 LCGRASLKLDPKRFGDDGLPREIWLDLD-----TQGRLLLRVSMEGER  124 (126)
T ss_pred             eEEEEEEecCHHHcCCCCCCceEEEEcC-----CCCeEEEEEEEeeec
Confidence            9999999999875432   345788886     368999999887654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.75  E-value=1e-17  Score=134.61  Aligned_cols=89  Identities=29%  Similarity=0.434  Sum_probs=75.5

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC--------------C--C
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH--------------G--V   54 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~--------------~--~   54 (243)
                      +|+|+|++|+||..  ..+.+||||+                   ++.||+|||+|+|.+..              .  .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            58999999999987  4678999988                   67899999999999941              1  2


Q ss_pred             ceEEEEEEecCCCCCCceeeEEEEEchHhhhc-CCCCCceeecCCCC
Q 038128           55 NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQ-GYDDNPWPLWTRSG  100 (243)
Q Consensus        55 ~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~-~~~~~~~~L~~~~g  100 (243)
                      ..|+|+|||++.+++|+|||++.|+|.++... .....||.|..++.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~  125 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE  125 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence            36999999999988999999999999998776 56678999986543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=2.9e-17  Score=128.11  Aligned_cols=101  Identities=22%  Similarity=0.352  Sum_probs=88.6

Q ss_pred             EEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC---CCceEEEEEEecCCCCCCceeeEEE
Q 038128           15 VIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWNSNTITGDDFIGSGK   77 (243)
Q Consensus        15 V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d~~~~~~d~~IG~~~   77 (243)
                      |++|++|..  +.+++||||+              ++.||+|||+|.|.+.+   ....|+|+|||++.+++|++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999998  6789999998              77899999999999964   3568999999999998999999999


Q ss_pred             EEchHhhhcCCCCCceeecCCCCc-cceEEEEEEEEEecCC
Q 038128           78 VQLTKAITQGYDDNPWPLWTRSGK-HAGEVNIILRCANVWN  117 (243)
Q Consensus        78 i~L~~l~~~~~~~~~~~L~~~~g~-~~G~L~l~l~~~~~~~  117 (243)
                      ++|.++........|+.|...+++ ..|+|+|+++|.+...
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDG  120 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence            999999887777789999866554 5799999999999765

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=2.9e-17  Score=128.37  Aligned_cols=99  Identities=25%  Similarity=0.489  Sum_probs=84.3

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC--------
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI--------   67 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~--------   67 (243)
                      +|+|+|++|++|...+..+++||||+              ++.||+|||+|.|.+......|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            68999999999999999999999998              78999999999999976667899999999852        


Q ss_pred             ---CCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEE
Q 038128           68 ---TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIIL  110 (243)
Q Consensus        68 ---~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l  110 (243)
                         ++|++||++.|+|.++.  +....|+.|..++.  +..|+|+|+|
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence               46999999999999863  34568999986543  4789998875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=1.4e-17  Score=129.18  Aligned_cols=87  Identities=24%  Similarity=0.287  Sum_probs=76.1

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC----CceEEEEEEec
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNS   64 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~   64 (243)
                      +|+|+|++|++|...+ .+.+||||+                     +++||+|||+|+|.+.+.    ...|.|+|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            5899999999999887 489999998                     677999999999999642    23699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +.+++|++||++.|+|.++...+....|+.|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            988889999999999999987777778988874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.74  E-value=3.5e-17  Score=127.09  Aligned_cols=91  Identities=34%  Similarity=0.606  Sum_probs=81.9

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC----CceEEEEEEecCCCCC
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTITG   69 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~~   69 (243)
                      ++|+|+|++|++|+..+..+++||||+               ++.||+|||+|.|.+...    ...|.|+|||++.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            579999999999999998899999998               378999999999999765    4679999999999988


Q ss_pred             CceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           70 DDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        70 d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      |++||++.|+|.+++..+....|+.|..+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            999999999999999888888999998643

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.73  E-value=2e-17  Score=128.49  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=80.8

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecCC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNT   66 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~   66 (243)
                      ..+.|+|+|++|+||..++..+.+||||+                 ++.||+|||+|.|.+...   ...|+|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            46789999999999999999999999997                 778999999999998643   4579999999999


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      +++|++||++.|.|+++......+.|+.|.
T Consensus        94 ~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          94 FSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCceeEEEEEecccccCCCCcceEEECc
Confidence            989999999999999998777778899886

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.73  E-value=2.1e-17  Score=128.96  Aligned_cols=91  Identities=26%  Similarity=0.449  Sum_probs=79.0

Q ss_pred             ccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ...+.|+|+|++|+||..++.. +.+||||+                   ++.||+|||+|.|.+...   ...|.|+||
T Consensus        12 ~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            3457899999999999999875 78999998                   778999999999998642   357999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      |++.++++++||++.|+|.++........||.|.
T Consensus        92 d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          92 HRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999986666667888873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.73  E-value=2.5e-17  Score=127.83  Aligned_cols=91  Identities=24%  Similarity=0.327  Sum_probs=80.6

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ...++|+|+|++|+||..++..+.+||||+                 ++.||+|||+|.|.+...   ...|+|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            467899999999999999998899999998                 678999999999998642   457999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      .+++|++||++.|+|+++........|++|.
T Consensus        93 ~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          93 RFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            9989999999999999987766677898885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.73  E-value=6.4e-17  Score=125.40  Aligned_cols=90  Identities=22%  Similarity=0.384  Sum_probs=81.3

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      +.|+|+|++|++|...+..+++||||+               ++.||+|||+|.|.+.+....|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            579999999999999998899999998               67899999999999987777999999999999999999


Q ss_pred             eEEEEEchHhhhcCCCCCceeecCCC
Q 038128           74 GSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        74 G~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      |++++.|.+++.. ..+.||.|.+.+
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~~~  105 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYDDE  105 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecCCC
Confidence            9999999999876 567899888644

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.73  E-value=5.2e-17  Score=128.23  Aligned_cols=105  Identities=17%  Similarity=0.346  Sum_probs=85.9

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC----------CCceEEEEEEecC
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH----------GVNEMNLVVWNSN   65 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~----------~~~~L~v~V~d~~   65 (243)
                      .|+|+|++|++|..++..+++||||+              ++.||+|||+|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            58999999999999999999999997              78999999999998532          1246999999999


Q ss_pred             CCCCCceeeEEEE-EchHhhhc---CCCCCceeecCCCCccceEEEEEEEEEec
Q 038128           66 TITGDDFIGSGKV-QLTKAITQ---GYDDNPWPLWTRSGKHAGEVNIILRCANV  115 (243)
Q Consensus        66 ~~~~d~~IG~~~i-~L~~l~~~---~~~~~~~~L~~~~g~~~G~L~l~l~~~~~  115 (243)
                      .+++|++||++.+ ++..+...   .....|+.|. +.++..|+|.|++.+.+.
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIY-KGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCCCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence            9999999999987 33333221   3345799997 556789999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.73  E-value=3.1e-17  Score=128.04  Aligned_cols=91  Identities=23%  Similarity=0.471  Sum_probs=79.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCC-CCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEW-LSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~-~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      -..++|+|+|++|+||...+. .+.+||||+                   ++.||+|||+|.|.|...   ...|+|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            367889999999999998764 478999998                   678999999999999642   457999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      |++.++++++||++.|.|.++........|+.|.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9999999999999999999987777778898873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.72  E-value=2.6e-17  Score=127.49  Aligned_cols=89  Identities=24%  Similarity=0.386  Sum_probs=76.7

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEec
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNS   64 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~   64 (243)
                      ...+.|+|+|++|+||..++ .+.+||||+                   ++.||+|||+|.|.+...  ...|.|+|||+
T Consensus         9 ~~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~   87 (119)
T cd08685           9 GQNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK   87 (119)
T ss_pred             EcCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence            46789999999999999988 788999999                   678999999999998643  34689999999


Q ss_pred             CCCC-CCceeeEEEEEchHhhhcCCCCCceee
Q 038128           65 NTIT-GDDFIGSGKVQLTKAITQGYDDNPWPL   95 (243)
Q Consensus        65 ~~~~-~d~~IG~~~i~L~~l~~~~~~~~~~~L   95 (243)
                      +..+ ++++||++.|+|.++........||.|
T Consensus        88 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          88 LSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            8875 478999999999999866666788875

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.72  E-value=4.2e-17  Score=124.75  Aligned_cols=98  Identities=26%  Similarity=0.400  Sum_probs=85.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      |+|+|++|++|...+..+++||||+               ++.+|+|||+|.|.+.+. .+.|.|+|||++.++++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            6899999999999988889999998               778999999999999764 568999999999998999999


Q ss_pred             EEEEEchHhhhcCCCCCceeecCCCCccceEEEE
Q 038128           75 SGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNI  108 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l  108 (243)
                      ++.+.|.++........|+.|..+.+...|.|.|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCCccCceEEc
Confidence            9999999988776677889998766677777654

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.72  E-value=5.5e-17  Score=126.39  Aligned_cols=85  Identities=22%  Similarity=0.285  Sum_probs=73.8

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS   75 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~   75 (243)
                      +.|.|+|++|++|..++   ..||||+             ++.||+|||+|.|.+.+....|+|+|||++.+ +|||||+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence            47999999999997755   3589999             55799999999999988777899999999977 7999999


Q ss_pred             EEEEchHhhhcCCC--CCceeecC
Q 038128           76 GKVQLTKAITQGYD--DNPWPLWT   97 (243)
Q Consensus        76 ~~i~L~~l~~~~~~--~~~~~L~~   97 (243)
                      +.|+|+++..+...  ..||.|..
T Consensus        78 v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          78 VWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             EEEEhHHcccCCCCCCCccEecCh
Confidence            99999999876554  68998884

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.71  E-value=5e-17  Score=127.51  Aligned_cols=90  Identities=27%  Similarity=0.416  Sum_probs=77.3

Q ss_pred             ccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ...++|+|+|++|+||..++.. +.+||||+                   ++.||+|||+|.|.|...   ...|.|+||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~   91 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVW   91 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence            3568999999999999998875 88999999                   678999999999998643   458999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcC---CCCCceee
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQG---YDDNPWPL   95 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~---~~~~~~~L   95 (243)
                      |.+.++++++||++.|+|.++....   ....||.|
T Consensus        92 ~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l  127 (128)
T cd08392          92 HSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL  127 (128)
T ss_pred             eCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence            9999999999999999999985442   34578877

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.71  E-value=7.2e-17  Score=123.23  Aligned_cols=85  Identities=25%  Similarity=0.402  Sum_probs=73.5

Q ss_pred             ceEEEEEEEeeCCCCCCCC-CCCCcEEe-----------------CCCCCcccceEEEEeeCC----CceEEEEEEecCC
Q 038128            9 QPLEVTVIACKGLKDTEWL-SKQDPYVY-----------------GGKNPTFQEKFMFPLIHG----VNEMNLVVWNSNT   66 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~-g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~   66 (243)
                      ++|+|+|++|++|...+.. +++||||+                 ++.||+|||+|.|.+...    ...|+|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            5899999999999999987 89999998                 678999999999988542    4579999999999


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      +++|++||+++|+|.+|+.   ...|+.+.
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence            9999999999999999874   33566554

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.71  E-value=6.3e-17  Score=126.28  Aligned_cols=91  Identities=15%  Similarity=0.264  Sum_probs=77.9

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC---CceEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG---VNEMNLVV   61 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V   61 (243)
                      ....+.|+|+|++|+||...+..+.+|+||+                    ++.||+|||+|+|.|...   ...|.|+|
T Consensus        10 ~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V   89 (124)
T cd08680          10 DSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDV   89 (124)
T ss_pred             CCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEE
Confidence            4467899999999999999888888999999                    678999999999999643   45899999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcC-CCCCceee
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQG-YDDNPWPL   95 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L   95 (243)
                      ||.+.++++++||++.|.|.++.... ....||.|
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999984443 35678765

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.71  E-value=8.4e-17  Score=122.65  Aligned_cols=87  Identities=22%  Similarity=0.351  Sum_probs=76.0

Q ss_pred             EEEEEEEeeCCCCCCC-CCCCCcEEe--------------CCCCCcc-cceEEEEeeCC---CceEEEEEEecCCCCCCc
Q 038128           11 LEVTVIACKGLKDTEW-LSKQDPYVY--------------GGKNPTF-QEKFMFPLIHG---VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~-~g~~dPYv~--------------~~~nP~W-nE~f~f~i~~~---~~~L~v~V~d~~~~~~d~   71 (243)
                      |+|+|++|++|+.++. .+.+||||+              ++.||+| ||+|.|.+...   .+.|+|+|||++.+++|+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6899999999998874 678999998              7889999 99999999653   358999999999999999


Q ss_pred             eeeEEEEEchHhhhc---CCCCCceeecC
Q 038128           72 FIGSGKVQLTKAITQ---GYDDNPWPLWT   97 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~---~~~~~~~~L~~   97 (243)
                      +||++.++|.++...   ...+.||.|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            999999999999873   34678999874

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=1.1e-16  Score=124.04  Aligned_cols=90  Identities=23%  Similarity=0.406  Sum_probs=76.3

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC----CCceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH----GVNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~   62 (243)
                      ...++|+|+|++|++|...+..+.+||||+                   ++.||+|||+|.|.+..    ....|+|+||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~   92 (125)
T cd04031          13 KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW   92 (125)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence            356789999999999999998889999997                   68899999999999643    2457999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      |++.+++|++||+++|+|++.. ......||.|.
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             eCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            9999988999999999999843 33346788874

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=1e-16  Score=123.96  Aligned_cols=90  Identities=22%  Similarity=0.475  Sum_probs=78.8

Q ss_pred             ccCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ...+.|+|+|++|+||...+ ..+.+||||+                   ++.||+|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            35789999999999999988 7788999997                   678999999999998653   457999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL   95 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L   95 (243)
                      |++.++++++||++.|.|.++........||.|
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             eCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            999999999999999999998766666788876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=1.2e-16  Score=120.76  Aligned_cols=85  Identities=26%  Similarity=0.355  Sum_probs=75.0

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceee
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      +|.|+|++|++|+..+..+.+||||+              ++.||+|||+|.|.+.+. ...|+|+|||++.   |++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            58999999999999888899999999              778999999999999864 5689999999985   88999


Q ss_pred             EEEEEchHhhhcC--CCCCceeecC
Q 038128           75 SGKVQLTKAITQG--YDDNPWPLWT   97 (243)
Q Consensus        75 ~~~i~L~~l~~~~--~~~~~~~L~~   97 (243)
                      ++.|+|.++....  ..+.||.|..
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999998664  3468999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=2.4e-16  Score=127.35  Aligned_cols=106  Identities=19%  Similarity=0.339  Sum_probs=86.8

Q ss_pred             eEEEEEEEeeC--CCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---------CceEEE
Q 038128           10 PLEVTVIACKG--LKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---------VNEMNL   59 (243)
Q Consensus        10 ~L~V~V~~A~~--L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---------~~~L~v   59 (243)
                      .++|+|+.|++  |...+..+..||||+                   +++||+|||+|.|.|...         ...|+|
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            45677777777  556666678999998                   789999999999999644         235999


Q ss_pred             EEEecCCC-CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEec
Q 038128           60 VVWNSNTI-TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANV  115 (243)
Q Consensus        60 ~V~d~~~~-~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~~  115 (243)
                      +|||++.| ++|++||++.|+|+.+........|++|+.......|+|+|++++.+.
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            99999986 479999999999999877666677999986555678999999999874

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.70  E-value=1.3e-16  Score=124.07  Aligned_cols=91  Identities=27%  Similarity=0.358  Sum_probs=79.1

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...+.|+|+|++|+||...+..+.+||||+                   ++.||+|||+|.|.+...   ...|+|+|||
T Consensus        13 ~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          13 SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            356899999999999999998899999998                   678999999999998543   3579999999


Q ss_pred             cCCC--CCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           64 SNTI--TGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~--~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      ++.+  ++|++||++.|.|+++........||.|.
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            9875  67999999999999987766677898874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.69  E-value=1.5e-16  Score=123.96  Aligned_cols=91  Identities=21%  Similarity=0.271  Sum_probs=78.9

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEE-eeC---CCceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFP-LIH---GVNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V~d~~   65 (243)
                      -..++|+|+|++|+||...+..+.+|+||+                ++.||+|||+|.|. +..   ....|.|+|||++
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~   92 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVE   92 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence            456799999999999999998888999988                44899999999998 543   2457999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      .++++++||++.|+|+++........|+.|.
T Consensus        93 ~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~  123 (124)
T cd08389          93 RMRKERLIGEKVVPLSQLNLEGETTVWLTLE  123 (124)
T ss_pred             CcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence            9999999999999999997666677888875

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.68  E-value=4.3e-16  Score=118.67  Aligned_cols=79  Identities=15%  Similarity=0.340  Sum_probs=68.6

Q ss_pred             ceEEEEEEEeeCCCCCCCC----CCCCcEEe--------------CCCCCcccceEEEEeeCC--CceEEEEEEecCCCC
Q 038128            9 QPLEVTVIACKGLKDTEWL----SKQDPYVY--------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNSNTIT   68 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~----g~~dPYv~--------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~~~~~   68 (243)
                      +.|.|+|++|++|+..+..    +.+||||+              ++.||+|||+|.|.+.+.  ...|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            5799999999999987643    24899999              789999999999998643  347999999999999


Q ss_pred             CCceeeEEEEEchHhhhcC
Q 038128           69 GDDFIGSGKVQLTKAITQG   87 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~   87 (243)
                      +|++||+++|+|.+|+...
T Consensus        81 ~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          81 FNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             CCcceEEEEEEHHHHHhhC
Confidence            9999999999999998653

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.68  E-value=2.8e-16  Score=122.01  Aligned_cols=92  Identities=21%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC----CCceEEEEEEe
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWN   63 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d   63 (243)
                      ....++|+|+|++|+||...+..+++||||+                 ++.||+|||+|.|.+..    ....|+|+|||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d   91 (125)
T cd08386          12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD   91 (125)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence            3457799999999999999998899999998                 67899999999998532    23479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      ++.+++|++||+++|+|+++........|+.|.
T Consensus        92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~  124 (125)
T cd08386          92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK  124 (125)
T ss_pred             CCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence            999989999999999999987766677888875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.68  E-value=2.4e-16  Score=121.91  Aligned_cols=91  Identities=21%  Similarity=0.275  Sum_probs=80.2

Q ss_pred             ccCceEEEEEEEeeCCCCCC-CCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            6 VQGQPLEVTVIACKGLKDTE-WLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ...+.|+|+|++|+||..++ ..+.+||||+                 ++.||+|||+|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            45678999999999999988 6788999997                 788999999999998643   35799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      +.++++++||++.|+|+++........|++|.
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~  122 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE  122 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence            99888999999999999998877777898875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.66  E-value=1.7e-15  Score=118.19  Aligned_cols=100  Identities=26%  Similarity=0.457  Sum_probs=81.1

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      .+|+|+|++|+ |...+..+++||||+               ++.+|+|||+|.|.+.+ ...|.|+|||++.+++|++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEE
Confidence            46999999998 555555788999997               67899999999999864 46899999999999899999


Q ss_pred             eEEEEEchHhhhcCCC-----CCceeecCCC---CccceEEEEEE
Q 038128           74 GSGKVQLTKAITQGYD-----DNPWPLWTRS---GKHAGEVNIIL  110 (243)
Q Consensus        74 G~~~i~L~~l~~~~~~-----~~~~~L~~~~---g~~~G~L~l~l  110 (243)
                      |++++.|.+++.....     ..|+.|...+   +...|+|++++
T Consensus        80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            9999999999865331     2467777443   26789988876

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=8.5e-17  Score=145.47  Aligned_cols=94  Identities=24%  Similarity=0.398  Sum_probs=83.5

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC--CCceEEEEEEe
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH--GVNEMNLVVWN   63 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~--~~~~L~v~V~d   63 (243)
                      .++...|+|+|.+|+||..+|-+|.+||||+                   .++||+|||+|+|.+..  .++.|.|||||
T Consensus       176 ~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWD  255 (683)
T KOG0696|consen  176 HIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWD  255 (683)
T ss_pred             EecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEec
Confidence            3567789999999999999999999999999                   78999999999999964  46689999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      ||+.+++||+|..++.|++|.... .+.||.|++.+
T Consensus       256 WDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqe  290 (683)
T KOG0696|consen  256 WDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQE  290 (683)
T ss_pred             ccccccccccceecccHHHHhhcc-hhhHHHHhhhh
Confidence            999999999999999999987654 57899988653

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.66  E-value=1.5e-15  Score=121.62  Aligned_cols=77  Identities=23%  Similarity=0.474  Sum_probs=71.3

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      +.|+|+|++|+||...+. +.+||||+              ++.||+|||+|.|.+.+....|+|+|||++.+++|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            679999999999998887 78999998              788999999999999887778999999999999999999


Q ss_pred             EEEEEchHhhhc
Q 038128           75 SGKVQLTKAITQ   86 (243)
Q Consensus        75 ~~~i~L~~l~~~   86 (243)
                      ++.++|.+++..
T Consensus        81 ~a~i~l~~l~~~   92 (145)
T cd04038          81 EAEIDLEPLVEA   92 (145)
T ss_pred             EEEEEHHHhhhh
Confidence            999999998754

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.66  E-value=6.6e-16  Score=121.04  Aligned_cols=91  Identities=25%  Similarity=0.346  Sum_probs=74.2

Q ss_pred             CccCceEEEEEEEeeCCCCCCCC-CCCCcEEe-----------------CCCCCcccceEEEE-eeC---CCceEEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWL-SKQDPYVY-----------------GGKNPTFQEKFMFP-LIH---GVNEMNLVVW   62 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-----------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V~   62 (243)
                      .....+|+|+|++|+||+..+.. +.+||||+                 ++.||+|||+|.|. +..   ....|+|+||
T Consensus        12 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~   91 (128)
T cd08388          12 NSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL   91 (128)
T ss_pred             ECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence            34577999999999999998876 88999998                 78999999999994 432   2347999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhc--CCCCCceee
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQ--GYDDNPWPL   95 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~--~~~~~~~~L   95 (243)
                      |++.+++|++||++.|+|.++...  +....|..|
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence            999999999999999999987544  233455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.65  E-value=4.5e-16  Score=122.92  Aligned_cols=93  Identities=20%  Similarity=0.289  Sum_probs=78.4

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC---CCceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d~   64 (243)
                      ..+.|.|+|++|+||...+..+.+||||+                   ++.||+|||+|.|.+..   ....|+|+|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            56789999999999999998999999998                   67899999999999864   234699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK  101 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~  101 (243)
                      +.++++++||++.|.+..  .......|++|....++
T Consensus        93 d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~  127 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRR  127 (136)
T ss_pred             CCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCC
Confidence            999999999999999987  33445678888754443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.65  E-value=6.5e-16  Score=125.90  Aligned_cols=90  Identities=20%  Similarity=0.323  Sum_probs=77.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC----CCceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d   63 (243)
                      ..++|+|+|++|+||...+..+.+||||+                   ++.||+|||+|.|.+..    ....|+|+|||
T Consensus        25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            35789999999999999998899999997                   67899999999998632    23479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      ++.+++|+|||++.|.+.++...+....|+.|.
T Consensus       105 ~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~  137 (162)
T cd04020         105 HDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST  137 (162)
T ss_pred             CCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence            999989999999999999987666667777765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.65  E-value=1.1e-15  Score=119.63  Aligned_cols=93  Identities=28%  Similarity=0.409  Sum_probs=81.6

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEe
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWN   63 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d   63 (243)
                      +++.++|+|+|++|++|...+..+.+||||+                   ++.+|+|||+|.|.+...  ...|+|+|||
T Consensus         9 ~~~~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d   88 (131)
T cd04026           9 SVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD   88 (131)
T ss_pred             EECCCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence            5677999999999999999888888999997                   578999999999998654  4579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      ++.++++++||+++++|.++... ....||.|.+.
T Consensus        89 ~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~  122 (131)
T cd04026          89 WDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ  122 (131)
T ss_pred             CCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence            99988899999999999998754 56789999854

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.65  E-value=4.4e-16  Score=122.32  Aligned_cols=94  Identities=22%  Similarity=0.405  Sum_probs=78.6

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ....+.|.|+|++|++|...+..+.+||||+                   ++.||+|||+|.|.+...   ...|+|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            3467899999999999999998899999987                   678999999999998643   357999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      |++.+++|++||++.|.+..  .......|++++...+
T Consensus        89 d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~  124 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPD  124 (133)
T ss_pred             eCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCC
Confidence            99998889999999999985  2334457888875433

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.65  E-value=1.4e-15  Score=116.49  Aligned_cols=97  Identities=22%  Similarity=0.281  Sum_probs=76.8

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC---CceEEEEEEecCCCCCCc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~~d~   71 (243)
                      .|+|+|++|++|+.+   +.+||||+               + .||+|||+|.|.+.+.   ...|.|.+||++.++++.
T Consensus         1 ~L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~   76 (117)
T cd08383           1 SLRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDI   76 (117)
T ss_pred             CeEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCee
Confidence            378999999999876   68999998               5 8999999999999763   356889999988776666


Q ss_pred             eeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEE
Q 038128           72 FIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRC  112 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~  112 (243)
                      ++|.+.|  ..+........|+.|...+.  +..|+|+|+++|
T Consensus        77 ~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          77 VIGKVAL--SKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEEEe--cCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            7776554  44444555678999986543  578999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.65  E-value=2.6e-15  Score=120.11  Aligned_cols=104  Identities=17%  Similarity=0.307  Sum_probs=86.1

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCC-CC---
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNT-IT---   68 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~-~~---   68 (243)
                      .+.|.|.|++|++|+.++     ++||+               ++.||.|+|+|.|.+......|+|.||+.+. ++   
T Consensus        10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            357999999999998754     78998               7789999999999987777889999976542 22   


Q ss_pred             CCceeeEEEEEchHhhhcCCCCCceeecCCCCc----------cceEEEEEEEEEecC
Q 038128           69 GDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK----------HAGEVNIILRCANVW  116 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~----------~~G~L~l~l~~~~~~  116 (243)
                      ++++||.+.|++++|......+.||.|...+++          ..++|+|+++|.+..
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            578999999999999877777899999976543          237999999998753

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PLN03008 Phospholipase D delta

Probab=99.64  E-value=9.4e-16  Score=149.23  Aligned_cols=111  Identities=18%  Similarity=0.342  Sum_probs=95.7

Q ss_pred             ccCceEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEe--------
Q 038128            6 VQGQPLEVTVIACKGLKDTEW------------------------------------------LSKQDPYVY--------   35 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~------------------------------------------~g~~dPYv~--------   35 (243)
                      +..++|.|+|.+|++|+++++                                          .+++||||+        
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv   90 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATL   90 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcce
Confidence            578899999999999986322                                          235799999        


Q ss_pred             -------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc---cceE
Q 038128           36 -------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK---HAGE  105 (243)
Q Consensus        36 -------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~---~~G~  105 (243)
                             ++.||+|||+|.|.|.+....|+|+|||+|.++ +++||++.|+|++|......+.|++|+..+++   ..++
T Consensus        91 ~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k  169 (868)
T PLN03008         91 ARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA  169 (868)
T ss_pred             eeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence                   778999999999999987789999999999996 68999999999999887777899999976653   4689


Q ss_pred             EEEEEEEEecCC
Q 038128          106 VNIILRCANVWN  117 (243)
Q Consensus       106 L~l~l~~~~~~~  117 (243)
                      |+|+|+|.+...
T Consensus       170 l~v~lqf~pv~~  181 (868)
T PLN03008        170 IFIDMKFTPFDQ  181 (868)
T ss_pred             EEEEEEEEEccc
Confidence            999999999765

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.64  E-value=1.3e-15  Score=120.71  Aligned_cols=88  Identities=30%  Similarity=0.561  Sum_probs=77.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC----------------Cce
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG----------------VNE   56 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~----------------~~~   56 (243)
                      |+|+|++|++|..+ ..+++||||+                  ++.+|+|||+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            68999999999988 7889999997                  578999999999998653                347


Q ss_pred             EEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           57 MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        57 L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      |+|+|||++.+++++|||++.|+|.++........||.|..++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~  122 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence            9999999999888999999999999988777778999998654

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.64  E-value=1.1e-15  Score=119.11  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCce
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~   72 (243)
                      .|+|+|++|++|...+..+++||||+                ++.||+|||+|.|.+... ...|.|+|||++.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            48999999999999999999999998                678999999999998543 5689999999999989999


Q ss_pred             eeEEEEEchHhhhcCCCCCce-eecCCCCccceEEEEEEEEEe
Q 038128           73 IGSGKVQLTKAITQGYDDNPW-PLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~-~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      ||++.|+|++....   ..|. .+...+....|.++.+..+.+
T Consensus        81 iG~~~i~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          81 IGETVIDLEDRFFS---KHRATCGLPPTYEESGPNQWRDSLKP  120 (124)
T ss_pred             eEEEEEeecccccc---hHHHhccCCCcccccCceecCcccCc
Confidence            99999999976532   1222 222233335566666555544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.63  E-value=2.1e-15  Score=121.53  Aligned_cols=88  Identities=20%  Similarity=0.353  Sum_probs=73.8

Q ss_pred             eEEEEEEEeeCCCCCCCCC--------------CCCcEEe--------------CCCCCcccceEEEEeeC--CCceEEE
Q 038128           10 PLEVTVIACKGLKDTEWLS--------------KQDPYVY--------------GGKNPTFQEKFMFPLIH--GVNEMNL   59 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g--------------~~dPYv~--------------~~~nP~WnE~f~f~i~~--~~~~L~v   59 (243)
                      +|+|+|++|++|+.++..+              .+||||+              ++.||+|||+|.|.+..  ....|+|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            5899999999999987543              6899999              78899999999999743  3458999


Q ss_pred             EEEecCCCCCCceeeEEEEEchHhhhcCCC-------CCceeecC
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKAITQGYD-------DNPWPLWT   97 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~-------~~~~~L~~   97 (243)
                      +|||+|.+++|++||++.|+|.+|...+..       ..|+.|..
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg  125 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence            999999999999999999999998765432       36777764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.63  E-value=3.1e-15  Score=117.80  Aligned_cols=79  Identities=22%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC-----CceEEEE
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG-----VNEMNLV   60 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~-----~~~L~v~   60 (243)
                      ..++|+|+|++|++|...+..+++||||+                     ++.||+|||+|.|.+...     ...|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            45789999999999999988899999997                     567999999999998642     4479999


Q ss_pred             EEecCCCCCCceeeEEEEEchHhhh
Q 038128           61 VWNSNTITGDDFIGSGKVQLTKAIT   85 (243)
Q Consensus        61 V~d~~~~~~d~~IG~~~i~L~~l~~   85 (243)
                      |||++.+++|+|||++.|+|++|..
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            9999999889999999999998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.62  E-value=1.1e-15  Score=120.72  Aligned_cols=92  Identities=20%  Similarity=0.315  Sum_probs=77.2

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||...+..+++||||+                   ++.||+|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            46789999999999999888899999987                   678999999999998532   34799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      +.+++|++||++.|++.+.  ......|++|+...+
T Consensus        93 ~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~  126 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPR  126 (136)
T ss_pred             CCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCC
Confidence            9999999999999999864  333457778775443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.62  E-value=9.6e-15  Score=115.84  Aligned_cols=99  Identities=17%  Similarity=0.363  Sum_probs=79.7

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------------CCCCCcc-cceEEEEeeCCCceEEEEE
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------------GGKNPTF-QEKFMFPLIHGVNEMNLVV   61 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------------~~~nP~W-nE~f~f~i~~~~~~L~v~V   61 (243)
                      .+.|++++|+||+ +++++++||||+                           +++||+| ||+|.|.+.. ...|+|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4789999999998 778899999997                           3689999 9999999963 35799999


Q ss_pred             EecCCCCC---CceeeEEEEEchHhhhcCC---CCCceeecCCCC--ccceEEEEEE
Q 038128           62 WNSNTITG---DDFIGSGKVQLTKAITQGY---DDNPWPLWTRSG--KHAGEVNIIL  110 (243)
Q Consensus        62 ~d~~~~~~---d~~IG~~~i~L~~l~~~~~---~~~~~~L~~~~g--~~~G~L~l~l  110 (243)
                      ||++..++   |++||++.|+|.+|+....   ...|+.|..+..  ...|+|.|++
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            99865443   7999999999999976643   345788775442  4678888875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=3.8e-15  Score=138.15  Aligned_cols=116  Identities=25%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC---CCceEEEEEEe
Q 038128            4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH---GVNEMNLVVWN   63 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~---~~~~L~v~V~d   63 (243)
                      +..+...|+|+|++|++|..++..+.+||||+                 +++||+|||+|.|.|..   ..+.|.|.|||
T Consensus       162 Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~  241 (421)
T KOG1028|consen  162 YDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYD  241 (421)
T ss_pred             ecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEe
Confidence            45678899999999999999996678999999                 78899999999999853   35589999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC---CccceEEEEEEEEEecCCcc
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS---GKHAGEVNIILRCANVWNFL  119 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~---g~~~G~L~l~l~~~~~~~~~  119 (243)
                      .|+|++|++||++.++|..+........|.+|....   .+..|+|.++++|.+.++..
T Consensus       242 ~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~l  300 (421)
T KOG1028|consen  242 FDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRL  300 (421)
T ss_pred             cCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeE
Confidence            999999999999999999887666566788888642   23348999999999986643

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.62  E-value=1e-15  Score=120.83  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+...   ...|+|+|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            356789999999999999999999999997                   677999999999998643   2479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      ++.+++|++||++.|.+...  ......|++|+..
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            99999999999999999752  3344578888754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.61  E-value=1.2e-15  Score=120.17  Aligned_cols=94  Identities=19%  Similarity=0.267  Sum_probs=77.1

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ....++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+...   ...|+|+||
T Consensus        10 ~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~   89 (134)
T cd08403          10 LPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVV   89 (134)
T ss_pred             cCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            3467899999999999999999999999986                   678999999999998532   236999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      |++.+++|++||++.|.+..  .......|++++...+
T Consensus        90 d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~~~  125 (134)
T cd08403          90 DYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLANPR  125 (134)
T ss_pred             ECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHCCC
Confidence            99999999999999998772  2333456888775444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.61  E-value=1.6e-14  Score=112.06  Aligned_cols=100  Identities=23%  Similarity=0.341  Sum_probs=82.4

Q ss_pred             ceEEEEEEEeeCCCCCC--CCCCCCcEEe--------------------CC-CCCcccceEEEEeeCCC-ceEEEEEEec
Q 038128            9 QPLEVTVIACKGLKDTE--WLSKQDPYVY--------------------GG-KNPTFQEKFMFPLIHGV-NEMNLVVWNS   64 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~--~~g~~dPYv~--------------------~~-~nP~WnE~f~f~i~~~~-~~L~v~V~d~   64 (243)
                      ..|+|+|++|+||...+  ..+..|+||+                    ++ .||+|||+|.|.+.... ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            36899999999999887  5778999985                    23 39999999999997544 4799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEE
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRC  112 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~  112 (243)
                      +.+ +|++||++.+.|++|..   ...++.|...++  ...|.|.+++++
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence            988 89999999999998743   346788887666  357888888876

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.61  E-value=2.8e-15  Score=114.26  Aligned_cols=86  Identities=24%  Similarity=0.308  Sum_probs=71.8

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCC-----CceEEEEEEecCCCC
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG-----VNEMNLVVWNSNTIT   68 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~-----~~~L~v~V~d~~~~~   68 (243)
                      .-.|+|+|++|++|.    .+++||||+              ++.||+|||+|.|.+...     ...|+|+|||++.++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            347899999999998    467999999              678999999999998543     357999999999998


Q ss_pred             CCceeeEEEEEchHhhhcCC---CCCceeecC
Q 038128           69 GDDFIGSGKVQLTKAITQGY---DDNPWPLWT   97 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~~---~~~~~~L~~   97 (243)
                      +|++||+++|+|.++.....   ...|+.|..
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            89999999999999876532   346888763

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.61  E-value=1.4e-15  Score=118.99  Aligned_cols=91  Identities=20%  Similarity=0.290  Sum_probs=78.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      +.++|+|+|++|+||...+..+.+|+||+                   ++.+|+|||+|.|.+...   ...|+|+|||+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            46799999999999999988889999997                   577999999999999754   35799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      +.++++++||++.|.|++  .......|+.|....
T Consensus        92 ~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          92 DSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            998889999999999998  444557899998653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.61  E-value=1.8e-15  Score=119.84  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...++|+|+|++|+||...+..+.+||||+                   ++.||+|||+|.|.|...   ...|+|+|||
T Consensus        12 ~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~   91 (136)
T cd08406          12 PTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAE   91 (136)
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEe
Confidence            356789999999999999988889999999                   678999999999999642   4579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      ++.++++++||++.|....  .......|.+++..
T Consensus        92 ~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~  124 (136)
T cd08406          92 STEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS  124 (136)
T ss_pred             CCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence            9999999999999997653  23334567777643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.61  E-value=1.4e-15  Score=120.69  Aligned_cols=91  Identities=22%  Similarity=0.200  Sum_probs=74.1

Q ss_pred             ccCceEEEEEEEeeCCCCCCC--CCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEW--LSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVV   61 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~--~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V   61 (243)
                      -..++|+|+|++|+||...+.  .+.+||||+                   ++.||+|||+|.|.|...   ...|.|+|
T Consensus        12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence            357889999999999998873  345899999                   789999999999999643   35799999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      ||+|.+++|++||++.|.+..  .......|.+++..
T Consensus        92 ~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~  126 (138)
T cd08407          92 LNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDN  126 (138)
T ss_pred             EeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence            999999999999999999864  23333466666643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.60  E-value=3.8e-15  Score=116.66  Aligned_cols=75  Identities=25%  Similarity=0.492  Sum_probs=65.9

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEee--CCCceEEEEEEecCCCCCCce
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLI--HGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~--~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ++|+|+|++|++|.. +..++.||||+              ++.||+|||+|.|.+.  +....|+|+|||++.+++|++
T Consensus        28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~  106 (127)
T cd04032          28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDL  106 (127)
T ss_pred             EEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCe
Confidence            589999999999984 67788999997              7789999999999853  345689999999999999999


Q ss_pred             eeEEEEEchHhh
Q 038128           73 IGSGKVQLTKAI   84 (243)
Q Consensus        73 IG~~~i~L~~l~   84 (243)
                      ||+++|.|....
T Consensus       107 IG~~~i~l~~~~  118 (127)
T cd04032         107 LGTCSVVPEAGV  118 (127)
T ss_pred             eEEEEEEecCCc
Confidence            999999999654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.59  E-value=1.3e-14  Score=112.00  Aligned_cols=85  Identities=26%  Similarity=0.502  Sum_probs=73.0

Q ss_pred             EEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEee-CCCceEEEEEEecCC----
Q 038128           13 VTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNT----   66 (243)
Q Consensus        13 V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~----   66 (243)
                      ...++|++|...+..+++||||+                     ++.||+|||+|.|.+. +....|+|+|||++.    
T Consensus         4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~   83 (120)
T cd04048           4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD   83 (120)
T ss_pred             EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence            35589999999999999999996                     6689999999999874 345579999999997    


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +++|++||+++++|.+|+.......|+.|..
T Consensus        84 ~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          84 LSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            7889999999999999987776677888854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.58  E-value=1.4e-14  Score=110.55  Aligned_cols=86  Identities=19%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             CCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCceeeEEEEEchHhhhc-C
Q 038128           25 EWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQ-G   87 (243)
Q Consensus        25 ~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~-~   87 (243)
                      .+.|++||||+               ++.||+|||+|.|.+.+. ...|+|+|||++.+ +|++||++.|+|++++.. .
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~   86 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS   86 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh
Confidence            35677899998               778999999999999765 45799999999999 899999999999999764 3


Q ss_pred             CCCCceeecCCCCccceEEEEEEEEEe
Q 038128           88 YDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        88 ~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      ....||.|..   +..|+|+|++.|.+
T Consensus        87 ~~~~w~~L~~---~~~G~i~~~~~~~p  110 (111)
T cd04052          87 VGQQWFPLSG---NGQGRIRISALWKP  110 (111)
T ss_pred             ccceeEECCC---CCCCEEEEEEEEec
Confidence            4468999874   46899999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.57  E-value=4.9e-15  Score=117.04  Aligned_cols=94  Identities=21%  Similarity=0.324  Sum_probs=74.9

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...+.|+|+|++|++|...+..+.+||||+                   ++.||+|||+|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d   90 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYG   90 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence            356899999999999999998899999998                   668999999999999532   2369999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      ++.+++|++||++.|....+ .......|+.|+...+
T Consensus        91 ~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~~~  126 (135)
T cd08410          91 HNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNSQR  126 (135)
T ss_pred             CCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhCCC
Confidence            99999999999998654321 1122456888875544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.57  E-value=3.9e-15  Score=118.24  Aligned_cols=93  Identities=20%  Similarity=0.270  Sum_probs=76.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~   62 (243)
                      ...++|+|+|++|+||...+..+.+|+||+                    ++.||+|||+|.|.|...   ...|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            456899999999999999998889999999                    668999999999999643   347999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      |.+.++++++||++.|.+...- ......|.+++...
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~  127 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESK  127 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCC
Confidence            9999999999999999877422 12234677776433

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.57  E-value=2.1e-14  Score=115.85  Aligned_cols=84  Identities=30%  Similarity=0.451  Sum_probs=72.8

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------------------------------CCCCCccc
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------------------------------GGKNPTFQ   43 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------------------------------~~~nP~Wn   43 (243)
                      ....|+|+|++|++|..++..+++||||+                                           ++.||+||
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn  105 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN  105 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence            45689999999999999999999999985                                           35799999


Q ss_pred             ceEEEEeeCC-CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceee
Q 038128           44 EKFMFPLIHG-VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPL   95 (243)
Q Consensus        44 E~f~f~i~~~-~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L   95 (243)
                      |+|.|.+.+. ...|.|+|||++    |+|||+++|+|+++.. ...+.||.|
T Consensus       106 E~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         106 ETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             cEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            9999999764 458999999997    8999999999999873 446788876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.57  E-value=5.6e-15  Score=117.06  Aligned_cols=91  Identities=19%  Similarity=0.274  Sum_probs=75.3

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...++|+|+|++|+||...+ .+.+|+||+                   ++.||+|||+|.|.|...   ...|.|+|||
T Consensus        12 ~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~   90 (137)
T cd08409          12 PTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQ   90 (137)
T ss_pred             CCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEe
Confidence            35689999999999999888 778999999                   688999999999999632   3479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      ++.++++++||++.|.............|.+++.
T Consensus        91 ~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          91 SGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             CCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            9999899999999998654433444567777774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.56  E-value=2.4e-14  Score=110.90  Aligned_cols=81  Identities=28%  Similarity=0.494  Sum_probs=69.5

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eC---CCceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IH---GVNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~---~~~~L~v~V~d   63 (243)
                      ..++|+|+|++|++|...+..+.+||||+                   ++.||+|||+|.|.. ..   ....|.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            45789999999999999888889999998                   567999999999964 32   13579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGY   88 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~   88 (243)
                      ++.+ ++++||++.|+|++|.....
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCCcc
Confidence            9988 89999999999999876544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.55  E-value=1.2e-14  Score=152.51  Aligned_cols=107  Identities=16%  Similarity=0.302  Sum_probs=92.5

Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC--CceEEEEEEecCC
Q 038128            4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNSNT   66 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~~~   66 (243)
                      +...-+.|+|+|++|+||.  +.++++||||+               ++.||+|||.|+|.+.+.  ...|+|+|||+|.
T Consensus      1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200       1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred             HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence            3445689999999999998  55788999999               788999999999888764  3579999999999


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceE---EEEEEEEEe
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE---VNIILRCAN  114 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~---L~l~l~~~~  114 (243)
                      |+ ++.||.++|+|.+++.++....||.|. +++++.|+   |+|+++|.+
T Consensus      2053 f~-kd~~G~~~i~l~~vv~~~~~~~~~~L~-~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2053 FG-KSSLGKVTIQIDRVVMEGTYSGEYSLN-PESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             cC-CCCCceEEEEHHHHhcCceeeeeeecC-cccccCCCcceEEEEEEecC
Confidence            95 558999999999999998889999999 45566777   999999975

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.54  E-value=7.9e-14  Score=107.36  Aligned_cols=66  Identities=23%  Similarity=0.470  Sum_probs=56.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEec-------
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNS-------   64 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~-------   64 (243)
                      |+|+|++|+||+     +.+||||+                   +++||+|||+|+|.+.. ...|.|.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            689999999995     45899999                   67999999999999964 56899999998       


Q ss_pred             CCCCCCceeeEEEEEchH
Q 038128           65 NTITGDDFIGSGKVQLTK   82 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~   82 (243)
                      |..++|++||.+.|.|+-
T Consensus        75 d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccCcccEEEEEEEEECH
Confidence            466789999998888864

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.53  E-value=2.6e-14  Score=112.75  Aligned_cols=91  Identities=8%  Similarity=0.164  Sum_probs=72.0

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CC-CCCcccceEEEEeeCC--CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GG-KNPTFQEKFMFPLIHG--VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~-~nP~WnE~f~f~i~~~--~~~L~v~V~d   63 (243)
                      -..++|+|+|++|+||+........|+||+                   ++ .+|+|||+|.|+|...  +..|.|+|||
T Consensus        11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d   90 (135)
T cd08692          11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS   90 (135)
T ss_pred             CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence            356789999999999998755566799999                   45 3699999999999643  2368999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      ++.++++++||++.+.++.. .....+.|.+++.
T Consensus        91 ~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~  123 (135)
T cd08692          91 RSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA  123 (135)
T ss_pred             CCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence            99999999999999998753 2223456777664

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.7e-14  Score=131.57  Aligned_cols=107  Identities=25%  Similarity=0.451  Sum_probs=91.6

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC-------
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI-------   67 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~-------   67 (243)
                      ..++++|+.|.+|..+|..|++||||.              ..+||+|||+|.|.+.+....|+|+|||+|..       
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrq  374 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQ  374 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHH
Confidence            478999999999999999999999999              67899999999999999999999999998742       


Q ss_pred             ----CCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEecCC
Q 038128           68 ----TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCANVWN  117 (243)
Q Consensus        68 ----~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~~~~  117 (243)
                          ..|||||++.|.+..|  +++++.||.|..+..+  ..|.|+|.|..+.+.+
T Consensus       375 kl~resddflgqtvievrtl--sgemdvwynlekrtdksavsgairlhisveikge  428 (1283)
T KOG1011|consen  375 KLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE  428 (1283)
T ss_pred             HhhhcccccccceeEEEEec--ccchhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence                3589999999998864  4667899999876543  6788888888776554

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.47  E-value=4.7e-13  Score=101.57  Aligned_cols=74  Identities=22%  Similarity=0.442  Sum_probs=63.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeC---C--CceEEEEEEecC
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIH---G--VNEMNLVVWNSN   65 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~---~--~~~L~v~V~d~~   65 (243)
                      +.+..++|++|...+..+++||||+                    +++||+|| +|.|.+.+   .  ...|+|+|||++
T Consensus         2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            3456679999999999999999997                    57899999 78887632   1  458999999999


Q ss_pred             CCCCCceeeEEEEEchHhhh
Q 038128           66 TITGDDFIGSGKVQLTKAIT   85 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~   85 (243)
                      .+++|++||++++.|++|+.
T Consensus        81 ~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          81 SSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCCCcEEEEEEEEHHHHhc
Confidence            99999999999999999883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.39  E-value=2.3e-12  Score=122.25  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=99.1

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ...|.|+|.+||||+..+..+..|+||.               +++.|-|.|+|.|.|...-..|.|-|||+| +++|+.
T Consensus         4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~   82 (800)
T KOG2059|consen    4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDI   82 (800)
T ss_pred             ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-cccccc
Confidence            3568999999999999999999999999               899999999999999988889999999999 889999


Q ss_pred             eeEEEEEchHhhhcCCCCCceeecCCC--CccceEEEEEEEEEecCC
Q 038128           73 IGSGKVQLTKAITQGYDDNPWPLWTRS--GKHAGEVNIILRCANVWN  117 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~~L~~~~--g~~~G~L~l~l~~~~~~~  117 (243)
                      ||.+.|.-++|......+.||.|..-+  .+..|+|+|++.+.+...
T Consensus        83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~  129 (800)
T KOG2059|consen   83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ  129 (800)
T ss_pred             cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccC
Confidence            999999999988777788999998654  468999999999998655

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.37  E-value=1.8e-12  Score=92.39  Aligned_cols=67  Identities=33%  Similarity=0.648  Sum_probs=59.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEee-CCCceEEEEEEecCCCCCCce
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      |+|+|++|++|...+..+..|+||+                 ++.+|+|||+|.|.+. .....|.|+|||++.+++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            7899999999999888889999999                 6689999999999974 344569999999999988999


Q ss_pred             eeEEE
Q 038128           73 IGSGK   77 (243)
Q Consensus        73 IG~~~   77 (243)
                      ||+++
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99975

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>PLN02270 phospholipase D alpha

Probab=99.34  E-value=1e-11  Score=121.16  Aligned_cols=111  Identities=16%  Similarity=0.202  Sum_probs=94.9

Q ss_pred             ccCceEEEEEEEeeCCCCCC------------------CCCCCCcEEe---------------C-CCCCcccceEEEEee
Q 038128            6 VQGQPLEVTVIACKGLKDTE------------------WLSKQDPYVY---------------G-GKNPTFQEKFMFPLI   51 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~------------------~~g~~dPYv~---------------~-~~nP~WnE~f~f~i~   51 (243)
                      +..++|+|+|++|++|++.+                  ..+.+|+||.               + ..||+|+|+|.+.+.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            67899999999999998631                  1134699999               3 359999999999999


Q ss_pred             CCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc---ceEEEEEEEEEecCC
Q 038128           52 HGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH---AGEVNIILRCANVWN  117 (243)
Q Consensus        52 ~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~---~G~L~l~l~~~~~~~  117 (243)
                      +....|+|+|+|.|.++ .++||.+.|++.+|+.....+.||+|+..+++.   ..+|+|+|+|.+...
T Consensus        85 h~~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         85 HMASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             cCcceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            99999999999999996 679999999999999888889999999877653   358999999999654

>cd00030 C2 C2 domain

Probab=99.33  E-value=1.8e-11  Score=88.46  Aligned_cols=85  Identities=31%  Similarity=0.605  Sum_probs=71.4

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeC-CCceEEEEEEecCCCCCCceee
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      |.|.|++|++|.........|+||+               ++.+|.|||.|.|.+.. ....|.|+||+++..+.+++||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            5799999999988666778999997               56899999999999987 5668999999999887799999


Q ss_pred             EEEEEchHhh-hcCCCCCceee
Q 038128           75 SGKVQLTKAI-TQGYDDNPWPL   95 (243)
Q Consensus        75 ~~~i~L~~l~-~~~~~~~~~~L   95 (243)
                      .+.+.+.++. .......|+.|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999987 44444556543

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.29  E-value=4e-11  Score=87.20  Aligned_cols=78  Identities=29%  Similarity=0.554  Sum_probs=66.9

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~   71 (243)
                      +|.|+|++|++|.........++||+                 ++.+|.|||+|.|.+... ...|+|+|||++..+.+.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence            47899999999998776667899877                 345999999999999776 678999999999887799


Q ss_pred             eeeEEEEEchHhhhcC
Q 038128           72 FIGSGKVQLTKAITQG   87 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~   87 (243)
                      +||.+.++|.++..+.
T Consensus        81 ~~G~~~~~l~~~~~~~   96 (101)
T smart00239       81 FIGQVTIPLSDLLLGG   96 (101)
T ss_pred             eeEEEEEEHHHcccCc
Confidence            9999999999876543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.25  E-value=4.6e-11  Score=118.84  Aligned_cols=113  Identities=24%  Similarity=0.378  Sum_probs=96.8

Q ss_pred             CCccCceEEEEEEEeeCCCCCC--CCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCC
Q 038128            4 ANVQGQPLEVTVIACKGLKDTE--WLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNT   66 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~--~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~   66 (243)
                      .+..-|.|+|+|.+|++|+..+  +.+..|+|++               ++.||+|||+|.+.|......|.|+|||++.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            3456689999999999999887  6788999999               7789999999999999888899999999998


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCC-ceeecCCCCccceEEEEEEEEEecCC
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDN-PWPLWTRSGKHAGEVNIILRCANVWN  117 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~-~~~L~~~~g~~~G~L~l~l~~~~~~~  117 (243)
                      +.+|+++|++.++|..|..+..... .++++ ++.+..|+|...++|.+...
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~vGrL~yDl~ffp~~e  561 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNVGRLTYDLRFFPVIE  561 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccceeeee-ccCccceEEEEeeeeecccC
Confidence            9899999999999998877765544 44555 56678999999999988655

>PLN02223 phosphoinositide phospholipase C

Probab=99.20  E-value=1.5e-10  Score=109.03  Aligned_cols=102  Identities=25%  Similarity=0.343  Sum_probs=78.5

Q ss_pred             CceEEEEEEEeeCCCC-----CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC-ceEEEEEE
Q 038128            8 GQPLEVTVIACKGLKD-----TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV-NEMNLVVW   62 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~-----~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~   62 (243)
                      ..+|+|+|+++.+|..     .+.....|+||+                   ++.||+|||+|+|.|...+ ..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998741     123356899999                   6889999999999997554 47999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc--ceEEEEEEEE
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH--AGEVNIILRC  112 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~--~G~L~l~l~~  112 (243)
                      |+|..++|+|||+..++++.|..   .-+++.|.+++++.  .-+|.+++.|
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~---GyR~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIE---GIRAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcC---CceeEeccCCCcCCCCCceEEEEEEe
Confidence            99988889999999999997754   23678888877754  3345544443

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.19  E-value=1.4e-10  Score=91.34  Aligned_cols=78  Identities=26%  Similarity=0.445  Sum_probs=63.3

Q ss_pred             eEEEEEEEeeCCCC--CCCCCC--CCcEEe-----------------CCCC--CcccceEEEEeeC--------------
Q 038128           10 PLEVTVIACKGLKD--TEWLSK--QDPYVY-----------------GGKN--PTFQEKFMFPLIH--------------   52 (243)
Q Consensus        10 ~L~V~V~~A~~L~~--~~~~g~--~dPYv~-----------------~~~n--P~WnE~f~f~i~~--------------   52 (243)
                      .|+|.|.+|+++..  ++..+.  +|+||+                 +++|  +.||+.|.|.+..              
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            38999999999654  334564  999999                 6677  9999999998743              


Q ss_pred             -------C---CceEEEEEEecCCCCCCceeeEEEEEchHhhhcC
Q 038128           53 -------G---VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG   87 (243)
Q Consensus        53 -------~---~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~   87 (243)
                             .   ...|+|+|||.|.+++|++||++++.|..+....
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                   1   2359999999999999999999999999776543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.17  E-value=7.1e-12  Score=119.28  Aligned_cols=107  Identities=24%  Similarity=0.389  Sum_probs=89.2

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------------------------------------CCCCCcccc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------------------------------------GGKNPTFQE   44 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------------------------------~~~nP~WnE   44 (243)
                      .|.|.+.+|+||.+++.+|.+|||+.                                             +++||+|+|
T Consensus       115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E  194 (1103)
T KOG1328|consen  115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE  194 (1103)
T ss_pred             HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence            45677889999999999999999998                                             789999999


Q ss_pred             eEEEEeeCCCc-eEEEEEEecCCC---------------------------------CC---CceeeEEEEEchHhhhcC
Q 038128           45 KFMFPLIHGVN-EMNLVVWNSNTI---------------------------------TG---DDFIGSGKVQLTKAITQG   87 (243)
Q Consensus        45 ~f~f~i~~~~~-~L~v~V~d~~~~---------------------------------~~---d~~IG~~~i~L~~l~~~~   87 (243)
                      +|.|+|.+-.. .+++.|||+|.-                                 +.   |||+|++.|+|.+|-.. 
T Consensus       195 kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-  273 (1103)
T KOG1328|consen  195 KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-  273 (1103)
T ss_pred             heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-
Confidence            99999987654 799999998641                                 33   89999999999987543 


Q ss_pred             CCCCceeecCCCC--ccceEEEEEEEEEecCC
Q 038128           88 YDDNPWPLWTRSG--KHAGEVNIILRCANVWN  117 (243)
Q Consensus        88 ~~~~~~~L~~~~g--~~~G~L~l~l~~~~~~~  117 (243)
                      ..+.||+|..++.  +..|.++|+|.+..+..
T Consensus       274 Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~  305 (1103)
T KOG1328|consen  274 GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE  305 (1103)
T ss_pred             hHHHHhccCcccccccccceEEEEEEEeeecc
Confidence            3578999997764  67899999998876554

>PLN02952 phosphoinositide phospholipase C

Probab=99.13  E-value=5.1e-10  Score=107.24  Aligned_cols=103  Identities=22%  Similarity=0.334  Sum_probs=80.0

Q ss_pred             CceEEEEEEEeeCCCCC------CCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128            8 GQPLEVTVIACKGLKDT------EWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV   61 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~------~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V   61 (243)
                      ..+|.|+|++|.+|...      +.....|+||+                   ++.||+|||+|.|.+... ...|+|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46899999999887421      12233588987                   568999999999998754 45789999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      ||+|..++|+|||++.|+|+.|...   -+|+.|.+++++..+.+.|-|+|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~G---yR~VpL~~~~G~~l~~a~Llv~f~  597 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPG---IRSVPLHDKKGEKLKNVRLLMRFI  597 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCC---ceeEeCcCCCCCCCCCEEEEEEEE
Confidence            9999988899999999999987543   358899888887666666666654

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2.2e-10  Score=106.45  Aligned_cols=88  Identities=27%  Similarity=0.395  Sum_probs=72.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      .+++|+|.|++|+||+.++..+..|+||+                   ++.||+|||+|.|.|...   ...|.|+|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            46899999999999999999999999999                   789999999999998632   23699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      +.++++++||.+.+-...  .......|.++.
T Consensus       376 d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~  405 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS--TGEEVRHWQEML  405 (421)
T ss_pred             ccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence            999999999998887664  222234555554

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.07  E-value=4e-10  Score=112.34  Aligned_cols=109  Identities=17%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCCCCCC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNTITGD   70 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~~~~d   70 (243)
                      ..+.|+|.+++|.||+..|.++.+||||+               +++||+|||+|++.|.+.. ..|+|.|+|||.-.++
T Consensus      1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~kn 1117 (1227)
T COG5038        1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKN 1117 (1227)
T ss_pred             ccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCc
Confidence            47889999999999999999999999999               8999999999999998654 4799999999998899


Q ss_pred             ceeeEEEEEchHhhhcCCCCCceeecCCC-CccceEEEEEEEEEec
Q 038128           71 DFIGSGKVQLTKAITQGYDDNPWPLWTRS-GKHAGEVNIILRCANV  115 (243)
Q Consensus        71 ~~IG~~~i~L~~l~~~~~~~~~~~L~~~~-g~~~G~L~l~l~~~~~  115 (243)
                      ++||.+.|+|..|..+........|..+. ....|.+++...|...
T Consensus      1118 d~lg~~~idL~~l~~~~~~n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038        1118 DLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred             cccccccccHhhcCcCCccceeeeccCcceEecccEeecceecchh
Confidence            99999999999876655444334444322 2345555555555543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.05  E-value=1.6e-09  Score=104.43  Aligned_cols=102  Identities=25%  Similarity=0.419  Sum_probs=80.2

Q ss_pred             eEEEEEEEeeCCCCC-CC---CCCCCcEEe--------------------CCCCCcccceEEEEeeCC-CceEEEEEEec
Q 038128           10 PLEVTVIACKGLKDT-EW---LSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNS   64 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~-~~---~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~   64 (243)
                      +|.|+|+++.++... +.   ....||||.                    ++-||.|+|+|+|.|... ...|+|+|+|.
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            799999999966432 21   234677766                    677999999999999755 45789999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEe
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCAN  114 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~  114 (243)
                      |..++|||+|+.+|++++|.. +  -+.+.|.+++|+  ..-+|.|++.|.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~-G--yRhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQ-G--YRHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhC-c--eeeeeecCCCCccccceeEEEEEEEec
Confidence            999999999999999998754 2  356788887775  4567888887764

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.04  E-value=2.6e-09  Score=102.30  Aligned_cols=102  Identities=22%  Similarity=0.320  Sum_probs=78.6

Q ss_pred             CceEEEEEEEeeCCCC------CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128            8 GQPLEVTVIACKGLKD------TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV   61 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~------~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V   61 (243)
                      ..+|.|+|+.+.++..      .+.....|+||+                   ++.||+|||+|+|.+... ...|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            4689999999998641      122334799999                   678999999999998644 55799999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc--ceEEEEEEEE
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH--AGEVNIILRC  112 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~--~G~L~l~l~~  112 (243)
                      +|+|...+|+|||+..|+|+.|.. +  -+.+.|.+++|..  .-+|.+++.|
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~-G--yR~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQ-G--IHAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhC-c--cceEeccCCCcCCCCCCeeEEEEEe
Confidence            999988889999999999998754 2  3567888777743  3466666655

>PLN02352 phospholipase D epsilon

Probab=98.98  E-value=4.3e-09  Score=102.72  Aligned_cols=108  Identities=14%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             CccCceEEEEEEEeeCCCCC----CCC-CCCCcEEe------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCC
Q 038128            5 NVQGQPLEVTVIACKGLKDT----EWL-SKQDPYVY------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNT   66 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~----~~~-g~~dPYv~------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~   66 (243)
                      .+..++|+++|.+|+-+...    +.. ...|+||.            +..||+|+|+|.+.+.+.. ..|+|+|+|   
T Consensus         6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~---   82 (758)
T PLN02352          6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKTSHEYDRVWNQTFQILCAHPLDSTITITLKT---   82 (758)
T ss_pred             cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecCCCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence            36789999999999844321    111 12389999            4569999999999998887 689999998   


Q ss_pred             CCCCceeeEEEEEchHhhhcCC-CCCceeecCCCCcc-c-eEEEEEEEEEecCC
Q 038128           67 ITGDDFIGSGKVQLTKAITQGY-DDNPWPLWTRSGKH-A-GEVNIILRCANVWN  117 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~-~~~~~~L~~~~g~~-~-G~L~l~l~~~~~~~  117 (243)
                        ...+||.+.|++.+|+.... .+.||+|+..+++. . .+|+|+|+|.+...
T Consensus        83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (758)
T PLN02352         83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL  134 (758)
T ss_pred             --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence              36799999999999988755 78999999877653 3 58999999999765

>PLN02228 Phosphoinositide phospholipase C

Probab=98.96  E-value=8.6e-09  Score=98.34  Aligned_cols=106  Identities=20%  Similarity=0.268  Sum_probs=81.7

Q ss_pred             ceEEEEEEEeeCCCC---C---CCCCCCCcEEe-------------------CCCCCcc-cceEEEEeeCC-CceEEEEE
Q 038128            9 QPLEVTVIACKGLKD---T---EWLSKQDPYVY-------------------GGKNPTF-QEKFMFPLIHG-VNEMNLVV   61 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~---~---~~~g~~dPYv~-------------------~~~nP~W-nE~f~f~i~~~-~~~L~v~V   61 (243)
                      .+|+|+|++|.+|..   .   +.....|+||+                   ++.||+| ||+|+|.+... ...|+|+|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            479999999998731   1   12334788998                   4569999 99999998654 45799999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEecCC
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCANVWN  117 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~~~~  117 (243)
                      +|+|..+.|+|||+..|+|+.|.. +  -+.+.|.+.+++  ...+|.+++.|.+...
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~-G--YR~VpL~~~~G~~l~~atLfv~~~~~~~~~  565 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKS-G--VRAVRLHDRAGKAYKNTRLLVSFALDPPYT  565 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhC-C--eeEEEccCCCCCCCCCeEEEEEEEEcCccc
Confidence            999988889999999999998743 3  356788877775  3567888888877543

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.92  E-value=1.3e-08  Score=97.41  Aligned_cols=102  Identities=24%  Similarity=0.323  Sum_probs=76.6

Q ss_pred             CceEEEEEEEeeCCC----C--CCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC-CceEEEEE
Q 038128            8 GQPLEVTVIACKGLK----D--TEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG-VNEMNLVV   61 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~----~--~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V   61 (243)
                      ..+|.|+|+.+.++.    .  .+.....|+||+                   ++.||+|||+|+|.|... ...|+|+|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            357999999998742    2  122345788997                   557899999999998654 45799999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEE
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRC  112 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~  112 (243)
                      +|+|..+.|+|||+..|+|+.|.. +  -+.+.|.++++.  ..-+|.+++.|
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~-G--yR~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQ-G--IRAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhC-c--cceEEccCCCcCCCCCeeEEEEEEe
Confidence            999988889999999999997754 2  356788877764  33466666665

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.91  E-value=5.5e-09  Score=78.50  Aligned_cols=74  Identities=18%  Similarity=0.349  Sum_probs=61.4

Q ss_pred             EEEEEEEeeCCCCCC---CCCCCCcEEe------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128           11 LEVTVIACKGLKDTE---WLSKQDPYVY------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS   75 (243)
Q Consensus        11 L~V~V~~A~~L~~~~---~~g~~dPYv~------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~   75 (243)
                      |+|+|..|+||....   +.+++|+||+            -+.|++|||+|.|.| +...+|+|+|||+..- +.--||.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~srnd~WnE~F~i~V-dk~nEiel~VyDk~~~-~~~Pi~l   78 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPSRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD-QPVPVGL   78 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCCCCCcccceEEEEe-cCCcEEEEEEEeCCCC-eecceee
Confidence            689999999999887   6778999999            568999999999999 4678999999998632 3446788


Q ss_pred             EEEEchHhhhc
Q 038128           76 GKVQLTKAITQ   86 (243)
Q Consensus        76 ~~i~L~~l~~~   86 (243)
                      .=|.|++|..+
T Consensus        79 lW~~~sdi~Ee   89 (109)
T cd08689          79 LWLRLSDIAEE   89 (109)
T ss_pred             ehhhHHHHHHH
Confidence            88888887643

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.68  E-value=5.5e-08  Score=91.42  Aligned_cols=106  Identities=19%  Similarity=0.305  Sum_probs=84.5

Q ss_pred             CceEEEEEEEeeCCCCCCCCC-CCCcEEe--------------CCCCCccc-ceEEEEeeCC---CceEEEEEEecCCCC
Q 038128            8 GQPLEVTVIACKGLKDTEWLS-KQDPYVY--------------GGKNPTFQ-EKFMFPLIHG---VNEMNLVVWNSNTIT   68 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g-~~dPYv~--------------~~~nP~Wn-E~f~f~i~~~---~~~L~v~V~d~~~~~   68 (243)
                      -++|.|+|+.|++|+.+|... ..|.||+              +++||.|| +-|.|.+.+.   +..|.|++.|+|..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            367899999999999988643 4788888              88999998 6788888654   346999999999999


Q ss_pred             CCceeeEEEEEchHhhhcCC----------CCCceeecCCCCccceEEEEEEEEE
Q 038128           69 GDDFIGSGKVQLTKAITQGY----------DDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        69 ~d~~IG~~~i~L~~l~~~~~----------~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      .+|-||.+.|+|+-|..+..          ...||.+.+.--..+|+|.|-+++.
T Consensus        82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd  136 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD  136 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence            99999999999998864421          2478888754445778888877754

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.67  E-value=4.5e-08  Score=93.57  Aligned_cols=109  Identities=19%  Similarity=0.285  Sum_probs=80.9

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC----------------
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG----------------   53 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~----------------   53 (243)
                      ...+.+.+++++.+-... ++.+|||++                  ++.+|.|||.|.|.+...                
T Consensus       130 ~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~  208 (800)
T KOG2059|consen  130 SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDD  208 (800)
T ss_pred             CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCc
Confidence            333444444555444333 445999998                  788999999999998533                


Q ss_pred             CceEEEEEEe-cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC-------ccceEEEEEEEEEecCC
Q 038128           54 VNEMNLVVWN-SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG-------KHAGEVNIILRCANVWN  117 (243)
Q Consensus        54 ~~~L~v~V~d-~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g-------~~~G~L~l~l~~~~~~~  117 (243)
                      ...|+|++|+ ++...+++|+|++++++..+........||.|..+..       ...|.++|.++|.+..-
T Consensus       209 ~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V  280 (800)
T KOG2059|consen  209 MLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV  280 (800)
T ss_pred             eeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence            1258899999 5566669999999999999886666778999987532       25689999999988654

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.66  E-value=1.5e-07  Score=91.16  Aligned_cols=108  Identities=19%  Similarity=0.309  Sum_probs=80.1

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCccc-ceEEEEeeCCCc-eEEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQ-EKFMFPLIHGVN-EMNLVVW   62 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~Wn-E~f~f~i~~~~~-~L~v~V~   62 (243)
                      ++..-+|.|.|+.|+.|.... .+.+.|||+                    +++||+|| |+|+|.|.+..- .|+|+|+
T Consensus      1061 ~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1061 GLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred             cccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence            455668999999999998544 344668887                    89999999 999999987654 7999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEEEecC
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRCANVW  116 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~~~~~  116 (243)
                      |.|.|+...||++++++++.|.. +  -+.+.|++.-.  -...+|.|.|.+.+..
T Consensus      1140 eeDmfs~~~FiaqA~yPv~~ik~-G--fRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKAIKS-G--FRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred             cccccCCcceeeeeecchhhhhc-c--ceeeecccCchhhhhhhhheeeeEecccc
Confidence            99999888899999999997653 2  23445543311  1334556666665543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.59  E-value=1.5e-08  Score=97.00  Aligned_cols=78  Identities=24%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCC-----CceEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHG-----VNEMNL   59 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~-----~~~L~v   59 (243)
                      ....+|.|.|+-|+++...|.+|.+||||+                     +++||+|+|+|+|.|..+     ...|.|
T Consensus       944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen  944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred             ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence            456789999999999999999999999999                     899999999999999532     235999


Q ss_pred             EEEecCCCCCCceeeEEEEEchHh
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKA   83 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l   83 (243)
                      +|+|+|-++.|||-|++.+.|.++
T Consensus      1024 TVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             EeeccceecccccchHHHHhhCCC
Confidence            999999999999999999888775

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=7.4e-08  Score=85.14  Aligned_cols=114  Identities=22%  Similarity=0.271  Sum_probs=85.9

Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC----CceEEEE
Q 038128            4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG----VNEMNLV   60 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~----~~~L~v~   60 (243)
                      +..+++++.++|.+|++|+.+++.+..|+|++                   +++|+.|+|+........    ...+++.
T Consensus        88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~  167 (362)
T KOG1013|consen   88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV  167 (362)
T ss_pred             hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence            44578899999999999999999999999999                   789999998877664322    2358889


Q ss_pred             EEecCCCCCCceeeEEEEEchHhhhcCCC--CCce--eecCC-----CCccceEEEEEEEEEecCC
Q 038128           61 VWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPW--PLWTR-----SGKHAGEVNIILRCANVWN  117 (243)
Q Consensus        61 V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~--~L~~~-----~g~~~G~L~l~l~~~~~~~  117 (243)
                      |+|++.+.+++++|+.++.|.+|......  ..||  .|...     +-+..|+|.+++.|.....
T Consensus       168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~  233 (362)
T KOG1013|consen  168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP  233 (362)
T ss_pred             eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence            99999999999999999999887544322  2333  23211     1146788988888765443

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.24  E-value=1.3e-06  Score=86.39  Aligned_cols=76  Identities=21%  Similarity=0.330  Sum_probs=68.7

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~   71 (243)
                      ..++|+|++|.+|...|..+++|||++                +++||+|.+.|++.+.-. +..|+|+|+|+|.++.|+
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~  692 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDE  692 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccc
Confidence            367899999999999999999999999                899999999999998654 557999999999999999


Q ss_pred             eeeEEEEEchHhh
Q 038128           72 FIGSGKVQLTKAI   84 (243)
Q Consensus        72 ~IG~~~i~L~~l~   84 (243)
                      .||+.+|+|+.-.
T Consensus       693 ~iget~iDLEnR~  705 (1105)
T KOG1326|consen  693 KIGETTIDLENRW  705 (1105)
T ss_pred             hhhceehhhhhcc
Confidence            9999999998643

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.15  E-value=3e-06  Score=77.13  Aligned_cols=111  Identities=16%  Similarity=0.234  Sum_probs=81.0

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---C--------
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---V--------   54 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~--------   54 (243)
                      ++....|+++|+++.++......--.|-|++                   ++.+|.|+|.|.+.|...   .        
T Consensus       363 dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fk  442 (523)
T KOG3837|consen  363 DLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFK  442 (523)
T ss_pred             ccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHH
Confidence            4555678888888887764332111333443                   778999999999999541   1        


Q ss_pred             -ceEEEEEEecCCC-CCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEec
Q 038128           55 -NEMNLVVWNSNTI-TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANV  115 (243)
Q Consensus        55 -~~L~v~V~d~~~~-~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~~  115 (243)
                       ..++|+|+++..| ..|.|+|.+.|.|..|...-+....++|++......|+|.++|++..-
T Consensus       443 r~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  443 RLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             hcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence             1389999998754 458999999999997766666667778876555578999999998764

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=1.2e-05  Score=76.92  Aligned_cols=107  Identities=21%  Similarity=0.213  Sum_probs=82.6

Q ss_pred             CCCccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccceEEEEeeCCC----ceE
Q 038128            3 AANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQEKFMFPLIHGV----NEM   57 (243)
Q Consensus         3 ~~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE~f~f~i~~~~----~~L   57 (243)
                      .+|.-...++|.|+.|.+|+=. ..+...|||.                     ++-.|.+||+|.|.+.++.    .+|
T Consensus      1119 hpgtgehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL 1197 (1283)
T KOG1011|consen 1119 HPGTGEHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYEL 1197 (1283)
T ss_pred             CCCCCcceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEE
Confidence            5677788999999999999743 2455678887                     5567999999999996432    369


Q ss_pred             EEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCC-CCccceEEEEEE
Q 038128           58 NLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR-SGKHAGEVNIIL  110 (243)
Q Consensus        58 ~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~-~g~~~G~L~l~l  110 (243)
                      .|.|.|......|+.||.+.+.|.++...+....|+.|..+ +.+..|-+.|+|
T Consensus      1198 ~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLtiLRI 1251 (1283)
T KOG1011|consen 1198 QFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLTILRI 1251 (1283)
T ss_pred             EEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchhHHHH
Confidence            99999988766789999999999999888877889988754 234555544443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.98  E-value=6.5e-06  Score=82.80  Aligned_cols=93  Identities=23%  Similarity=0.308  Sum_probs=77.6

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEE-eeC---CCceEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFP-LIH---GVNEMNLVV   61 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V   61 (243)
                      +.+.++|.|.|.-+|+|....-....|+||+                   ++.+|.|||.++.+ +..   ..++|.+.|
T Consensus      1520 sY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1520 SYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSV 1599 (1639)
T ss_pred             EEcCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeee
Confidence            4578899999999999965554556899999                   88999999999887 322   246899999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      |..+.+..+.|+|.+.|+|.++....+...||.|..
T Consensus      1600 ls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             ecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            999988889999999999999877777778999864

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.95  E-value=7.2e-06  Score=59.69  Aligned_cols=71  Identities=20%  Similarity=0.295  Sum_probs=53.2

Q ss_pred             EEEEEEeeCCCCCCCCC-CCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecCCCCCC
Q 038128           12 EVTVIACKGLKDTEWLS-KQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTITGD   70 (243)
Q Consensus        12 ~V~V~~A~~L~~~~~~g-~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~~d   70 (243)
                      -|||++|+||.--...+ ....|++                 +..||+|.|+|.|.|...   +..|.|.|++  .+.+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            58999999997433222 2345666                 678999999999998532   3368888888  45678


Q ss_pred             ceeeEEEEEchHhh
Q 038128           71 DFIGSGKVQLTKAI   84 (243)
Q Consensus        71 ~~IG~~~i~L~~l~   84 (243)
                      +.||+|.+.|+++-
T Consensus        80 e~iG~~sL~l~s~g   93 (103)
T cd08684          80 RTIGECSLSLRTLS   93 (103)
T ss_pred             ceeeEEEeecccCC
Confidence            99999999998753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.82  E-value=6.2e-05  Score=71.09  Aligned_cols=75  Identities=21%  Similarity=0.383  Sum_probs=61.0

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee-----CCCceEEEEEEec
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI-----HGVNEMNLVVWNS   64 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~-----~~~~~L~v~V~d~   64 (243)
                      ......++|++|.++++++++|+|..                    ++++|.|.+ |.+.+.     +..+.|+|+|||.
T Consensus       137 ~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~  215 (529)
T KOG1327|consen  137 DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDY  215 (529)
T ss_pred             ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEecc
Confidence            44445567899999999999999988                    789999954 555542     3356799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhh
Q 038128           65 NTITGDDFIGSGKVQLTKAIT   85 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~   85 (243)
                      +..+++++||++...+.++..
T Consensus       216 ~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  216 DSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCCCCcCceeEecccHHHhcc
Confidence            999989999999999998754

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.82  E-value=3e-05  Score=68.88  Aligned_cols=78  Identities=27%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             CCccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC---ceEEEEE
Q 038128            4 ANVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV---NEMNLVV   61 (243)
Q Consensus         4 ~~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~---~~L~v~V   61 (243)
                      ......-|.|++++|..|..+|..+-+|+||+                   ++.+|.||+.|.|+|...+   ..+.|.|
T Consensus       228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsv  307 (362)
T KOG1013|consen  228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSV  307 (362)
T ss_pred             cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEee
Confidence            34556679999999999999999999999999                   7889999999999996542   3699999


Q ss_pred             EecCCCCCCceeeEEEEEch
Q 038128           62 WNSNTITGDDFIGSGKVQLT   81 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~   81 (243)
                      ||.+.-+.++++|-+..-+.
T Consensus       308 gd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  308 GDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             cccCCCcCccCCCccccccc
Confidence            99998767899998765443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.80  E-value=7.8e-05  Score=58.12  Aligned_cols=85  Identities=26%  Similarity=0.423  Sum_probs=60.2

Q ss_pred             EEEEEEEeeCCCCC---------CC----CCCCCcEEe------------------CCCCCcccceEEEEee--------
Q 038128           11 LEVTVIACKGLKDT---------EW----LSKQDPYVY------------------GGKNPTFQEKFMFPLI--------   51 (243)
Q Consensus        11 L~V~V~~A~~L~~~---------~~----~g~~dPYv~------------------~~~nP~WnE~f~f~i~--------   51 (243)
                      |.|.|++|.+|+..         ++    .-..|.||+                  ++-.|+|+.+|+|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            46788888888631         11    012567777                  6778999999999874        


Q ss_pred             C--------CCceEEEEEEecCC----------CCCCceeeEEEEEchHhhhcC-CCCCceee
Q 038128           52 H--------GVNEMNLVVWNSNT----------ITGDDFIGSGKVQLTKAITQG-YDDNPWPL   95 (243)
Q Consensus        52 ~--------~~~~L~v~V~d~~~----------~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L   95 (243)
                      +        ...+|+|+||+++.          ..+|-+||.++|++.+|+... ....||.+
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        12359999998652          234669999999999998764 45678764

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN02964 phosphatidylserine decarboxylase

Probab=97.64  E-value=3.1e-05  Score=75.40  Aligned_cols=85  Identities=14%  Similarity=0.289  Sum_probs=64.2

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCC-CceEEEEEEecCCCCCCc
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNSNTITGDD   71 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~~~~~~d~   71 (243)
                      .+.+.|+|++|+    +++   .|.|+.               ++.||+|||...|.|... ....+|.|||++++++++
T Consensus        53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            567889999986    232   366665               789999999999998644 346799999999999999


Q ss_pred             eeeEEEEEchHhhhcCCCC--CceeecCCC
Q 038128           72 FIGSGKVQLTKAITQGYDD--NPWPLWTRS   99 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~--~~~~L~~~~   99 (243)
                      +++.|+++|.++.......  ..|.+.+.+
T Consensus       126 lv~~~e~~~t~f~~kqi~elkeaF~lfD~d  155 (644)
T PLN02964        126 LVGYCELDLFDFVTQEPESACESFDLLDPS  155 (644)
T ss_pred             hhhheeecHhhccHHHHHHHHHHHHHHCCC
Confidence            9999999988876553322  335666544

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.61  E-value=0.0016  Score=51.22  Aligned_cols=81  Identities=14%  Similarity=0.227  Sum_probs=55.0

Q ss_pred             CCCCCcccceEEEEee----CC-----CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCC--CCceeecCCCCccce
Q 038128           36 GGKNPTFQEKFMFPLI----HG-----VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPWPLWTRSGKHAG  104 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~----~~-----~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~~L~~~~g~~~G  104 (243)
                      .+..-.|||+|.|.+.    ..     ...|+|.|+....-++...||.+.|+|.++......  ...+.|... .+...
T Consensus        48 ~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~-~~~~a  126 (143)
T PF10358_consen   48 KNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC-KKSNA  126 (143)
T ss_pred             cccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC-CCCCc
Confidence            4556799999999872    11     224888888874333336899999999999875422  334444432 35678


Q ss_pred             EEEEEEEEEecCC
Q 038128          105 EVNIILRCANVWN  117 (243)
Q Consensus       105 ~L~l~l~~~~~~~  117 (243)
                      .|+|+|++....+
T Consensus       127 ~L~isi~~~~~~~  139 (143)
T PF10358_consen  127 TLSISISLSELRE  139 (143)
T ss_pred             EEEEEEEEEECcc
Confidence            8888888887544

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.54  E-value=0.00058  Score=66.77  Aligned_cols=7  Identities=57%  Similarity=1.137  Sum_probs=2.8

Q ss_pred             CCCCCCC
Q 038128          155 PPAGYGG  161 (243)
Q Consensus       155 pp~~~~~  161 (243)
                      ||.|+.+
T Consensus       534 pp~gG~g  540 (1102)
T KOG1924|consen  534 PPTGGTG  540 (1102)
T ss_pred             CCCCCCC
Confidence            3334443

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.33  E-value=0.00026  Score=70.64  Aligned_cols=62  Identities=21%  Similarity=0.433  Sum_probs=48.4

Q ss_pred             eEEEEEEecCCCCCCceeeEEEEEchHhhhc----------------------CCCCCceeecCCCC---ccceEEEEEE
Q 038128           56 EMNLVVWNSNTITGDDFIGSGKVQLTKAITQ----------------------GYDDNPWPLWTRSG---KHAGEVNIIL  110 (243)
Q Consensus        56 ~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~----------------------~~~~~~~~L~~~~g---~~~G~L~l~l  110 (243)
                      .|.|+|||.|.|++|||||.++++|+++...                      .....||.+...++   ...|+++++|
T Consensus       940 rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~l 1019 (1105)
T KOG1326|consen  940 RLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSL 1019 (1105)
T ss_pred             heEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeeh
Confidence            4999999999999999999999999886531                      22236888876544   2579999999


Q ss_pred             EEEecCC
Q 038128          111 RCANVWN  117 (243)
Q Consensus       111 ~~~~~~~  117 (243)
                      .+..+.+
T Consensus      1020 eilt~~E 1026 (1105)
T KOG1326|consen 1020 EILTEKE 1026 (1105)
T ss_pred             hhhhhhh
Confidence            8876544

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.20  E-value=0.0002  Score=64.76  Aligned_cols=93  Identities=22%  Similarity=0.286  Sum_probs=72.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCC-CCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEe-cC
Q 038128            7 QGQPLEVTVIACKGLKDTEWL-SKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWN-SN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d-~~   65 (243)
                      ..+.|+|.|++|++|..+-.. ..+++||+                   ++.+|.+.....|+-......|.++||. ..
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            456899999999999765432 25888888                   6667777777777777777889999994 56


Q ss_pred             CCCCCceeeEEEEEchHhhhcC-CCCCceeecCCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQG-YDDNPWPLWTRS   99 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~-~~~~~~~L~~~~   99 (243)
                      ++.+++|+|.++|-|++|.... ....||+|....
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss  381 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS  381 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence            7778999999999999986655 556899988543

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.08  E-value=0.007  Score=48.88  Aligned_cols=81  Identities=17%  Similarity=0.280  Sum_probs=63.2

Q ss_pred             CCCCCcccceEEEEeeCCC--------------ceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCC--CCceeecCCC
Q 038128           36 GGKNPTFQEKFMFPLIHGV--------------NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD--DNPWPLWTRS   99 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~~--------------~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~--~~~~~L~~~~   99 (243)
                      .+.+|.|+|.|.|.+..+.              ..|+|.|...|..+...++|+-.++..+++..+..  ...++|....
T Consensus        54 ~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~  133 (156)
T PF15627_consen   54 CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG  133 (156)
T ss_pred             cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC
Confidence            7889999999999995331              23888888877776679999999999999888776  4455676544


Q ss_pred             Cc---cceEEEEEEEEEecC
Q 038128          100 GK---HAGEVNIILRCANVW  116 (243)
Q Consensus       100 g~---~~G~L~l~l~~~~~~  116 (243)
                      ..   ..|.|.|++.+.+..
T Consensus       134 ~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen  134 PESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CCCccceeEEEEEEEeecCC
Confidence            33   689999999998753

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.91  E-value=0.011  Score=53.80  Aligned_cols=104  Identities=13%  Similarity=0.181  Sum_probs=75.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC--------CCceEEEEEEecC-CC
Q 038128           11 LEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH--------GVNEMNLVVWNSN-TI   67 (243)
Q Consensus        11 L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~--------~~~~L~v~V~d~~-~~   67 (243)
                      +.|.|++++++.....   ....+.              .+..|.||-.+.|.+..        ....|+|+|+..| ..
T Consensus         2 ivl~i~egr~F~~~~~---~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR---HPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCCC---ccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            6789999999876521   112222              66789999999988742        1235999999887 55


Q ss_pred             CCCceeeEEEEEchHh---hhc--CCCCCceeecCCCC---ccceEEEEEEEEEecCC
Q 038128           68 TGDDFIGSGKVQLTKA---ITQ--GYDDNPWPLWTRSG---KHAGEVNIILRCANVWN  117 (243)
Q Consensus        68 ~~d~~IG~~~i~L~~l---~~~--~~~~~~~~L~~~~g---~~~G~L~l~l~~~~~~~  117 (243)
                      ++.+.||-+.++|..+   ...  .....||.|++.++   +.+-+|.|.|.+.....
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence            6788999999999987   333  23458999997633   35678999988887655

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.66  E-value=0.01  Score=48.87  Aligned_cols=72  Identities=14%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee--C--CCceEEEEEEec
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNS   64 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~   64 (243)
                      ..|+|+|+.+.+|...+  ...+.||+                    ...++.|||.++|+|.  +  ....|.|+||+.
T Consensus         8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            47899999999987512  23455555                    2467899999999874  2  245799999986


Q ss_pred             CCCC----------------CCceeeEEEEEchH
Q 038128           65 NTIT----------------GDDFIGSGKVQLTK   82 (243)
Q Consensus        65 ~~~~----------------~d~~IG~~~i~L~~   82 (243)
                      ....                ++..||.+.+.|-+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEc
Confidence            5321                24688888888776

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.58  E-value=0.014  Score=47.42  Aligned_cols=71  Identities=13%  Similarity=0.211  Sum_probs=51.5

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN   65 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~   65 (243)
                      +.|+|+|++++++...+   ..|.||+                   ...++.|||-++|.|.  +  ....|.|+||+.+
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            47899999999887543   3466766                   2257899999999874  2  2457999999865


Q ss_pred             CCC----CCceeeEEEEEchH
Q 038128           66 TIT----GDDFIGSGKVQLTK   82 (243)
Q Consensus        66 ~~~----~d~~IG~~~i~L~~   82 (243)
                      ..+    ....||.+.+.|-+
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             cccCCCCceEEEEEEEEEEEC
Confidence            321    23469999998876

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.19  E-value=0.027  Score=45.22  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee--C--CCceEEEEEEec
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNS   64 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~   64 (243)
                      ..|+|+|....++...+ ....+.||+                    .+.+..|||.++|.+.  +  .+..|.|+||+.
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            35677777777665411 112344444                    2367999999999873  2  245799999997


Q ss_pred             CCCC--CCceeeEEEEEchHh
Q 038128           65 NTIT--GDDFIGSGKVQLTKA   83 (243)
Q Consensus        65 ~~~~--~d~~IG~~~i~L~~l   83 (243)
                      +..+  ++..||.+.+.|-+.
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEcc
Confidence            7543  468999999998863

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.04  E-value=0.042  Score=41.65  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             CCCCCcccceEEEEeeCC--------CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCC--CCCceeecCCCCccceE
Q 038128           36 GGKNPTFQEKFMFPLIHG--------VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGY--DDNPWPLWTRSGKHAGE  105 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~--------~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~--~~~~~~L~~~~g~~~G~  105 (243)
                      .+.+|.+|.+-.|.|..+        ...|.||++..... ..++||.++|.|.+++....  ......|...+++.-|.
T Consensus        19 ~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~~~~~~g~   97 (107)
T PF11618_consen   19 RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGERIHGSATLVGVSGEDFGT   97 (107)
T ss_dssp             ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S--EEEEEEE-BSSS-TSEE
T ss_pred             eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCceEEEEEEEeccCCCeEEE
Confidence            688999999888888643        24599999987633 36799999999999986654  23456777777788999


Q ss_pred             EEEEEEEE
Q 038128          106 VNIILRCA  113 (243)
Q Consensus       106 L~l~l~~~  113 (243)
                      |+..+++.
T Consensus        98 l~y~~rl~  105 (107)
T PF11618_consen   98 LEYWIRLR  105 (107)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998875

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.02  E-value=0.025  Score=56.47  Aligned_cols=86  Identities=27%  Similarity=0.446  Sum_probs=61.6

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------------CCCCCcccc-eEEEE--eeCCCceEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------------GGKNPTFQE-KFMFP--LIHGVNEMNL   59 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------~~~nP~WnE-~f~f~--i~~~~~~L~v   59 (243)
                      ++=..+|.|+|+++.-|..++    ..-||.                      ++.||+|+| .|+|.  +......|+|
T Consensus       699 gvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi  774 (1189)
T KOG1265|consen  699 GVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI  774 (1189)
T ss_pred             ceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence            445678999999999887664    335655                      889999985 67776  3456678999


Q ss_pred             EEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK  101 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~  101 (243)
                      .|+++.    .+|||.-.++|+.|. .+.  +.+.|.+..+.
T Consensus       775 avyeEg----gK~ig~RIlpvd~l~-~GY--rhv~LRse~Nq  809 (1189)
T KOG1265|consen  775 AVYEEG----GKFIGQRILPVDGLN-AGY--RHVCLRSESNQ  809 (1189)
T ss_pred             eeeccC----Cceeeeeccchhccc-Ccc--eeEEecCCCCC
Confidence            999985    679999999998653 333  23445444443

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=95.93  E-value=0.1  Score=51.70  Aligned_cols=7  Identities=29%  Similarity=0.676  Sum_probs=2.7

Q ss_pred             CCCcccc
Q 038128           38 KNPTFQE   44 (243)
Q Consensus        38 ~nP~WnE   44 (243)
                      .+|.|+-
T Consensus       442 ~DPdf~y  448 (1102)
T KOG1924|consen  442 MDPDFKY  448 (1102)
T ss_pred             CCCCcch
Confidence            3344433

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.92  E-value=0.028  Score=46.08  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=51.7

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------C----------CCCCcccceEEEEee--C--CCceEEE
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------G----------GKNPTFQEKFMFPLI--H--GVNEMNL   59 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~----------~~nP~WnE~f~f~i~--~--~~~~L~v   59 (243)
                      ...|.|+|.++.++.........|.||.              .          .....|||.++|.+.  +  .+..|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            3467888989888876543333555655              1          124669999999874  2  2457999


Q ss_pred             EEEecCCCC---------CCceeeEEEEEchH
Q 038128           60 VVWNSNTIT---------GDDFIGSGKVQLTK   82 (243)
Q Consensus        60 ~V~d~~~~~---------~d~~IG~~~i~L~~   82 (243)
                      +||+....+         ++..||.+.+.|-+
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            999866543         35689999988775

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.71  E-value=0.035  Score=40.77  Aligned_cols=63  Identities=11%  Similarity=0.135  Sum_probs=44.9

Q ss_pred             CCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEE
Q 038128           37 GKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRC  112 (243)
Q Consensus        37 ~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~  112 (243)
                      ..+-.||++|+|++.. .++|+|.|+=+|   ...+.|...+.|++...    .....|     ...|.|..+++|
T Consensus        30 ~s~q~WDQ~Fti~LdR-sRELEI~VywrD---~RslCav~~lrLEd~~~----~~~~~l-----epqg~l~~ev~f   92 (98)
T cd08687          30 KSNQAWDQSFTLELER-SRELEIAVYWRD---WRSLCAVKFLKLEDERH----EVQLDM-----EPQLCLVAELTF   92 (98)
T ss_pred             cccccccceeEEEeec-ccEEEEEEEEec---chhhhhheeeEhhhhcc----cceecc-----ccccEEEEEEEe
Confidence            3478899999999863 568999998776   35678888888887322    122223     367888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=94.87  E-value=0.072  Score=50.76  Aligned_cols=61  Identities=21%  Similarity=0.426  Sum_probs=45.5

Q ss_pred             CCCCCcccceEEEEee-CCCceEEEEEEecCC----CCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           36 GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNT----ITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~----~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      +.+||.|.++|.+... +....|+|+++|.+.    +..++|+|++...|..++........+.|+
T Consensus        50 ~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~  115 (529)
T KOG1327|consen   50 NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLK  115 (529)
T ss_pred             ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcc
Confidence            8899999999888874 455678999988653    455789999999999987665443333333

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.78  E-value=0.1  Score=42.31  Aligned_cols=46  Identities=11%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             CCCCcccceEEEEee--C--CCceEEEEEEecCCCCCCceeeEEEEEchH
Q 038128           37 GKNPTFQEKFMFPLI--H--GVNEMNLVVWNSNTITGDDFIGSGKVQLTK   82 (243)
Q Consensus        37 ~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~   82 (243)
                      +....|||-++|.|.  +  .+..|.|+|||.+..++...||.+++.|-+
T Consensus        57 ~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          57 KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            456889999999884  2  245799999998765567799999998875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.77  E-value=0.16  Score=41.95  Aligned_cols=56  Identities=9%  Similarity=0.061  Sum_probs=35.3

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN   65 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~   65 (243)
                      ..++|+|.++.++ +.+.......||+                   -+.++.|||-++|.|.  +  ....|.|+||+..
T Consensus        10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            3677888777533 2222222334444                   3456889999999874  2  2457999999863

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=94.71  E-value=0.12  Score=51.80  Aligned_cols=78  Identities=13%  Similarity=0.122  Sum_probs=61.2

Q ss_pred             CCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc---cceEEEEEEEEEe
Q 038128           38 KNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK---HAGEVNIILRCAN  114 (243)
Q Consensus        38 ~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~---~~G~L~l~l~~~~  114 (243)
                      .++.|.+.|.+-+......+++++.+.+.++...++|.+++++..++.+.....|+.++..+++   ..-.+.+++.|..
T Consensus       162 e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~  241 (887)
T KOG1329|consen  162 ENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTP  241 (887)
T ss_pred             ccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCCcccceEEeeEe
Confidence            5789999998888888889999999999887788999999999998887777888888766553   2233444455544


Q ss_pred             c
Q 038128          115 V  115 (243)
Q Consensus       115 ~  115 (243)
                      .
T Consensus       242 ~  242 (887)
T KOG1329|consen  242 M  242 (887)
T ss_pred             e
Confidence            3

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.45  E-value=0.088  Score=47.07  Aligned_cols=103  Identities=16%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             cCceEEEEEEEeeCCCCCCC--CCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCC
Q 038128            7 QGQPLEVTVIACKGLKDTEW--LSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITG   69 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~--~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~   69 (243)
                      ..++|.|.+.++++|+....  .-..+.||+               .+.--.|.|+|++++.+ ...|.+-|+.|+.-.+
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~R  127 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQRR  127 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchhh
Confidence            46789999999999975332  224677888               34456799999998864 2356777877775555


Q ss_pred             CceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128           70 DDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        70 d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      ++++=.--|.+..+.... .+..+-|.   -+.+|.+.|+|.|..
T Consensus       128 HKLC~~g~l~~~~v~rqs-pd~~~Al~---lePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  128 HKLCHLGLLEAFVVDRQS-PDRVVALY---LEPRGQPPLRLPLAD  168 (442)
T ss_pred             ccccccchhhhhhhhhcC-Ccceeeee---cccCCCCceecccCC
Confidence            655433334444332222 22223222   236777777777653

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=92.95  E-value=0.53  Score=35.74  Aligned_cols=61  Identities=21%  Similarity=0.367  Sum_probs=43.2

Q ss_pred             eEEEEEEecCC---CCCCceeeEEEEEchHhhhc--------------CCCCCceeecCCCCccceEEEEEEEEEecC
Q 038128           56 EMNLVVWNSNT---ITGDDFIGSGKVQLTKAITQ--------------GYDDNPWPLWTRSGKHAGEVNIILRCANVW  116 (243)
Q Consensus        56 ~L~v~V~d~~~---~~~d~~IG~~~i~L~~l~~~--------------~~~~~~~~L~~~~g~~~G~L~l~l~~~~~~  116 (243)
                      .|.+.+|+...   .....+||.+.|+|.+++..              ......|.|.+..++..|+|.|.+|+.--.
T Consensus        30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsclG  107 (112)
T PF14924_consen   30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSCLG  107 (112)
T ss_pred             ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEecCc
Confidence            46666654322   34567999999999987621              122356889887778899999999987543

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.69  E-value=0.27  Score=38.80  Aligned_cols=46  Identities=13%  Similarity=0.241  Sum_probs=35.8

Q ss_pred             CCCcccceEEEEee----CCCceEEEEEEecCCCCCC----ceeeEEEEEchHh
Q 038128           38 KNPTFQEKFMFPLI----HGVNEMNLVVWNSNTITGD----DFIGSGKVQLTKA   83 (243)
Q Consensus        38 ~nP~WnE~f~f~i~----~~~~~L~v~V~d~~~~~~d----~~IG~~~i~L~~l   83 (243)
                      .++.|||.++|.|.    ..+..|.|+||+.+....+    ..||.+.+.|-+.
T Consensus        32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            68999999999973    2355799999998766544    6999999998763

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=92.42  E-value=0.47  Score=39.80  Aligned_cols=46  Identities=11%  Similarity=0.139  Sum_probs=32.8

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCC-CC---CceeeEEEEEch
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTI-TG---DDFIGSGKVQLT   81 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~-~~---d~~IG~~~i~L~   81 (243)
                      ...+|.|+|++.+.|...   ...|.|++.+.... .+   +..+|-+-++|-
T Consensus        62 h~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          62 QVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            788999999999999533   34688998764321 12   356888878775

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=92.12  E-value=0.59  Score=38.51  Aligned_cols=47  Identities=15%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC-C--CceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT-G--DDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~-~--d~~IG~~~i~L~~   82 (243)
                      .+.+|.|+|+|.+.|...   ...|.|++++...-. +  +..+|-+.++|.+
T Consensus        68 h~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   68 HNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             T-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             cCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            678999999999999643   336889998754322 1  2699999999886

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.73  E-value=0.94  Score=37.83  Aligned_cols=47  Identities=17%  Similarity=0.331  Sum_probs=33.1

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC-C-CceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT-G-DDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~-~-d~~IG~~~i~L~~   82 (243)
                      .+.+|.|+|+|.+.|...   ...|.|++++..... + ...+|-+-++|-+
T Consensus        62 H~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          62 HNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             cCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            788999999999999633   346888887643221 1 2568888777753

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=89.91  E-value=1.6  Score=32.38  Aligned_cols=29  Identities=10%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             CCCCcccceEEEEee--C--CCceEEEEEEecC
Q 038128           37 GKNPTFQEKFMFPLI--H--GVNEMNLVVWNSN   65 (243)
Q Consensus        37 ~~nP~WnE~f~f~i~--~--~~~~L~v~V~d~~   65 (243)
                      .....|||-++|.|.  +  ....|.|+||+..
T Consensus        59 ~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       59 FPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             CCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            345889999999874  2  2457999999864

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.29  E-value=3.4  Score=33.88  Aligned_cols=47  Identities=15%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCC-----CCCceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTI-----TGDDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~-----~~d~~IG~~~i~L~~   82 (243)
                      ...+|.|+|+|.+.|...   ...|.|++++...-     .....+|-+-++|.+
T Consensus        61 ~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          61 YHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             cCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            448999999999999543   33689999875422     236789999998875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=87.49  E-value=1.5  Score=35.69  Aligned_cols=44  Identities=14%  Similarity=0.231  Sum_probs=36.4

Q ss_pred             CcccceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhh
Q 038128           40 PTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAI   84 (243)
Q Consensus        40 P~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~   84 (243)
                      -.|+|+|.+.|..--..|.|+||.... ..+.+|+++.|+|-...
T Consensus        64 v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   64 VHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             EeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            456889999998767789999999987 46899999999977643

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=87.29  E-value=2.6  Score=38.41  Aligned_cols=66  Identities=8%  Similarity=0.192  Sum_probs=48.1

Q ss_pred             ceEEEEeeCCCceEEEEEEecCCCCCCceeeEEEEEchHhhhcC--CCCCceeecCCCCccceEEEEEEE
Q 038128           44 EKFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQG--YDDNPWPLWTRSGKHAGEVNIILR  111 (243)
Q Consensus        44 E~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~--~~~~~~~L~~~~g~~~G~L~l~l~  111 (243)
                      +...+.|..-+.+|+|.|+..... +...||.+.|.+++-+-+.  -.+.||.+. ++|+..++|.|++.
T Consensus       104 qRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~-kDGq~~cRIqLSFh  171 (508)
T PTZ00447        104 QRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINASVISKSFPKNEWFVCF-KDGQEICKVQMSFY  171 (508)
T ss_pred             eeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccHHHHhccCCccceEEEe-cCCceeeeEEEEeh
Confidence            444445555667899999988765 5788999999998754332  246788885 77888888888764

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=86.65  E-value=3.8  Score=33.88  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCCC------CCceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTIT------GDDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~~------~d~~IG~~~i~L~~   82 (243)
                      .+.+|.|+|+|.+.|.-.   ...|.|++++.+.-.      .+..+|-+-++|-+
T Consensus        63 Hnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          63 HNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            789999999999999533   335888887743211      13568877777654

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=81.21  E-value=13  Score=30.92  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=33.3

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCC--C-------CCCceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNT--I-------TGDDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~--~-------~~d~~IG~~~i~L~~   82 (243)
                      .+.+|.|.|+|.+.|.-.   ...|.|++++.+-  -       ..+..+|-+-++|-+
T Consensus        65 h~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          65 HNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             cCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            779999999999998533   3368888887541  1       113568888887764

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=80.41  E-value=14  Score=29.89  Aligned_cols=44  Identities=18%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             CCCCcccceEEEEeeCC----CceEEEEEEecCCCCCCceeeEEEEEc
Q 038128           37 GKNPTFQEKFMFPLIHG----VNEMNLVVWNSNTITGDDFIGSGKVQL   80 (243)
Q Consensus        37 ~~nP~WnE~f~f~i~~~----~~~L~v~V~d~~~~~~d~~IG~~~i~L   80 (243)
                      +..-.||.-|++.+...    -..|.|+||..|.++++.+.|=..+.|
T Consensus        54 ~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~l  101 (168)
T PF07162_consen   54 DDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHL  101 (168)
T ss_pred             CCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEe
Confidence            34577998888887422    237999999999999998887655544

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG4027 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.38  E-value=11  Score=30.50  Aligned_cols=41  Identities=15%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             cccceEEEEeeCCC----ceEEEEEEecCCCCCCceeeEEEEEch
Q 038128           41 TFQEKFMFPLIHGV----NEMNLVVWNSNTITGDDFIGSGKVQLT   81 (243)
Q Consensus        41 ~WnE~f~f~i~~~~----~~L~v~V~d~~~~~~d~~IG~~~i~L~   81 (243)
                      +||--|++.+....    ..|.+.|+.+|-+++|.+.|-..|.|-
T Consensus        65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP  109 (187)
T KOG4027|consen   65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP  109 (187)
T ss_pred             EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence            45555555543222    259999999999999999987776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	243
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		6e-06

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 11  LEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVN 55
           LEV +++ KGL+D ++L+  DPYV                 G  P + E F+F +  G  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 56  EMNLVVWNSNTITGDDFIGSGKVQLTKAITQG 87
           E+   +++ +  T DD +G   + L     +G
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-27
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	4e-14
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	4e-12
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	2e-10
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-10
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-09
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	2e-09
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	7e-08
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	7e-08
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-07
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-07
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-07
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-07
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	4e-07
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-07
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-07
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	5e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-04
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	9e-07
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	1e-06
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	1e-06
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-06
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	7e-04
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-06
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-06
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-06
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	4e-06
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	5e-06
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	5e-06
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	5e-06
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	5e-06
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	6e-06
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	7e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-05
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-05
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-05
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-05
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-04
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	3e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	7e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  101 bits (254), Expect = 2e-27
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV---------------YGGKNPTFQEKFMFPLIHGVN 55
           LEV +++ KGL+D ++L+  DPYV                 G  P + E F+F +  G  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 56  EMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILR 111
           E+   +++ +  T DD +G   + L     +G          +  ++ GE+ + L 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 67.2 bits (164), Expect = 4e-14
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 23/131 (17%)

Query: 1   MEAANVQGQPLEVTVIACKGLKDTEWLSKQDPYV---YGGK-----------NPTFQEKF 46
           M +  ++ Q L++TVI+ K  ++ +      PYV     G+           +P +++  
Sbjct: 29  MGSLTMKSQ-LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPL 87

Query: 47  MFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAI--TQGYDDNPW-PLWTRSGKH- 102
               +  V++++  VW+  T+  D  +G+  + + + +       +     L     K  
Sbjct: 88  TVI-VTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP 146

Query: 103 ---AGEVNIIL 110
               G+++I L
Sbjct: 147 TETIGDLSICL 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 65.2 bits (158), Expect = 2e-12
 Identities = 17/103 (16%), Positives = 22/103 (21%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAP 193
               ++   +  P+   PP  P A    Y     P     PS              H   
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGG 236
                        N P    + Y  P  P   G    Q     
Sbjct: 74  DQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.1 bits (155), Expect = 6e-12
 Identities = 13/106 (12%), Positives = 17/106 (16%), Gaps = 1/106 (0%)

Query: 132 MTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPG-PHPYGAPH 190
           M+       P                     P  P  +G        PP G     G   
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGG 236
                                  H +  P   P+           G
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 23/105 (21%), Positives = 26/105 (24%), Gaps = 4/105 (3%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQ--PPPSGYPQPSAYAPPPGPHPYGAPHP 191
           +      PA   P  DP       G  G PPQ   P  G  Q    A             
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 192 APGPYPYGAPPNQHPNGPPPGAHP--YGAPPGPPSYGYGAPQHGH 234
           +         P   PN       P   G P         AP +G 
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.1 bits (142), Expect = 3e-10
 Identities = 10/108 (9%), Positives = 15/108 (13%)

Query: 129 NTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA 188
            T +  PA    P     +            G  P                        +
Sbjct: 20  ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79

Query: 189 PHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGG 236
            +           PN +     P                 A       
Sbjct: 80  MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.5 bits (138), Expect = 8e-10
 Identities = 14/102 (13%), Positives = 19/102 (18%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAP 189
            GM+       P  + PS     +  PA    +      +           P   P    
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 190 HPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
            P            Q      P      A  G          
Sbjct: 98  QPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 17/108 (15%), Positives = 19/108 (17%), Gaps = 1/108 (0%)

Query: 135 PAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP-QPSAYAPPPGPHPYGAPHPAP 193
           P       +SY     PP       G      P      Q    A       +    P  
Sbjct: 32  PQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91

Query: 194 GPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDYILR 241
            P  Y  P      G P                  A          L 
Sbjct: 92  DPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.4 bits (130), Expect = 8e-09
 Identities = 12/100 (12%), Positives = 16/100 (16%), Gaps = 6/100 (6%)

Query: 139 HGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPY 198
           H     YP +               P   P+ +  P   A     +      P       
Sbjct: 3   HHKKRVYPQAQLQYGQNA------TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM 56

Query: 199 GAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGDY 238
           G      P           A                   Y
Sbjct: 57  GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 13/99 (13%), Positives = 17/99 (17%), Gaps = 3/99 (3%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPA 192
            +    +G     P    P             Q         +        H +  P   
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT---SMNDMHLHNVPLVD 92

Query: 193 PGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
           P  Y     P Q          P  AP            
Sbjct: 93  PNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 12/104 (11%), Positives = 16/104 (15%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
               P+      ++            A                P+AY  P  P   G P 
Sbjct: 50  QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
                        Q          P              P    
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITD 153

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 9/104 (8%), Positives = 16/104 (15%), Gaps = 1/104 (0%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
            M  P     P++       P                 +     +     P  +      
Sbjct: 44  QMGMPPQGAVPSMGQQQFLTPAQEQLHQQID-QATTSMNDMHLHNVPLVDPNAYMQPQVP 102

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
              G                  +   G    P +  Y       
Sbjct: 103 VQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTE 146

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 12/104 (11%), Positives = 16/104 (15%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
              +PA E        ++               P              P        A  
Sbjct: 60  QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGH 234
               P        +  N   P       PP         P    
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 27/125 (21%)

Query: 11  LEVTVIACKGLKDTEWLSKQ----------DPYV---------------YGGKNPTFQEK 45
           L V +    GL+ T W  +           DPY+                    PT+ E+
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90

Query: 46  FMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE 105
           F    +     + L V++   +  D F+ +  +Q  + +      + +  W       G+
Sbjct: 91  FCAN-VTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE-GK 148

Query: 106 VNIIL 110
           V +++
Sbjct: 149 VFVVI 153

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 25/124 (20%)

Query: 11  LEVTVIACKGL-KDTEWLSKQDPYV---YGGK-----------NPTFQEKFMFPLIHGVN 55
           L V V +   + K        DP V   +  +           NP + E   F L     
Sbjct: 9   LRVIVESASNIPKTKFGKP--DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 56  EMN----LVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW----TRSGKHAGEVN 107
           + +    ++V +  TI  +  IG+  V L           P+ L      +       ++
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 108 IILR 111
           +++ 
Sbjct: 127 LVIG 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 30/126 (23%)

Query: 11  LEVTVIACKGLKDTEWLSKQ-----------DPYV---------------YGGKNPTFQE 44
           L++ +     LK T W  +            DPY+                   +P + +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 45  KFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAG 104
           +F+   +    ++ L V++   I  DDF+ +  +Q  + +  G        W       G
Sbjct: 68  EFVTD-VCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF--EDWIDLEPE-G 123

Query: 105 EVNIIL 110
           +V +I+
Sbjct: 124 KVYVII 129

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 25/125 (20%)

Query: 11  LEVTVIACKGLKDT---EWLSKQDPYV---YGGK--------------NPTFQEKFMFPL 50
             V V+    +      + L   DPYV                     NP + E F F L
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 51  IHGV-NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNII 109
                N + + + ++N +  D+ +G+    ++        + P+     +      + + 
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF---NQVTEMVLEMS 120

Query: 110 LRCAN 114
           L  A+
Sbjct: 121 LEVAS 125

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 24/125 (19%)

Query: 11  LEVTVIACKGL--KDTEWLSKQDPYV---YGGK-----------NPTFQEKFMFPLIHGV 54
           L+V V+    L   D    S  DP+     G             NP + + F FP+    
Sbjct: 15  LQVKVLKAADLLAADFSGKS--DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH 72

Query: 55  NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHA--GEVNIILRC 112
           + + + V++ +     DF+G   + L   I  G   N + L  +  + A  G   I L  
Sbjct: 73  DVLEVTVFDEDGDKPPDFLGKVAIPLLS-IRDG-QPNCYVLKNKDLEQAFKGV--IYLEM 128

Query: 113 ANVWN 117
             ++N
Sbjct: 129 DLIYN 133

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 28/133 (21%)

Query: 7   QGQPLEVTVIACKGLKDTEWLSKQDPYV------YGGK--------------NPTFQEKF 46
             + + V VIA  GL   + L   DPYV                        NP + E+ 
Sbjct: 18  NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77

Query: 47  MFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW--------TR 98
           +F +    + +   V++ N +T DDF+G   V L    T+         +        + 
Sbjct: 78  LFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137

Query: 99  SGKHAGEVNIILR 111
             +  G + + + 
Sbjct: 138 KSRVKGYLRLKMT 150

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 49.2 bits (117), Expect = 7e-08
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 17/87 (19%)

Query: 9  QPLEVTVIACKGLKDTEWLSKQDPYV-------------YGGKNPTFQEKFMFPLIHGVN 55
            L V V   K     E   K + YV               G  P++++ FMF +     
Sbjct: 5  SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDL 61

Query: 56 EMNLVVWNSNTITGDDFIGSGKVQLTK 82
           + + VWN   I  D  +G+  + L  
Sbjct: 62 GLTVEVWNKGLI-WDTMVGTVWIPLRT 87

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 31/126 (24%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV---YGGK-----------NPTFQEKFMFPLIHGVNE 56
           + +TV+  +GL+  +     DPYV    G             NP ++E F F   +  + 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 57  MNLVVWN-----------SNTITGDDFIGSGKVQLTKAITQGYDDNPW-PLWTRSGKHA- 103
           + + V +                 DDF+G   +++ + ++   D   W  L  R+ K A 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV-RTLSGEMDV--WYNLDKRTDKSAV 135

Query: 104 -GEVNI 108
            G + +
Sbjct: 136 SGAIRL 141

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 24/111 (21%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEK 45
                 L VT+I    LK  +     DPYV       G+              NPT+ E 
Sbjct: 148 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 207

Query: 46  FMFPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPW 93
            +F +    V  + L   V + + I  ++ I  G  ++       +    W
Sbjct: 208 LVFDVAPESVENVGLSIAVVDYDCIGHNEVI--GVCRVGPEAADPHGREHW 256

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 28/133 (21%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----------------YGGKNPTFQEKFM 47
                 L V ++    L   +     DPYV                     NP F E F 
Sbjct: 16  LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75

Query: 48  FPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW------TR 98
           F +    + +  L   V++ +  +  D I  G+V L   +         PLW        
Sbjct: 76  FSVPLAELAQRKLHFSVYDFDRFSRHDLI--GQVVLDNLLELAEQPPDRPLWRDILEGGS 133

Query: 99  SGKHAGEVNIILR 111
                GE+N  L 
Sbjct: 134 EKADLGELNFSLC 146

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 20/126 (15%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----------------YGGKNPTFQEKFM 47
           + Q   L V +I    L   +     DPYV                     NP F E+F 
Sbjct: 15  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74

Query: 48  FPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAG 104
           F + +  +    LV  V++ +  +  D IG  KV +         +    L +   +   
Sbjct: 75  FKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134

Query: 105 EVNIIL 110
           ++  I 
Sbjct: 135 KLGDIC 140

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 24/96 (25%)

Query: 7   QGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEKFM 47
               L V ++  K LK  +     DPYV       GK              NP + E F 
Sbjct: 148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 207

Query: 48  FPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQL 80
           F +    + ++ +V  V + + I  +D I  GKV +
Sbjct: 208 FEVPFEQIQKVQVVVTVLDYDKIGKNDAI--GKVFV 241

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 28/101 (27%)

Query: 7   QGQPLEVTVIACKGL--KDTEWLSKQDPYV--Y-------GGK----------NPTFQEK 45
           +   L + V+  K L  +D    +  +PYV  Y         K          NPTF E 
Sbjct: 18  RNGTLFIMVMHIKDLVTEDG---ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEM 74

Query: 46  FMFPLIH--GVNEMNLV--VWNSNTITGDDFIGSGKVQLTK 82
            ++       + +  L   V ++ ++  + F+G   + L  
Sbjct: 75  LVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 28/129 (21%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV---YGGK-----------------NPTFQEKFMFPL 50
           + V VIA  GL   + L   DPYV                        NP + E+ +F +
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW--------TRSGKH 102
           +   + +   V++ N +T DDF+G   V L    T+         +        +   + 
Sbjct: 70  LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRV 129

Query: 103 AGEVNIILR 111
            G + + + 
Sbjct: 130 KGYLRLKMT 138

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 31/116 (26%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGK--------------------NPTFQE 44
           N Q   L V ++  + L   ++    DP+V   K                    NP + E
Sbjct: 22  NFQESTLTVKIMKAQELPAKDFSGTSDPFV---KIYLLPDKKHKLETKVKRKNLNPHWNE 78

Query: 45  KFMFPLIHG--VNEMNLV--VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96
            F+F       V +  L   V + +  + +D IG   + L K             W
Sbjct: 79  TFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL----TQMQTFW 130

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.6 bits (115), Expect = 7e-07
 Identities = 20/106 (18%), Positives = 21/106 (19%), Gaps = 7/106 (6%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPP---QPPPSGYPQPSAYAPPPGPHPYGAP 189
           T             S   P  HP  G G   P     P S    P     PP        
Sbjct: 18  TQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPM 77

Query: 190 HPAPGPYPYGAPPNQHPNGP----PPGAHPYGAPPGPPSYGYGAPQ 231
            P     P           P    P           PP    G  +
Sbjct: 78  GPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 24/105 (22%), Positives = 30/105 (28%), Gaps = 6/105 (5%)

Query: 122 YLSSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPS--GYPQPSAYAP 179
             SS    TG  S A        +PS  P    P   +        P     P  S  + 
Sbjct: 20  VNSSLTSPTGRGSMA----APSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISS 75

Query: 180 PPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
           P GPH    P      +  G+P    P  P   +     P G   
Sbjct: 76  PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 2/101 (1%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGY--GGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHP 191
           S     GP +  P     P    +    G  PP    S    P + + P  P    +   
Sbjct: 37  SLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGS 96

Query: 192 APGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQH 232
                P     +     PP G +     P  PS    +   
Sbjct: 97  PQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 14/103 (13%), Positives = 20/103 (19%), Gaps = 1/103 (0%)

Query: 135 PAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPG 194
              +   +    SS   P    +            G   P     P            P 
Sbjct: 10  DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP- 68

Query: 195 PYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGGD 237
           P+   + P    +   P     G   G P             D
Sbjct: 69  PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSED 111

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 24/97 (24%), Gaps = 2/97 (2%)

Query: 128 LNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYP-QPSAYAPPPGPHPY 186
           L  G+ SP   H P +S  SS      PP      P  P     P  P+       P   
Sbjct: 42  LGPGIGSPGQLHSP-ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLS 100

Query: 187 GAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPP 223
              +P         P   +     P            
Sbjct: 101 SPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTK 137

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 22/93 (23%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEK 45
           N     + V +I  + LK  +     DPYV     Y  K              NP F E 
Sbjct: 12  NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71

Query: 46  FMFPLIHG-VNEMNLV--VWNSNTITGDDFIGS 75
           F F +    + E  ++  V + + ++ +D IG 
Sbjct: 72  FAFDIPTEKLRETTIIITVMDKDKLSRNDVIGK 104

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEK 45
                 L V ++  K LK  +     DPYV       GK              NP + E 
Sbjct: 21  VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80

Query: 46  FMFPL-IHGVNEMNLV--VWNSNTITGDDFIGS 75
           F F +    + ++ +V  V + + I  +D IG 
Sbjct: 81  FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK 113

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 26/99 (26%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGK--------------------NPTFQE 44
           + Q   L V +I    L   +     DPYV   K                    NP F E
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYV---KVFLLPDKKKKFETKVHRKTLNPVFNE 86

Query: 45  KFMFPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQL 80
           +F F + +  +    LV  V++ +  +  D IG  KV +
Sbjct: 87  QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 25/102 (24%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV---------YGGK----------NPTFQEK 45
           +     L+ T+I  KGLK  +     DPYV            K          NP + E 
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84

Query: 46  FMFPLIHGVNEMN-----LVVWNSNTITGDDFIGSGKVQLTK 82
             +  I    +M      + V + +    ++FIG  +  L K
Sbjct: 85  LQYHGIT-EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 27/97 (27%), Positives = 28/97 (28%), Gaps = 12/97 (12%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAP 189
            G +S A     A                        PP GY  P    PP G  P G P
Sbjct: 356 AGESSDAAPSADAAQMKEMMAMMQKMQQQ----QAAYPPQGYAPPPQGYPPQGYPPQGYP 411

Query: 190 HPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYG 226
                P  Y  PP   P        P GAPP  P  G
Sbjct: 412 PQGYPPQGYPPPPQGAP--------PQGAPPAAPPQG 440

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 7/107 (6%)

Query: 132  MTSPAYEHGPAVSYPSSDPPPYHPPA-GYGGYPPQPPP-SGYPQPSAYAPPPGPHPYGAP 189
             TSP+Y        P+S  P Y P +  Y    P   P S    P++ +  P    Y   
Sbjct: 1615 PTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1672

Query: 190  HPA---PGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHG 233
             P+     P      P+  P  P          P  PSY   +P + 
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1719

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 4/125 (3%)

Query: 118  FLVLYLSSFILNTGMTSPAYEHGPAVSYPSSDPP----PYHPPAGYGGYPPQPPPSGYPQ 173
            F +      ++N  + +       +    S  P     PY             P +    
Sbjct: 1447 FDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFS 1506

Query: 174  PSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHG 233
            P       G   +G         PY    +     P   A   G     PSY   +P + 
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566

Query: 234  HGGDY 238
                Y
Sbjct: 1567 TSPAY 1571

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 6/107 (5%)

Query: 131  GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
               SP  + G        D       + Y G       S +    +         Y    
Sbjct: 1503 AAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSS 1562

Query: 191  PAPGPYPYGAP--PNQHPNGPP--PGAHPYGAPPGPPSYGYGAPQHG 233
            P     P   P  P+  P  P   P +  Y   P  PSY   +P + 
Sbjct: 1563 PGYSTSPAYMPSSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYS 1607

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 132  MTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHP 191
             TSP+Y        P+S       P+     P   P S    P++ +  P    Y    P
Sbjct: 1636 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695

Query: 192  APGPYPYGAPPNQHPNGPPPGAHPYGAP---PGPPSYGYGAPQH 232
            +  P      P      P   ++   +P   P  PSY   +P +
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 22/100 (22%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQ-DPYV-----------------YGGKNPTFQEKF 46
           N + +   V +   +GL   +  S   DPY+                     +P F E F
Sbjct: 18  NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77

Query: 47  MFPLIHG--VNEMNLV--VWNSNTITGDDFIGSGKVQLTK 82
            F  I    + E+ L   + + +  + DD IG   + L+ 
Sbjct: 78  TFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 26/99 (26%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYVYGGK--------------------NPTFQE 44
           + Q   L V +I    L   +     DPYV   K                    NP F E
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSDPYV---KVFLLPDKKKKFETKVHRKTLNPVFNE 94

Query: 45  KFMFPLIHG-VNEMNLV--VWNSNTITGDDFIGSGKVQL 80
           +F F + +  +    LV  V++ +  +  D IG  KV +
Sbjct: 95  QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 133

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 25/110 (22%)

Query: 3   AANVQGQPLEVTVIACKGL--KDTEWLSKQDPYV---------YGGK----------NPT 41
            A++  + L V V   K L   D   LS  DPYV            K          NP 
Sbjct: 25  QAHIDREVLIVVVRDAKNLVPMDPNGLS--DPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82

Query: 42  FQEKFMFPLIHGVNEMNLV--VWNSNTITGDDFIGSGKVQLTKAITQGYD 89
           + E F F L     +  L   +W+ +  + +DF+GS    +++    G D
Sbjct: 83  WNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD 132

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 29/110 (26%)

Query: 5   NVQGQPLEVTVIACKGL--KDTEWLSKQDPYV---------YGGK----------NPTFQ 43
           +  G  L VT++  K L  ++       +PYV            K           P + 
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPR--NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 71

Query: 44  EKFMFPLIHGVN----EMNLVVWNSNTITGD--DFIGSGKVQLTKAITQG 87
           + F++  +H        + + +W+   +  +  +F+G   ++L  A+   
Sbjct: 72  QTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 121

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 24/98 (24%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEK 45
           + Q   L V +I C  L   +     DP+V                       NP F E+
Sbjct: 33  STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92

Query: 46  FMFPL-IHGVNEMNLV--VWNSNTITGDDFIGSGKVQL 80
           F + +    + + +L   VW+ +    +D+I  G  QL
Sbjct: 93  FFYDIKHSDLAKKSLDISVWDYDIGKSNDYI--GGCQL 128

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 27/126 (21%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV----YGGK------------NPTFQEKFMFPLIHGV 54
           + +TV+  K L   ++    DP+      G              +P + + +    +   
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLY-VGKT 65

Query: 55  NEMNLVVWNSNTITGDD---FIGSGKVQLTKAITQGYDDNPWPLWTRSGKHA------GE 105
           + + + VWN   I       F+G  ++    AI++  D     L       +      G+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLS-NAISRLKDTGYQRLDLCKLNPSDTDAVRGQ 124

Query: 106 VNIILR 111
           + + L+
Sbjct: 125 IVVSLQ 130

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 30/116 (25%)

Query: 5   NVQGQPLEVTVIACKGL--KDTEWLSKQDPYV-----YGGK--------------NPTFQ 43
           + Q + L + +I  KGL  K        DPYV                       +P F 
Sbjct: 23  DAQDRVLLLHIIEGKGLISKQP---GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFH 79

Query: 44  EKFMFPLIHGV--NEMNLVVWNSNTITG-DDFIGSGKVQLTKAITQGYDDNPWPLW 96
           E F FP+        + + VWN  + +     IG     +   +T    D     W
Sbjct: 80  EHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT---PDKEISGW 132

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 25/123 (20%)

Query: 3   AANVQGQPLEVTVIACKGLKDTEWLSKQDPYV-------------YGGKNPTFQEKFMFP 49
                   L V V   K     E   K + YV               G  P++++ FMF 
Sbjct: 8   GGGGILSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFE 64

Query: 50  LIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNP----W-PLWTRSGKHAG 104
           +      + + VWN   I  D  +G+  + L         +      W  L +++     
Sbjct: 65  INRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIR---QSNEEGPGEWLTLDSQAIMADS 120

Query: 105 EVN 107
           E+ 
Sbjct: 121 EIC 123

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 22/93 (23%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----YGGK--------------NPTFQEK 45
                 L V V+  + L  ++     DPYV     +  K              N  F E 
Sbjct: 26  QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 85

Query: 46  FMFPLIHG-VNEMNLV--VWNSNTITGDDFIGS 75
           F+F +    + E+++   V +S   + ++ IG 
Sbjct: 86  FVFDIPCESLEEISVEFLVLDSERGSRNEVIGR 118

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 30/127 (23%)

Query: 5   NVQGQPLEVTVIACKGL--KDTEWLSKQDPYV--Y-------GGK----------NPTFQ 43
             Q Q L V V  C  L   D E   + +PYV  Y        GK          NP + 
Sbjct: 19  EQQTQSLVVHVKECHQLAYAD-EAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYD 77

Query: 44  EKFMFPLIHGVNE---MNLVVWNSNTITGDDFIGS-----GKVQLTKAITQGYDDNPWPL 95
           E   + +   +     +   VW+      + F+G         +L K +      +    
Sbjct: 78  ETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137

Query: 96  WTRSGKH 102
               G H
Sbjct: 138 AESEGHH 144

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 2/113 (1%)

Query: 124  SSFILNTGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGP 183
            + +   +G+ +   +    + +        +     G         G       A    P
Sbjct: 1471 TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAP 1530

Query: 184  HPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGG 236
               G    +PG  P    P   P  P          P  PSY   +P +    
Sbjct: 1531 TSPGFGVSSPGFSPTS--PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1581

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 25/124 (20%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 131  GMTSPAYEHGPAVSYPSSDPPPYHPPAG-----YGGYPPQPPPSGYPQPS-AYAPP---- 180
             M SP  + G   +             G     +G Y   P   G+   S  ++P     
Sbjct: 1490 LMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTY 1549

Query: 181  --------PGPHPYGAPHPAPGP-YPYGAP--PNQHPNGPPPGAHPYGAPPGPPSYGYGA 229
                    P    Y    P+  P  P  +P  P+  P  P          P  PSY   +
Sbjct: 1550 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1609

Query: 230  PQHG 233
            P + 
Sbjct: 1610 PSYS 1613

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 131  GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
              TSP+Y        P+S       P+     P   P S    P++ +  P    Y    
Sbjct: 1606 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1665

Query: 191  PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
            P+  P      P+  P  P          P  P+Y   +P 
Sbjct: 1666 PSYSP----TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPS 1702

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 28/113 (24%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 133  TSPAYE-----HGPAVSYPSSDPPPYHPPAGYGGYPPQPP------PSGYPQPSAYAPP- 180
            TSP+Y      + P     S   P Y P      Y P  P      PS  P   +Y+P  
Sbjct: 1573 TSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630

Query: 181  PGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHG 233
            P   P    +    P      P+  P  P          P  PSY   +P + 
Sbjct: 1631 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1683

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 38/120 (31%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQ-------DPYVYGGK------------------- 38
           ++    L V VI  + L                +PYV   K                   
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYV---KICLLPDQKNSKQTGVKRKT 78

Query: 39  -NPTFQEKFMFPL-IHGVNEMNLV--VWNSNTITGDDFIGS-----GKVQLTKAITQGYD 89
             P F+E++ F +         L+  V + +  +    IG       +V L K       
Sbjct: 79  QKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 23/112 (20%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV--------------------YGGKNPTFQE 44
           + + +   + +I    L        Q   +                           F E
Sbjct: 39  DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNE 98

Query: 45  KFMFPLIHGVNEM---NLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPW 93
            F   + +         + V  ++    ++ +G  ++ L +    G     W
Sbjct: 99  VFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRW 150

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 29/110 (26%)

Query: 5   NVQGQPLEVTVIACKGL--KDTEWLSKQDPYV---------YGGK----------NPTFQ 43
           +  G  L VT++  K L  ++       +PYV            K           P + 
Sbjct: 17  DKVGHQLIVTILGAKDLPSREDGRPR--NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWN 74

Query: 44  EKFMFPLIHGVN----EMNLVVWNSNTITGD--DFIGSGKVQLTKAITQG 87
           + F++  +H        + + +W+   +  +  +F+G   ++L  A+   
Sbjct: 75  QTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD 124

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 29/111 (26%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV--Y----GGK------------NPTFQEKF 46
           + Q   L VT +      + +     D YV        G             + T++E  
Sbjct: 22  DCQKAELFVTRLEAVTS-NHDGGC--DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGL 78

Query: 47  MFPLIHG-VNEMNLV--VWNSNTITGDDFIGS-----GKVQLTKAITQGYD 89
           + PL    +    L   +   +  +     G          +     Q  +
Sbjct: 79  VLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 40/120 (33%)

Query: 11  LEVTVIACKGL--KDTEWLSKQDPYV------------------YGGK----------NP 40
           L + ++  + L  +D    S  DP+V                     K          NP
Sbjct: 20  LIIHILQARNLVPRDNNGYS--DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 41  TFQEKFMFPLIHGVNEMN----LVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW 96
            + +  ++  I     M     + VW+ +  + +DF+G   + L+         +  P W
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS----HLDNTPRW 133

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 20/104 (19%), Positives = 24/104 (23%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAP 189
             +       GP +   +    P   P          P  G   PS     P      A 
Sbjct: 93  ARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152

Query: 190 HPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHG 233
             A         P Q+P G      P G    PP      P   
Sbjct: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMR 196

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 19/98 (19%), Positives = 20/98 (20%)

Query: 139 HGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPY 198
            G          P                 +G P          P P G   P PG    
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191

Query: 199 GAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQHGHGG 236
                     P       G P G P  G   P  G  G
Sbjct: 192 PPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 22/101 (21%), Positives = 26/101 (25%)

Query: 131 GMTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPH 190
           G+   A    PA       P     P    G P Q   +   + +  A         A  
Sbjct: 105 GIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGA 164

Query: 191 PAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAPQ 231
           P   P   G PP     G PP       P   P  G     
Sbjct: 165 PTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 34/132 (25%), Positives = 42/132 (31%), Gaps = 41/132 (31%)

Query: 5   NVQGQPLEVTVIACKGL--KDTEWLSKQDPYV--Y-------GGK----------NPTFQ 43
           + Q   L V V AC+ L           DPYV  Y        G+          NP F 
Sbjct: 20  SSQRNKLIVVVHACRNLIAFS---EDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFD 76

Query: 44  EKFMFPLIHG-VNEMNLV--VWNSNTITGDD--FIGS-----GKVQLTKAITQGYDDNPW 93
           + F F +    V    L   V NS      D   +G         +L K  TQ      W
Sbjct: 77  QSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ------W 130

Query: 94  -PLWTRSGKHAG 104
             L   SG  +G
Sbjct: 131 YDLTEDSGPSSG 142

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 23/105 (21%), Positives = 28/105 (26%), Gaps = 8/105 (7%)

Query: 133 TSPAYEHGPAVSYP----SSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA 188
           +S  + H  +   P       P      A         PP   P P+   PPP P     
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP-PPPPAPAAGNP 61

Query: 189 PHPAPG---PYPYGAPPNQHPNGPPPGAHPYGAPPGPPSYGYGAP 230
           P    G          P          A  YG  PGP +     P
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPP 106

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 22/100 (22%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 130 TGMTSPAYEHGPAVSYPSSDPPPYHPPAGYGG---YPPQPPPSGYPQPSAYAP------P 180
           + M  P+     A    S      HPP         PP  P +G P  +           
Sbjct: 19  SHMVIPSASVTSA---ASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75

Query: 181 PGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHPYGAPP 220
            GP   G    AP       P  + P   PP A       
Sbjct: 76  RGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGL 115

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 21/97 (21%)

Query: 7   QGQPLEVTVIACKGLKDTEWLSKQ-DPYV-----YGGK--------------NPTFQEKF 46
           +   LEV VI  + L           PYV       G               +P +Q+  
Sbjct: 28  KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87

Query: 47  MFPLIHGVNEMNLVVWNS-NTITGDDFIGSGKVQLTK 82
           +F        + ++VW     +    F+G  ++ L +
Sbjct: 88  VFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 15/117 (12%), Positives = 35/117 (29%), Gaps = 27/117 (23%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPY------------------VYGGKNPTFQEKFMFPLIH 52
           L++ +I  + L       K+  Y                     G    + E F F  + 
Sbjct: 13  LKLWIIEARELP-----PKKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 53  GVNEMNLVVWNSNTITG----DDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGE 105
            V  + L ++  +          ++G   V +     + + +  +P+   +G     
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSG 124

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 156 PAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHPNGPPPGAHP 215
              +      P  S  PQ   YA P G       +   G   YG P     +G   G + 
Sbjct: 6   HHHHHSSGLVPRGSHMPQGGGYAEPAGRDY---DYGQSGAPDYGQPAPGGYSGYGQGGYG 62

Query: 216 YGAPP 220
                
Sbjct: 63  SAGTS 67

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 1/65 (1%)

Query: 147 SSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHPAPGPYPYGAPPNQHP 206
           SS    +H           P   GY +P+      G       +  P P  Y        
Sbjct: 3   SSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGA-PDYGQPAPGGYSGYGQGGY 61

Query: 207 NGPPP 211
                
Sbjct: 62  GSAGT 66

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 11/108 (10%), Positives = 21/108 (19%), Gaps = 5/108 (4%)

Query: 132 MTSPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHP 191
           +   A         P    P       +G          +P  +  +  P P+       
Sbjct: 36  LNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESI 95

Query: 192 APGPYPYGAPPNQHPNGPPP-----GAHPYGAPPGPPSYGYGAPQHGH 234
               Y      +   + P          P           Y   +  +
Sbjct: 96  MGYSYMDSYQTSSPASIPHLILELLKCEPDEPQVQAKIMAYLQQEQAN 143

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 134 SPAYEHGPAVSYPSSDPPPYHPPAGYGGYPPQPPPSGYPQPSAYAPPPGPHPYGA----P 189
           S A ++  + S          PP  Y   P    P     P       G   YG      
Sbjct: 21  SSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH-GSLQGYQTYGHFPSRA 79

Query: 190 HPAPGPYPYGAPPNQHPNGPPPGAHPYGAPPGPP 223
             +  P PY + P          ++   +P   P
Sbjct: 80  IKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP 113

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 39.2 bits (91), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 2/93 (2%)

Query: 133 TSPAYEHGPAVSYPSSDPPPYHPPA-GYGGYPPQPPPSGYPQPSAYAPPPGPHPYGAPHP 191
            S   +  P+    SS     H  + G        PP+ Y + S +   P          
Sbjct: 7   MSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDR-SPFVTSPISMTMPPHGS 65

Query: 192 APGPYPYGAPPNQHPNGPPPGAHPYGAPPGPPS 224
             G   YG  P++      P  +          
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGY 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.87
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.85
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.84
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.83
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.83
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.81
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.79
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.78
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.77
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.76
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.75
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.74
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.74
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.74
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.74
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.74
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.73
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.73
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.73
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.73
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.72
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.72
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.71
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.71
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.71
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.7
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.69
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.69
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.67
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.67
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.67
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.66
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.66
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.65
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.63
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.58
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.53
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.49
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.49
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.46
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.43
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.34
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.11
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.09
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.04
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.02
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.0
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.58
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.47
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.12
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	91.92
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	86.95
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	85.41

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.87  E-value=1.1e-21  Score=152.90  Aligned_cols=111  Identities=25%  Similarity=0.493  Sum_probs=98.6

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGD   70 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d   70 (243)
                      ...++|+|+|++|++|..++..+++||||+               ++.||+|||+|.|.+.+....|+|+|||++.+++|
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~~d   86 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED   86 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTT
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCCCC
Confidence            456799999999999999999999999998               47899999999999988777899999999999999


Q ss_pred             ceeeEEEEEchHhhhcC-CCCCceeecCCCCccceEEEEEEEEEecCC
Q 038128           71 DFIGSGKVQLTKAITQG-YDDNPWPLWTRSGKHAGEVNIILRCANVWN  117 (243)
Q Consensus        71 ~~IG~~~i~L~~l~~~~-~~~~~~~L~~~~g~~~G~L~l~l~~~~~~~  117 (243)
                      ++||++.|+|.+++..+ ....||.|. ++++..|+|+|+|+|.+...
T Consensus        87 ~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           87 DAVGEATIPLEPVFVEGSIPPTAYNVV-KDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CCSEEEEEESHHHHHHSEEEEEEEEEE-ETTEEEEEEEEEEEEEECCS
T ss_pred             ceEEEEEEEHHHhccCCCCCcEEEEee-cCCccCEEEEEEEEEEeCCC
Confidence            99999999999996543 345799998 56788999999999999755

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.3e-21  Score=150.89  Aligned_cols=111  Identities=21%  Similarity=0.324  Sum_probs=95.4

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC----CCceEEEEEEecCCC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWNSNTI   67 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d~~~~   67 (243)
                      ...++|+|+|++|++|..++. +++||||+              ++.||+|||+|+|.+..    ....|+|+|||++.+
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~   82 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI   82 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence            456799999999999999998 99999999              77899999999999964    346899999999999


Q ss_pred             CCCceeeEEEEEchHhhhcCCCCCcee---ecCCCC-ccceEEEEEEEEEecCC
Q 038128           68 TGDDFIGSGKVQLTKAITQGYDDNPWP---LWTRSG-KHAGEVNIILRCANVWN  117 (243)
Q Consensus        68 ~~d~~IG~~~i~L~~l~~~~~~~~~~~---L~~~~g-~~~G~L~l~l~~~~~~~  117 (243)
                      ++|++||++.|+|.+|........|+.   |...++ +..|+|+|+|+|.+...
T Consensus        83 ~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           83 GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            999999999999999877666677877   665444 56799999999998543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.85  E-value=9.7e-21  Score=150.49  Aligned_cols=109  Identities=27%  Similarity=0.398  Sum_probs=88.4

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCCCceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~   65 (243)
                      ...++|+|+|++|++|..++..+++||||+                    ++.||+|||+|.|.+......|+|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            356699999999999999998899999998                    578999999999999877778999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCC------CCceeecCCC--CccceEEEEEEEEEe
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYD------DNPWPLWTRS--GKHAGEVNIILRCAN  114 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~------~~~~~L~~~~--g~~~G~L~l~l~~~~  114 (243)
                      .+++|++||++.|+|.++......      ..|+.|..++  .+..|+|+|+|+|.+
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            999999999999999998765533      4789987653  357899999999964

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=5.7e-21  Score=149.30  Aligned_cols=104  Identities=23%  Similarity=0.451  Sum_probs=89.7

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCC-----------CCcEEe---------------CCCCCcccceEEEEeeCCCceEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSK-----------QDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNL   59 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~-----------~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v   59 (243)
                      ...++|+|+|++|++|..++..++           +||||+               ++.||+|||+|+|.+.+. ..|+|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~   81 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEE
Confidence            456899999999999998875544           899999               788999999999999755 78999


Q ss_pred             EEEecCCCCCCceeeEEEEEchHhhhcCC--CCCceeecCCCCccceEEEEEEEEEec
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKAITQGY--DDNPWPLWTRSGKHAGEVNIILRCANV  115 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~--~~~~~~L~~~~g~~~G~L~l~l~~~~~  115 (243)
                      +|||++.+++|++||++.|+|.++.....  .+.|+.|.     ..|+|+|+|+|...
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~-----~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC-----CCeEEEEEEEEEec
Confidence            99999999999999999999999876532  25788876     47999999999864

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.4e-20  Score=146.39  Aligned_cols=105  Identities=19%  Similarity=0.328  Sum_probs=93.2

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ..++|+|+|++|++|..++..+++||||+              ++.||+|||+|.|.+.+....|+|+|||++.+++|++
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~~~~~   90 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   90 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCCCCCe
Confidence            56799999999999999999999999998              7889999999999998777789999999999988999


Q ss_pred             eeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEEE
Q 038128           73 IGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRCA  113 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~~  113 (243)
                      ||++.|+|.++...  ...|+.|..++.  +..|+|+|+|+|.
T Consensus        91 lG~~~i~l~~l~~~--~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           91 LGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             CCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             eEEEEEEHHHccCC--CceEEEeecCCCCCccceEEEEEEEEE
Confidence            99999999998543  357999986543  5789999999985

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.84  E-value=4.1e-20  Score=146.08  Aligned_cols=107  Identities=22%  Similarity=0.418  Sum_probs=93.0

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC----
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI----   67 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~----   67 (243)
                      .-.++|+|+|++|++|..++..+++||||+              ++.||+|||+|.|.+......|+|+|||++.+    
T Consensus        14 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~~   93 (148)
T 3kwu_A           14 KWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKSR   93 (148)
T ss_dssp             -CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHHH
T ss_pred             ccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCcccc
Confidence            446899999999999999999999999998              78999999999999987778899999999986    


Q ss_pred             -------CCCceeeEEEEEchHhhhcCCCCCceeecCCCC--ccceEEEEEEEEEe
Q 038128           68 -------TGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG--KHAGEVNIILRCAN  114 (243)
Q Consensus        68 -------~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g--~~~G~L~l~l~~~~  114 (243)
                             ++|+|||++.|+|.++  ......|+.|..+..  +..|+|+|+|+|+.
T Consensus        94 ~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           94 VKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             HHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             ccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence                   7899999999999987  334568999985443  46799999999974

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.83  E-value=9.9e-21  Score=152.36  Aligned_cols=102  Identities=21%  Similarity=0.340  Sum_probs=88.4

Q ss_pred             ccCceEEEEEEEeeCCCCCCC----------CCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEW----------LSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLV   60 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~----------~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~   60 (243)
                      ...+.|+|+|++|++|..+|+          .+++||||+               +++||+|||+|+|.+.+ ...|+|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            456799999999999998873          256899999               78999999999999965 4589999


Q ss_pred             EEecCCCCCCceeeEEEEEchHhhhc----CCCCCceeecCCCCccceEEEEEEEEE
Q 038128           61 VWNSNTITGDDFIGSGKVQLTKAITQ----GYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        61 V~d~~~~~~d~~IG~~~i~L~~l~~~----~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      |||++.+++|+|||++.|+|++|...    ...+.||+|.     ..|+|+|+++|.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-----~~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-----PEGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-----SSCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-----CCcEEEEEEEEE
Confidence            99999999999999999999999865    4456899996     379999999884

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.83  E-value=4.3e-20  Score=150.47  Aligned_cols=110  Identities=26%  Similarity=0.398  Sum_probs=88.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCCCceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~   65 (243)
                      -..++|+|+|++|++|..++..+++||||+                    +++||+|||+|.|.+......|+|+|||++
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d   84 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDEN   84 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECC
Confidence            457899999999999999999999999998                    688999999999999877778999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCC------CCceeecCCC--CccceEEEEEEEEEec
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYD------DNPWPLWTRS--GKHAGEVNIILRCANV  115 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~------~~~~~L~~~~--g~~~G~L~l~l~~~~~  115 (243)
                      .+++|+|||++.|+|.+|......      ..||.|..+.  ++..|+|+|+|+|.+.
T Consensus        85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            999999999999999998765432      1688888654  3568999999999987

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.81  E-value=2.7e-19  Score=138.80  Aligned_cols=106  Identities=15%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITG   69 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~   69 (243)
                      .+..+|+|+|++|++|..++..+++||||+                +++||+|||+|.|.+.... .|+|+|||++.+++
T Consensus         2 ~~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHK   80 (132)
T ss_dssp             CSEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTS
T ss_pred             CCeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCC
Confidence            355689999999999999999999999998                7889999999999997654 49999999999876


Q ss_pred             ---CceeeEEEEEchHhhhc-CCCCCceeecCCCC----ccceEEEEEEEE
Q 038128           70 ---DDFIGSGKVQLTKAITQ-GYDDNPWPLWTRSG----KHAGEVNIILRC  112 (243)
Q Consensus        70 ---d~~IG~~~i~L~~l~~~-~~~~~~~~L~~~~g----~~~G~L~l~l~~  112 (243)
                         |+|||++.|+|++|... .....|+.|..++.    +..|+|+|+|++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               89999999999988433 44457888876532    358999999875

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=8.9e-19  Score=142.95  Aligned_cols=108  Identities=18%  Similarity=0.326  Sum_probs=89.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ..++|+|+|++|++|...+..+++||||+              +++||+|||+|.|.+.. ...|+|+|||++.+++|+|
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            56789999999999995444556999999              78899999999999854 6789999999999999999


Q ss_pred             eeEEEEEchHhhhcCCC-----CCceeecCCC--CccceEEEEEEEEEec
Q 038128           73 IGSGKVQLTKAITQGYD-----DNPWPLWTRS--GKHAGEVNIILRCANV  115 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~-----~~~~~L~~~~--g~~~G~L~l~l~~~~~  115 (243)
                      ||++.|+|.+|+.....     ..|+.|...+  .+..|+|.|+|++...
T Consensus       113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            99999999999764321     3588888653  3578999999998865

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.78  E-value=4.3e-19  Score=136.26  Aligned_cols=100  Identities=19%  Similarity=0.348  Sum_probs=82.1

Q ss_pred             CceEEEEEEEeeCCCCC---CCCCCCCcEEe-----------------CCCCCcccceEEEEee-CCCceEEEEEEecCC
Q 038128            8 GQPLEVTVIACKGLKDT---EWLSKQDPYVY-----------------GGKNPTFQEKFMFPLI-HGVNEMNLVVWNSNT   66 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~---~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~-~~~~~L~v~V~d~~~   66 (243)
                      .++|+|+|++|++|..+   +..+++||||+                 ++.||+|||+|.|.+. .....|+|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            57899999999999984   66788999998                 6789999999999995 445689999999998


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEE
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                      + +|++||++.|+|.++........|+.|..     .+++.|+|++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-----~~~g~i~~~le  122 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-----VTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-----TEEEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC-----CceEEEEEEEE
Confidence            8 49999999999999876665678999973     34444444443

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.77  E-value=8e-19  Score=139.78  Aligned_cols=104  Identities=22%  Similarity=0.386  Sum_probs=85.8

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe--eCCCceEEEEEEe
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL--IHGVNEMNLVVWN   63 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i--~~~~~~L~v~V~d   63 (243)
                      ....++|+|+|++|++|..++ .+++||||+                   ++.||+|||+|.|.+  .+....|+|+|||
T Consensus        23 ~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d  101 (153)
T 3fbk_A           23 DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWN  101 (153)
T ss_dssp             EESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEe
Confidence            346789999999999999988 689999997                   688999999999999  3444579999999


Q ss_pred             cCCCCC-CceeeEEEEEchHhhh-cCCCCCceeecCCCCccceEEEEE
Q 038128           64 SNTITG-DDFIGSGKVQLTKAIT-QGYDDNPWPLWTRSGKHAGEVNII  109 (243)
Q Consensus        64 ~~~~~~-d~~IG~~~i~L~~l~~-~~~~~~~~~L~~~~g~~~G~L~l~  109 (243)
                      ++.+++ |+|||++.|+|.+|.. ......||.|...+....+.|++.
T Consensus       102 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g~~~~lkv~  149 (153)
T 3fbk_A          102 RASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA  149 (153)
T ss_dssp             CCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGGGTCCCBCC
T ss_pred             CCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhcccccceec
Confidence            999877 9999999999999875 455678999997655444555444

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=2.1e-18  Score=134.48  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceee
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIG   74 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG   74 (243)
                      -+.|+|+|++|++|..   .+++||||+             ++.||+|||+|.|.+.+....|+|+|||+| +++|+|||
T Consensus         4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG   79 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVG   79 (131)
T ss_dssp             CEEEEEEEEEEECSSC---GGGCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEEE
T ss_pred             ceEEEEEEEEeECCCC---CCCcCeEEEEEecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeEE
Confidence            3689999999998853   578999998             589999999999999877778999999999 88999999


Q ss_pred             EEEEEchHhhhcCCCC------CceeecCCCCccceE-------EEEEEEEE
Q 038128           75 SGKVQLTKAITQGYDD------NPWPLWTRSGKHAGE-------VNIILRCA  113 (243)
Q Consensus        75 ~~~i~L~~l~~~~~~~------~~~~L~~~~g~~~G~-------L~l~l~~~  113 (243)
                      ++.|+|.++.......      .|+.+..++++..|+       |.++++|+
T Consensus        80 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~  131 (131)
T 2cjt_A           80 TVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  131 (131)
T ss_dssp             EEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             EEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence            9999999986554211      234444445555554       88888874

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.75  E-value=4.2e-18  Score=134.66  Aligned_cols=94  Identities=22%  Similarity=0.411  Sum_probs=81.9

Q ss_pred             cCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ..++|+|+|++|+||..++ ..+++||||+                   ++.||+|||+|.|.+...   ...|+|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4679999999999999888 6788999998                   688999999999999654   3469999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      ++.+++|++||++.|+|.++........|+.|..+..
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  137 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS  137 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCccceEECcCccc
Confidence            9999899999999999999987777788999996543

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.74  E-value=3.4e-18  Score=133.36  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=80.1

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEE-eeC---CCceEEEEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFP-LIH---GVNEMNLVV   61 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~-i~~---~~~~L~v~V   61 (243)
                      +...++|+|+|++|+||.. +..+++||||+                   +++||+|||+|.|. +..   ....|+|+|
T Consensus        16 ~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           16 SYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             EEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred             eecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence            3567899999999999997 77889999997                   67899999999999 753   346899999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      ||++.+++|++||++.|+|.++........|+.|..
T Consensus        95 ~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~  130 (134)
T 2b3r_A           95 LSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA  130 (134)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred             EECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence            999999999999999999999876666678999975

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.74  E-value=2.8e-18  Score=134.72  Aligned_cols=92  Identities=24%  Similarity=0.317  Sum_probs=81.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ...++|+|+|++|++|..++..+++||||+                 ++.||+|||+|.|.+...   ...|+|+|||++
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            367899999999999999998899999998                 678999999999998633   368999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      .+++|++||++.|+|.++........|+.|..
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            99999999999999999876666678998863

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=8e-18  Score=131.89  Aligned_cols=92  Identities=22%  Similarity=0.285  Sum_probs=81.1

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC----CCceEEEEEEecC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWNSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d~~   65 (243)
                      ..++|+|+|++|++|..++..+++||||+                 ++.||+|||+|.|.+..    ....|+|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            67899999999999999999999999998                 67899999999999632    2467999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      .+++|++||++.|+|.++........|+.|...
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            999999999999999998776666789999854

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=6.6e-18  Score=134.23  Aligned_cols=91  Identities=24%  Similarity=0.320  Sum_probs=80.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecCC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNT   66 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~   66 (243)
                      ..++|+|+|++|+||..++..+++||||+                 ++.||+|||+|.|.+...   ...|+|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            56799999999999999999999999998                 678999999999998642   4689999999999


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +++|++||++.|+|.++........|+.|..
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            9899999999999999866555678999874

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.5e-17  Score=131.59  Aligned_cols=91  Identities=24%  Similarity=0.368  Sum_probs=80.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEec
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNS   64 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~   64 (243)
                      ...++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+...  ...|+|+|||+
T Consensus        28 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~  107 (149)
T 1a25_A           28 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW  107 (149)
T ss_dssp             ESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             ecCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence            346789999999999999999999999998                   678999999999999653  35799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +.+++|++||++.|+|.+|... ....||.|..
T Consensus       108 d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~  139 (149)
T 1a25_A          108 DLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  139 (149)
T ss_dssp             CSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             CCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence            9999999999999999998765 3567999985

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=8.7e-18  Score=131.71  Aligned_cols=95  Identities=26%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||..++..+ +||||+                   ++.||+|||+|.|.+...   ...|+|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            4678999999999999999888 999998                   678999999999998542   34899999999


Q ss_pred             CCCCC--CceeeEEEEEchHhhhcCCCCCceeecCCCCcc
Q 038128           65 NTITG--DDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH  102 (243)
Q Consensus        65 ~~~~~--d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~  102 (243)
                      +.+++  |++||++.|+|.++........|+.|.....+.
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~~~  140 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSGPS  140 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCSCC
T ss_pred             CCccccCCcEEEEEEEecccccccccccceeeccCCCCCC
Confidence            98863  579999999999887666677899998655443

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.73  E-value=6.7e-18  Score=137.06  Aligned_cols=93  Identities=22%  Similarity=0.338  Sum_probs=81.6

Q ss_pred             cCceEEEEEEEeeCCCCCCC-CCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEE-ecC
Q 038128            7 QGQPLEVTVIACKGLKDTEW-LSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVW-NSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~-~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~-d~~   65 (243)
                      ..++|+|+|++|++|..++. .+++||||+                   ++.||+|||+|+|.+......|+|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            57899999999999999985 689999998                   678999999999999766678999999 999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      .+++|+|||++.|+|.++........||.|...+
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  141 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPS  141 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence            9999999999999999987666677899998654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=1.3e-17  Score=130.13  Aligned_cols=92  Identities=21%  Similarity=0.428  Sum_probs=79.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eCC---CceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IHG---VNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~~---~~~L~v~V~d   63 (243)
                      ..+.|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+ ...   ...|+|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            46789999999999999999999999998                   678999999999995 322   3589999999


Q ss_pred             cCCCCC--CceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           64 SNTITG--DDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        64 ~~~~~~--d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      ++.+++  |++||++.|+|.++.... ...||.|...+
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~  135 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD  135 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence            999987  999999999999986544 67899998654

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.72  E-value=4.3e-17  Score=141.56  Aligned_cols=112  Identities=22%  Similarity=0.300  Sum_probs=95.9

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ...+.|+|+|++|++|..++..+++||||+                 +++||+|||+|.|.+...   ...|+|+|||++
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            367899999999999999999999999998                 678999999999998642   358999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC---ccceEEEEEEEEEecCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG---KHAGEVNIILRCANVWN  117 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g---~~~G~L~l~l~~~~~~~  117 (243)
                      .+++|++||++.|+|.++........|+.|....+   ...|+|.++++|.+...
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~  150 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG  150 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC
Confidence            99999999999999999877666678999986532   46799999999876543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.72  E-value=6.1e-18  Score=135.57  Aligned_cols=90  Identities=11%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ..+.|+|+|++|+||..++..+++||||+                    +++||+|||+|.|.|...   ...|+|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            56799999999999999999999999998                    788999999999998643   4579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhh-cCCCCCceeec
Q 038128           64 SNTITGDDFIGSGKVQLTKAIT-QGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~-~~~~~~~~~L~   96 (243)
                      ++.+++|++||++.|+|.++.. ......|+.|.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             CCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            9999999999999999999853 34456788886

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=2e-17  Score=127.38  Aligned_cols=89  Identities=21%  Similarity=0.468  Sum_probs=72.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeC----CCceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIH----GVNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~----~~~~L~v~V~d   63 (243)
                      ..++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+..    ....|+|+|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            46789999999999999999999999998                   67899999999999632    24589999999


Q ss_pred             cCCCCC--CceeeEEEEEchHhhhcCCCCCceeec
Q 038128           64 SNTITG--DDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~~~--d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      ++.+++  |++||++.|+|.++.... ...||.|.
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            999987  999999999999987654 66788873

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.71  E-value=2.3e-17  Score=129.19  Aligned_cols=93  Identities=16%  Similarity=0.363  Sum_probs=80.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------------------CCCCCcccceEEEE-eeC---CC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------------------GGKNPTFQEKFMFP-LIH---GV   54 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------------~~~nP~WnE~f~f~-i~~---~~   54 (243)
                      ..+.|+|+|++|++|..++..+++||||+                            +++||+|||+|.|. +..   ..
T Consensus        16 ~~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             cCCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccC
Confidence            46789999999999999999999999998                            13589999999997 542   34


Q ss_pred             ceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           55 NEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        55 ~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      ..|+|+|||++.+++|++||++.|+|.++........|+.|...+
T Consensus        96 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             CEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            589999999999999999999999999987766677899998643

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.71  E-value=6.1e-17  Score=131.39  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=81.6

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS   75 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~   75 (243)
                      +.|+|+|++|++|.   ..+++||||+             ++.||+|||+|.|.+.+....|+|+|||+| +++|+|||+
T Consensus        14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~iG~   89 (167)
T 2cjs_A           14 SLLCVGVKKAKFDG---AQEKFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMVGT   89 (167)
T ss_dssp             CEEEEEEEEEECSS---CGGGCEEEEEEEETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEEEEE
T ss_pred             EEEEEEEEEEECCC---CCCCCCeEEEEEecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCceEEE
Confidence            48999999999884   3578999998             588999999999999877778999999999 889999999


Q ss_pred             EEEEchHhhhcCCCC------CceeecCCCCcc-------ceEEEEEEEEEecCC
Q 038128           76 GKVQLTKAITQGYDD------NPWPLWTRSGKH-------AGEVNIILRCANVWN  117 (243)
Q Consensus        76 ~~i~L~~l~~~~~~~------~~~~L~~~~g~~-------~G~L~l~l~~~~~~~  117 (243)
                      +.|+|.++.......      .|+.+...+++.       .++|.++++|....+
T Consensus        90 ~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~~  144 (167)
T 2cjs_A           90 VWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPLD  144 (167)
T ss_dssp             EEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCCC
T ss_pred             EEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCCC
Confidence            999999986544211      233444344443       345778888865443

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=2.9e-17  Score=129.56  Aligned_cols=91  Identities=21%  Similarity=0.234  Sum_probs=75.8

Q ss_pred             cCceEEEEEEEeeCCCCC-C------CCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEE
Q 038128            7 QGQPLEVTVIACKGLKDT-E------WLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNL   59 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~-~------~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v   59 (243)
                      ..++|+|+|++|++|..+ +      ..+++||||+                 ++.||+|||+|.|.+...   ...|+|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            567999999999999974 3      3458999998                 678999999999998642   358999


Q ss_pred             EEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +|||++.+++|++||++.|+|.++........|+.|..
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~  141 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIP  141 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBC
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeec
Confidence            99999999999999999999999866555555667764

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=8.8e-17  Score=125.85  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ..+.|+|+|++|++   ++..+++||||+                  +++||+|||+|.|.+...   ...|+|+|||+|
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            56799999999993   677889999998                  778999999999998643   357999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      .+++|++||++.|+|.++........|+.|...
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            999999999999999998655566789999854

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.69  E-value=5.2e-17  Score=127.26  Aligned_cols=90  Identities=23%  Similarity=0.392  Sum_probs=76.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEE-eeCC---CceEEEEEEe
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFP-LIHG---VNEMNLVVWN   63 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~-i~~~---~~~L~v~V~d   63 (243)
                      ..++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|. +...   ...|+|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            56789999999999999999999999998                   67899999999999 5432   2579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      ++.+++|++||++.|+|.++........|+.|.
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~  139 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQRKNFNICLE  139 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence            999999999999999999987655444555554

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.69  E-value=8.7e-17  Score=125.50  Aligned_cols=91  Identities=18%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCC-CCCCcEEe-----------------CCCCCcccceEEEE-eeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWL-SKQDPYVY-----------------GGKNPTFQEKFMFP-LIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~-g~~dPYv~-----------------~~~nP~WnE~f~f~-i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|++|..++.+ +++||||+                 +++||+|||+|.|. +...   ...|+|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            567899999999999999986 88999998                 77899999999996 6532   35799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCC-CCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYD-DNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~-~~~~~L~~   97 (243)
                      +.+++|++||++.|+|.++...... ..|+.|..
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence            9999999999999999998665433 34567764

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.67  E-value=3.2e-16  Score=125.25  Aligned_cols=76  Identities=26%  Similarity=0.367  Sum_probs=68.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||..++..+++||||+                   ++.||+|||+|.|.|...   ...|+|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            56799999999999999999999999998                   678999999999999643   34799999999


Q ss_pred             CCCCCCceeeEEEEEchH
Q 038128           65 NTITGDDFIGSGKVQLTK   82 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~   82 (243)
                      +.+++|++||++.|+|..
T Consensus       103 d~~~~~~~iG~~~i~l~~  120 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNS  120 (159)
T ss_dssp             CSSSCCEEEEEEEEETTC
T ss_pred             CCCCCCceEEEEEECCCC
Confidence            999999999999999984

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.67  E-value=4.2e-17  Score=129.49  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=70.5

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC---ceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV---NEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~---~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||..++..+++||||+                   +++||+|||+|.|.|....   ..|+|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            56799999999999999998999999998                   6789999999999996542   5799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      +.+++|++||++.|+|.+  .......|+.|...
T Consensus       108 d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~  139 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATA--EGSGGGHWKEICDF  139 (153)
T ss_dssp             CTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHS
T ss_pred             CCCCCCcEEEEEEECCCC--CchHHHHHHHHHhC
Confidence            999999999999999987  22223467777643

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.67  E-value=3.6e-16  Score=121.39  Aligned_cols=93  Identities=20%  Similarity=0.302  Sum_probs=77.8

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCC---ceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGV---NEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~---~~L~v~V~d   63 (243)
                      ...++|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+....   ..|+|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            357899999999999999999999999998                   6789999999999986543   579999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG  100 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g  100 (243)
                      ++.+++|++||++.|+|+++..  ....|++|....+
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~--~~~~W~~l~~~~~  127 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPG--EVKHWKDMIARPR  127 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHH--HHHHHHHHHHSTT
T ss_pred             CCCCCCCcEEEEEEEccccCCh--HHHHHHHHHhCCC
Confidence            9999999999999999986432  2346777765433

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.66  E-value=7.8e-16  Score=134.95  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=91.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ...+.|+|+|++|++|..++..+++||||+                 +++||+|||+|.|.+...   ...|+|+|||+|
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            457899999999999999999999999998                 678999999999998533   347999999999


Q ss_pred             CCCCCceeeEEEEE-chHhhhc-CCCCCceeecCCCC--ccceEEEEEEEEEecCC
Q 038128           66 TITGDDFIGSGKVQ-LTKAITQ-GYDDNPWPLWTRSG--KHAGEVNIILRCANVWN  117 (243)
Q Consensus        66 ~~~~d~~IG~~~i~-L~~l~~~-~~~~~~~~L~~~~g--~~~G~L~l~l~~~~~~~  117 (243)
                      .+++|++||++.|+ |.++... .....|+.|.....  ...|+|.++++|.+...
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~  152 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG  152 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTT
T ss_pred             CCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccc
Confidence            99999999999995 5555442 33457888875432  46799999998876543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.66  E-value=1.4e-16  Score=128.38  Aligned_cols=90  Identities=22%  Similarity=0.407  Sum_probs=76.4

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|++|..++..+++||||+                   +++||+|||+|.|.+...   ...|+|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            46799999999999999999999999998                   678999999999999643   34899999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      +.+++|++||++.|+|.++..  ....|+.|...
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~~  146 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGE--RLKHWYECLKN  146 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH--HHHHHHHHHHC
T ss_pred             CCCCCCcEEEeEEEecccCCc--hhHHHHHHHhC
Confidence            999999999999999987532  23457776643

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.65  E-value=9e-16  Score=143.53  Aligned_cols=105  Identities=22%  Similarity=0.253  Sum_probs=89.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCCCCCCc
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNTITGDD   71 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~~~~d~   71 (243)
                      ..++|+|+|++|++|..++..+++||||+              ++.||+|||+|.|.+.... ..|+|+|||+|.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            45689999999999999999999999998              7899999999999997554 57999999999999999


Q ss_pred             eeeEEEEEchHhhhcCC----CCCceeecCCCCccceEEEEEEEEEe
Q 038128           72 FIGSGKVQLTKAITQGY----DDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~----~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      |||++.|+|.++.....    ...|+.|..   +..|+|+|++++.-
T Consensus       465 ~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~---~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQESKGPMTRRLLLHE---VPTGEVWVRFDLQL  508 (510)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCSCCEEEECBS---SSSCEEEEEEEEEE
T ss_pred             ceEEEEEEHHHhccccCCCCceeeeecCCC---CCCceEEEEEEEEE
Confidence            99999999999876432    456777763   46799998888753

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.63  E-value=2.3e-15  Score=118.11  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=88.6

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEee---CCCceEEEEEEecCCCCCCc
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLI---HGVNEMNLVVWNSNTITGDD   71 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~---~~~~~L~v~V~d~~~~~~d~   71 (243)
                      .|+|+|.+|++|+     ++.|++++               ++.||+|||.|+|.+.   +....|+|.|+|++++++|+
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            6899999999998     47899999               4899999999999995   33557999999999999999


Q ss_pred             eeeEEEEEchHhhhcCCCCCceeecCCCCc-cceEEEEEEEEEecCC
Q 038128           72 FIGSGKVQLTKAITQGYDDNPWPLWTRSGK-HAGEVNIILRCANVWN  117 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~-~~G~L~l~l~~~~~~~  117 (243)
                      +||++.|+|.++..++....+..|.+.+++ ..++|.|+|+|.+..+
T Consensus        97 lIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             EEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence            999999999999988766667778876664 4589999999998644

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.58  E-value=5.1e-15  Score=140.00  Aligned_cols=97  Identities=20%  Similarity=0.331  Sum_probs=81.5

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeC--CCceEEEEEEecCCCCCCce
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIH--GVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~--~~~~L~v~V~d~~~~~~d~~   72 (243)
                      ++|+|+|++|++|.. |.++++||||+              +++||+|||+|.|.+.+  ....|+|+|||+|.+++|||
T Consensus       394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~  472 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDL  472 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEE
T ss_pred             cEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCE
Confidence            579999999999998 99999999998              78999999999999743  45689999999999988999


Q ss_pred             eeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEecC
Q 038128           73 IGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVW  116 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~~~  116 (243)
                      ||++.++|..    +....|+.|.      .|+|++++++.-..
T Consensus       473 LG~~~~~L~~----g~~~~~~~l~------~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          473 LGSCDRSPHS----GFHEVTCELN------HGRVKFSYHAKCLP  506 (540)
T ss_dssp             EEEEEECCCS----EEEEEEEECS------SSEEEEEEEEEECT
T ss_pred             EEEEEEEeeC----CcEEEEEEcC------CeEEEEEEEEEECC
Confidence            9999999872    2334566543      58999998877643

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.53  E-value=6e-14  Score=134.92  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=88.9

Q ss_pred             ccCceEEEEEEEeeCCCCCCC--CCCCCcEEe-------------------C-CCCCcccceEEEEeeCC-CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEW--LSKQDPYVY-------------------G-GKNPTFQEKFMFPLIHG-VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~--~g~~dPYv~-------------------~-~~nP~WnE~f~f~i~~~-~~~L~v~V~   62 (243)
                      ...++|+|+|++|++|...+.  .++.||||+                   + +.||+|||+|+|.|... ...|+|+||
T Consensus       494 ~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~  573 (624)
T 1djx_A          494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE  573 (624)
T ss_dssp             CCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred             ccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence            466799999999999998874  678999998                   3 38999999999999754 358999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEE
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCA  113 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~  113 (243)
                      |+|.+++|+|||++.|+|.+|...   .+|+.|.+.+++  ..++|.|+|+|.
T Consensus       574 D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          574 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            999999999999999999987542   368999887775  358888888875

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.49  E-value=2.3e-15  Score=140.80  Aligned_cols=104  Identities=14%  Similarity=0.257  Sum_probs=21.0

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CC---CCCcccceEEEEeeCCCceEEEEEEec-C---
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GG---KNPTFQEKFMFPLIHGVNEMNLVVWNS-N---   65 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~---~nP~WnE~f~f~i~~~~~~L~v~V~d~-~---   65 (243)
                      .++|+|+|++|++|..++     ||||+               ++   .||+|||+|+|.+......|+|+|||+ +   
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~~   84 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKKR   84 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCccc
Confidence            457999999999998876     88888               55   899999999999765567899999994 4   


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCCCC------------------------ccceEEEEEEEEEecC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSG------------------------KHAGEVNIILRCANVW  116 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g------------------------~~~G~L~l~l~~~~~~  116 (243)
                      ++++|+|||++.|+|.++........||.|...+.                        +..|+|+|+++|.+..
T Consensus        85 ~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           85 KKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             ----------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             cCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence            36789999999999999887666778999964321                        2468999999998754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.49  E-value=9.8e-14  Score=120.30  Aligned_cols=76  Identities=26%  Similarity=0.367  Sum_probs=68.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..+.|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+...   ...|+|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            35689999999999999999999999998                   678999999999999644   33699999999


Q ss_pred             CCCCCCceeeEEEEEchH
Q 038128           65 NTITGDDFIGSGKVQLTK   82 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~   82 (243)
                      +.+++|++||++.|+|..
T Consensus       228 d~~~~~~~iG~~~i~l~~  245 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNS  245 (284)
T ss_dssp             CSSSCCCEEEEEEEETTC
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence            999999999999999975

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.46  E-value=7.7e-14  Score=136.03  Aligned_cols=90  Identities=20%  Similarity=0.371  Sum_probs=80.0

Q ss_pred             cCceEEEEEEEeeCCCC---CCCCCCCCcEEe-----------------CCCCCcccceEEEEeeC-CCceEEEEEEecC
Q 038128            7 QGQPLEVTVIACKGLKD---TEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIH-GVNEMNLVVWNSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~---~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~-~~~~L~v~V~d~~   65 (243)
                      ..++|+|+|++|++|..   ++..+++||||+                 +++||+|||+|+|.+.. ....|+|+|||+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            45799999999999998   788889999999                 67899999999999976 4558999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      .++ |++||++.|+|.+|........|+.|..
T Consensus        96 ~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~  126 (749)
T 1cjy_A           96 YVM-DETLGTATFTVSSMKVGEKKEVPFIFNQ  126 (749)
T ss_dssp             SSS-CEEEEEECCBSTTSCTTCCCCEEEEETT
T ss_pred             CCC-CceeEEEEEEHHHcCCCCceEEEEecCC
Confidence            998 9999999999999876666678999974

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.43  E-value=6.9e-14  Score=122.54  Aligned_cols=77  Identities=27%  Similarity=0.402  Sum_probs=69.0

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..+.|+|+|++|++|..++..+++||||+                   ++.||+|||+|.|.+...   ...|+|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            35789999999999999999999999998                   677999999999998654   34799999999


Q ss_pred             CCCCCCceeeEEEEEchHh
Q 038128           65 NTITGDDFIGSGKVQLTKA   83 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l   83 (243)
                      +.+++|++||++.|.|.++
T Consensus       230 d~~~~~~~iG~~~i~l~~~  248 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAA  248 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTT
T ss_pred             CCCCCCceEEEEEECCccC
Confidence            9999999999999999865

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.34  E-value=1.6e-12  Score=125.92  Aligned_cols=92  Identities=25%  Similarity=0.406  Sum_probs=80.8

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEecC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWNSN   65 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d~~   65 (243)
                      ..+.|+|+|++|++|..++..+++||||+                   +++||+|||+|.|.+...  ...|.|+|||+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d  249 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWD  249 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecc
Confidence            45789999999999999999999999997                   678999999999999643  457999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      .+++|++||++.|.|.++.... ...|+.|+...
T Consensus       250 ~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~  282 (674)
T 3pfq_A          250 LTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE  282 (674)
T ss_dssp             SSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred             cccccccccccccchhhhccCC-cccceeecccc
Confidence            9999999999999999987754 47899888643

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.11  E-value=3.7e-10  Score=111.91  Aligned_cols=97  Identities=20%  Similarity=0.315  Sum_probs=78.6

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------------CCCCCcccc-eEEEE-ee-CCCceEEEEEE
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------------GGKNPTFQE-KFMFP-LI-HGVNEMNLVVW   62 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------------~~~nP~WnE-~f~f~-i~-~~~~~L~v~V~   62 (243)
                      ...+|+|+|++|++|...    +.||||+                     ++.||+||| +|+|. |. .....|+|+||
T Consensus       723 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~  798 (885)
T 3ohm_B          723 VANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAF  798 (885)
T ss_dssp             CCEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             cceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEE
Confidence            345899999999999853    5899998                     358999999 69998 64 33458999999


Q ss_pred             ecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEEe
Q 038128           63 NSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCAN  114 (243)
Q Consensus        63 d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~~  114 (243)
                      |++    |+|||++.|+|+.|..   .-+++.|.+..++  ..++|.|.|++..
T Consensus       799 D~d----ddfiG~~~lpL~~L~~---GyR~vpL~~~~g~~l~~atLfv~i~~~~  845 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRS---GYHYVCLRNEANQPLCLPALLIYTEASD  845 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCC---EEEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             cCC----ccEEeeEEEEHHHcCC---CceEEEecCCCCCccCceEEEEEEEEEe
Confidence            987    8999999999997643   2356888887775  4789999999886

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.09  E-value=5.5e-10  Score=109.98  Aligned_cols=97  Identities=24%  Similarity=0.412  Sum_probs=78.0

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------------CCCCCcccce-EEEE-eeC-CCceEEEEE
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------------GGKNPTFQEK-FMFP-LIH-GVNEMNLVV   61 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------~~~nP~WnE~-f~f~-i~~-~~~~L~v~V   61 (243)
                      ...+|+|+|++|++|...    +.||||+                      ++.||+|||+ |+|. |.. ....|+|+|
T Consensus       648 ~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V  723 (816)
T 3qr0_A          648 VAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV  723 (816)
T ss_dssp             CCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred             cceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE
Confidence            356899999999999853    5899997                      4589999998 9998 643 345899999


Q ss_pred             EecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCcc--ceEEEEEEEEEe
Q 038128           62 WNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH--AGEVNIILRCAN  114 (243)
Q Consensus        62 ~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~--~G~L~l~l~~~~  114 (243)
                      ||++    |+|||++.|+|+.|.. +  -+++.|.+.+++.  .++|.|.|++..
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~-G--yR~vpL~~~~g~~~~~atLfv~i~~~~  771 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKP-G--YRHVPLRNESNRPLGLASVFAHIVAKD  771 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCC-E--EEEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred             EecC----CCeeeEEEEEHHHcCC-c--ceEEEEeCCCCCCCCceEEEEEEEEEe
Confidence            9985    7999999999997653 2  3568898877753  478888888876

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.04  E-value=1.1e-09  Score=107.82  Aligned_cols=97  Identities=21%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------C------CCCCcccc-eEEE-EeeCC-CceEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------G------GKNPTFQE-KFMF-PLIHG-VNEMNLV   60 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------~------~~nP~WnE-~f~f-~i~~~-~~~L~v~   60 (243)
                      ...++|+|+|++|++|..    .+.||||+                +      +.||+||| +|+| .|... ...|+|+
T Consensus       675 ~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~  750 (799)
T 2zkm_X          675 VVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA  750 (799)
T ss_dssp             TTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred             eeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEE
Confidence            345689999999999985    35899988                2      46999999 6999 77533 4589999


Q ss_pred             EEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEE
Q 038128           61 VWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCA  113 (243)
Q Consensus        61 V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~  113 (243)
                      |||++    |+|||++.|+|+.|..   ..+++.|.+..++  ..++|.|+|.+.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~---G~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNS---GYHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCC---EEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEeC----CCccceEeeehhhcCC---CcEEEeccCCCCCCCCceEEEEEEEEE
Confidence            99986    8999999999998743   2457888876664  457788888775

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.02  E-value=6.3e-09  Score=79.45  Aligned_cols=97  Identities=9%  Similarity=0.050  Sum_probs=74.4

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEecCCC
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTI   67 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~   67 (243)
                      .+.-|+|.+.+..--.........||||.                   +|..|+|||+|.-.|.+ .+.|.|.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC-
Confidence            35568888877653222222335899998                   67899999999998875 5779999997653 


Q ss_pred             CCCceeeEEEEEchHhhhc-----CCCCCceeecCCCCccceEEEEEEEEE
Q 038128           68 TGDDFIGSGKVQLTKAITQ-----GYDDNPWPLWTRSGKHAGEVNIILRCA  113 (243)
Q Consensus        68 ~~d~~IG~~~i~L~~l~~~-----~~~~~~~~L~~~~g~~~G~L~l~l~~~  113 (243)
                         +||.+|+|.+++|+..     +..+.|++|.     ..|+|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe-----P~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEecc-----cCcEEEEEEEEe
Confidence               8999999999999854     2335788887     689999999886

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.00  E-value=6.1e-09  Score=80.56  Aligned_cols=100  Identities=16%  Similarity=0.099  Sum_probs=76.8

Q ss_pred             ccCceEEEEEEEeeCCCCCC-CCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTE-WLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~-~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~   65 (243)
                      ..+.-|+|.+.+..-..... .....||||.                   +|..|+|||+|.-.|.+ .+.|.|.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence            45667899998875433322 2235899998                   56799999999988765 577999999765


Q ss_pred             CCCCCceeeEEEEEchHhhhc-----CCCCCceeecCCCCccceEEEEEEEEEec
Q 038128           66 TITGDDFIGSGKVQLTKAITQ-----GYDDNPWPLWTRSGKHAGEVNIILRCANV  115 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~-----~~~~~~~~L~~~~g~~~G~L~l~l~~~~~  115 (243)
                      .    +||.+|+|.+.+|+..     +..+.|++|.     ..|+|+|.++|.-.
T Consensus        86 ~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe-----P~Gkl~v~i~~~~e  131 (138)
T 2enj_A           86 V----DLISETTVELYSLAERCRKNNGKTEIWLELK-----PQGRMLMNARYFLE  131 (138)
T ss_dssp             C----SCCEEEEEESHHHHHHHHHTTTCEEEEEECB-----SSCEEEEEEEECCC
T ss_pred             C----CeeeEEEEEHHHHHhhhccCCCceEEEEecc-----cCcEEEEEEEEEEe
Confidence            3    8999999999999844     3345788887     68999999999643

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.58  E-value=0.017  Score=45.51  Aligned_cols=112  Identities=11%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             CCCccCceEEEEEEEeeCCCCCC--CCCCCC--cEEe--------------CCCCCcccceEEEEeeCC--------Cce
Q 038128            3 AANVQGQPLEVTVIACKGLKDTE--WLSKQD--PYVY--------------GGKNPTFQEKFMFPLIHG--------VNE   56 (243)
Q Consensus         3 ~~~~~~~~L~V~V~~A~~L~~~~--~~g~~d--PYv~--------------~~~nP~WnE~f~f~i~~~--------~~~   56 (243)
                      ...-..+.|+|.|.++. |....  ..+..+  .||.              .+.+|.+|.+-.|.|..+        ...
T Consensus        12 ~l~~gEnlfEihi~~~~-~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V~~d~~fl~yL~~~~   90 (156)
T 2yrb_A           12 HLERGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNT   90 (156)
T ss_dssp             SCCSSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCC
T ss_pred             hccCCCcEEEEEEeEEE-EcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEEEeCHHHHHHHhcCC
Confidence            34456678999999885 32110  011123  3555              789999999988888533        135


Q ss_pred             EEEEEEecCCCCCCceeeEEEEEchHhhhcCCC-CCceeecCCCC--ccceEEEEEEEEEecC
Q 038128           57 MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD-DNPWPLWTRSG--KHAGEVNIILRCANVW  116 (243)
Q Consensus        57 L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~-~~~~~L~~~~g--~~~G~L~l~l~~~~~~  116 (243)
                      |.|+|+..... .-++||.++|.|.+|+..... .....|...++  ..-|.|++.|++.-.-
T Consensus        91 l~lELhqa~g~-~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi  152 (156)
T 2yrb_A           91 ITLEVHQAYST-EYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVSG  152 (156)
T ss_dssp             EEEEEEEECSS-CEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEECC
T ss_pred             EEEEEEEeeCC-CceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEeccc
Confidence            88888876532 456999999999999977542 33457777666  5789999999998643

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.47  E-value=0.74  Score=38.16  Aligned_cols=47  Identities=11%  Similarity=0.177  Sum_probs=32.6

Q ss_pred             CCCCCcccceEEEEeeCC---CceEEEEEEecCCC----CCCceeeEEEEEchH
Q 038128           36 GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSNTI----TGDDFIGSGKVQLTK   82 (243)
Q Consensus        36 ~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~~~----~~d~~IG~~~i~L~~   82 (243)
                      .+.+|.|+|+|.+.|...   ...|.|++++....    +.+..+|-+-++|-+
T Consensus        86 Hnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           86 QVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             TCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             cCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            678999999999999644   23688998765421    123467777777653

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.12  E-value=0.58  Score=46.82  Aligned_cols=72  Identities=13%  Similarity=0.233  Sum_probs=49.3

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee----CCCceEEEEEEe
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI----HGVNEMNLVVWN   63 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~----~~~~~L~v~V~d   63 (243)
                      ...|.|+|.++.++...   ...+.||.                    ...++.|||.++|.|.    .....|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            35899999999988643   23456666                    2567999999999874    335679999998


Q ss_pred             cCCC--C----------CCceeeEEEEEchH
Q 038128           64 SNTI--T----------GDDFIGSGKVQLTK   82 (243)
Q Consensus        64 ~~~~--~----------~d~~IG~~~i~L~~   82 (243)
                      ....  +          .+..||.+.+.|-+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EC----------------CEEEEEEEEESBC
T ss_pred             ecCCccCccccccccccccceEEEEeeeEEC
Confidence            5321  1          23478888887765

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=91.92  E-value=0.56  Score=47.49  Aligned_cols=75  Identities=12%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEee----CCCceEEEEEEec
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI----HGVNEMNLVVWNS   64 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~----~~~~~L~v~V~d~   64 (243)
                      .+.+.|+|..+.++.. +.....+.||.                   ...++.|||.++|+|.    .....|.|+||+.
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~  432 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLNYDIYIPDLPRAARLCLSICSV  432 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCCCTTSCEEEEEEEEEEEGGGCCTTCEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceeccccCCCCCCCCeeEEecCccccCChhcEEEEEEEEe
Confidence            3578999999988753 22223566666                   3346789999999984    3356899999986


Q ss_pred             CCC----CCCceeeEEEEEchHh
Q 038128           65 NTI----TGDDFIGSGKVQLTKA   83 (243)
Q Consensus        65 ~~~----~~d~~IG~~~i~L~~l   83 (243)
                      ...    ..+..||.+.+.|-+.
T Consensus       433 ~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          433 KGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCC-------CCEEEEEESBCT
T ss_pred             cCccCcccccceeEEeeeeeEcc
Confidence            542    1245799999988764

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=86.95  E-value=0.84  Score=46.33  Aligned_cols=54  Identities=17%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe--------------------CCCCCcccceEEEEee----CCCceEEEEEEec
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLI----HGVNEMNLVVWNS   64 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~----~~~~~L~v~V~d~   64 (243)
                      ..|.|+|..+.++...+   ..+.||.                    .+.++.|||.++|.|.    .....|.|+||+.
T Consensus       353 ~~f~i~i~~~~~~~~~~---~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~  429 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTEE---TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV  429 (1092)
T ss_dssp             SEEEEEECCCCCCCCCS---SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred             CCEEEEEEEeccCCCCC---CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence            57999999998886432   2344544                    2567999999999874    2355799999986


Q ss_pred             C
Q 038128           65 N   65 (243)
Q Consensus        65 ~   65 (243)
                      .
T Consensus       430 ~  430 (1092)
T 2y3a_A          430 L  430 (1092)
T ss_dssp             -
T ss_pred             c
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	7e-20
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	6e-13
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-12
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-11
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-09
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	5e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-08
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-06
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-06
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	4e-06
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-05
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-05
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	5e-05
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	0.002
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	0.004

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 80.6 bits (198), Expect = 7e-20
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV---------------YGGKNPTFQEKFMFPLIHGVN 55
           LEV +++ KGL+D ++L+  DPYV                 G  P + E F+F +  G  
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 56  EMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILR 111
           E+   +++ +  T DD +G   + L     +G          +  ++ GE+ + L 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 6e-13
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 16/121 (13%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV--------------YGGKNPTFQEKFMFPLIHGVNE 56
           L+V V+    L   ++  K DP+               Y   NP + + F FP+    + 
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 67

Query: 57  MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCANVW 116
           + + V++ +     DF+G   + L        +              G + + +    ++
Sbjct: 68  LEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDL--IY 125

Query: 117 N 117
           N
Sbjct: 126 N 126

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 6e-12
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 25/128 (19%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYVYG--------------GKNPTFQEKFMFPL 50
            ++ Q L++TVI+ K  ++ +      PYV                  +P +++      
Sbjct: 3   TMKSQ-LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI- 60

Query: 51  IHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLW--------TRSGKH 102
           +  V++++  VW+  T+  D  +G+  + +     +  +     +             + 
Sbjct: 61  VTPVSKLHFRVWSHQTLKSDVLLGTAALDI-YETLKSNNMKLEEVVVTLQLGGDKEPTET 119

Query: 103 AGEVNIIL 110
            G+++I L
Sbjct: 120 IGDLSICL 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 25/122 (20%)

Query: 4   ANVQGQPLEVTVIACKGLKDTEWLSKQDPYV-------------------YGGKNPTFQE 44
           A++  + L V V   K L   +     DPYV                       NP + E
Sbjct: 10  AHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNE 69

Query: 45  KFMFPLIHGVNEMNL--VVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPW-PLWTRS-G 100
            F F L     +  L   +W+ +  + +DF+GS    +++    G D   W  L ++  G
Sbjct: 70  TFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDG--WFKLLSQEEG 127

Query: 101 KH 102
           ++
Sbjct: 128 EY 129

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-----------------YGGKNPTFQEKFM 47
           + Q   L V +I    L   +     DPYV                     NP F E+F 
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89

Query: 48  FPLIHGV---NEMNLVVWNSNTITGDDFIGSGKVQLTK 82
           F + +       + + V++ +  +  D IG  KV +  
Sbjct: 90  FKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 5e-09
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 25/110 (22%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSKQDPYV-------------------YGGKNPTFQEK 45
           +  G  L VT++  K L   E    ++PYV                        P + + 
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69

Query: 46  FMFPLIHGVNEMN----LVVWNSNTITGD--DFIGSGKVQLTKAITQGYD 89
           F++  +H          + +W+   +  +  +F+G   ++L  A+     
Sbjct: 70  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEP 119

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 25/122 (20%)

Query: 11  LEVTVIACKGLKDTEW---LSKQDPYV-----------------YGGKNPTFQEKFMFPL 50
             V V+    +    +   L   DPYV                     NP + E F F L
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 51  IHGVNEMN-LVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNII 109
                 +  + + ++N +  D+ +G+    ++        + P+     +      + + 
Sbjct: 65  DPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF---NQVTEMVLEMS 120

Query: 110 LR 111
           L 
Sbjct: 121 LE 122

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 23/122 (18%)

Query: 5   NVQGQPLEVTVIACKGLKDTEWLSK-QDPYVY-----------------GGKNPTFQEKF 46
           N + +   V +   +GL   +  S   DPY+                     +P F E F
Sbjct: 18  NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77

Query: 47  MFPLIHGVNEMN----LVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKH 102
            F  I             + + +  + DD IG   + L+  I              SG  
Sbjct: 78  TFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG-IELSEGKMLMNREIISGPS 136

Query: 103 AG 104
           +G
Sbjct: 137 SG 138

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 26/124 (20%)

Query: 11  LEVTVIACKGL--KDTEWLSKQDPYVYGGK--------------------NPTFQEKFMF 48
           L V +I+ + L   +    S  DP V                        NP +  +F F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 49  PLIH-GVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVN 107
            +    +  +  +V + ++ + +DFIG   +     + QGY      L +++G       
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS-LKQGYRH--VHLLSKNGDQHPSAT 122

Query: 108 IILR 111
           + ++
Sbjct: 123 LFVK 126

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLI 51
           L V V+  + L  ++     DPYV                       N  F E F+F + 
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76

Query: 52  H---GVNEMNLVVWNSNTITGDDFIGSGKVQL 80
                   +  +V +S   + ++ IG   +  
Sbjct: 77  CESLEEISVEFLVLDSERGSRNEVIGRLVLGA 108

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 32/104 (30%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV----------------------------YGGKNPTF 42
           L + ++  + L   +     DP+V                                NP +
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 43  QEKFMFPLIHGVNEMN----LVVWNSNTITGDDFIGSGKVQLTK 82
            +  ++  I     M     + VW+ +  + +DF+G   + L+ 
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 22/101 (21%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPY-------------------VYGGKNPTFQEKFMFPLI 51
           L VT+I    LK  +     DPY                        NPT+ E  +F + 
Sbjct: 22  LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81

Query: 52  HGVNE---MNLVVWNSNTITGDDFIGSGKVQLTKAITQGYD 89
               E   +++ V + + I  ++ IG  +V    A   G +
Sbjct: 82  PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGRE 122

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 5e-05
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 22/86 (25%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYV-------------------YGGKNPTFQEKFMFPLI 51
           L V +I C  L   +     DP+V                       NP F E+F + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 52  H---GVNEMNLVVWNSNTITGDDFIG 74
           H       +++ VW+ +    +D+IG
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIG 102

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 35.2 bits (80), Expect = 0.002
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 30/126 (23%)

Query: 11  LEVTVIACKGLKDTEWLSKQ-----------DPY---------------VYGGKNPTFQE 44
           L++ +     LK T W  +            DPY                    +P + +
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 45  KFMFPLIHGVNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAG 104
           +F+  + +G  ++ L V++   I  DDF+ +  +Q  + +  G     +  W    +  G
Sbjct: 68  EFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNG--SRHFEDW-IDLEPEG 123

Query: 105 EVNIIL 110
           +V +I+
Sbjct: 124 KVYVII 129

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 22/92 (23%)

Query: 11  LEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL- 50
           L V ++  K LK  +     DPYV                       NP + E F F + 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 51  IHGVNEMNLVV--WNSNTITGDDFIGSGKVQL 80
              + ++ +VV   + + I  +D IG   V  
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.88
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.79
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.77
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.75
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.72
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.71
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.62
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.6
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.59
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.59
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.58
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.57
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.52
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.4
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	95.13
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	93.98

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=6e-23  Score=158.93  Aligned_cols=109  Identities=26%  Similarity=0.502  Sum_probs=96.1

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCc
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDD   71 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~   71 (243)
                      ..++|+|+|++|++|+.++..+++||||+               ++.||+|||+|+|.+.+....|+|+|||++.+++|+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~   87 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDD   87 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTC
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCCC
Confidence            44799999999999999999999999999               578999999999999887778999999999999999


Q ss_pred             eeeEEEEEchHhhhcCCC-CCceeecCCCCccceEEEEEEEEEecC
Q 038128           72 FIGSGKVQLTKAITQGYD-DNPWPLWTRSGKHAGEVNIILRCANVW  116 (243)
Q Consensus        72 ~IG~~~i~L~~l~~~~~~-~~~~~L~~~~g~~~G~L~l~l~~~~~~  116 (243)
                      +||++.|+|.+++..... ..|+.|. ++++..|+|+|+|+|.+..
T Consensus        88 ~iG~~~i~L~~l~~~~~~~~~~~~l~-~~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          88 AVGEATIPLEPVFVEGSIPPTAYNVV-KDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             CSEEEEEESHHHHHHSEEEEEEEEEE-ETTEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEEhHHhcccCCcCcEEEEec-CCCccCEEEEEEEEEEeCC
Confidence            999999999998765443 5677776 4567889999999998853

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.5e-22  Score=150.25  Aligned_cols=105  Identities=19%  Similarity=0.339  Sum_probs=90.9

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCce
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDF   72 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~   72 (243)
                      +-|+|+|+|++|++|..++..+++||||+              ++.||+|||+|+|.+.+....|+|+|||++.+++|++
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~   83 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDF   83 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcce
Confidence            34789999999999999999999999999              7889999999999998777889999999999988999


Q ss_pred             eeEEEEEchHhhhcCCCCCceeecCCC--CccceEEEEEEEEE
Q 038128           73 IGSGKVQLTKAITQGYDDNPWPLWTRS--GKHAGEVNIILRCA  113 (243)
Q Consensus        73 IG~~~i~L~~l~~~~~~~~~~~L~~~~--g~~~G~L~l~l~~~  113 (243)
                      ||++.|+|.++...  ...|+.|...+  ++..|+|+|+|+|.
T Consensus        84 lG~~~i~l~~l~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          84 LGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             CCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EEEEEEEHHHCCCC--CceEEEccccCCCCceeEEEEEEEEEE
Confidence            99999999987543  34677766543  45679999999885

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.82  E-value=5e-20  Score=142.72  Aligned_cols=106  Identities=21%  Similarity=0.327  Sum_probs=90.3

Q ss_pred             CccCceEEEEEEEeeCCCCCC-----------CCCCCCcEEe---------------CCCCCcccceEEEEeeCCCceEE
Q 038128            5 NVQGQPLEVTVIACKGLKDTE-----------WLSKQDPYVY---------------GGKNPTFQEKFMFPLIHGVNEMN   58 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~-----------~~g~~dPYv~---------------~~~nP~WnE~f~f~i~~~~~~L~   58 (243)
                      .+.+++|+|+|++|++|+..+           ..++.||||+               ++.||+|||+|+|.+.+ .+.|+
T Consensus         2 ~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~   80 (136)
T d1gmia_           2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIE   80 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEE
T ss_pred             ccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceE
Confidence            356789999999999998643           3567899999               78899999999999964 46899


Q ss_pred             EEEEecCCCCCCceeeEEEEEchHhhhcCC--CCCceeecCCCCccceEEEEEEEEEecC
Q 038128           59 LVVWNSNTITGDDFIGSGKVQLTKAITQGY--DDNPWPLWTRSGKHAGEVNIILRCANVW  116 (243)
Q Consensus        59 v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~--~~~~~~L~~~~g~~~G~L~l~l~~~~~~  116 (243)
                      |+|||++.+++|++||+++|+|++++....  ...|+.|.     ..|+|+|+|+|..+.
T Consensus        81 i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~-----p~G~v~l~v~~~~~~  135 (136)
T d1gmia_          81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-----PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-----SSCEEEEEEEEEEEE
T ss_pred             EEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC-----CCcEEEEEEEEEeCC
Confidence            999999999999999999999999976654  34789886     479999999998753

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1e-19  Score=138.48  Aligned_cols=103  Identities=19%  Similarity=0.338  Sum_probs=86.5

Q ss_pred             CceEEEEEEEeeCCCCC---CCCCCCCcEEe-----------------CCCCCcccceEEEEeeCCC-ceEEEEEEecCC
Q 038128            8 GQPLEVTVIACKGLKDT---EWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHGV-NEMNLVVWNSNT   66 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~---~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~~-~~L~v~V~d~~~   66 (243)
                      +++|+|+|++|+||+..   ++.+++||||+                 ++.||+|||+|.|.+.+.. ..|+|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            57899999999999874   44678999998                 7889999999999997654 479999999987


Q ss_pred             CCCCceeeEEEEEchHhhhcCCCCCceeecCCCCccceEEEEEEEEEe
Q 038128           67 ITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        67 ~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      + +|++||++.|+|++|........||.|..   ...|+|+|++++.+
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~---~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ---VTEMVLEMSLEVAS  125 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT---TEEEEEEEEEECCC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccC---CCeEEEEEEEEEEe
Confidence            6 58999999999999876666678999963   35688888887754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.7e-18  Score=132.33  Aligned_cols=105  Identities=18%  Similarity=0.367  Sum_probs=83.5

Q ss_pred             CceEEEEEEEeeCCCCCCCCCCCCcEEe--------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCcee
Q 038128            8 GQPLEVTVIACKGLKDTEWLSKQDPYVY--------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFI   73 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~~~~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~I   73 (243)
                      .++|+|+|++|++|..++..+++||||+              ++.||+|||+|+|.+.. ...|+|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            3789999999999999888899999999              78999999999999965 45799999999999999999


Q ss_pred             eEEEEEchHhhhcCC---CCC--ceeecCCCC--ccceEEEEEEEEE
Q 038128           74 GSGKVQLTKAITQGY---DDN--PWPLWTRSG--KHAGEVNIILRCA  113 (243)
Q Consensus        74 G~~~i~L~~l~~~~~---~~~--~~~L~~~~g--~~~G~L~l~l~~~  113 (243)
                      |++.|+|.+++....   ...  ++.|...+.  +..|+|.|.|...
T Consensus        84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            999999999876432   122  334443322  4678888887654

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.9e-18  Score=130.36  Aligned_cols=103  Identities=19%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             CceEEEEEEEeeCCCC--CCCCCCCCcEEe--------------------CCCCCcccceEEEEeeCC-CceEEEEEEec
Q 038128            8 GQPLEVTVIACKGLKD--TEWLSKQDPYVY--------------------GGKNPTFQEKFMFPLIHG-VNEMNLVVWNS   64 (243)
Q Consensus         8 ~~~L~V~V~~A~~L~~--~~~~g~~dPYv~--------------------~~~nP~WnE~f~f~i~~~-~~~L~v~V~d~   64 (243)
                      ..+|+|+|++|++|..  .+..+++||||+                    ++.||+|||+|+|.+... ...|+|+|||+
T Consensus         3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            3579999999999964  456778999998                    346999999999998644 45799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEE
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCA  113 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~  113 (243)
                      |.+++|++||++.|+|+++..   ...|+.|.+.+++  ..++|.|+|++.
T Consensus        83 d~~~~d~~iG~~~i~l~~l~~---g~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          83 DSSSKNDFIGQSTIPWNSLKQ---GYRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             CTTTCCEEEEEEEEEGGGBCC---EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCcEEEEEEEEEeccCC---CCEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            999999999999999998743   2468899877775  356777777764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.4e-18  Score=132.04  Aligned_cols=92  Identities=24%  Similarity=0.368  Sum_probs=80.4

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC--CceEEEEEEe
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG--VNEMNLVVWN   63 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~--~~~L~v~V~d   63 (243)
                      ..+.++|+|+|++|+||..++..+.+||||+                   ++.||+|||+|.|.+.+.  ...|+|+|||
T Consensus        11 ~~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d   90 (132)
T d1a25a_          11 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD   90 (132)
T ss_dssp             EESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred             EecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEe
Confidence            3567899999999999999999999999998                   678999999999998653  3479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      ++.+++|+|||++.|+|.++... ....||.|..
T Consensus        91 ~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~  123 (132)
T d1a25a_          91 WDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS  123 (132)
T ss_dssp             CCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred             cCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCC
Confidence            99999999999999999998544 3467999975

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=3.3e-18  Score=132.51  Aligned_cols=94  Identities=17%  Similarity=0.362  Sum_probs=81.3

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe----------------------------CCCCCcccceEEEEeeC----C
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY----------------------------GGKNPTFQEKFMFPLIH----G   53 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------------~~~nP~WnE~f~f~i~~----~   53 (243)
                      ...++|+|+|++|+||..++..+.+||||+                            ++.||+|||+|.|.+..    .
T Consensus        15 y~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   94 (142)
T d1rh8a_          15 YDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM   94 (142)
T ss_dssp             EETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred             EeCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence            356799999999999999999999999998                            23499999999998532    2


Q ss_pred             CceEEEEEEecCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           54 VNEMNLVVWNSNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        54 ~~~L~v~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      ...|+|+|||++.+++|++||++.|+|.++........||.|..++
T Consensus        95 ~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          95 KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             TCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             CCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            4479999999999999999999999999988777778999998654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=7.4e-18  Score=129.23  Aligned_cols=100  Identities=21%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             ceEEEEEEEeeCCCCCCCCCCCCcEEe-------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCCceeeE
Q 038128            9 QPLEVTVIACKGLKDTEWLSKQDPYVY-------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGDDFIGS   75 (243)
Q Consensus         9 ~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d~~IG~   75 (243)
                      +.|+|+|++|++|..++   ++||||+             ++.||+|||+|.|.+.+....|.|+|||++.+ +|++||+
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG~   77 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGT   77 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecCCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceEE
Confidence            46999999999999876   5799999             67799999999999988878899999999887 5999999


Q ss_pred             EEEEchHhhhcCC--CCCceeecCCCCc-----------cceEEEEEEEE
Q 038128           76 GKVQLTKAITQGY--DDNPWPLWTRSGK-----------HAGEVNIILRC  112 (243)
Q Consensus        76 ~~i~L~~l~~~~~--~~~~~~L~~~~g~-----------~~G~L~l~l~~  112 (243)
                      +.|+|++++....  ...|+.|..+...           ...+|.++++|
T Consensus        78 ~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          78 VWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             EEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             EEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            9999999875533  3569999754322           24567777766

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=7.8e-18  Score=130.94  Aligned_cols=92  Identities=24%  Similarity=0.317  Sum_probs=80.6

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEecC
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNSN   65 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~~   65 (243)
                      ...++|+|+|++|+||+.++..+.+||||+                 ++.||+|||+|.|.|...   ...|+|+|||++
T Consensus        31 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            456799999999999999999999999998                 778999999999998532   457999999999


Q ss_pred             CCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           66 TITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        66 ~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      .++++++||++.|+|.++........|++|.+
T Consensus       111 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            99999999999999999866665678999874

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.9e-17  Score=125.75  Aligned_cols=93  Identities=18%  Similarity=0.251  Sum_probs=77.8

Q ss_pred             CccCceEEEEEEEeeCCCCCCCCCCCCcEEe-----------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            5 NVQGQPLEVTVIACKGLKDTEWLSKQDPYVY-----------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         5 ~~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-----------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ....++|+|+|++|+||..++..+++||||+                 ++.||+|||+|.|.+...   ...|+|+|||+
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~   93 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   93 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEc
Confidence            4567899999999999999999999999998                 678999999999998543   34699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcC--CCCCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQG--YDDNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~--~~~~~~~L~~   97 (243)
                      +.+++|++||++.|++...+.+.  ....|++|+.
T Consensus        94 ~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          94 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            99999999999999866544332  3346999984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.6e-16  Score=122.84  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      .+.++|+|+|++|++|..   .+.+||||+                  ++.||+|||+|.|.|...   ...|+|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            467799999999999953   467899999                  778999999999999643   34799999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTR   98 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~   98 (243)
                      +.+++|++||++.|+|.++........|++|..+
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            9999999999999999998666667789999854

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.9e-16  Score=116.63  Aligned_cols=90  Identities=20%  Similarity=0.417  Sum_probs=71.0

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEe-eCC---CceEEEEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPL-IHG---VNEMNLVVW   62 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i-~~~---~~~L~v~V~   62 (243)
                      ...++|+|+|++|+||..++..+.+||||+                   ++.+|+|||+|.|.+ ...   ...|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            456799999999999999888899999998                   678999999999974 322   347999999


Q ss_pred             ecCCCC--CCceeeEEEEEchHhhhcCCCCCceeec
Q 038128           63 NSNTIT--GDDFIGSGKVQLTKAITQGYDDNPWPLW   96 (243)
Q Consensus        63 d~~~~~--~d~~IG~~~i~L~~l~~~~~~~~~~~L~   96 (243)
                      |.+.++  ++++||++.|+|+++.... ...||.|.
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            998763  4569999999999876544 35688874

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=116.51  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=68.2

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCC-CCcEEe-----------------CCCCCcccceEEEEe-eCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSK-QDPYVY-----------------GGKNPTFQEKFMFPL-IHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~-~dPYv~-----------------~~~nP~WnE~f~f~i-~~~---~~~L~v~V~d   63 (243)
                      .+.+.|+|+|++|+||+.++..+. +|+||+                 ++.||+|||+|.|.. ...   ...|+|+|||
T Consensus        19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            456789999999999998877664 799998                 778999999999974 322   3469999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhh
Q 038128           64 SNTITGDDFIGSGKVQLTKAIT   85 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~   85 (243)
                      ++.+++|++||++.|+|+++..
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCCCcEEEEEEEEcccccC
Confidence            9999999999999999998743

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=4.6e-15  Score=116.83  Aligned_cols=76  Identities=26%  Similarity=0.367  Sum_probs=68.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||+..+..+.+|+||+                   ++.||+|||+|.|.|...   ...|+|+|||+
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            45799999999999999998899999999                   678999999999998643   34799999999


Q ss_pred             CCCCCCceeeEEEEEchH
Q 038128           65 NTITGDDFIGSGKVQLTK   82 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~   82 (243)
                      +.++++++||++.|.|..
T Consensus       103 ~~~~~~~~iG~~~i~l~~  120 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNS  120 (157)
T ss_dssp             CSSSCCCEEEEEEEETTC
T ss_pred             CCCCCCceeEEEEEeccc
Confidence            999999999999999964

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=9.6e-16  Score=117.59  Aligned_cols=92  Identities=22%  Similarity=0.411  Sum_probs=76.8

Q ss_pred             ccCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEe
Q 038128            6 VQGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWN   63 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d   63 (243)
                      ...++|+|+|++|+||..++..+.+|+||+                   ++.+|+|||+|.|.|...   ...|+|+|||
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            467899999999999999888889999998                   778999999999998643   3479999999


Q ss_pred             cCCCCCCceeeEEEEEchHhhhcCCCCCceeecCCC
Q 038128           64 SNTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRS   99 (243)
Q Consensus        64 ~~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~   99 (243)
                      ++.+++|++||++.|.|.++...  ...|++|....
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~~--~~~W~~l~~~~  125 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGER--LKHWYECLKNK  125 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHH--HHHHHHHHHCT
T ss_pred             CCCCCCCCEEEEEEeCccccCcc--hhhhhhHhhCC
Confidence            99999999999999999865332  24577776543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.1e-15  Score=114.56  Aligned_cols=89  Identities=20%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||..++..+.+|+||+                   ++.||+|||+|.|.+...   ...|+|+|||+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            56789999999999999998889999998                   678999999999998543   23699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +.+++|++||++.|.|.....  ....|++|+.
T Consensus        93 ~~~~~~~~iG~~~i~l~~~~~--~~~hW~~ll~  123 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAEGS--GGGHWKEICD  123 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCCSH--HHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEEcchhCCc--hHHHHHHHHh
Confidence            999999999999999875321  1234666553

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=1.5e-14  Score=109.73  Aligned_cols=95  Identities=11%  Similarity=0.063  Sum_probs=73.7

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCCCceEEEEEEecCCCCCC
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHGVNEMNLVVWNSNTITGD   70 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~~~~L~v~V~d~~~~~~d   70 (243)
                      .|+|+|....--......+.+||||+                   +|+||+|||+|+|.|.+ .+.|.|.|||+|    |
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            35666655422233445678999999                   68899999999999975 467999999986    7


Q ss_pred             ceeeEEEEEchHhhhc-----CCCCCceeecCCCCccceEEEEEEEEEe
Q 038128           71 DFIGSGKVQLTKAITQ-----GYDDNPWPLWTRSGKHAGEVNIILRCAN  114 (243)
Q Consensus        71 ~~IG~~~i~L~~l~~~-----~~~~~~~~L~~~~g~~~G~L~l~l~~~~  114 (243)
                      +++|.+.|.+.+|...     ...+.|+.|.     ..|+|+|+++|..
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEec
Confidence            8999999999998653     2334788886     6899999999975

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=7.6e-16  Score=119.65  Aligned_cols=90  Identities=23%  Similarity=0.310  Sum_probs=74.3

Q ss_pred             cCceEEEEEEEeeCCCCCCCCCCCCcEEe-------------------CCCCCcccceEEEEeeCC---CceEEEEEEec
Q 038128            7 QGQPLEVTVIACKGLKDTEWLSKQDPYVY-------------------GGKNPTFQEKFMFPLIHG---VNEMNLVVWNS   64 (243)
Q Consensus         7 ~~~~L~V~V~~A~~L~~~~~~g~~dPYv~-------------------~~~nP~WnE~f~f~i~~~---~~~L~v~V~d~   64 (243)
                      ..++|+|+|++|+||...+..+.+|+||+                   ++.||+|||+|.|.|...   ...|+|+|||+
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            56799999999999999888899999999                   677999999999998643   34699999999


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecC
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWT   97 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~   97 (243)
                      +.+++|++||++.|.|+.+... ....|++|+.
T Consensus        98 ~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~~  129 (145)
T d1dqva2          98 DCIGHNEVIGVCRVGPEAADPH-GREHWAEMLA  129 (145)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHH-HHHHHHTSSS
T ss_pred             CCCCCCcEEEEEEECchHcCch-hhHHHHHHHh
Confidence            9999999999999999865322 2235666653

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.3e-12  Score=98.56  Aligned_cols=93  Identities=20%  Similarity=0.355  Sum_probs=70.5

Q ss_pred             eEEEEEEEeeCCCCCCCCCCCCcEEe----------------------CCCCCcccce-EEEE-eeC-CCceEEEEEEec
Q 038128           10 PLEVTVIACKGLKDTEWLSKQDPYVY----------------------GGKNPTFQEK-FMFP-LIH-GVNEMNLVVWNS   64 (243)
Q Consensus        10 ~L~V~V~~A~~L~~~~~~g~~dPYv~----------------------~~~nP~WnE~-f~f~-i~~-~~~~L~v~V~d~   64 (243)
                      +|+|+|++|++|+.+    +.||||+                      ++.||+|||+ |.|. +.. ....|+|+|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            689999999999865    4799999                      5689999976 4443 333 344799999998


Q ss_pred             CCCCCCceeeEEEEEchHhhhcCCCCCceeecCCCCc--cceEEEEEEEEE
Q 038128           65 NTITGDDFIGSGKVQLTKAITQGYDDNPWPLWTRSGK--HAGEVNIILRCA  113 (243)
Q Consensus        65 ~~~~~d~~IG~~~i~L~~l~~~~~~~~~~~L~~~~g~--~~G~L~l~l~~~  113 (243)
                      +    |+|||++.|+|+.|..   ..+++.|.+..++  ....|.+.|++.
T Consensus        78 d----~~~lG~~~ipl~~l~~---GyR~vpL~~~~g~~l~~~~L~v~i~~~  121 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNS---GYHHLCLHSESNMPLTMPALFIFLEMK  121 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCC---EEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             C----CCEEEEEEEEcccCcC---CceEEEccCCCcCCCCCceEEEEEEEE
Confidence            5    7999999999997633   2467788877775  355666666654

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.28  Score=36.05  Aligned_cols=106  Identities=11%  Similarity=0.120  Sum_probs=71.1

Q ss_pred             ccCceEEEEEEEeeCCCCCC----CCCCCCcEEe--------------CCCCCcccceEEEEeeCC--------CceEEE
Q 038128            6 VQGQPLEVTVIACKGLKDTE----WLSKQDPYVY--------------GGKNPTFQEKFMFPLIHG--------VNEMNL   59 (243)
Q Consensus         6 ~~~~~L~V~V~~A~~L~~~~----~~g~~dPYv~--------------~~~nP~WnE~f~f~i~~~--------~~~L~v   59 (243)
                      ...+.++|.|.++. |....    .......||.              .+.+|.+|.+..|.+..+        ...|.|
T Consensus         7 ~gEnlfEihi~~~~-~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~l   85 (142)
T d2yrba1           7 RGENLFEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   85 (142)
T ss_dssp             SSCEEEEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEEEeeEE-EcHHHHhhccCCCCcEEEEEEEEeeeeecCceecCCCCcceeEEEEEEccCHHHHHHHhhCCEEE
Confidence            45678889998872 22110    0122345777              788999999888888543        245899


Q ss_pred             EEEecCCCCCCceeeEEEEEchHhhhcCCC-CCceeecCCCCc--cceEEEEEEEEE
Q 038128           60 VVWNSNTITGDDFIGSGKVQLTKAITQGYD-DNPWPLWTRSGK--HAGEVNIILRCA  113 (243)
Q Consensus        60 ~V~d~~~~~~d~~IG~~~i~L~~l~~~~~~-~~~~~L~~~~g~--~~G~L~l~l~~~  113 (243)
                      +||..... .-..|+.+.|.|.++++.... .....|....++  .-|.|...+|+.
T Consensus        86 elhqa~g~-~~~tvA~g~i~l~~lLd~~~r~~~s~~l~g~~~~~~~~G~leyw~rlr  141 (142)
T d2yrba1          86 EVHQAYST-EYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR  141 (142)
T ss_dssp             EEEEECSS-CEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             EEEeecCC-CcceeEEEEEEhhHhhCccccccceeEEEccCCCcceEEEEEEEEEEE
Confidence            99987633 345899999999999876432 223455555544  578888888764