Citrus Sinensis ID: 038167

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290--
MKRQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL
ccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccHHHHHHcccccccccccEEEccccHHHHHHHHHHHHHHcHHEEcccccccccHHHHHHHHHHHHHcccccccccccc
cccccccccccHcHHHHHHHHHHcHHHccccccccEEEEEEccccHHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHccHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHcccccHHHccHHHHHccccccccccccEEEEEcccccccccccHHHcccEEEEccccHHHccHHHHHHHHHHHHHHHHHcccccccc
MKRQVGAEESKLCRKLGVFMRKCVFGILsvgvipnhiaFILDGNRRFAKKhnlagegaghraGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLRedgflskyGVRVCFIgnlglvsepIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLvtkktqpqafkprnpqndvtedadehknkeqnTIKLVDLEKhmymgvypnpdilirtsgenrLSNFLLWqssncmlyspaalwpeiGLRHLIWAILNFQRHHAYLEKKKKQL
mkrqvgaeeskLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGnlglvsepiRVTAEKVmratskntrIVILICLAYSSTEEIVHTVEETCLVtkktqpqafkprnpqndvtedadehknkeqntiKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL
MKRQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL
***********LCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVT*******************************IKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYL*******
*************RKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKK****
*********SKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL
**********KLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLE******
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SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
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MKRQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query292 2.2.26 [Sep-21-2011]
Q8S2T1295 Dehydrodolichyl diphospha yes no 0.982 0.972 0.558 2e-93
Q8W3U4284 Rubber cis-polyprenyltran N/A no 0.945 0.971 0.524 3e-83
Q8LAR7272 Dehydrodolichyl diphospha no no 0.910 0.977 0.434 3e-68
Q8LED0271 Dehydrodolichyl diphospha no no 0.893 0.963 0.438 1e-65
Q99KU1333 Dehydrodolichyl diphospha yes no 0.856 0.750 0.376 1e-43
Q86SQ9333 Dehydrodolichyl diphospha yes no 0.856 0.750 0.373 4e-43
Q8RA26247 Isoprenyl transferase OS= yes no 0.756 0.894 0.380 6e-43
P35196286 Dehydrodolichyl diphospha yes no 0.770 0.786 0.351 2e-37
Q8GDY3260 Isoprenyl transferase OS= N/A no 0.756 0.85 0.360 4e-37
O87197263 Isoprenyl transferase OS= yes no 0.784 0.870 0.337 1e-33
>sp|Q8S2T1|DDPS6_ARATH Dehydrodolichyl diphosphate synthase 6 OS=Arabidopsis thaliana GN=At2g17570 PE=2 SV=2 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 225/290 (77%), Gaps = 3/290 (1%)

Query: 3   RQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRA 62
           R +G   S+L  ++  F R+ +F ++S+G IP HIAFI+DGNRR+AKK  L  +G+GH+A
Sbjct: 9   RHIGGRMSQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLL-DGSGHKA 67

Query: 63  GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSK 122
           GF  LMS+L+YC EL +KYV+IYAFSIDNF+R   E+  +MDLMLEK++ LL ++  + +
Sbjct: 68  GFSALMSMLQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQ 127

Query: 123 YGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVT 182
           YG+RV FIGNL L+++ +R  AEKVM+AT+KN+R+V+LIC+AY+ST+EIV  V+++C + 
Sbjct: 128 YGIRVYFIGNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQAVKKSC-IN 186

Query: 183 KKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENR 242
           K    +A   ++  +D   +  + +N+E+  I+LVD+E++M M V PNPDILIR+SGE R
Sbjct: 187 KSDNIEASNYKHEDSDSDIEGTDMENQEKK-IQLVDIEENMQMSVAPNPDILIRSSGETR 245

Query: 243 LSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL 292
           LSNFLLWQ+ N  L SPAALWPEIGLRHL+WAILNFQR+H+YLEK+KKQL
Sbjct: 246 LSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295
Catalyzes cis-prenyl chain elongation to produce the polyprenyl backbone of dolichol, a glycosyl carrier-lipid required for the biosynthesis of several classes of glycoprotein.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q8W3U4|HRT2_HEVBR Rubber cis-polyprenyltransferase HRT2 OS=Hevea brasiliensis GN=HRT2 PE=1 SV=1 Back     alignment and function description
>sp|Q8LAR7|DDPS8_ARATH Dehydrodolichyl diphosphate synthase 8 OS=Arabidopsis thaliana GN=At5g60510 PE=2 SV=2 Back     alignment and function description
>sp|Q8LED0|DDPS7_ARATH Dehydrodolichyl diphosphate synthase 7 OS=Arabidopsis thaliana GN=At5g60500 PE=2 SV=1 Back     alignment and function description
>sp|Q99KU1|DHDDS_MOUSE Dehydrodolichyl diphosphate synthase OS=Mus musculus GN=Dhdds PE=2 SV=1 Back     alignment and function description
>sp|Q86SQ9|DHDDS_HUMAN Dehydrodolichyl diphosphate synthase OS=Homo sapiens GN=DHDDS PE=1 SV=3 Back     alignment and function description
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|P35196|RER2_YEAST Dehydrodolichyl diphosphate synthase RER2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RER2 PE=1 SV=1 Back     alignment and function description
>sp|Q8GDY3|ISPT_HELMO Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1 Back     alignment and function description
>sp|O87197|ISPT_THET2 Isoprenyl transferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=uppS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
224084084287 predicted protein [Populus trichocarpa] 0.982 1.0 0.585 2e-96
225437860290 PREDICTED: dehydrodolichyl diphosphate s 0.993 1.0 0.582 6e-95
147774323384 hypothetical protein VITISV_029565 [Viti 0.993 0.755 0.578 2e-94
297832372296 undecaprenyl pyrophosphate synthetase fa 0.986 0.972 0.544 3e-93
356529679308 PREDICTED: dehydrodolichyl diphosphate s 0.941 0.892 0.579 1e-92
18398467295 dehydrodolichyl diphosphate synthase 6 [ 0.982 0.972 0.558 1e-91
20336659295 hypothetical protein [Arabidopsis thalia 0.982 0.972 0.558 3e-91
359497722271 PREDICTED: LOW QUALITY PROTEIN: dehydrod 0.910 0.981 0.566 2e-89
297744131269 unnamed protein product [Vitis vinifera] 0.921 1.0 0.558 4e-89
255582899331 undecaprenyl diphosphate synthase, putat 0.941 0.830 0.518 2e-87
>gi|224084084|ref|XP_002307209.1| predicted protein [Populus trichocarpa] gi|222856658|gb|EEE94205.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  358 bits (919), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 171/292 (58%), Positives = 223/292 (76%), Gaps = 5/292 (1%)

Query: 1   MKRQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGH 60
           M +  G+  S+L   LG F RKC+F ILS+G IPNH AFI+DGNRR+AKK  L  EGAGH
Sbjct: 1   MDKHRGSRLSELFGSLGSFFRKCMFCILSMGPIPNHFAFIMDGNRRYAKKEKLE-EGAGH 59

Query: 61  RAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFL 120
           RAGF  LMS+LKYC EL V YV+IYAFSI+NFKR  +E++ LMDL+LEK+E LL+E+  +
Sbjct: 60  RAGFSVLMSMLKYCYELGVTYVTIYAFSIENFKRKPDEVQNLMDLILEKIEGLLKEESLV 119

Query: 121 SKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCL 180
           +KYG+RV FIGNL L+S+P+RV AEKVM+AT+ NT+ V+LIC+AY+S +EIV  V E+C 
Sbjct: 120 NKYGIRVYFIGNLKLLSKPVRVAAEKVMKATANNTKCVLLICIAYTSCDEIVQAVHESC- 178

Query: 181 VTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGE 240
              K + +  +P N     +   +E    + + +K+VD+E HMYM V PNPDI+IR+SGE
Sbjct: 179 ---KNKWEEIQPCNSHKSFSGRVEEKLLVDLSILKVVDIESHMYMSVAPNPDIVIRSSGE 235

Query: 241 NRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL 292
            RLSNFLLWQ+SNC+LYSP ALWP++ L HL+WA+L+FQR+H+Y EKKKKQ 
Sbjct: 236 TRLSNFLLWQTSNCLLYSPNALWPDMRLWHLVWAVLDFQRNHSYFEKKKKQF 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437860|ref|XP_002263977.1| PREDICTED: dehydrodolichyl diphosphate synthase 6-like isoform 1 [Vitis vinifera] gi|359480265|ref|XP_003632424.1| PREDICTED: dehydrodolichyl diphosphate synthase 6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774323|emb|CAN61413.1| hypothetical protein VITISV_029565 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297832372|ref|XP_002884068.1| undecaprenyl pyrophosphate synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329908|gb|EFH60327.1| undecaprenyl pyrophosphate synthetase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356529679|ref|XP_003533416.1| PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|18398467|ref|NP_565420.1| dehydrodolichyl diphosphate synthase 6 [Arabidopsis thaliana] gi|84029498|sp|Q8S2T1.2|DDPS6_ARATH RecName: Full=Dehydrodolichyl diphosphate synthase 6; Short=Dedol-PP synthase 6 gi|20198261|gb|AAD32914.2| expressed protein [Arabidopsis thaliana] gi|61742588|gb|AAX55115.1| hypothetical protein At2g17570 [Arabidopsis thaliana] gi|330251560|gb|AEC06654.1| dehydrodolichyl diphosphate synthase 6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20336659|gb|AAM19345.1|AF499435_1 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359497722|ref|XP_003635620.1| PREDICTED: LOW QUALITY PROTEIN: dehydrodolichyl diphosphate synthase 6-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744131|emb|CBI37101.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582899|ref|XP_002532221.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] gi|223528078|gb|EEF30152.1| undecaprenyl diphosphate synthase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query292
TAIR|locus:2053903295 cPT1 "cis-prenyltransferase 1" 0.982 0.972 0.558 8.9e-86
TAIR|locus:2175183272 cPT9 "cis-prenyltransferase 9" 0.626 0.672 0.451 4.2e-65
TAIR|locus:2175168271 cPT8 "cis-prenyltransferase 8" 0.592 0.638 0.456 3.3e-63
MGI|MGI:1914672333 Dhdds "dehydrodolichyl diphosp 0.551 0.483 0.374 2.9e-44
UNIPROTKB|J9P7C8333 DHDDS "Uncharacterized protein 0.551 0.483 0.386 3.7e-44
RGD|1311560333 Dhdds "dehydrodolichyl diphosp 0.551 0.483 0.380 7.6e-44
UNIPROTKB|Q86SQ9333 DHDDS "Dehydrodolichyl diphosp 0.551 0.483 0.380 7.6e-44
UNIPROTKB|Q58DN9316 DHDDS "Dehydrodolichyl diphosp 0.551 0.509 0.380 5.2e-43
ZFIN|ZDB-GENE-040426-2236335 dhdds "dehydrodolichyl diphosp 0.551 0.480 0.374 6.7e-43
UNIPROTKB|E1C3V5333 DHDDS "Uncharacterized protein 0.551 0.483 0.374 5.9e-42
TAIR|locus:2053903 cPT1 "cis-prenyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 162/290 (55%), Positives = 225/290 (77%)

Query:     3 RQVGAEESKLCRKLGVFMRKCVFGILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRA 62
             R +G   S+L  ++  F R+ +F ++S+G IP HIAFI+DGNRR+AKK  L  +G+GH+A
Sbjct:     9 RHIGGRMSQLLEQIYGFSRRSLFRVISMGPIPCHIAFIMDGNRRYAKKCGLL-DGSGHKA 67

Query:    63 GFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSK 122
             GF  LMS+L+YC EL +KYV+IYAFSIDNF+R   E+  +MDLMLEK++ LL ++  + +
Sbjct:    68 GFSALMSMLQYCYELGIKYVTIYAFSIDNFRRKPEEVESVMDLMLEKIKSLLEKESIVHQ 127

Query:   123 YGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVT 182
             YG+RV FIGNL L+++ +R  AEKVM+AT+KN+R+V+LIC+AY+ST+EIV  V+++C + 
Sbjct:   128 YGIRVYFIGNLALLNDQVRAAAEKVMKATAKNSRVVLLICIAYNSTDEIVQAVKKSC-IN 186

Query:   183 KKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENR 242
             K    +A   ++  +D   +  + +N+E+  I+LVD+E++M M V PNPDILIR+SGE R
Sbjct:   187 KSDNIEASNYKHEDSDSDIEGTDMENQEKK-IQLVDIEENMQMSVAPNPDILIRSSGETR 245

Query:   243 LSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQRHHAYLEKKKKQL 292
             LSNFLLWQ+ N  L SPAALWPEIGLRHL+WAILNFQR+H+YLEK+KKQL
Sbjct:   246 LSNFLLWQTGNTQLCSPAALWPEIGLRHLLWAILNFQRNHSYLEKRKKQL 295
GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA
TAIR|locus:2175183 cPT9 "cis-prenyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175168 cPT8 "cis-prenyltransferase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1914672 Dhdds "dehydrodolichyl diphosphate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J9P7C8 DHDDS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311560 Dhdds "dehydrodolichyl diphosphate synthase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q86SQ9 DHDDS "Dehydrodolichyl diphosphate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DN9 DHDDS "Dehydrodolichyl diphosphate synthase isoform a" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2236 dhdds "dehydrodolichyl diphosphate synthase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3V5 DHDDS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5SH15ISPT_THET82, ., 5, ., 1, ., 3, 10.32460.84930.9429yesno
Q8TXA7UPPS_METKA2, ., 5, ., 1, ., 8, 90.31720.88350.9520yesno
Q8S2T1DDPS6_ARATH2, ., 5, ., 1, ., -0.55860.98280.9728yesno
Q9K1G6ISPT_NEIMB2, ., 5, ., 1, ., 3, 10.30400.82530.9717yesno
Q5F5X2ISPT_NEIG12, ., 5, ., 1, ., 3, 10.30760.82530.9717yesno
Q8W3U4HRT2_HEVBR2, ., 5, ., 1, ., 2, 00.52430.94520.9718N/Ano
Q82TZ9ISPT_NITEU2, ., 5, ., 1, ., 3, 10.31460.81500.9049yesno
Q9JX35ISPT_NEIMA2, ., 5, ., 1, ., 3, 10.30030.82530.9717yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.5.1.310.824
3rd Layer2.5.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.V.3639.1
hypothetical protein (287 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
     •• 0.919
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0045022601
hypothetical protein (259 aa)
     •  0.899
grail3.0001025501
hypothetical protein (314 aa)
     •  0.899
fgenesh4_pm.C_LG_II001087
hypothetical protein (287 aa)
     •  0.899
estExt_Genewise1_v1.C_570227
hypothetical protein (366 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
pfam01255222 pfam01255, Prenyltransf, Putative undecaprenyl dip 5e-82
COG0020245 COG0020, UppS, Undecaprenyl pyrophosphate synthase 3e-66
cd00475221 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate S 5e-66
TIGR00055226 TIGR00055, uppS, undecaprenyl diphosphate synthase 9e-61
PRK14830251 PRK14830, PRK14830, undecaprenyl pyrophosphate syn 2e-52
PRK14836253 PRK14836, PRK14836, undecaprenyl pyrophosphate syn 7e-44
PRK14831249 PRK14831, PRK14831, undecaprenyl pyrophosphate syn 9e-43
PRK14832253 PRK14832, PRK14832, undecaprenyl pyrophosphate syn 2e-39
PRK14838242 PRK14838, PRK14838, undecaprenyl pyrophosphate syn 2e-38
PRK14828256 PRK14828, PRK14828, undecaprenyl pyrophosphate syn 7e-38
PRK14834249 PRK14834, PRK14834, undecaprenyl pyrophosphate syn 3e-37
PRK14842241 PRK14842, PRK14842, undecaprenyl pyrophosphate syn 3e-37
PRK14841233 PRK14841, PRK14841, undecaprenyl pyrophosphate syn 4e-37
PRK14835275 PRK14835, PRK14835, undecaprenyl pyrophosphate syn 1e-36
PRK14829243 PRK14829, PRK14829, undecaprenyl pyrophosphate syn 2e-36
PRK14833233 PRK14833, PRK14833, undecaprenyl pyrophosphate syn 7e-35
PRK14840250 PRK14840, PRK14840, undecaprenyl pyrophosphate syn 1e-31
PRK14827296 PRK14827, PRK14827, undecaprenyl pyrophosphate syn 5e-29
PRK14839239 PRK14839, PRK14839, undecaprenyl pyrophosphate syn 7e-28
PRK14837230 PRK14837, PRK14837, undecaprenyl pyrophosphate syn 7e-26
PTZ00349322 PTZ00349, PTZ00349, dehydrodolichyl diphosphate sy 5e-25
PRK10240229 PRK10240, PRK10240, undecaprenyl pyrophosphate syn 2e-21
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase Back     alignment and domain information 
 Score =  246 bits (630), Expect = 5e-82
 Identities = 93/242 (38%), Positives = 131/242 (54%), Gaps = 26/242 (10%)

Query: 40  ILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEI 99
           I+DGNRR+AKK  L     GHRAG   +  +L++C EL +KY+++YAFS +N+KR + E+
Sbjct: 1   IMDGNRRWAKKRGLP-RTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEV 59

Query: 100 RYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVI 159
            +LM+L+  K+    R    L K GVRV  IG+L L+ E +R   E    AT  NT + +
Sbjct: 60  DFLMELLERKLR---RLLEDLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTL 116

Query: 160 LICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDL 219
            I L Y   +EIV  V+      +        P     D+ E+                +
Sbjct: 117 NIALNYGGRDEIVDAVKRLA---RDVADGKLSP----EDIDEEV---------------I 154

Query: 220 EKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLIWAILNFQ 279
           EK++Y    P+PD+LIRTSGE RLSNFLLWQS+   LY    LWP+     L+ AI ++Q
Sbjct: 155 EKYLYTSDLPDPDLLIRTSGEKRLSNFLLWQSAYAELYFTDTLWPDFTKEDLLRAIRDYQ 214

Query: 280 RH 281
             
Sbjct: 215 SR 216

Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase. Length = 222
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 292
PRK14837230 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14832253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14828256 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14835275 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14842241 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14838242 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14833233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14831249 undecaprenyl pyrophosphate synthase; Provisional 100.0
TIGR00055226 uppS undecaprenyl diphosphate synthase. Alternate 100.0
PRK14840250 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14836253 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14829243 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14841233 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14834249 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14830251 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14827296 undecaprenyl pyrophosphate synthase; Provisional 100.0
PRK14839239 undecaprenyl pyrophosphate synthase; Provisional 100.0
KOG1602271 consensus Cis-prenyltransferase [Lipid transport a 100.0
PTZ00349322 dehydrodolichyl diphosphate synthetase; Provisiona 100.0
cd00475221 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases ( 100.0
COG0020245 UppS Undecaprenyl pyrophosphate synthase [Lipid me 100.0
PRK10240229 undecaprenyl pyrophosphate synthase; Provisional 100.0
PF01255223 Prenyltransf: Putative undecaprenyl diphosphate sy 100.0
KOG2818263 consensus Predicted undecaprenyl diphosphate synth 99.83
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.2e-86  Score=597.53  Aligned_cols=229  Identities=28%  Similarity=0.509  Sum_probs=218.3

Q ss_pred             CCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHH
Q 038167           29 SVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLE  108 (292)
Q Consensus        29 ~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~  108 (292)
                      ..+++|+|||||||||||||+++|++ ...||.+|++++.+++.||.++||++|||||||+|||+||++||+.||+++.+
T Consensus         2 ~~~~~P~HVAiImDGNrRwAk~~gl~-~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~   80 (230)
T PRK14837          2 NKNSLPSHVGIIMDGNRRWALKKGLS-FFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIAD   80 (230)
T ss_pred             CCCCCCCeEEEEccCCHHHHHHCCCc-hhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence            34789999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCC
Q 038167          109 KMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQ  188 (292)
Q Consensus       109 ~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~  188 (292)
                      ++.+...   .++++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++..      
T Consensus        81 ~l~~~~~---~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~------  151 (230)
T PRK14837         81 YLSSEFN---FYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSSG------  151 (230)
T ss_pred             HHHHHHH---HHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhcC------
Confidence            9976554   3778899999999999999999999999999999999999999999999999999999998430      


Q ss_pred             CCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCH
Q 038167          189 AFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGL  268 (292)
Q Consensus       189 ~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~  268 (292)
                                          +++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+.
T Consensus       152 --------------------~~~~~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~  211 (230)
T PRK14837        152 --------------------LDLETLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYV  211 (230)
T ss_pred             --------------------CChhhCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCH
Confidence                                356789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 038167          269 RHLIWAILNFQRHHAYLEK  287 (292)
Q Consensus       269 ~df~~al~~yq~r~~r~gk  287 (292)
                      +||.+||.+||+|++|||+
T Consensus       212 ~dl~~ai~~y~~R~RrfG~  230 (230)
T PRK14837        212 NHYSKDLECFKNRKRNFGR  230 (230)
T ss_pred             HHHHHHHHHHhcccCcCCC
Confidence            9999999999999999996

>PRK14832 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>TIGR00055 uppS undecaprenyl diphosphate synthase Back     alignment and domain information
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional Back     alignment and domain information
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates Back     alignment and domain information
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional Back     alignment and domain information
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2 Back     alignment and domain information
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
1f75_A249 Crystal Structure Of Undecaprenyl Diphosphate Synth 3e-27
4h8e_A256 Structure Of S. Aureus Undecaprenyl Diphosphate Syn 1e-26
2vfw_A227 Rv1086 Native Length = 227 2e-23
2vg1_A228 Rv1086 E,E-Farnesyl Diphosphate Complex Length = 22 2e-23
2vg2_A284 Rv2361 With Ipp Length = 284 1e-22
1ueh_A253 E. Coli Undecaprenyl Pyrophosphate Synthase In Comp 2e-21
2d2r_A245 Crystal Structure Of Helicobacter Pylori Undecapren 6e-21
1x08_A253 Crystal Structure Of D26a Mutant Upps In Complex Wi 2e-20
1jp3_A253 Structure Of E.Coli Undecaprenyl Pyrophosphate Synt 9e-20
3ugs_B225 Crystal Structure Of A Probable Undecaprenyl Diphos 1e-17
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase From Micrococcus Luteus B-P 26 Length = 249 Back     alignment and structure 
Iteration: 1

 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 26/255 (10%)
Query: 28  LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAF 87
           ++   IP HIA I+DGN R+AK+  +     GH  G  T+  + +Y ++L VKY+++YAF
Sbjct: 15  INAAQIPKHIAIIMDGNGRWAKQKKMP-RIKGHYEGMQTVRKITRYASDLGVKYLTLYAF 73
Query: 88  SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKV 147
           S +N+ R ++E+ YLM L  + +   L E   L +  V+V  IG +  + +  +    + 
Sbjct: 74  STENWSRPKDEVNYLMKLPGDFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEA 130
Query: 148 MRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHK 207
              T  NT + ++  L Y   +EI+  V            Q    R    +++ D     
Sbjct: 131 KEKTKHNTGLTLVFALNYGGRKEIISAV------------QLIAERYKSGEISLDE---- 174
Query: 208 NKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIG 267
                 I      ++++    P+P++LIRTSGE RLSNFL+WQ S          WP+  
Sbjct: 175 ------ISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFN 228
Query: 268 LRHLIWAILNFQRHH 282
              L   I  +Q  H
Sbjct: 229 EESLAQCISIYQNRH 243
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase In Complex With Fpp And Sulfate Length = 256 Back     alignment and structure
>pdb|2VFW|A Chain A, Rv1086 Native Length = 227 Back     alignment and structure
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex Length = 228 Back     alignment and structure
>pdb|2VG2|A Chain A, Rv2361 With Ipp Length = 284 Back     alignment and structure
>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex With Triton X- 100, Magnesium And Sulfate Length = 253 Back     alignment and structure
>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl Pyrophosphate Synthase Length = 245 Back     alignment and structure
>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg, Ipp And Fspp Length = 253 Back     alignment and structure
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase Length = 253 Back     alignment and structure
>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate Synthase (Upps) From Campylobacter Jejuni Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query292
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 7e-69
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 8e-66
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 1e-64
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 4e-64
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 8e-64
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 5e-63
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Length = 227 Back     alignment and structure
 Score =  212 bits (542), Expect = 7e-69
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 23/248 (9%)

Query: 33  IPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNF 92
           +P HIA + DGNRR+A+         G+R G   +  +L++C E  ++  ++Y  S +N 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 93  KRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATS 152
           +R  +E+  L++++ + +E +             V  +G+LGL+ E         + +T 
Sbjct: 62  QRDPDELAALIEIITDVVEEICAP-----ANHWSVRTVGDLGLIGEEPARRLRGAVESTP 116

Query: 153 KNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHKNKEQN 212
           +     + + + Y    EIV  V     +  K            + VT +          
Sbjct: 117 EVASFHVNVAVGYGGRREIVDAVRA---LLSKELANGATAEELVDAVTVE---------- 163

Query: 213 TIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRHLI 272
                 + +++Y    P+PD++IRTSGE RLS FLLWQS+   ++   A WP       +
Sbjct: 164 -----GISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFL 218

Query: 273 WAILNFQR 280
            A+ ++  
Sbjct: 219 RALRDYSA 226
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Length = 249 Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Length = 284 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Length = 253 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Length = 245 Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} Length = 225 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
4h8e_A256 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
3sgv_B253 Undecaprenyl pyrophosphate synthase; alpha/beta, t 100.0
3ugs_B225 Undecaprenyl pyrophosphate synthase; niaid, csgid, 100.0
2d2r_A245 Undecaprenyl pyrophosphate synthase; prenyltransfe 100.0
1f75_A249 Undecaprenyl pyrophosphate synthetase; parallel be 100.0
3qas_B253 Undecaprenyl pyrophosphate synthase; alpha-helix, 100.0
2vg3_A284 Undecaprenyl pyrophosphate synthetase; transferase 100.0
2vg0_A227 Short-chain Z-isoprenyl diphosphate synthetase; pe 100.0
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=1.2e-88  Score=619.14  Aligned_cols=238  Identities=30%  Similarity=0.528  Sum_probs=226.3

Q ss_pred             hcCCCCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHH
Q 038167           27 ILSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLM  106 (292)
Q Consensus        27 ~l~~~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~  106 (292)
                      .+..+++|+|||||||||||||+++|++ ...||..|++++.++++||.++||++||+||||||||+||++||++||+++
T Consensus        18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~   96 (256)
T 4h8e_A           18 ELDSSNIPEHIAIIMDGNGRWAKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLP   96 (256)
T ss_dssp             -CCTTCCCSEEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHH
Confidence            4677899999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccC
Q 038167          107 LEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQ  186 (292)
Q Consensus       107 ~~~l~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~  186 (292)
                      .+++.+.+.   .++++||||+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++..+.
T Consensus        97 ~~~l~~~~~---~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~  173 (256)
T 4h8e_A           97 VNFLKTFLP---ELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQG  173 (256)
T ss_dssp             HHHHHHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH---HHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCC
Confidence            999988764   36789999999999999999999999999999999999999999999999999999999999976421


Q ss_pred             CCCCCCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCC
Q 038167          187 PQAFKPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEI  266 (292)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf  266 (292)
                                            ++|++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||
T Consensus       174 ----------------------l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF  231 (256)
T 4h8e_A          174 ----------------------LNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF  231 (256)
T ss_dssp             ----------------------CCGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGC
T ss_pred             ----------------------CChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccC
Confidence                                  5788999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhhhhhc
Q 038167          267 GLRHLIWAILNFQRHHAYLEKKKK  290 (292)
Q Consensus       267 ~~~df~~al~~yq~r~~r~gk~~~  290 (292)
                      +.+||.+||.+||+|++|||+.++
T Consensus       232 ~~~dl~~Ai~~yq~R~RRfG~~~~  255 (256)
T 4h8e_A          232 DEDELIKCIKIYQSRQRRFGGLSE  255 (256)
T ss_dssp             CHHHHHHHHHHHHHCCCCTTCC--
T ss_pred             CHHHHHHHHHHHHhhhhccCCCCC
Confidence            999999999999999999999875
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ... Back     alignment and structure
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0 Back     alignment and structure
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Back     alignment and structure
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Back     alignment and structure
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A* Back     alignment and structure
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Back     alignment and structure
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 292
d1f75a_229 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 9e-54
d1ueha_228 c.101.1.1 (A:) Undecaprenyl diphosphate synthase { 4e-53
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Length = 229 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Micrococcus luteus [TaxId: 1270]

 Score =  172 bits (437), Expect = 9e-54
 Identities = 70/253 (27%), Positives = 117/253 (46%), Gaps = 26/253 (10%)

Query: 28  LSVGVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAF 87
           ++   IP HIA I+DGN R+AK+  +     GH  G  T+  + +Y ++L VKY+++YAF
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKM-PRIKGHYEGMQTVRKITRYASDLGVKYLTLYAF 60

Query: 88  SIDNFKRTQNEIRYLMDLMLEKMEFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKV 147
           S +N+ R ++E+ YLM L  + +   L E     +  V+V  IG +  + +  +    + 
Sbjct: 61  STENWSRPKDEVNYLMKLPGDFLNTFLPEL---IEKNVKVETIGFIDDLPDHTKKAVLEA 117

Query: 148 MRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAFKPRNPQNDVTEDADEHK 207
              T  NT + ++  L Y   +EI+  V+                         +  +  
Sbjct: 118 KEKTKHNTGLTLVFALNYGGRKEIISAVQLIA----------------------ERYKSG 155

Query: 208 NKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIG 267
               + I      ++++    P+P++LIRTSGE RLSNFL+WQ S          WP+  
Sbjct: 156 EISLDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFN 215

Query: 268 LRHLIWAILNFQR 280
              L   I  +Q 
Sbjct: 216 EESLAQCISIYQN 228
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query292
d1ueha_228 Undecaprenyl diphosphate synthase {Escherichia col 100.0
d1f75a_229 Undecaprenyl diphosphate synthase {Micrococcus lut 100.0
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 84.97
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Undecaprenyl diphosphate synthase
superfamily: Undecaprenyl diphosphate synthase
family: Undecaprenyl diphosphate synthase
domain: Undecaprenyl diphosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-82  Score=571.52  Aligned_cols=226  Identities=28%  Similarity=0.459  Sum_probs=201.1

Q ss_pred             CCCCCEEEEEecCCchHHHhcCCCccchhHHhHHHHHHHHHHHHHhCCCCeEEEEeeccCCCCCCHHHHHHHHHHHHHHH
Q 038167           31 GVIPNHIAFILDGNRRFAKKHNLAGEGAGHRAGFLTLMSLLKYCAELSVKYVSIYAFSIDNFKRTQNEIRYLMDLMLEKM  110 (292)
Q Consensus        31 ~~iP~HIaiImDGNRR~A~~~gl~~~~~Gh~~G~~~l~~ii~wc~~~GI~~vSvYafS~eN~~R~~~Ev~~Lm~l~~~~l  110 (292)
                      ...|+|||||||||||||+++|++ ..+||.+|++++.+++.||.++||++|||||||+|||+||++||++||.++.+++
T Consensus         3 ~~~P~HiaiImDGNrRwAk~~gl~-~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~~Ev~~Lm~l~~~~l   81 (228)
T d1ueha_           3 AHGCRHVAIIMDGNGRWAKKQGKI-RAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWAL   81 (228)
T ss_dssp             TTCCCEEEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC--------------CHHHHHHH
T ss_pred             CCCCCEEEEeccCCHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHcCCcEEEeehhhhhhcccccchhHHHHHHHHHHH
Confidence            458999999999999999999999 9999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHhhhccccccCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCCeEEEEEEecCCCHHHHHHHHHHHHHHhhccCCCCC
Q 038167          111 EFLLREDGFLSKYGVRVCFIGNLGLVSEPIRVTAEKVMRATSKNTRIVILICLAYSSTEEIVHTVEETCLVTKKTQPQAF  190 (292)
Q Consensus       111 ~~l~~~~~~~~~~~irv~~iGd~~~lp~~~~~~i~~~e~~T~~~~~~~lni~~~Y~Gr~EIv~a~~~l~~~~~~~~~~~~  190 (292)
                      .+...   .+++++|+|+|+|+++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++..+.    
T Consensus        82 ~~~~~---~~~~~~i~i~~iG~~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~----  154 (228)
T d1ueha_          82 DSEVK---SLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGN----  154 (228)
T ss_dssp             HHTHH---HHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTS----
T ss_pred             HHhHH---HHHhccEEEEEECCcchhhhhhhhhhhhHHHhccCCCCceEEEEeccccchHHHHHHHHHHHHHHhCC----
Confidence            76543   47789999999999999999999999999999999999999999999999999999999999875421    


Q ss_pred             CCCCCCCCCccchhhhcccCcCCCCHHHHHhhhhcCCCCCCcEEEeecCCcccCCccccccCceeEEecCCCCCCCCHHH
Q 038167          191 KPRNPQNDVTEDADEHKNKEQNTIKLVDLEKHMYMGVYPNPDILIRTSGENRLSNFLLWQSSNCMLYSPAALWPEIGLRH  270 (292)
Q Consensus       191 ~~~~~~~~~~~~~~e~~~~~~~~It~~~i~~~L~~~~~p~pDLlIRTsge~RLS~FLlWQs~ysEl~F~~~~WPdf~~~d  270 (292)
                                        +.+++|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..|
T Consensus       155 ------------------~~~~~i~~~~~~~~l~~~~~pdpDLlIRTsGe~RLSnFLlWQ~aysEl~F~d~lWPdf~~~d  216 (228)
T d1ueha_         155 ------------------LQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQD  216 (228)
T ss_dssp             ------------------CCGGGCCHHHHHTTSTTTTSCCCCEEEECSSCCSCTTSSCGGGTTCEEEECCSCGGGCCHHH
T ss_pred             ------------------CCHhHhhhhheecccccCCCCCCcEEEecCCceeccccchhcccceeEEECCCCCCcCCHHH
Confidence                              47789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 038167          271 LIWAILNFQRHH  282 (292)
Q Consensus       271 f~~al~~yq~r~  282 (292)
                      |.+||.+||+|+
T Consensus       217 l~~al~~y~~R~  228 (228)
T d1ueha_         217 FEGALNAFANRE  228 (228)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHccC
Confidence            999999999874
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure