Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 121
PTZ00110 545
PTZ00110, PTZ00110, helicase; Provisional
3e-31 COG0513 513
COG0513, SrmB, Superfamily II DNA and RNA helicase
8e-22 PRK04837 423
PRK04837, PRK04837, ATP-dependent RNA helicase Rhl
6e-20 PRK11192 434
PRK11192, PRK11192, ATP-dependent RNA helicase Srm
3e-19 PRK11776 460
PRK11776, PRK11776, ATP-dependent RNA helicase Dbp
8e-19 cd00079 131
cd00079, HELICc, Helicase superfamily c-terminal d
5e-18 PRK11634 629
PRK11634, PRK11634, ATP-dependent RNA helicase Dea
4e-17 pfam00271 78
pfam00271, Helicase_C, Helicase conserved C-termin
5e-17 PTZ00424 401
PTZ00424, PTZ00424, helicase 45; Provisional
2e-15 smart00490 82
smart00490, HELICc, helicase superfamily c-termina
3e-15 PRK10590 456
PRK10590, PRK10590, ATP-dependent RNA helicase Rhl
9e-15 PLN00206 518
PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel
2e-14 PRK01297 475
PRK01297, PRK01297, ATP-dependent RNA helicase Rhl
9e-14 PRK04537 572
PRK04537, PRK04537, ATP-dependent RNA helicase Rhl
3e-12 COG1111 542
COG1111, MPH1, ERCC4-like helicases [DNA replicati
7e-06 TIGR00614 470
TIGR00614, recQ_fam, ATP-dependent DNA helicase, R
1e-04 COG0514 590
COG0514, RecQ, Superfamily II DNA helicase [DNA re
2e-04 PRK13766 773
PRK13766, PRK13766, Hef nuclease; Provisional
0.004
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional
Back Hide alignment and domain information
Score = 115 bits (289), Expect = 3e-31
Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+ATD+A+RGLD+ DV+ VIN+ FP EDYVHRIGRTG+AG KG S+ FLT LA +
Sbjct: 432 IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARD 491
Query: 65 LVNVLREARQVVPDALLKFG-THVKKKESKLYGAHFR 100
LV VLREA+Q VP L K E + +G + R
Sbjct: 492 LVKVLREAKQPVPPELEKLSNERSNGTERRRWGGYGR 528
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 88.7 bits (220), Expect = 8e-22
Identities = 42/95 (44%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 4 QVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT-NHNKALA 62
VATD+AARGLDIPDV VINY PL EDYVHRIGRTG+AG+KGV+ F+T
Sbjct: 327 LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKL 386
Query: 63 GELVNVLR---EARQVVPDALLKFGTHVKKKESKL 94
+ L + ++P + +K L
Sbjct: 387 KRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGL 421
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Score = 83.1 bits (206), Expect = 6e-20
Identities = 31/46 (67%), Positives = 33/46 (71%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS 50
VATD+AARGL IP V V NY P EDYVHRIGRTG+AG G S
Sbjct: 310 VATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional
Back Show alignment and domain information
Score = 81.1 bits (201), Expect = 3e-19
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAG 63
VATD+AARG+DI DV VIN+ P + + Y+HRIGRTG+AG+KG + + H+ L G
Sbjct: 300 VATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLG 358
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional
Back Show alignment and domain information
Score = 80.2 bits (199), Expect = 8e-19
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53
VATD+AARGLDI +E VINY E +VHRIGRTG+AG KG++
Sbjct: 297 VATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Back Show alignment and domain information
Score = 73.4 bits (181), Expect = 5e-18
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53
VATD+ ARG+D+P+V VVINY P + Y+ RIGR G+AG+KG +
Sbjct: 83 VATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional
Back Show alignment and domain information
Score = 75.3 bits (185), Expect = 4e-17
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
+ATD+AARGLD+ + +V+NY P+ +E YVHRIGRTG+AG+ G + F+ N + L
Sbjct: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL--- 356
Query: 65 LVNVLREARQVVPDALL 81
L N+ R + +P+ L
Sbjct: 357 LRNIERTMKLTIPEVEL 373
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain
Back Show alignment and domain information
Score = 69.5 bits (171), Expect = 5e-17
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45
VATD+A RG+D+PDV +VINY P Y+ RIGR G+AG
Sbjct: 38 VATDVAGRGIDLPDVNLVINYDLPWNPASYIQRIGRAGRAG 78
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional
Back Show alignment and domain information
Score = 70.2 bits (172), Expect = 2e-15
Identities = 26/55 (47%), Positives = 40/55 (72%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59
+ TD+ ARG+D+ V +VINY P + E+Y+HRIGR+G+ G+KGV+ F+T +
Sbjct: 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain
Back Show alignment and domain information
Score = 64.9 bits (159), Expect = 3e-15
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45
VATD+A RGLD+P V++VI Y P + Y+ RIGR G+AG
Sbjct: 42 VATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional
Back Show alignment and domain information
Score = 68.7 bits (168), Expect = 9e-15
Identities = 29/44 (65%), Positives = 33/44 (75%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48
VATDIAARGLDI ++ V+NY P EDYVHRIGRTG+A G
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional
Back Show alignment and domain information
Score = 67.9 bits (166), Expect = 2e-14
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VAT + RG+D+ V VI + P T ++Y+H+IGR + G+KG + F+ ++ L E
Sbjct: 423 VATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPE 482
Query: 65 LVNVLREARQVVPDALLK---FGTHVKKKESKLYG 96
LV +L+ + +P L G+ K+K+ + YG
Sbjct: 483 LVALLKSSGAAIPRELANSRYLGSGRKRKKKRRYG 517
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Score = 65.7 bits (160), Expect = 9e-14
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54
VATD+A RG+ I + VIN++ P +DYVHRIGRTG+AG GVS F
Sbjct: 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFA 439
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Score = 61.5 bits (149), Expect = 3e-12
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48
VATD+AARGL I V+ V NY P EDYVHRIGRT + G++G
Sbjct: 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEG 355
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair]
Back Show alignment and domain information
Score = 43.1 bits (102), Expect = 7e-06
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE-DYVHRIGRTGQAGKKG 48
VAT + GLDIP+V++VI Y P+ +E + R GRTG+ +KG
Sbjct: 430 VATSVGEEGLDIPEVDLVIFYE-PVPSEIRSIQRKGRTGR-KRKG 472
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family
Back Show alignment and domain information
Score = 39.8 bits (93), Expect = 1e-04
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
VAT G++ PDV VI+YS P + E Y GR G+ G H F +
Sbjct: 281 VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPAD------ 334
Query: 65 LVNVLREARQVVPDALLKFGTHVKKKESKL 94
+N LR PD + T+ K +
Sbjct: 335 -INRLRRLLMEEPDG--QQRTYKLKLYEMM 361
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]
Back Show alignment and domain information
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK 47
VAT+ G+D PDV VI+Y P + E Y GR G+ G
Sbjct: 285 VATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional
Back Show alignment and domain information
Score = 35.2 bits (82), Expect = 0.004
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTE-DYVHRIGRTG 42
V+T +A GLDIP V++VI Y P+ +E + R GRTG
Sbjct: 428 VSTSVAEEGLDIPSVDLVIFYE-PVPSEIRSIQRKGRTG 465
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
121
KOG0336 629
consensus ATP-dependent RNA helicase [RNA processi
99.91 KOG0331 519
consensus ATP-dependent RNA helicase [RNA processi
99.91 PTZ00110 545
helicase; Provisional
99.89 KOG0335 482
consensus ATP-dependent RNA helicase [RNA processi
99.89 KOG0330 476
consensus ATP-dependent RNA helicase [RNA processi
99.89 PLN00206 518
DEAD-box ATP-dependent RNA helicase; Provisional
99.89 KOG0340 442
consensus ATP-dependent RNA helicase [RNA processi
99.88 KOG0333 673
consensus U5 snRNP-like RNA helicase subunit [RNA
99.87 KOG0328 400
consensus Predicted ATP-dependent RNA helicase FAL
99.86 COG0513 513
SrmB Superfamily II DNA and RNA helicases [DNA rep
99.86 KOG0344 593
consensus ATP-dependent RNA helicase [RNA processi
99.85 KOG0342 543
consensus ATP-dependent RNA helicase pitchoune [RN
99.85 KOG0341 610
consensus DEAD-box protein abstrakt [RNA processin
99.84 PRK04837 423
ATP-dependent RNA helicase RhlB; Provisional
99.83 KOG0326 459
consensus ATP-dependent RNA helicase [RNA processi
99.82 KOG0338 691
consensus ATP-dependent RNA helicase [RNA processi
99.81 PRK10590 456
ATP-dependent RNA helicase RhlE; Provisional
99.8 KOG0350 620
consensus DEAD-box ATP-dependent RNA helicase [RNA
99.8 KOG0345 567
consensus ATP-dependent RNA helicase [RNA processi
99.8 PRK11192 434
ATP-dependent RNA helicase SrmB; Provisional
99.79 PRK11776 460
ATP-dependent RNA helicase DbpA; Provisional
99.79 PRK01297 475
ATP-dependent RNA helicase RhlB; Provisional
99.78 PRK11634 629
ATP-dependent RNA helicase DeaD; Provisional
99.78 KOG0348 708
consensus ATP-dependent RNA helicase [RNA processi
99.78 PRK04537 572
ATP-dependent RNA helicase RhlB; Provisional
99.77 KOG0347 731
consensus RNA helicase [RNA processing and modific
99.77 PLN03137 1195
ATP-dependent DNA helicase; Q4-like; Provisional
99.77 KOG0332 477
consensus ATP-dependent RNA helicase [RNA processi
99.77 PTZ00424 401
helicase 45; Provisional
99.77 TIGR00614 470
recQ_fam ATP-dependent DNA helicase, RecQ family.
99.76 KOG0339 731
consensus ATP-dependent RNA helicase [RNA processi
99.75 KOG0334 997
consensus RNA helicase [RNA processing and modific
99.72 PRK11057 607
ATP-dependent DNA helicase RecQ; Provisional
99.71 KOG0327 397
consensus Translation initiation factor 4F, helica
99.71 KOG0346 569
consensus RNA helicase [RNA processing and modific
99.71 COG0514 590
RecQ Superfamily II DNA helicase [DNA replication,
99.71 KOG0343 758
consensus RNA Helicase [RNA processing and modific
99.7 TIGR03817 742
DECH_helic helicase/secretion neighborhood putativ
99.7 TIGR01389 591
recQ ATP-dependent DNA helicase RecQ. The ATP-depe
99.66 KOG4284 980
consensus DEAD box protein [Transcription]
99.61 KOG0329 387
consensus ATP-dependent RNA helicase [RNA processi
99.61 PRK12898 656
secA preprotein translocase subunit SecA; Reviewed
99.59 PF00271 78
Helicase_C: Helicase conserved C-terminal domain;
99.58 PRK09200 790
preprotein translocase subunit SecA; Reviewed
99.55 PRK04914 956
ATP-dependent helicase HepA; Validated
99.55 COG1111 542
MPH1 ERCC4-like helicases [DNA replication, recomb
99.49 PHA02653 675
RNA helicase NPH-II; Provisional
99.47 KOG0337 529
consensus ATP-dependent RNA helicase [RNA processi
99.47 PRK05298 652
excinuclease ABC subunit B; Provisional
99.47 KOG0351 941
consensus ATP-dependent DNA helicase [Replication,
99.45 TIGR00643 630
recG ATP-dependent DNA helicase RecG.
99.45 PRK10917 681
ATP-dependent DNA helicase RecG; Provisional
99.45 TIGR00580 926
mfd transcription-repair coupling factor (mfd). Al
99.45 PRK13767 876
ATP-dependent helicase; Provisional
99.43 TIGR00631 655
uvrb excinuclease ABC, B subunit. This family is b
99.42 TIGR03714 762
secA2 accessory Sec system translocase SecA2. Memb
99.4 PRK13766 773
Hef nuclease; Provisional
99.4 KOG0354 746
consensus DEAD-box like helicase [General function
99.39 KOG0349 725
consensus Putative DEAD-box RNA helicase DDX1 [RNA
99.38 TIGR00963 745
secA preprotein translocase, SecA subunit. The pro
99.37 cd00079 131
HELICc Helicase superfamily c-terminal domain; ass
99.34 PRK10689 1147
transcription-repair coupling factor; Provisional
99.33 PRK09751 1490
putative ATP-dependent helicase Lhr; Provisional
99.33 TIGR01970 819
DEAH_box_HrpB ATP-dependent helicase HrpB. This mo
99.31 PRK12906 796
secA preprotein translocase subunit SecA; Reviewed
99.31 smart00490 82
HELICc helicase superfamily c-terminal domain.
99.31 TIGR01587 358
cas3_core CRISPR-associated helicase Cas3. This mo
99.29 PRK11664 812
ATP-dependent RNA helicase HrpB; Provisional
99.26 KOG0353 695
consensus ATP-dependent DNA helicase [General func
99.25 PRK02362 737
ski2-like helicase; Provisional
99.24 PRK11131 1294
ATP-dependent RNA helicase HrpA; Provisional
99.22 KOG0352 641
consensus ATP-dependent DNA helicase [Replication,
99.21 PRK12900 1025
secA preprotein translocase subunit SecA; Reviewed
99.17 TIGR01967 1283
DEAH_box_HrpA ATP-dependent helicase HrpA. This mo
99.16 TIGR00603 732
rad25 DNA repair helicase rad25. All proteins in t
99.13 TIGR02621 844
cas3_GSU0051 CRISPR-associated helicase Cas3, Anae
99.13 PHA02558 501
uvsW UvsW helicase; Provisional
99.1 PRK00254 720
ski2-like helicase; Provisional
99.08 PRK01172 674
ski2-like helicase; Provisional
98.95 PRK05580 679
primosome assembly protein PriA; Validated
98.9 COG1201 814
Lhr Lhr-like helicases [General function predictio
98.9 TIGR00595 505
priA primosomal protein N'. All proteins in this f
98.8 PRK14701 1638
reverse gyrase; Provisional
98.63 PRK09694 878
helicase Cas3; Provisional
98.59 PRK09401 1176
reverse gyrase; Reviewed
98.53 PLN03142 1033
Probable chromatin-remodeling complex ATPase chain
98.47 KOG4150 1034
consensus Predicted ATP-dependent RNA helicase [RN
98.34 PRK11448 1123
hsdR type I restriction enzyme EcoKI subunit R; Pr
98.31 COG1197 1139
Mfd Transcription-repair coupling factor (superfam
98.22 COG1061 442
SSL2 DNA or RNA helicases of superfamily II [Trans
98.15 COG1200 677
RecG RecG-like helicase [DNA replication, recombin
98.1 COG1205 851
Distinct helicase family with a unique C-terminal
98.06 TIGR01054 1171
rgy reverse gyrase. Generally, these gyrases are e
97.91 COG1204 766
Superfamily II helicase [General function predicti
97.88 COG0556 663
UvrB Helicase subunit of the DNA excision repair c
97.87 KOG0947 1248
consensus Cytoplasmic exosomal RNA helicase SKI2,
97.79 KOG0948 1041
consensus Nuclear exosomal RNA helicase MTR4, DEAD
97.73 PRK12904 830
preprotein translocase subunit SecA; Reviewed
97.71 KOG0950 1008
consensus DNA polymerase theta/eta, DEAD-box super
97.7 KOG0953 700
consensus Mitochondrial RNA helicase SUV3, DEAD-bo
97.65 PRK12903 925
secA preprotein translocase subunit SecA; Reviewed
97.61 COG1203 733
CRISPR-associated helicase Cas3 [Defense mechanism
97.57 COG4098 441
comFA Superfamily II DNA/RNA helicase required for
97.5 COG1198 730
PriA Primosomal protein N' (replication factor Y)
97.49 COG1202 830
Superfamily II helicase, archaea-specific [General
97.26 PRK13104 896
secA preprotein translocase subunit SecA; Reviewed
97.25 PRK13107 908
preprotein translocase subunit SecA; Reviewed
97.2 COG1643 845
HrpA HrpA-like helicases [DNA replication, recombi
97.15 PRK12899 970
secA preprotein translocase subunit SecA; Reviewed
97.08 KOG0926 1172
consensus DEAH-box RNA helicase [RNA processing an
97.01 KOG0923 902
consensus mRNA splicing factor ATP-dependent RNA h
96.95 KOG0390 776
consensus DNA repair protein, SNF2 family [Replica
96.93 PRK12326 764
preprotein translocase subunit SecA; Reviewed
96.86 KOG0924 1042
consensus mRNA splicing factor ATP-dependent RNA h
96.66 KOG0920 924
consensus ATP-dependent RNA helicase A [RNA proces
96.62 KOG0922 674
consensus DEAH-box RNA helicase [RNA processing an
96.58 PRK12901 1112
secA preprotein translocase subunit SecA; Reviewed
96.44 KOG0387 923
consensus Transcription-coupled repair protein CSB
96.33 COG4581 1041
Superfamily II RNA helicase [DNA replication, reco
96.29 KOG0952 1230
consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup
96.11 KOG0949 1330
consensus Predicted helicase, DEAD-box superfamily
96.07 PF13871 278
Helicase_C_4: Helicase_C-like
95.88 PRK13103 913
secA preprotein translocase subunit SecA; Reviewed
95.85 KOG0951 1674
consensus RNA helicase BRR2, DEAD-box superfamily
95.47 COG0553 866
HepA Superfamily II DNA/RNA helicases, SNF2 family
95.46 TIGR00348 667
hsdR type I site-specific deoxyribonuclease, HsdR
95.36 KOG0925 699
consensus mRNA splicing factor ATP-dependent RNA h
94.99 COG4889 1518
Predicted helicase [General function prediction on
94.94 TIGR01407 850
dinG_rel DnaQ family exonuclease/DinG family helic
94.74 PF13307 167
Helicase_C_2: Helicase C-terminal domain; PDB: 4A1
94.72 KOG0384 1373
consensus Chromodomain-helicase DNA-binding protei
94.61 TIGR03158 357
cas3_cyano CRISPR-associated helicase, Cyano-type.
94.51 TIGR02562 1110
cas3_yersinia CRISPR-associated helicase Cas3. The
94.5 KOG0385 971
consensus Chromatin remodeling complex WSTF-ISWI,
94.23 smart00492 141
HELICc3 helicase superfamily c-terminal domain.
94.17 smart00491 142
HELICc2 helicase superfamily c-terminal domain.
93.94 KOG0701 1606
consensus dsRNA-specific nuclease Dicer and relate
93.48 KOG1015 1567
consensus Transcription regulator XNP/ATRX, DEAD-b
93.22 TIGR00596 814
rad1 DNA repair protein (rad1). This family is bas
92.94 COG1199 654
DinG Rad3-related DNA helicases [Transcription / D
92.35 COG4096 875
HsdR Type I site-specific restriction-modification
91.91 KOG0389 941
consensus SNF2 family DNA-dependent ATPase [Chroma
91.67 PRK11747 697
dinG ATP-dependent DNA helicase DinG; Provisional
91.47 PF10593 239
Z1: Z1 domain; InterPro: IPR018310 This entry repr
90.83 CHL00122 870
secA preprotein translocase subunit SecA; Validate
90.57 KOG0391 1958
consensus SNF2 family DNA-dependent ATPase [Genera
90.06 KOG0388 1185
consensus SNF2 family DNA-dependent ATPase [Replic
89.65 PRK14873 665
primosome assembly protein PriA; Provisional
88.61 KOG1000 689
consensus Chromatin remodeling protein HARP/SMARCA
88.22 KOG0392 1549
consensus SNF2 family DNA-dependent ATPase domain-
88.12 KOG0386 1157
consensus Chromatin remodeling complex SWI/SNF, co
87.46 PRK08074 928
bifunctional ATP-dependent DNA helicase/DNA polyme
86.79 COG1110 1187
Reverse gyrase [DNA replication, recombination, an
86.52 TIGR00604 705
rad3 DNA repair helicase (rad3). All proteins in t
84.57 PRK07246 820
bifunctional ATP-dependent DNA helicase/DNA polyme
83.98 PRK09401 1176
reverse gyrase; Reviewed
82.82
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Hide alignment and domain information
Probab=99.91 E-value=1.1e-24 Score=169.82 Aligned_cols=97 Identities=48% Similarity=0.813 Sum_probs=90.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++||||||+++||||++++.||+|||+|.+++.|+||+||+||+|+.|.+++|++-+|..+++.+.+.+..+.|++|+.|
T Consensus 516 vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 516 VRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred eEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhhhhhhcc
Q 038184 81 LKFGTHVKKKESKLYGA 97 (121)
Q Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (121)
..+++..+-+.+++-+.
T Consensus 596 ~~mAeryk~~q~kR~~e 612 (629)
T KOG0336|consen 596 VRMAERYKLKQSKRDGE 612 (629)
T ss_pred HHHHHHHHhhhcccccc
Confidence 99988877666555443
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.91 E-value=8.6e-25 Score=174.87 Aligned_cols=91 Identities=57% Similarity=0.878 Sum_probs=85.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+||||||+++|||||++|++|||||+|.++++|+||+|||||+|+.|.+++|++..+......+.+.+.+..+.+|+.+
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l 471 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDL 471 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhh
Q 038184 81 LKFGTHVKKKE 91 (121)
Q Consensus 81 ~~~~~~~~~~~ 91 (121)
..++.......
T Consensus 472 ~~~~~~~~~~~ 482 (519)
T KOG0331|consen 472 LEYARVSGSGG 482 (519)
T ss_pred HHHHhhcccCC
Confidence 88876655444
>PTZ00110 helicase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=3.1e-23 Score=168.39 Aligned_cols=99 Identities=51% Similarity=0.753 Sum_probs=88.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||++++||||+++|++|||||+|.++++|+||+|||||+|+.|.+++|+++.+...+..+.+.++...+.+|++|
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l 507 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPEL 507 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhh-hhhhhhcccc
Q 038184 81 LKFGTHVKK-KESKLYGAHF 99 (121)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~ 99 (121)
.++....+. .+...++.++
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~ 527 (545)
T PTZ00110 508 EKLSNERSNGTERRRWGGYG 527 (545)
T ss_pred HHHHHHhcCCcccccccCCC
Confidence 998766552 2333444443
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.89 E-value=1.9e-23 Score=165.40 Aligned_cols=82 Identities=50% Similarity=0.810 Sum_probs=79.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+.+||||++++||||+++|.||||||+|.+..+|+||||||||+|+.|.+++|++..+....+.|.+.+.++.+.+|+||
T Consensus 388 ~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl 467 (482)
T KOG0335|consen 388 APVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWL 467 (482)
T ss_pred cceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 038184 81 LK 82 (121)
Q Consensus 81 ~~ 82 (121)
..
T Consensus 468 ~~ 469 (482)
T KOG0335|consen 468 SE 469 (482)
T ss_pred Hh
Confidence 87
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.89 E-value=2e-23 Score=161.31 Aligned_cols=75 Identities=39% Similarity=0.696 Sum_probs=71.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhccc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQV 75 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~ 75 (121)
.+||||||+++||||+|+|++|||||+|.+..+|+||+||+||+|++|.+|++++.-|...+.+|+..+......
T Consensus 351 r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 351 RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 369999999999999999999999999999999999999999999999999999999999999999888877655
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Back Show alignment and domain information
Probab=99.89 E-value=5.3e-23 Score=166.09 Aligned_cols=84 Identities=32% Similarity=0.583 Sum_probs=80.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+|||||.|..|.+++|+++++...+..+.+.++..++.+|+++
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l 498 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPREL 498 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 038184 81 LKFG 84 (121)
Q Consensus 81 ~~~~ 84 (121)
.+..
T Consensus 499 ~~~~ 502 (518)
T PLN00206 499 ANSR 502 (518)
T ss_pred HhCh
Confidence 8755
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.88 E-value=8.6e-23 Score=156.47 Aligned_cols=77 Identities=36% Similarity=0.639 Sum_probs=71.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccCh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVP 77 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~ 77 (121)
++|||||||++||||||.|++|||||+|+++.+|+||+||++|+|+.|.+++++++.|...+..|++.......+.+
T Consensus 305 ~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 305 ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999888776555443
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Back Show alignment and domain information
Probab=99.87 E-value=1.3e-22 Score=161.44 Aligned_cols=82 Identities=48% Similarity=0.764 Sum_probs=73.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH-hcccChHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE-ARQVVPDAL 80 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l 80 (121)
.||||||+++||||||+|.+|||||++.++++|+||||||||+|+.|.+++|+++.+...+..|...+.+ .....|..+
T Consensus 569 dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~El 648 (673)
T KOG0333|consen 569 DILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPEL 648 (673)
T ss_pred CEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhh
Confidence 5999999999999999999999999999999999999999999999999999999998888888777664 455567777
Q ss_pred Hhh
Q 038184 81 LKF 83 (121)
Q Consensus 81 ~~~ 83 (121)
.+.
T Consensus 649 a~h 651 (673)
T KOG0333|consen 649 ANH 651 (673)
T ss_pred ccC
Confidence 554
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.86 E-value=3.9e-22 Score=149.66 Aligned_cols=80 Identities=33% Similarity=0.608 Sum_probs=76.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+||++||+.+||+|+|.|++|||||+|.+.+.|+||+||.||.|++|++|.|+...|....+.+++.++....++|..+
T Consensus 317 SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 317 SRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred ceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999888764
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.86 E-value=4e-22 Score=160.96 Aligned_cols=72 Identities=54% Similarity=0.856 Sum_probs=67.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~ 72 (121)
++||||||+++|||||++|++|||||+|.++++|+||+|||||+|+.|.+++|+++. |...+..++..+...
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999999999999999999999999999986 888888888887554
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.85 E-value=1.3e-21 Score=156.80 Aligned_cols=85 Identities=34% Similarity=0.697 Sum_probs=81.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
|+||+||++++||+|+.++++|||||+|.+..+|+||+||+||+|+.|.|++||+..+...++.+.+.+...+.++|+++
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hhhhh
Q 038184 81 LKFGT 85 (121)
Q Consensus 81 ~~~~~ 85 (121)
-.+..
T Consensus 519 m~~~k 523 (593)
T KOG0344|consen 519 MGIKK 523 (593)
T ss_pred Hhhhh
Confidence 76554
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Back Show alignment and domain information
Probab=99.85 E-value=5.7e-22 Score=156.51 Aligned_cols=66 Identities=42% Similarity=0.714 Sum_probs=63.5
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
|||||||++||+|+|+|++||+||+|.++++|+||+|||||.|..|.+++++.|.+...++.+.+.
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKKL 448 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999999999999999888743
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Back Show alignment and domain information
Probab=99.84 E-value=1.4e-21 Score=151.88 Aligned_cols=88 Identities=42% Similarity=0.776 Sum_probs=80.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHhcccChHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.||||||+++.|+|+|++.||||||+|..+++|+||+|||||.|+.|.+.+|++.. +...+-.+...+.+.++.+|+.|
T Consensus 473 DVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L 552 (610)
T KOG0341|consen 473 DVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVL 552 (610)
T ss_pred ceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHH
Confidence 48999999999999999999999999999999999999999999999999999865 45666788888999999999999
Q ss_pred Hhhhhhhhh
Q 038184 81 LKFGTHVKK 89 (121)
Q Consensus 81 ~~~~~~~~~ 89 (121)
..+.-.++.
T Consensus 553 ~~L~~~~E~ 561 (610)
T KOG0341|consen 553 AELAGPMEE 561 (610)
T ss_pred HHhCCCccc
Confidence 988776664
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Probab=99.83 E-value=3.4e-21 Score=151.80 Aligned_cols=73 Identities=42% Similarity=0.621 Sum_probs=67.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREAR 73 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 73 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+||+||.|+.|.+++|+++.+...+..+++.+....
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999888888877665443
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.82 E-value=8.5e-21 Score=144.40 Aligned_cols=80 Identities=34% Similarity=0.576 Sum_probs=76.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
|+.|||||.+.||||++.|+.|||||+|+++++|+||+||+||+|.-|.||.+++-+|...+..+++.+......+|+.+
T Consensus 373 crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 373 CRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred cceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998888665
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.81 E-value=5.4e-20 Score=146.43 Aligned_cols=68 Identities=43% Similarity=0.761 Sum_probs=65.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
|.||||||+++|||||+.|..||||++|.+.+.|+||+|||+|+|+.|.+++|+...+...++.+.+.
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 67999999999999999999999999999999999999999999999999999999999998888666
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Back Show alignment and domain information
Probab=99.80 E-value=8.1e-20 Score=145.45 Aligned_cols=72 Identities=43% Similarity=0.716 Sum_probs=67.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+|||||+|..|.+++|+...|...++.++..+...
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999999999999999999999999999988888888776644
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.80 E-value=7.3e-20 Score=145.17 Aligned_cols=71 Identities=38% Similarity=0.653 Sum_probs=66.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
||||||||+++||+|+-+|+.|||||+|.+..+|+||+|||+|+|+.|.+++++...+...+.++.+....
T Consensus 484 i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 484 INVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred ceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 68999999999999999999999999999999999999999999999999999999999888887666544
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.80 E-value=6.5e-20 Score=144.57 Aligned_cols=63 Identities=40% Similarity=0.709 Sum_probs=58.8
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
+|+||||++||||||+|++||+||+|.+++.|+||+|||||+|+.|.+++|+.+++...++.+
T Consensus 310 vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 310 VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFL 372 (567)
T ss_pred eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999776655443
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=1.8e-19 Score=142.25 Aligned_cols=71 Identities=45% Similarity=0.816 Sum_probs=66.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||+|+|+|++|||||+|.+...|+||+||+||+|..|.+++|++..|...+.+++..+..
T Consensus 296 ~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 296 VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999888888876654
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Back Show alignment and domain information
Probab=99.79 E-value=2.1e-19 Score=142.95 Aligned_cols=71 Identities=44% Similarity=0.631 Sum_probs=66.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||+|+|++++|||||+|.++.+|+||+|||||+|+.|.+++|+++.+...+..++..+..
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999999999988888888776554
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Probab=99.78 E-value=3.2e-19 Score=142.55 Aligned_cols=72 Identities=42% Similarity=0.692 Sum_probs=67.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
++|||||+++++|||+++|++||+||+|.++.+|+||+||+||.|+.|.+++|+++.|...+..+++.+...
T Consensus 386 ~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 386 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999999999999999999999999999999999998888888888877654
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Back Show alignment and domain information
Probab=99.78 E-value=2.2e-19 Score=148.07 Aligned_cols=71 Identities=41% Similarity=0.789 Sum_probs=65.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||+|+.|.+++|+.+.+...++.+++.++.
T Consensus 296 ~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~ 366 (629)
T PRK11634 296 LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366 (629)
T ss_pred CCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999999999999999999999999999999888888887766544
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.78 E-value=2.7e-19 Score=143.07 Aligned_cols=68 Identities=41% Similarity=0.690 Sum_probs=63.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
||+||||++||||+|+|.+||+||.|.++.+|+||+|||+|.|.+|.+++|+.|.+...+..+.....
T Consensus 500 VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999987777655433
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=3.8e-19 Score=145.30 Aligned_cols=71 Identities=39% Similarity=0.653 Sum_probs=66.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||++++||||+++|++|||||+|.++++|+||+||+||.|..|.+++|+.+.+...+..++..+..
T Consensus 308 ~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 308 LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999999999999999999999999999888888888776554
>KOG0347 consensus RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.77 E-value=2.5e-19 Score=143.54 Aligned_cols=71 Identities=44% Similarity=0.648 Sum_probs=67.9
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREAR 73 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~ 73 (121)
|||||||++||||||+|+|||||.+|.+.+-|+||.|||+|++..|..++++.|.+...+.+|++.++...
T Consensus 516 VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 516 VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999988888643
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=5.2e-19 Score=151.43 Aligned_cols=66 Identities=24% Similarity=0.433 Sum_probs=61.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||++++||||+|+|++|||||+|.+++.|+||+|||||.|..|.+++|++..|....+.+.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999988877666664
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.77 E-value=5.9e-19 Score=136.29 Aligned_cols=79 Identities=34% Similarity=0.685 Sum_probs=66.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------ChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHHHHHhcc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNVLREARQ 74 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~~~~~~~ 74 (121)
+|||+|+|++||||++.|+.|||||+|. ++++|+||+|||||+|+.|.++.|+...+ ...+.+|++.+.....
T Consensus 382 kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~ 461 (477)
T KOG0332|consen 382 KVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIK 461 (477)
T ss_pred eEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcce
Confidence 6999999999999999999999999997 48999999999999999999999997554 5667788888855433
Q ss_pred -cChHHH
Q 038184 75 -VVPDAL 80 (121)
Q Consensus 75 -~~~~~l 80 (121)
..|+.+
T Consensus 462 ~~~~~d~ 468 (477)
T KOG0332|consen 462 RLDPDDL 468 (477)
T ss_pred ecCCccH
Confidence 344444
>PTZ00424 helicase 45; Provisional
Back Show alignment and domain information
Probab=99.77 E-value=4.2e-19 Score=138.25 Aligned_cols=78 Identities=36% Similarity=0.659 Sum_probs=70.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPD 78 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (121)
++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++.+...+..+++.+....+..+.
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 579999999999999999999999999999999999999999999999999999999988888887777765555543
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family
Back Show alignment and domain information
Probab=99.76 E-value=6.1e-19 Score=140.96 Aligned_cols=103 Identities=24% Similarity=0.328 Sum_probs=77.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcc-cC-hH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQ-VV-PD 78 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~-~~-~~ 78 (121)
++|||||++++||||+|+|++||||++|.+++.|+||+|||||.|..|.+++|+++.|...++.+........+ .. +.
T Consensus 277 ~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 356 (470)
T TIGR00614 277 IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYKLK 356 (470)
T ss_pred CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999988877776443221111 00 11
Q ss_pred HHHh--hhhhhhhhhhhhhcccccccc
Q 038184 79 ALLK--FGTHVKKKESKLYGAHFREIS 103 (121)
Q Consensus 79 ~l~~--~~~~~~~~~~~~~~~~~~~~~ 103 (121)
.+.. .......+....+..+|++..
T Consensus 357 ~~~~~~~~~~~~~crr~~l~~~f~~~~ 383 (470)
T TIGR00614 357 LYEMMEYCLNSSTCRRLILLSHFGEKQ 383 (470)
T ss_pred HHHHHHHHhccccCHHHHHHHHcCCcc
Confidence 1111 122334566667777787753
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.75 E-value=2.4e-18 Score=137.14 Aligned_cols=96 Identities=45% Similarity=0.698 Sum_probs=88.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+.|||+||+++||+||+++..|||||+-++++.|.||+||+||+|..|++++++++.|...+..|...|..++|++|+.|
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l 598 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDEL 598 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhhhhhhhhhhhc
Q 038184 81 LKFGTHVKKKESKLYG 96 (121)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (121)
.+++-.+.--++.+.+
T Consensus 599 ~dlamk~s~fr~~r~~ 614 (731)
T KOG0339|consen 599 MDLAMKSSWFRSSRFG 614 (731)
T ss_pred HHHHhhhhhhhhhhcc
Confidence 9888777655544433
>KOG0334 consensus RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.72 E-value=1e-17 Score=141.11 Aligned_cols=89 Identities=44% Similarity=0.742 Sum_probs=82.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
+++||||++++||||+.++.+|||||+|...++|+||+|||||+|++|.|++|+++.+....-.|.+.+...++.+|..+
T Consensus 664 ~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 664 VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhhhhhhhh
Q 038184 81 LKFGTHVKK 89 (121)
Q Consensus 81 ~~~~~~~~~ 89 (121)
+.+......
T Consensus 744 ~~l~~~f~~ 752 (997)
T KOG0334|consen 744 QALSERFKA 752 (997)
T ss_pred HHHHHHHHh
Confidence 766655433
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Back Show alignment and domain information
Probab=99.71 E-value=1.1e-17 Score=137.44 Aligned_cols=66 Identities=24% Similarity=0.426 Sum_probs=61.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||++++||||+|+|++|||||+|.+.++|+||+|||||.|..|.+++|+++.|...++.+.
T Consensus 287 ~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 287 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999998876665553
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.71 E-value=6.7e-18 Score=130.26 Aligned_cols=80 Identities=33% Similarity=0.653 Sum_probs=74.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
.+|||+|+.++||+|+..+..|+|||+|...++|+||+||+||.|++|.++.|++..+...++.+++++.....++|...
T Consensus 314 srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 314 SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccch
Confidence 37999999999999999999999999999999999999999999999999999999999999999988887777777654
>KOG0346 consensus RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.71 E-value=9.4e-18 Score=131.80 Aligned_cols=88 Identities=31% Similarity=0.535 Sum_probs=74.6
Q ss_pred ccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHh-cccChHHHHhhhhhhh
Q 038184 10 AARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREA-RQVVPDALLKFGTHVK 88 (121)
Q Consensus 10 ~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~ 88 (121)
.+||||+.+|.+|+|||+|.++.+|+||+|||+|+++.|.+++|+.|.+......++..++.. .+.=+..++.+...++
T Consensus 363 VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~f~~e 442 (569)
T KOG0346|consen 363 VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQFRME 442 (569)
T ss_pred hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCccccccccchHH
Confidence 479999999999999999999999999999999999999999999999988777888777775 3333446777777777
Q ss_pred hhhhhhhcc
Q 038184 89 KKESKLYGA 97 (121)
Q Consensus 89 ~~~~~~~~~ 97 (121)
+.++++|..
T Consensus 443 evesfryR~ 451 (569)
T KOG0346|consen 443 EVESFRYRA 451 (569)
T ss_pred HHHHHHHHH
Confidence 777776654
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=99.71 E-value=2.7e-17 Score=133.87 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=64.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVL 69 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~ 69 (121)
++|+|||.+++||||.|+|.+|||||+|.++++|+|.+|||||.|....+++++.+.|..+.+.+.+..
T Consensus 281 ~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 281 IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 479999999999999999999999999999999999999999999999999999999988877775553
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.70 E-value=1.5e-17 Score=133.52 Aligned_cols=66 Identities=38% Similarity=0.609 Sum_probs=60.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc-HHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN-KALAGELVNV 68 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~-~~~~~~i~~~ 68 (121)
||+|||+++||||+|.|++||+||.|.++++|+||+||++|.+..|.++++++|.+ ..++..|++.
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred EEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999988 5555555443
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase
Back Show alignment and domain information
Probab=99.70 E-value=1.8e-17 Score=138.80 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=61.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc--CccHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT--NHNKALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~--~~~~~~~~~i~~~~~ 70 (121)
+++||||+++++|||++++++|||||+|.++.+|+||+|||||.|+.|.++++.+ +.|...+..++..+.
T Consensus 330 i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 330 LLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred ceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 5799999999999999999999999999999999999999999999999999986 445555665555544
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
>TIGR01389 recQ ATP-dependent DNA helicase RecQ
Back Show alignment and domain information
Probab=99.66 E-value=1.2e-16 Score=130.84 Aligned_cols=66 Identities=29% Similarity=0.460 Sum_probs=60.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
++|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..+.+++++++.+....+.+.
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999988876665554
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
>KOG4284 consensus DEAD box protein [Transcription]
Back Show alignment and domain information
Probab=99.61 E-value=7.9e-16 Score=125.66 Aligned_cols=65 Identities=34% Similarity=0.599 Sum_probs=58.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i 65 (121)
++|||+||..+||||-++|++|||.|.|.+-++|+||||||||+|..|.+++|+... +...+..+
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 589999999999999999999999999999999999999999999999999999654 33444443
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.61 E-value=1.4e-16 Score=118.65 Aligned_cols=76 Identities=32% Similarity=0.657 Sum_probs=66.5
Q ss_pred EEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcC-ccHHHHHHHHHHHHHhcccChHH
Q 038184 4 QVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTN-HNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 4 LV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~-~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
||||++++||+|+..++.|+|||+|.++++|+||+|||||.|..|.+|+|++. ++...+..+.+.......++|+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 79999999999999999999999999999999999999999999999999975 45566677766666666666665
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=99.59 E-value=2.5e-15 Score=124.01 Aligned_cols=60 Identities=30% Similarity=0.346 Sum_probs=55.7
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+||||||+++||+||+ +|. +|||||+|.+...|.||+|||||.|..|.+++|++.+|.-+
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l~ 590 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHHH
Confidence 5999999999999999 676 99999999999999999999999999999999999877544
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins
Back Show alignment and domain information
Probab=99.58 E-value=1.2e-15 Score=93.84 Aligned_cols=44 Identities=45% Similarity=0.852 Sum_probs=42.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
+|||||+++++|+|+|.+++||+|++|+++..|.|++||++|.|
T Consensus 35 ~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 35 RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 69999999999999999999999999999999999999999986
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
>PRK09200 preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=99.55 E-value=8.1e-15 Score=123.07 Aligned_cols=60 Identities=32% Similarity=0.426 Sum_probs=56.0
Q ss_pred cEEEEeccccccCCC---CCcc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDI---PDVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi---~~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+|| ++|. +||+||+|.+...|+||+|||||.|..|.+++|++.+|.-+
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l~ 545 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLL 545 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHHH
Confidence 699999999999999 6998 99999999999999999999999999999999999766533
>PRK04914 ATP-dependent helicase HepA; Validated
Back Show alignment and domain information
Probab=99.55 E-value=9.9e-15 Score=124.70 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=58.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++|||||+++++|+|++.+++|||||+|+++..|.||+||++|.|+++.+..++...+....+.|...+..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 46999999999999999999999999999999999999999999999887776654443344444444443
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=99.49 E-value=7.2e-14 Score=111.40 Aligned_cols=60 Identities=33% Similarity=0.500 Sum_probs=54.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
.||||||+++++|||||+|++||.|++-.|...++||.|||||. +.|.++.+++.+....
T Consensus 426 ~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrde 485 (542)
T COG1111 426 YNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRDE 485 (542)
T ss_pred ceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchHH
Confidence 48999999999999999999999999999999999999999998 8899999998764433
>PHA02653 RNA helicase NPH-II; Provisional
Back Show alignment and domain information
Probab=99.47 E-value=4.3e-14 Score=117.41 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=53.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC---CCC---------ChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS---FPL---------TTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d---~P~---------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
.+||||||+++|||||++|.+||+++ .|. +..+|+||+|||||. +.|.++.|+++.+..
T Consensus 447 ~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 447 PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 37999999999999999999999999 675 788999999999999 789999999876643
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=99.47 E-value=2.1e-14 Score=112.55 Aligned_cols=69 Identities=39% Similarity=0.656 Sum_probs=62.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++||.||+++||+|+|-.+.|||||+|.+..-|+||+||++|+|+.|++++++.+.+....-.|...+.
T Consensus 313 ~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 313 SILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred ceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 689999999999999999999999999999999999999999999999999999888777666655443
>PRK05298 excinuclease ABC subunit B; Provisional
Back Show alignment and domain information
Probab=99.47 E-value=1.3e-13 Score=114.33 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=69.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcC---------ccHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTN---------HNKALAGELV 66 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~---------~~~~~~~~i~ 66 (121)
++|||||+++++|+|+|++++||++|. |.+..+|+||+|||||. ..|.+++|++. .+....++++
T Consensus 497 i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~ 575 (652)
T PRK05298 497 FDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQ 575 (652)
T ss_pred ceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999985 78999999999999997 78999999984 4566677777
Q ss_pred HHHHHhcccChHHHHh
Q 038184 67 NVLREARQVVPDALLK 82 (121)
Q Consensus 67 ~~~~~~~~~~~~~l~~ 82 (121)
..+......+|....+
T Consensus 576 ~~~~~~~~~~~~~~~~ 591 (652)
T PRK05298 576 IAYNEEHGITPKTIKK 591 (652)
T ss_pred HHhhhccCCCChhHHH
Confidence 7788888888866643
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Back Show alignment and domain information
Probab=99.45 E-value=1e-13 Score=118.19 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=78.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH---hcc---
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE---ARQ--- 74 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~---~~~--- 74 (121)
++|+|||=+++||||.|+|..||||.+|.+++.|+|.+|||||.|....+++|++..+...++.+...-.. ..+
T Consensus 536 ~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~ 615 (941)
T KOG0351|consen 536 IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRLSGVKKFTR 615 (941)
T ss_pred CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHccccccchhhccc
Confidence 58999999999999999999999999999999999999999999999999999998887777666443311 111
Q ss_pred -cChHHHHhhhhhhhhhhhhhhccccccc
Q 038184 75 -VVPDALLKFGTHVKKKESKLYGAHFREI 102 (121)
Q Consensus 75 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (121)
.--.....+++....+.......+|++.
T Consensus 616 ~~~l~~~~~yCen~t~crr~~~l~~fge~ 644 (941)
T KOG0351|consen 616 LLELVQVVTYCENETDCRRKQILEYFGEE 644 (941)
T ss_pred hhhHHHHHHhhcCccchhHHHHHHhcccc
Confidence 1112233555555556666666777665
>TIGR00643 recG ATP-dependent DNA helicase RecG
Back Show alignment and domain information
Probab=99.45 E-value=2.1e-13 Score=112.72 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=51.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|||||+++++|+|+|++++||+|+.|. ....|.||+||+||.|..|.+++++.
T Consensus 509 ~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 509 VDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 47999999999999999999999999997 57788889999999999999999993
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Back Show alignment and domain information
Probab=99.45 E-value=2.4e-13 Score=113.32 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|||||+++++|+|+|++++||+|+.|. ....|.||+||+||.|..|.|++++.
T Consensus 532 ~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 532 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 47999999999999999999999999997 46788889999999999999999995
>TIGR00580 mfd transcription-repair coupling factor (mfd)
Back Show alignment and domain information
Probab=99.45 E-value=1.5e-13 Score=117.51 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=52.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|++++||++++|. +..+|.||+||+||.|+.|.|++++.+.
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 47999999999999999999999999976 5789999999999999999999999643
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
>PRK13767 ATP-dependent helicase; Provisional
Back Show alignment and domain information
Probab=99.43 E-value=4e-13 Score=114.55 Aligned_cols=45 Identities=24% Similarity=0.427 Sum_probs=43.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
++|||||+++++|||+|+|++||+|+.|.++.+|+||+||+||.+
T Consensus 341 i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 341 LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 579999999999999999999999999999999999999999864
>TIGR00631 uvrb excinuclease ABC, B subunit
Back Show alignment and domain information
Probab=99.42 E-value=4.3e-13 Score=111.32 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=59.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC-----CCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNV 68 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d-----~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~ 68 (121)
+.|||||+++++|+|+|++++|+++| .|.+..+|+||+|||||. ..|.+++|++..+..+.+.+.+.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 46899999999999999999999999 899999999999999998 68999999998776665555554
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
>TIGR03714 secA2 accessory Sec system translocase SecA2
Back Show alignment and domain information
Probab=99.40 E-value=3.6e-13 Score=112.67 Aligned_cols=59 Identities=29% Similarity=0.444 Sum_probs=54.4
Q ss_pred cEEEEeccccccCCCC---------CccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIP---------DVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---------~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+||+ ++.+|++|++|....+ .||+|||||.|..|.+++|++.+|.-+
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l~ 541 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDLI 541 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhhh
Confidence 5899999999999999 9999999999998777 999999999999999999999776533
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
>PRK13766 Hef nuclease; Provisional
Back Show alignment and domain information
Probab=99.40 E-value=1.5e-12 Score=109.43 Aligned_cols=57 Identities=32% Similarity=0.493 Sum_probs=51.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+. |.++.++....
T Consensus 424 ~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 424 FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 4799999999999999999999999999999999999999999865 77777776433
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Back Show alignment and domain information
Probab=99.39 E-value=7.7e-13 Score=109.81 Aligned_cols=62 Identities=29% Similarity=0.414 Sum_probs=53.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~ 64 (121)
+||||||+++++||||+.|++||.||.-.++...+||.|| ||+ +.|.++++++..+....+.
T Consensus 475 ~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 475 INVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFER 536 (746)
T ss_pred ccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHH
Confidence 5899999999999999999999999999999999999999 899 5677777777555444433
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Back Show alignment and domain information
Probab=99.38 E-value=2.6e-13 Score=107.36 Aligned_cols=59 Identities=37% Similarity=0.683 Sum_probs=54.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+++|||||+++|||||..+.++||.-+|.+-..|+||+||+||+.+-|.+|+++.....
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~e 617 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPE 617 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccch
Confidence 47899999999999999999999999999999999999999999999999999864433
>TIGR00963 secA preprotein translocase, SecA subunit
Back Show alignment and domain information
Probab=99.37 E-value=1.3e-12 Score=109.06 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=55.5
Q ss_pred cEEEEeccccccCCCCC-------ccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHH
Q 038184 2 YLQVATDIAARGLDIPD-------VEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKAL 61 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~-------v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~ 61 (121)
+|+|||++++||+||+. .-|||+|++|.+...|.||+|||||.|..|.+..|++.+|.-+
T Consensus 455 ~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 455 AVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred eEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 69999999999999998 4499999999999999999999999999999999999776544
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Back Show alignment and domain information
Probab=99.34 E-value=1.2e-12 Score=86.39 Aligned_cols=53 Identities=49% Similarity=0.923 Sum_probs=49.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
.+||++|.++++|+|+|.+++||.++.|++...|.|++||++|.|+.|.++.+
T Consensus 79 ~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 79 IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 36899999999999999999999999999999999999999999988877653
>PRK10689 transcription-repair coupling factor; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=1.3e-12 Score=113.76 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=47.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC-CChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP-LTTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P-~~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
++|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.|+.|.+++++.+
T Consensus 862 ~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 4799999999999999999999943332 2445799999999999999999998854
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=1.8e-12 Score=114.51 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=47.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeC-CCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQA-GKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~-g~~g~~i~~~~ 55 (121)
+++||||+.+++|||+++|++||||+.|.++.+|+||+||+||. |..+.++.+..
T Consensus 328 LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 328 LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 57999999999999999999999999999999999999999986 33344454433
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB
Back Show alignment and domain information
Probab=99.31 E-value=1.2e-12 Score=110.88 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=51.1
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCCh------------------hhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTT------------------EDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------------------~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+||||||++++||||++|++||++++|... .+|.||+|||||. +.|.++.++++.+.
T Consensus 264 kVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 264 KVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred EEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 699999999999999999999999999742 3589999999999 89999999986543
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=99.31 E-value=2.1e-12 Score=108.48 Aligned_cols=58 Identities=31% Similarity=0.445 Sum_probs=54.7
Q ss_pred cEEEEeccccccCCC---CCcc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDI---PDVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi---~~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|+|||++++||.|| ++|. |||++++|.+...|.|+.|||||.|..|.+..|++.+|.
T Consensus 490 ~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 490 AVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred eEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 589999999999999 4899 999999999999999999999999999999999987764
>smart00490 HELICc helicase superfamily c-terminal domain
Back Show alignment and domain information
Probab=99.31 E-value=2.4e-12 Score=78.44 Aligned_cols=44 Identities=52% Similarity=0.974 Sum_probs=42.3
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
.|||+|+++++|+|++.+++||.+++|++...|.|++||++|.|
T Consensus 39 ~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 39 KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 58999999999999999999999999999999999999999975
>TIGR01587 cas3_core CRISPR-associated helicase Cas3
Back Show alignment and domain information
Probab=99.29 E-value=3.5e-12 Score=98.26 Aligned_cols=51 Identities=27% Similarity=0.451 Sum_probs=43.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCee----EEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG----VSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g----~~i~~~~ 55 (121)
+|||||+++++|+|++ +++||+++.| +++|+||+||+||.|+.. .++.|..
T Consensus 280 ~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 280 FVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred eEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 6999999999999995 8899999877 789999999999988543 5565554
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Back Show alignment and domain information
Probab=99.26 E-value=3e-12 Score=108.44 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=50.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCCh------------------hhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTT------------------EDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------------------~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++||||++|++||++++|+.. .+|.||.|||||. ..|.++.++++.+.
T Consensus 267 kVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 267 KVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred EEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 699999999999999999999998888643 4799999999999 69999999985543
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Back Show alignment and domain information
Probab=99.25 E-value=1.4e-11 Score=96.46 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=81.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhh-------------------------------------------h
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVH-------------------------------------------R 37 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~-------------------------------------------r 37 (121)
|+|+|+|-++++|||-|+|++|||..+|.+++.|.| .
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfseke 447 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKE 447 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchh
Confidence 579999999999999999999999999999999999 7
Q ss_pred heeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHHHhhhhhhhhhhhhhhccccccc
Q 038184 38 IGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDALLKFGTHVKKKESKLYGAHFREI 102 (121)
Q Consensus 38 ~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (121)
.||+||.+....+|++|.-.|......+..+...-.+.+ -.+..++....+++.-.+..||.|.
T Consensus 448 sgragrd~~~a~cilyy~~~difk~ssmv~~e~~g~q~l-y~mv~y~~d~s~crrv~laehfde~ 511 (695)
T KOG0353|consen 448 SGRAGRDDMKADCILYYGFADIFKISSMVQMENTGIQKL-YEMVRYAADISKCRRVKLAEHFDEA 511 (695)
T ss_pred ccccccCCCcccEEEEechHHHHhHHHHHHHHhhhHHHH-HHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 899999999999999999888887777766555444433 3344566666666666666666543
>PRK02362 ski2-like helicase; Provisional
Back Show alignment and domain information
Probab=99.24 E-value=9e-12 Score=104.58 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=51.8
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC-----CCCChhhhhhhheeceeCCCe--eEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS-----FPLTTEDYVHRIGRTGQAGKK--GVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d-----~P~~~~~y~~r~GR~gR~g~~--g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|.+.+||+ || .|.+..+|+||+|||||.|.. |.++++..+.
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 589999999999999999999998 77 689999999999999999864 8999998754
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Back Show alignment and domain information
Probab=99.22 E-value=7.2e-12 Score=109.48 Aligned_cols=57 Identities=23% Similarity=0.489 Sum_probs=50.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeC---------------CCC---ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYS---------------FPL---TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d---------------~P~---~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++|||||+|.+||+++ +|. +..+|.||+|||||. ..|.++.++++.+.
T Consensus 339 kIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 339 RIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred eEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 7999999999999999999999986 454 447899999999999 78999999986553
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Back Show alignment and domain information
Probab=99.21 E-value=2.3e-11 Score=96.18 Aligned_cols=67 Identities=28% Similarity=0.421 Sum_probs=61.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVN 67 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~ 67 (121)
+.||+||..++||+|-|+|.+|||+++|.++.-|.|..|||||.|...++-++|+.+|...+..+..
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 4699999999999999999999999999999999999999999999999999999888777666643
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=99.17 E-value=1.8e-11 Score=104.41 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=53.6
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
+|+|||++++||+||+ .|. +||+++.|.+...|.||+|||||.|..|.++.|++.+|.-
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 6999999999999999 564 4599999999999999999999999999999999977654
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA
Back Show alignment and domain information
Probab=99.16 E-value=2.1e-11 Score=106.67 Aligned_cols=57 Identities=21% Similarity=0.387 Sum_probs=51.0
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|||||+++++|||||+|.+||++++|. +..+|.||.|||||.+ .|.++.+++..+.
T Consensus 332 kIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 332 RIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred eEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 6999999999999999999999999654 4579999999999997 9999999986543
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
>TIGR00603 rad25 DNA repair helicase rad25
Back Show alignment and domain information
Probab=99.13 E-value=1.4e-10 Score=97.17 Aligned_cols=71 Identities=15% Similarity=0.251 Sum_probs=56.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEE-------EEEEcCcc--HHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVS-------HPFLTNHN--KALAGELVNVLR 70 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~-------i~~~~~~~--~~~~~~i~~~~~ 70 (121)
+++||+|+++.+|+|+|++++||+++.|. +...|+||+||++|.+..|.+ ++++++.. .....+-..++.
T Consensus 543 i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 543 VNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 47899999999999999999999999984 999999999999998866554 77887543 333344455554
Q ss_pred H
Q 038184 71 E 71 (121)
Q Consensus 71 ~ 71 (121)
.
T Consensus 623 ~ 623 (732)
T TIGR00603 623 D 623 (732)
T ss_pred H
Confidence 4
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype
Back Show alignment and domain information
Probab=99.13 E-value=4.6e-11 Score=101.10 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=43.5
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCe-eEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK-GVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~-g~~i~~~~ 55 (121)
+|||||+++++||||+. ++||++..| .++|+||+||+||.|+. +.+++++.
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 58999999999999986 899998877 68999999999999985 44466654
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
>PHA02558 uvsW UvsW helicase; Provisional
Back Show alignment and domain information
Probab=99.10 E-value=9.8e-11 Score=94.64 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=46.3
Q ss_pred cEEEEe-ccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEE
Q 038184 2 YLQVAT-DIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54 (121)
Q Consensus 2 ~iLV~T-d~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~ 54 (121)
+||||| +++++|+|+|++++||++++|.+...|+||+||++|.+..+....++
T Consensus 396 ~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 396 IIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred eEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 589998 89999999999999999999999999999999999987655444444
>PRK00254 ski2-like helicase; Provisional
Back Show alignment and domain information
Probab=99.08 E-value=1.5e-10 Score=96.98 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=49.6
Q ss_pred CcEEEEeccccccCCCCCccEEEE-------eCCCC-ChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN-------YSFPL-TTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~-------~d~P~-~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
++|||||+++++|+|+|.+..||. |+.|. ...+|.||+|||||.| ..|.++++.++.+
T Consensus 322 i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 322 IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 589999999999999999999994 66655 4669999999999975 6799999987644
>PRK01172 ski2-like helicase; Provisional
Back Show alignment and domain information
Probab=98.95 E-value=1.1e-09 Score=91.26 Aligned_cols=56 Identities=27% Similarity=0.441 Sum_probs=45.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC---------CCChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF---------PLTTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~---------P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++|||||+++++|+|+|.. .||++|. |-+..+|.||+|||||.| ..|.++++....
T Consensus 312 i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 312 IKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred CeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 5799999999999999986 5555554 457889999999999998 467788777543
>PRK05580 primosome assembly protein PriA; Validated
Back Show alignment and domain information
Probab=98.90 E-value=2.3e-09 Score=89.57 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=48.3
Q ss_pred CcEEEEeccccccCCCCCccEEE--EeCCCCCh----------hhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI--NYSFPLTT----------EDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi--~~d~P~~~----------~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
++|||+|+++++|+|+|+|++|+ ++|.+.+. ..|+|++||+||.+..|.++......+
T Consensus 481 ~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 481 ADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred CCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 36999999999999999999984 55655543 578999999999999999998775433
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Back Show alignment and domain information
Probab=98.90 E-value=2.9e-09 Score=89.99 Aligned_cols=56 Identities=29% Similarity=0.485 Sum_probs=48.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee-CCCeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ-AGKKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR-~g~~g~~i~~~~~ 56 (121)
++.+|||+.++.|||+.++++||+|..|.++..++||+||+|. .+.....+.+...
T Consensus 305 lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 305 LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 4789999999999999999999999999999999999999994 5555566666554
>TIGR00595 priA primosomal protein N'
Back Show alignment and domain information
Probab=98.80 E-value=7.9e-09 Score=83.85 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=45.7
Q ss_pred CcEEEEeccccccCCCCCccEE--EEeCCCCC----------hhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVV--INYSFPLT----------TEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~V--i~~d~P~~----------~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+.|||+|+++++|+|+|+|++| +++|.+.. ...|+|++||+||.+..|.++....
T Consensus 313 ~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 313 ADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred CCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3699999999999999999987 56775322 4678999999999999999886553
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>PRK14701 reverse gyrase; Provisional
Back Show alignment and domain information
Probab=98.63 E-value=1.3e-08 Score=91.54 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=46.1
Q ss_pred CcEEEEe----ccccccCCCCC-ccEEEEeCCCC---Chhhhhhhh-------------eeceeCCCeeEEEEEEc
Q 038184 1 MYLQVAT----DIAARGLDIPD-VEVVINYSFPL---TTEDYVHRI-------------GRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~T----d~~~~GlDi~~-v~~Vi~~d~P~---~~~~y~~r~-------------GR~gR~g~~g~~i~~~~ 55 (121)
++||||| ++++||||+|+ |.+|||||+|. +++.|.|.. ||+||.|..+.+++.+.
T Consensus 379 ~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 379 IDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred CCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhH
Confidence 5799999 59999999998 99999999999 888888876 99999887655553333
>PRK09694 helicase Cas3; Provisional
Back Show alignment and domain information
Probab=98.59 E-value=2e-07 Score=79.88 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=38.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK 46 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~ 46 (121)
+|||||+++++|+|+ +++.+|....| ++.|+||+||++|.++
T Consensus 623 ~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 623 RILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 599999999999999 68999998888 6899999999999886
>PRK09401 reverse gyrase; Reviewed
Back Show alignment and domain information
Probab=98.53 E-value=4.4e-08 Score=86.07 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=38.9
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCCC------Chhhhhhhheece
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFPL------TTEDYVHRIGRTG 42 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P~------~~~~y~~r~GR~g 42 (121)
++|||| ||+++||||+|+ |++|||||+|. ..+.|.||+||+-
T Consensus 377 ~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 377 VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 579999 699999999999 89999999999 6789999999985
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Back Show alignment and domain information
Probab=98.47 E-value=1.7e-07 Score=81.33 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=47.6
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE--EEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS--HPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~--i~~~~~ 56 (121)
+|++|.+++.|||+..+++||+||+||++..+.|++||+-|.|+...+ +-|++.
T Consensus 543 fLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~ 598 (1033)
T PLN03142 543 FLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTE 598 (1033)
T ss_pred EEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeC
Confidence 689999999999999999999999999999999999999999976544 344443
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=98.34 E-value=6.8e-07 Score=73.48 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=50.8
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc--CccHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT--NHNKALA 62 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~--~~~~~~~ 62 (121)
-+|+|++++-||||.+++.|++..+|-++..+-|..|||||.++...++.+.. |-|...+
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 37999999999999999999999999999999999999999988776665543 4444333
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Back Show alignment and domain information
Probab=98.31 E-value=8.2e-07 Score=77.93 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=41.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG 45 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g 45 (121)
+|||+++++..|+|+|.|.+||.+..|.+...|+|++||+.|..
T Consensus 758 ~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 758 NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 58999999999999999999999999999999999999999953
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Back Show alignment and domain information
Probab=98.22 E-value=2.4e-06 Score=74.41 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=48.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|||||-+.+-|||||+++.+|..+.-. ...++.|-.||+||.++.+.|+.++.+
T Consensus 857 dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 6999999999999999999877765433 478999999999999999999999975
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=98.15 E-value=4.1e-06 Score=67.08 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=41.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+++||++.++.+|+|+|+++++|......+...|+||+||.=|
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 4789999999999999999999999999999999999999988
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Back Show alignment and domain information
Probab=98.10 E-value=9.7e-06 Score=67.45 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=51.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
++|||||.|.+=|+|+|+.++.|.+|.-+ ...++=|=.||+||.+..+.|++++.+...
T Consensus 534 ~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 534 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred CcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 57999999999999999999999987654 366667788999999999999999987663
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Back Show alignment and domain information
Probab=98.06 E-value=2.3e-06 Score=73.40 Aligned_cols=55 Identities=27% Similarity=0.520 Sum_probs=50.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+.++++|++++-|+|+.+++.||++..|. +..+|.||.||+||.++.+..+..+.
T Consensus 365 ~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 365 LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 35789999999999999999999999999 89999999999999997777776665
>TIGR01054 rgy reverse gyrase
Back Show alignment and domain information
Probab=97.91 E-value=1.5e-05 Score=70.47 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=27.7
Q ss_pred CcEEEE----eccccccCCCCC-ccEEEEeCCCCC
Q 038184 1 MYLQVA----TDIAARGLDIPD-VEVVINYSFPLT 30 (121)
Q Consensus 1 i~iLV~----Td~~~~GlDi~~-v~~Vi~~d~P~~ 30 (121)
++|||| ||+++||||+|+ |++|||||+|..
T Consensus 376 ~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 376 IDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred CCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 479999 599999999999 899999999976
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
>COG1204 Superfamily II helicase [General function prediction only]
Back Show alignment and domain information
Probab=97.88 E-value=2.1e-05 Score=66.91 Aligned_cols=55 Identities=27% Similarity=0.472 Sum_probs=45.4
Q ss_pred CcEEEEeccccccCCCCCccEEE----EeC-----CCCChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI----NYS-----FPLTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi----~~d-----~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
|+|||||+.++.|+++|.-..|| -|| .+-++-+|+|+.|||||.| ..|.++.+.+
T Consensus 341 ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 341 IKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred ceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 68999999999999999776655 367 6667889999999999988 4567777774
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.87 E-value=2.1e-05 Score=64.19 Aligned_cols=64 Identities=17% Similarity=0.315 Sum_probs=52.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC-----CCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF-----PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELV 66 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~-----P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~ 66 (121)
.|||.-+.+-+|||+|.|.+|..+|. .++-.+++|-+|||+|. -.|.+|++...--..+.+.+.
T Consensus 498 DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 498 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred cEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 48999999999999999999999874 56789999999999998 579999998754444444443
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Back Show alignment and domain information
Probab=97.79 E-value=2.5e-05 Score=67.20 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=45.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC---------ChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL---------TTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~---------~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++||+||..+++|+++|.-..|+.- +-. .+..|.|+.|||||.| ..|.+|.+....
T Consensus 657 VKVLFATETFAMGVNMPARtvVF~S-l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 657 VKVLFATETFAMGVNMPARTVVFSS-LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eEEEeehhhhhhhcCCCceeEEeee-hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 5899999999999999988777652 222 3789999999999988 578888888644
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Back Show alignment and domain information
Probab=97.73 E-value=1.5e-05 Score=67.21 Aligned_cols=55 Identities=24% Similarity=0.479 Sum_probs=44.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEe----CCC----CChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINY----SFP----LTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~----d~P----~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
+++|.||..++.||++|.-..|+.- |=- -+.-.|+|+.|||||.| ..|.+|++++
T Consensus 473 vKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 473 VKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred HHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 4789999999999999988877652 110 03668999999999988 5799999997
>PRK12904 preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=97.71 E-value=0.00023 Score=60.97 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=50.6
Q ss_pred cEEEEeccccccCCCCCc--------------------------------------cEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDV--------------------------------------EVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------------------------------------~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|+|||++++||+||+-= =|||-...|.+..-=-|-.||+||
T Consensus 480 ~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagR 559 (830)
T PRK12904 480 AVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGR 559 (830)
T ss_pred eEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhccccc
Confidence 699999999999999642 178888899998888899999999
Q ss_pred CCCeeEEEEEEcCccH
Q 038184 44 AGKKGVSHPFLTNHNK 59 (121)
Q Consensus 44 ~g~~g~~i~~~~~~~~ 59 (121)
-|..|.+-.|++-+|.
T Consensus 560 QGdpGss~f~lSleD~ 575 (830)
T PRK12904 560 QGDPGSSRFYLSLEDD 575 (830)
T ss_pred CCCCCceeEEEEcCcH
Confidence 9999999999986654
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Back Show alignment and domain information
Probab=97.70 E-value=6.6e-05 Score=64.45 Aligned_cols=65 Identities=31% Similarity=0.515 Sum_probs=54.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC----CCChhhhhhhheeceeCC--CeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF----PLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~----P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~~~~~~i 65 (121)
+.|++||+.++-|++.|..+.++..-. +.+.-+|.|++|||||+| ..|.+++.+.+.+...+.++
T Consensus 549 i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 549 IFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred eEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 468999999999999999998887532 235779999999999987 57889999998887776654
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Back Show alignment and domain information
Probab=97.65 E-value=7.1e-05 Score=61.42 Aligned_cols=54 Identities=26% Similarity=0.442 Sum_probs=41.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCC---------CChhhhhhhheeceeCCC---eeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFP---------LTTEDYVHRIGRTGQAGK---KGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P---------~~~~~y~~r~GR~gR~g~---~g~~i~~~~ 55 (121)
++||||||+.+|||++ +++-||-|++= -+..+-.|-.|||||.|. .|.+.+|..
T Consensus 410 ~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 410 CDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred cceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 4799999999999995 57777777654 346677899999999874 466665543
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=97.61 E-value=0.00033 Score=60.22 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=49.9
Q ss_pred cEEEEeccccccCCCCCcc--------EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVE--------VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~--------~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|.|||++++||-||.--. |||....|.+..-=-|-.||+||-|..|.+-.|++-+|.
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 4789999999999986433 899999999977777999999999999999999886554
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Back Show alignment and domain information
Probab=97.57 E-value=7.8e-05 Score=63.20 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=42.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC--CeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG--KKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~ 55 (121)
.|+|||+|.+-|+|+. .+.+|. =|..+.+.+||.||++|.| ..|.++.+..
T Consensus 496 ~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 496 FIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred eEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 4899999999999976 676665 3456889999999999999 6777777765
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.50 E-value=0.00044 Score=54.12 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=43.1
Q ss_pred CcEEEEeccccccCCCCCccEEE-EeCCC-CChhhhhhhheeceeCCC--eeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVI-NYSFP-LTTEDYVHRIGRTGQAGK--KGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi-~~d~P-~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~~ 58 (121)
+.|||+|.+++||+-+|+|+..+ .-.-+ .+-..++|-.||+||.-. .|.++.|-....
T Consensus 356 ~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 356 ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 46899999999999999999644 33322 367789999999999543 566666655433
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.49 E-value=0.00023 Score=60.35 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=45.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCC--CCC----------hhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSF--PLT----------TEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~--P~~----------~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
+.|||.|.+++.|.|+|++.+|.-.|. -.. ..-|.|-.|||||.+..|.++.-...-+
T Consensus 535 ~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 535 ADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred CCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 369999999999999999998655443 222 4456889999999999998887775444
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Back Show alignment and domain information
Probab=97.26 E-value=0.00012 Score=60.47 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=45.2
Q ss_pred CcEEEEeccccccCCCCCccEEEE---eCCCC-ChhhhhhhheeceeCC--CeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN---YSFPL-TTEDYVHRIGRTGQAG--KKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~---~d~P~-~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~ 58 (121)
+.++|+|-+++-|+|+|.-+.|+- ...-| ++..|.|++|||||.+ ..|.+++++.+.-
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 357899999999999998875543 12222 6899999999999977 5789999987543
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=97.25 E-value=0.001 Score=57.39 Aligned_cols=58 Identities=26% Similarity=0.290 Sum_probs=48.0
Q ss_pred cEEEEeccccccCCCCCc--------------------------------------cEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDV--------------------------------------EVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------------------------------------~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
.|+|||++++||+||.-= =|||-..-+.+..-=-|=.||+||
T Consensus 494 ~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 494 AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 489999999999998621 168888888887666788899999
Q ss_pred CCCeeEEEEEEcCccH
Q 038184 44 AGKKGVSHPFLTNHNK 59 (121)
Q Consensus 44 ~g~~g~~i~~~~~~~~ 59 (121)
-|..|.+-.|++-+|.
T Consensus 574 QGDPGss~f~lSleD~ 589 (896)
T PRK13104 574 QGDPGSSRFYLSLEDN 589 (896)
T ss_pred CCCCCceEEEEEcCcH
Confidence 9999999999986654
>PRK13107 preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=97.20 E-value=0.0011 Score=57.20 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=48.7
Q ss_pred cEEEEeccccccCCCCC--------------------------------c-----cEEEEeCCCCChhhhhhhheeceeC
Q 038184 2 YLQVATDIAARGLDIPD--------------------------------V-----EVVINYSFPLTTEDYVHRIGRTGQA 44 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~--------------------------------v-----~~Vi~~d~P~~~~~y~~r~GR~gR~ 44 (121)
.|+|||++++||.||.- | =|||-...|.+..-=-|=.||+||-
T Consensus 499 ~VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 499 AVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred cEEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 48999999999999862 1 1688888888877667888999999
Q ss_pred CCeeEEEEEEcCccH
Q 038184 45 GKKGVSHPFLTNHNK 59 (121)
Q Consensus 45 g~~g~~i~~~~~~~~ 59 (121)
|..|.+-.|++-+|.
T Consensus 579 GDPGss~f~lSlED~ 593 (908)
T PRK13107 579 GDAGSSRFYLSMEDS 593 (908)
T ss_pred CCCCceeEEEEeCcH
Confidence 999999999986664
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.15 E-value=0.00036 Score=59.99 Aligned_cols=56 Identities=25% Similarity=0.446 Sum_probs=46.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
+|+++|++++-+|-|++|.+||.-.+-+ +-.+-.||.|||||. ..|+|+=+++.++
T Consensus 315 KVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 315 KVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred eEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 3999999999999999999999654433 345668999999999 5799999998533
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=97.08 E-value=0.0038 Score=54.30 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=50.7
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
.|-|||++++||-||. .|. |||-...|.+..---|-.||+||-|..|.+-.|++-+|.-
T Consensus 618 ~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 618 AVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred cEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 3789999999999984 222 7999999999999999999999999999999999866643
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=97.01 E-value=0.00041 Score=59.29 Aligned_cols=52 Identities=27% Similarity=0.480 Sum_probs=42.2
Q ss_pred EEEEeccccccCCCCCccEEEEe--------CCCCChhhh----------hhhheeceeCCCeeEEEEEEc
Q 038184 3 LQVATDIAARGLDIPDVEVVINY--------SFPLTTEDY----------VHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~--------d~P~~~~~y----------~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++|+|+|++--|-||+|.+||.. |--..+.+| -||.|||||.| .|.|+-+|+
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYS 702 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYS 702 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhh
Confidence 57999999999999999999965 433344444 58999999985 689998886
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=96.95 E-value=0.00075 Score=56.67 Aligned_cols=53 Identities=30% Similarity=0.455 Sum_probs=43.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+|++||++++--|-|++|.+||.-.+-. +-.+=.||.|||||.| .|.|+-+|+
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 5899999999999999999999654433 2344479999999996 789998888
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Back Show alignment and domain information
Probab=96.93 E-value=0.0011 Score=56.35 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=46.5
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
+|.+|-+.+.||++-+.+.||.||.+|+|..=.|.++|+-|.|++..++.+
T Consensus 651 fLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 651 FLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 468899999999999999999999999999999999999999988766544
>PRK12326 preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=96.86 E-value=0.0023 Score=54.33 Aligned_cols=58 Identities=29% Similarity=0.323 Sum_probs=49.6
Q ss_pred cEEEEeccccccCCCCC----------cc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPD----------VE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~----------v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|-|||++++||-||.- |. |||-...|.+..-=-|-.||+||-|..|.+-.|++-+|.
T Consensus 477 aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 477 AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 37899999999999862 21 799999999988888999999999999999999985554
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=96.66 E-value=0.0012 Score=55.70 Aligned_cols=54 Identities=33% Similarity=0.572 Sum_probs=44.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC------------------CCChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~------------------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+++|||++++--|-|+++.+||...+ |-+-.+=-||.|||||.| .|.|+-+|+.
T Consensus 625 K~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 625 KCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred eEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 58999999999999999999987643 333445578999999985 7899999984
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Back Show alignment and domain information
Probab=96.62 E-value=0.0014 Score=56.76 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=44.1
Q ss_pred cEEEEeccccccCCCCCccEEEEe--------CCCCChh----------hhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINY--------SFPLTTE----------DYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~--------d~P~~~~----------~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|+++|++++-.|-|++|-+||.. |.-.+.. .=.||.|||||. ..|.++.+++.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~ 543 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTR 543 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeech
Confidence 589999999999999999999864 4433322 337999999999 78999999974
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=96.58 E-value=0.0019 Score=53.88 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=46.7
Q ss_pred cEEEEeccccccCCCCCccEEEEeCC------------------CCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSF------------------PLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~------------------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
+|+++|++++--|-|+++.+||.-.+ |-+-.+=.||.|||||.+ .|.++-+|+.++.
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 58999999999999999999986433 345566789999999994 7999999986543
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=96.44 E-value=0.0065 Score=53.34 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=49.7
Q ss_pred cEEEEeccccccCCCC---Cc-----cEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 2 YLQVATDIAARGLDIP---DV-----EVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v-----~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
.|-|||++++||-||. .| =|||-...|.|..---|-.||+||-|..|.+-.|++-+|.
T Consensus 678 aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 678 TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred cEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 3779999999999986 22 2788889999988889999999999999999999986554
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Back Show alignment and domain information
Probab=96.33 E-value=0.0094 Score=50.97 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=53.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEE--EEcC---ccHHHHHHHHHHH
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHP--FLTN---HNKALAGELVNVL 69 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~--~~~~---~~~~~~~~i~~~~ 69 (121)
+|++|-|.+-|+++...+-||.||+-|+|.+=.|..-||.|.|+..-+++ +++. +|.-..++|.+..
T Consensus 602 FLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~ 673 (923)
T KOG0387|consen 602 FLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQF 673 (923)
T ss_pred EEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999997654443 3443 3444555554443
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=96.29 E-value=0.0046 Score=54.23 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=44.1
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eC----CCCChhhhhhhheeceeCC--CeeEEEEEEcC
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YS----FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTN 56 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d----~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~ 56 (121)
++|+.+|.+++.|+++|.=+.|+- +| -+-++..|.|..|||||.| ..|.+|+.-.+
T Consensus 471 vkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 471 VKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 579999999999999997776553 22 2345889999999999988 46888877543
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Back Show alignment and domain information
Probab=96.11 E-value=0.014 Score=51.21 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=43.2
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eCCCC------ChhhhhhhheeceeCC--CeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YSFPL------TTEDYVHRIGRTGQAG--KKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d~P~------~~~~y~~r~GR~gR~g--~~g~~i~~~~~~ 57 (121)
++||+||..++=|+++|+-..+|- ||.-. ..-+-+|-.|||||.+ ..|.++.+.+..
T Consensus 423 i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 423 IKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred ceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 689999999999999997654442 44333 2556799999999954 779998888743
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Back Show alignment and domain information
Probab=96.07 E-value=0.013 Score=51.30 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=44.6
Q ss_pred cEEEEeccccccCCCCCccEEEEeC-CCCChhhhhhhheeceeCC--CeeEEEEEEcCccHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYS-FPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d-~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~~~~~~i 65 (121)
.||+||..++-||++|=-..|+--| +-.++-.|-|+.|||||.| ..|.++.+--| ...+..+
T Consensus 990 ~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP--~~kv~rL 1054 (1330)
T KOG0949|consen 990 QVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP--RQKVQRL 1054 (1330)
T ss_pred EEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc--HHHHHHH
Confidence 6899999999999999555555544 3446889999999999987 35666655433 3444444
>PF13871 Helicase_C_4: Helicase_C-like
Back Show alignment and domain information
Probab=95.88 E-value=0.034 Score=42.37 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=51.7
Q ss_pred cEEEEeccccccCCCCCc--------cEEEEeCCCCChhhhhhhheeceeCCCe-eEEEEEE-c--CccHHHHHHHHHHH
Q 038184 2 YLQVATDIAARGLDIPDV--------EVVINYSFPLTTEDYVHRIGRTGQAGKK-GVSHPFL-T--NHNKALAGELVNVL 69 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v--------~~Vi~~d~P~~~~~y~~r~GR~gR~g~~-g~~i~~~-~--~~~~~~~~~i~~~~ 69 (121)
.|+|.|++++-||-++.- ..-|...+||+.+..+|..||+-|.++. .-.+.++ + +.|......+...+
T Consensus 63 ~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE~Rfas~va~rL 142 (278)
T PF13871_consen 63 DVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGERRFASTVARRL 142 (278)
T ss_pred eEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHHHHHHHHHHHHH
Confidence 689999999999987632 2355679999999999999999998863 3333333 3 34556666666666
Q ss_pred HHhc
Q 038184 70 REAR 73 (121)
Q Consensus 70 ~~~~ 73 (121)
...+
T Consensus 143 ~sLg 146 (278)
T PF13871_consen 143 ESLG 146 (278)
T ss_pred hhcc
Confidence 6543
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Back Show alignment and domain information
Probab=95.85 E-value=0.018 Score=50.05 Aligned_cols=58 Identities=31% Similarity=0.360 Sum_probs=48.5
Q ss_pred cEEEEeccccccCCCC--------------------------------Ccc-----EEEEeCCCCChhhhhhhheeceeC
Q 038184 2 YLQVATDIAARGLDIP--------------------------------DVE-----VVINYSFPLTTEDYVHRIGRTGQA 44 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--------------------------------~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~ 44 (121)
.|-|||++++||-||. .|. |||-...|.|..-=-|=.||+||-
T Consensus 499 aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQ 578 (913)
T PRK13103 499 ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQ 578 (913)
T ss_pred cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccC
Confidence 3789999999999984 121 688888999877777889999999
Q ss_pred CCeeEEEEEEcCccH
Q 038184 45 GKKGVSHPFLTNHNK 59 (121)
Q Consensus 45 g~~g~~i~~~~~~~~ 59 (121)
|..|.+-.|++-+|.
T Consensus 579 GDPGsS~f~lSlED~ 593 (913)
T PRK13103 579 GDPGSSRFYLSLEDS 593 (913)
T ss_pred CCCCceEEEEEcCcH
Confidence 999999999986554
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Back Show alignment and domain information
Probab=95.47 E-value=0.02 Score=51.29 Aligned_cols=55 Identities=25% Similarity=0.397 Sum_probs=42.0
Q ss_pred CcEEEEeccccccCCCCCccEEEE----eCC------CCChhhhhhhheeceeCCC--eeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN----YSF------PLTTEDYVHRIGRTGQAGK--KGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~----~d~------P~~~~~y~~r~GR~gR~g~--~g~~i~~~~ 55 (121)
++|||+|-.++.|+++|.-..+|- ||. +.++.+-+||.|||||.+. .|..++...
T Consensus 634 iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 634 IQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred eeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 579999999999999998887764 554 3358888999999999763 444444433
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=95.46 E-value=0.03 Score=47.48 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=43.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSH 51 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i 51 (121)
+|++|-+.+.|+++...++||+||..|++....|...|+-|.|+...+-
T Consensus 766 ~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred EEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 5688889999999999999999999999999999999998988765443
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family
Back Show alignment and domain information
Probab=95.36 E-value=0.025 Score=47.78 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=42.2
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeC-C---CeeEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQA-G---KKGVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~-g---~~g~~i~~~~ 55 (121)
++|||+++.+..|.|.|.++.++..- |...-.++|.+||+.|. . ..|..+-|+.
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyldK-plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLDK-PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEec-cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 47999999999999999999888754 55555799999999993 2 2356665654
Members of this family are assumed to differ from each other in DNA site specificity.
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Back Show alignment and domain information
Probab=94.99 E-value=0.023 Score=46.70 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=45.0
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCC------------------ChhhhhhhheeceeCCCeeEEEEEEcC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPL------------------TTEDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~------------------~~~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
+|+|+|++++--+-+++|.+||.-.+-. +-.+=.||.||+||. +.|.+..+|+.
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 5899999999999999999999766543 344557899999887 78999999984
>COG4889 Predicted helicase [General function prediction only]
Back Show alignment and domain information
Probab=94.94 E-value=0.028 Score=49.15 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=43.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCC---CeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAG---KKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g---~~g~~i~~~~ 55 (121)
+||----.+++|+|+|.++.||-||.-.+..+-+|.+||+=|-. ..|..|+-+.
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred eeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 45544556899999999999999999999999999999987732 4567766654
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative
Back Show alignment and domain information
Probab=94.74 E-value=0.021 Score=49.38 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=38.6
Q ss_pred cEEEEeccccccCCCCCcc--EEEEeCCCCC------------------------------hhhhhhhheeceeCCCeeE
Q 038184 2 YLQVATDIAARGLDIPDVE--VVINYSFPLT------------------------------TEDYVHRIGRTGQAGKKGV 49 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~--~Vi~~d~P~~------------------------------~~~y~~r~GR~gR~g~~g~ 49 (121)
.||++|+.+.+|+|+++.. +||...+|.. ...+.|-+||.-|.....-
T Consensus 727 ~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G 806 (850)
T TIGR01407 727 AILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRG 806 (850)
T ss_pred eEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceE
Confidence 4899999999999999777 5666777643 1233677899888765433
Q ss_pred EEEEEcC
Q 038184 50 SHPFLTN 56 (121)
Q Consensus 50 ~i~~~~~ 56 (121)
++.+++.
T Consensus 807 ~v~ilD~ 813 (850)
T TIGR01407 807 SIVILDR 813 (850)
T ss_pred EEEEEcc
Confidence 4555554
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A
Back Show alignment and domain information
Probab=94.72 E-value=0.083 Score=36.81 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred EEEEec--cccccCCCCC--ccEEEEeCCCCC-hh-----------------------------hhhhhheeceeCCCee
Q 038184 3 LQVATD--IAARGLDIPD--VEVVINYSFPLT-TE-----------------------------DYVHRIGRTGQAGKKG 48 (121)
Q Consensus 3 iLV~Td--~~~~GlDi~~--v~~Vi~~d~P~~-~~-----------------------------~y~~r~GR~gR~g~~g 48 (121)
||+++. .+.+|+|+++ +..||...+|.- +. ...|-+||+-|..+.-
T Consensus 62 il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~ 141 (167)
T PF13307_consen 62 ILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDY 141 (167)
T ss_dssp EEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-E
T ss_pred EEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCc
Confidence 788888 8999999985 778999999852 11 1146689998887654
Q ss_pred EEEEEEcC
Q 038184 49 VSHPFLTN 56 (121)
Q Consensus 49 ~~i~~~~~ 56 (121)
-++.++++
T Consensus 142 g~i~llD~ 149 (167)
T PF13307_consen 142 GVIILLDS 149 (167)
T ss_dssp EEEEEESG
T ss_pred EEEEEEcC
Confidence 45555553
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Back Show alignment and domain information
Probab=94.61 E-value=0.045 Score=48.85 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=47.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeE--EEEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV--SHPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~--~i~~~~~ 56 (121)
+|+||=+.+-||++...+.||.||--|+|..=+|...||-|-|++.. ++-|++.
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 68999999999999999999999999999999999999999887544 4555654
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type
Back Show alignment and domain information
Probab=94.51 E-value=0.023 Score=44.38 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=15.4
Q ss_pred eCCCCChhhhhhhheece
Q 038184 25 YSFPLTTEDYVHRIGRTG 42 (121)
Q Consensus 25 ~d~P~~~~~y~~r~GR~g 42 (121)
++ |.++++|+||+||+|
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 55 999999999999986
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3
Back Show alignment and domain information
Probab=94.50 E-value=0.028 Score=49.68 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=34.3
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK 46 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~ 46 (121)
-|+|+|.+.+-|+|+ +.+.+|. -|..+.+.+||.||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 488999999999995 3555544 56789999999999999875
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Back Show alignment and domain information
Probab=94.23 E-value=0.13 Score=44.36 Aligned_cols=51 Identities=16% Similarity=0.288 Sum_probs=45.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
+|++|=+.+-||++...+.||.||--|+|..=+|..-||-|-|+...+++|
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 589999999999999999999999999999999999999898876655444
>smart00492 HELICc3 helicase superfamily c-terminal domain
Back Show alignment and domain information
Probab=94.17 E-value=0.17 Score=34.59 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||++|.-+++|+|+++ +..||...+|.
T Consensus 51 iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 51 ILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEEccceecceecCCCCeeEEEEEecCC
Confidence 8899988999999986 56788888885
>smart00491 HELICc2 helicase superfamily c-terminal domain
Back Show alignment and domain information
Probab=93.94 E-value=0.2 Score=34.27 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=22.2
Q ss_pred EEEEecc--ccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDI--AARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~--~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||+++.- +++|+|+++ +..||...+|.
T Consensus 50 iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 50 LLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 6777766 999999986 67899988885
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Back Show alignment and domain information
Probab=93.48 E-value=0.015 Score=53.13 Aligned_cols=43 Identities=28% Similarity=0.586 Sum_probs=40.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|+|++|.++..|+|++.|+.|+.++.|.....|+|+.||+-+
T Consensus 355 ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~ 397 (1606)
T KOG0701|consen 355 LNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARA 397 (1606)
T ss_pred hhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhccccc
Confidence 4789999999999999999999999999999999999999844
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Back Show alignment and domain information
Probab=93.22 E-value=0.06 Score=47.44 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=46.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPF 53 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~ 53 (121)
.||.|-+.+-||++-..+-||.||..|+|.-=+|.+=|+-|.|+..-++.+
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 589999999999999999999999999999889999999999987665544
>TIGR00596 rad1 DNA repair protein (rad1)
Back Show alignment and domain information
Probab=92.94 E-value=0.3 Score=42.35 Aligned_cols=50 Identities=14% Similarity=0.018 Sum_probs=37.0
Q ss_pred EEeccccccCCCCC----------------------c----------cEEEEeCCCCChhhhhh--hheeceeCCCeeEE
Q 038184 5 VATDIAARGLDIPD----------------------V----------EVVINYSFPLTTEDYVH--RIGRTGQAGKKGVS 50 (121)
Q Consensus 5 V~Td~~~~GlDi~~----------------------v----------~~Vi~~d~P~~~~~y~~--r~GR~gR~g~~g~~ 50 (121)
|+|++.+.|+|++. + ++||.|++=.+...-++ |.||+||. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 67888899999997 5 89999997666666666 66666555 566
Q ss_pred EEEEcCc
Q 038184 51 HPFLTNH 57 (121)
Q Consensus 51 i~~~~~~ 57 (121)
+.++...
T Consensus 508 yfL~y~~ 514 (814)
T TIGR00596 508 YFLYYGG 514 (814)
T ss_pred EEEEECC
Confidence 6666543
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=92.35 E-value=0.34 Score=40.49 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=38.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCCC------------------------------hhhhhhhheeceeCCCeeEE
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPLT------------------------------TEDYVHRIGRTGQAGKKGVS 50 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~~------------------------------~~~y~~r~GR~gR~g~~g~~ 50 (121)
+||+|..+.+|+|+++ +..||...+|.- +....|-+||.=|.-...-+
T Consensus 531 ~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ 610 (654)
T COG1199 531 ILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGV 610 (654)
T ss_pred EEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceE
Confidence 7999999999999984 567888888765 33447888999885443333
Q ss_pred EEEEc
Q 038184 51 HPFLT 55 (121)
Q Consensus 51 i~~~~ 55 (121)
+.+++
T Consensus 611 ivllD 615 (654)
T COG1199 611 IVLLD 615 (654)
T ss_pred EEEec
Confidence 33443
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Back Show alignment and domain information
Probab=91.91 E-value=0.11 Score=44.85 Aligned_cols=42 Identities=17% Similarity=0.375 Sum_probs=38.8
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheecee
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQ 43 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR 43 (121)
+|-|+.+++.-|+|+|.|-+++-+-.-.|...|-|++||.=|
T Consensus 483 ~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 483 RIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred ceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 578999999999999999999999999999999999999766
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=91.67 E-value=0.19 Score=43.37 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=42.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCC--eeEEEEEEcCcc
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGK--KGVSHPFLTNHN 58 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~--~g~~i~~~~~~~ 58 (121)
+|++|-+.+-||++...++||.||+-.+|-+=.|.--|+-|.|+ .-.++-+++..-
T Consensus 832 FLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 832 FLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred EEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 58999999999999999999999998886555555555555554 345666676543
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Back Show alignment and domain information
Probab=91.47 E-value=0.55 Score=40.01 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.0
Q ss_pred EEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||++|+.+.+|+|+|+ +.+||..-+|.
T Consensus 588 VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 588 VLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred EEEEeccccccccCCCCceEEEEEEcCCC
Confidence 8999999999999985 78899888875
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases
Back Show alignment and domain information
Probab=90.83 E-value=0.55 Score=34.90 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=54.9
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheece-eCCCeeEEEEEEcCccHHHHHHHHHHHHHh
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTG-QAGKKGVSHPFLTNHNKALAGELVNVLREA 72 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~g-R~g~~g~~i~~~~~~~~~~~~~i~~~~~~~ 72 (121)
.|+|.=+.++||+-++++...+..--|.+.++++||.-.-| |.|-...+=+++++.-...+..+.......
T Consensus 137 ~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~l 208 (239)
T PF10593_consen 137 VIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEEL 208 (239)
T ss_pred EEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888888999999999976566 666677777777765556666655444433
This domain is found associated with a helicase domain of superfamily type II [].
>CHL00122 secA preprotein translocase subunit SecA; Validated
Back Show alignment and domain information
Probab=90.57 E-value=0.83 Score=39.93 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=19.8
Q ss_pred hhheeceeCCCeeEEEEEEcCccH
Q 038184 36 HRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 36 ~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
|=.||+||-|-.|.+-.|++-+|.
T Consensus 610 QLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 610 QLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred HHhccccCCCCCCcceEEEEeccH
Confidence 455999999999999999886554
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Back Show alignment and domain information
Probab=90.06 E-value=0.68 Score=42.07 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=39.3
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCCh------hhhhhhheeceeCCCeeEEEEEEcC
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTT------EDYVHRIGRTGQAGKKGVSHPFLTN 56 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~------~~y~~r~GR~gR~g~~g~~i~~~~~ 56 (121)
.|++|-..+-||++...+.||.||--|++ .+..||||+| |. -..+-|++.
T Consensus 1331 fILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt-RD---VHIYRLISe 1386 (1958)
T KOG0391|consen 1331 FILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT-RD---VHIYRLISE 1386 (1958)
T ss_pred EEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc-cc---eEEEEeecc
Confidence 46788889999999999999999999984 4778899888 43 244555553
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Back Show alignment and domain information
Probab=89.65 E-value=0.39 Score=41.48 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=41.7
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV 49 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~ 49 (121)
+|++|-+.+-||++...+.||.||.-|++.-=.|..-||-|-|+...
T Consensus 1098 FLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrd 1144 (1185)
T KOG0388|consen 1098 FLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRD 1144 (1185)
T ss_pred EEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccc
Confidence 57899999999999999999999999999888888888888876543
>PRK14873 primosome assembly protein PriA; Provisional
Back Show alignment and domain information
Probab=88.61 E-value=1.3 Score=37.69 Aligned_cols=52 Identities=12% Similarity=-0.034 Sum_probs=36.5
Q ss_pred cEEEEec----cccccCCCCCccEEEEeCC------CC------ChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 2 YLQVATD----IAARGLDIPDVEVVINYSF------PL------TTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 2 ~iLV~Td----~~~~GlDi~~v~~Vi~~d~------P~------~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
.|||.|. +++ +++.+|+..|. |. ....+.|-.||+||....|.++....++.
T Consensus 473 ~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~~ 540 (665)
T PRK14873 473 ALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESSL 540 (665)
T ss_pred CEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCCC
Confidence 5999998 555 36677665553 21 14455788999999988999988765443
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Back Show alignment and domain information
Probab=88.22 E-value=0.64 Score=38.54 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEE--EEEc--CccHHHHHHHHHHHH
Q 038184 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSH--PFLT--NHNKALAGELVNVLR 70 (121)
Q Consensus 5 V~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i--~~~~--~~~~~~~~~i~~~~~ 70 (121)
+.-.+++.||++...+.|+-..+||++.-++|.--|+-|.|+...+- .|+. ..|...+..+.+.+.
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 44557789999999999999999999999988777777776544332 2222 345666666655544
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Back Show alignment and domain information
Probab=88.12 E-value=0.73 Score=41.75 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=43.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS 50 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~ 50 (121)
+|.+|.|.+-|+++.+.+.||.++--|+|-.=+|.+-||-|-|++..+
T Consensus 1398 LlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1398 LLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceee
Confidence 468999999999999999999999999998889999999999876543
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Back Show alignment and domain information
Probab=87.46 E-value=1.3 Score=39.38 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=45.2
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~ 54 (121)
+|..|-+.+.|++++-.+.||.||.-|++....|+.-||-|.|....+-++.
T Consensus 782 FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 5789999999999999999999999999999999999998888665544443
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Back Show alignment and domain information
Probab=86.79 E-value=1.8 Score=38.20 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=23.9
Q ss_pred cEEEEeccccccCCCCC--ccEEEEeCCCC
Q 038184 2 YLQVATDIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
.||++|+.+.+|+|+|+ +.+||..-+|.
T Consensus 806 ~iLlG~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 806 AILLGTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred eEEEecCcccCccccCCCceEEEEEecCCC
Confidence 38999999999999985 57888888775
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=86.52 E-value=1.5 Score=39.21 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=28.1
Q ss_pred Chhhhhhhheecee--CC--CeeEEEEEEcCccHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQ--AG--KKGVSHPFLTNHNKALAGELVNVLR 70 (121)
Q Consensus 30 ~~~~y~~r~GR~gR--~g--~~g~~i~~~~~~~~~~~~~i~~~~~ 70 (121)
++.+|+|..|||.| +| ..|.++.+++ |...++.+.+.+.
T Consensus 528 D~~TYIQaSGRtSRLyaGglTkGlSvvlvd--d~~~f~~L~krm~ 570 (1187)
T COG1110 528 DVRTYIQASGRTSRLYAGGLTKGLSVVLVD--DPEVFEGLIKRMS 570 (1187)
T ss_pred ChhhheeccchHhhhhccccccceEEEEec--CHHHHHHHHHHHH
Confidence 78899999999999 33 3566676665 4456666666665
>TIGR00604 rad3 DNA repair helicase (rad3)
Back Show alignment and domain information
Probab=84.57 E-value=2.9 Score=35.59 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.7
Q ss_pred EEEEe--ccccccCCCCC--ccEEEEeCCCC
Q 038184 3 LQVAT--DIAARGLDIPD--VEVVINYSFPL 29 (121)
Q Consensus 3 iLV~T--d~~~~GlDi~~--v~~Vi~~d~P~ 29 (121)
||+|+ .-+++|||+++ +..||...+|-
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 78888 89999999985 67899999997
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Back Show alignment and domain information
Probab=83.98 E-value=3 Score=36.33 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=22.0
Q ss_pred cEEEEeccccccCCCC--CccEEEEeCCCC
Q 038184 2 YLQVATDIAARGLDIP--DVEVVINYSFPL 29 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~--~v~~Vi~~d~P~ 29 (121)
.||++|+.+.+|+|+| ....||..-+|.
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF 725 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPF 725 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCC
Confidence 4899999999999997 355566666663
>PRK09401 reverse gyrase; Reviewed
Back Show alignment and domain information
Probab=82.82 E-value=3 Score=37.83 Aligned_cols=40 Identities=30% Similarity=0.451 Sum_probs=29.0
Q ss_pred ChhhhhhhheeceeC--C--CeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 30 TTEDYVHRIGRTGQA--G--KKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 30 ~~~~y~~r~GR~gR~--g--~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
++.+|+|..|||.|. | ..|.++++++ |...++.+.+.++-
T Consensus 518 d~~tYiqasGRtSrl~~gg~t~glsv~l~d--d~~~~~~l~~~~~~ 561 (1176)
T PRK09401 518 DVTTYIQASGRTSRLYAGGLTKGLSVLLVD--DEKLFESLKKKLRW 561 (1176)
T ss_pred CcchheecccchhcccCCCccceeEEEEec--CHHHHHHHHHHHHH
Confidence 678999999999993 3 3677777776 45566666666653
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 121
d1a1va2 299
c.37.1.14 (A:326-624) HCV helicase domain {Human h
1e-15 d1wp9a2 286
c.37.1.19 (A:201-486) putative ATP-dependent RNA h
7e-14 d1fuka_ 162
c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
8e-12 d1hv8a2 155
c.37.1.19 (A:211-365) Putative DEAD box RNA helica
1e-10 d2j0sa2 168
c.37.1.19 (A:244-411) Probable ATP-dependent RNA h
3e-09 d1jr6a_ 138
c.37.1.14 (A:) HCV helicase domain {Human hepatiti
4e-09 d2fwra1 200
c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar
2e-08 d1gkub2 248
c.37.1.16 (B:251-498) Helicase-like "domain" of re
2e-08 d1t5la2 181
c.37.1.19 (A:415-595) Nucleotide excision repair e
2e-07 d2bmfa2 305
c.37.1.14 (A:178-482) Dengue virus helicase {Dengu
6e-07 d1s2ma2 171
c.37.1.19 (A:252-422) Putative ATP-dependent RNA h
1e-06 d2p6ra4 201
c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob
3e-06 d1oywa3 200
c.37.1.19 (A:207-406) RecQ helicase domain {Escher
2e-05 d2rb4a1 168
c.37.1.19 (A:307-474) ATP-dependent RNA helicase D
2e-04 d1t5ia_ 168
c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5
3e-04 d1c4oa2 174
c.37.1.19 (A:410-583) Nucleotide excision repair e
0.004
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 68.8 bits (168), Expect = 1e-15
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 5 VATDIAARGLDIPDVE---VVINYSFPLTTEDYVHRIGRTGQAGKKGVSH 51
+ + ++ + + P R GRTG+ GK G+
Sbjct: 101 IDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYR 149
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]
Score = 63.8 bits (154), Expect = 7e-14
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGV 49
VAT + GLD+P+V++V+ Y + + R GRTG+ V
Sbjct: 224 VATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRV 268
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (135), Expect = 8e-12
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
+ ++TD+ ARG+D+ V +VINY P E+Y+HRIGR G+ G+KGV+ F+TN +
Sbjct: 78 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 137
Query: 61 LAGELVNVLREARQVVPDAL 80
EL + +P +
Sbjct: 138 AMRELEKFYSTQIEELPSDI 157
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 53.0 bits (126), Expect = 1e-10
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
+ + +ATD+ +RG+D+ D+ VINY P E Y+HRIGRTG+AGKKG + +
Sbjct: 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYK 138
Query: 61 LAGELVNVLR 70
+ ++
Sbjct: 139 KLRYIERAMK 148
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (118), Expect = 3e-09
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 5 VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGE 64
++TD+ ARGLD+P V ++INY P E Y+HRIGR+G+ G+KGV+ F+ N + + +
Sbjct: 89 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRD 148
Query: 65 LVNVLREARQVVP 77
+ +P
Sbjct: 149 IEQYYSTQIDEMP 161
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 48.9 bits (116), Expect = 4e-09
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 5 VATDIAARGLDIPDVEV---VINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59
VATD G V + P R GRTG+ GK G+ F+ +
Sbjct: 83 VATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGIYR-FVAPGER 138
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.4 bits (114), Expect = 2e-08
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 15 DIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG 48
D+PD V + S + +Y+ R+GR + K
Sbjct: 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGK 186
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.2 bits (114), Expect = 2e-08
Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 7 TDIAARGLDIPD-VEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65
RGLD+P+ + + P + I + V N L
Sbjct: 80 YGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 135
Query: 66 VNVLREARQVVPDALLKFGTHVKKK 90
+ + V + L K + +
Sbjct: 136 LPAVERHIDEVREILKKVMGKERPQ 160
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]
Score = 45.2 bits (106), Expect = 2e-07
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 5 VATDIAARGLDIPDVEVVINY-----SFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58
V ++ GLDIP+V +V F + + IGR + V T
Sbjct: 86 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIMYADTITK 144
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]
Score = 44.1 bits (103), Expect = 6e-07
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 19/64 (29%)
Query: 5 VATDIAARGLDIP---------DVEVVINYS----------FPLTTEDYVHRIGRTGQAG 45
V TDI+ G + ++ VI P+T R GR G+
Sbjct: 229 VTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNP 288
Query: 46 KKGV 49
K
Sbjct: 289 KNEN 292
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 1e-06
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
+ V +D+ RG+DI V VVIN+ FP T E Y+HRIGR+G+ G G++ + +++
Sbjct: 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 142
Query: 61 LAGELVNVLREARQVVPDALLK 82
++ L +P + K
Sbjct: 143 NLYKIEQELGTEIAAIPATIDK 164
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.8 bits (97), Expect = 3e-06
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 5 VATDIAARGLDIPDVEVVI-------NYSFPLTTEDYVHRIGRTGQAGKKGVSHPFL 54
VAT A G+++P V++ YS + +Y GR G+ G +
Sbjct: 125 VATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAII 181
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 2e-05
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 4 QVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
VAT G++ P+V V+++ P E Y GR G+ G + F + A
Sbjct: 84 VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 140
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 3e-04
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60
+ VAT++ RG+DI V + NY P ++ Y+HR+ R G+ G KG++ F+++ N A
Sbjct: 78 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDA 137
Query: 61 -LAGELVNVLREARQVVPDAL 80
+ ++ + +PD +
Sbjct: 138 KILNDVQDRFEVNISELPDEI 158
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]
Score = 32.7 bits (74), Expect = 0.004
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 5 VATDIAARGLDIPDVEVVINYS-----FPLTTEDYVHRIGRTGQAG 45
V ++ GLDIP+V +V F + + IGR +
Sbjct: 86 VGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 121
d1fuka_ 162
Initiation factor 4a {Baker's yeast (Saccharomyces
99.92 d2j0sa2 168
Probable ATP-dependent RNA helicase DDX48 {Human (
99.91 d1s2ma2 171
Putative ATP-dependent RNA helicase DHH1 {Baker's
99.9 d1hv8a2 155
Putative DEAD box RNA helicase {Archaeon Methanoco
99.88 d2rb4a1 168
ATP-dependent RNA helicase DDX25 {Human (Homo sapi
99.88 d1oywa3 200
RecQ helicase domain {Escherichia coli [TaxId: 562
99.87 d1t5ia_ 168
Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo
99.84 d1t5la2 181
Nucleotide excision repair enzyme UvrB {Bacillus c
99.76 d1jr6a_ 138
HCV helicase domain {Human hepatitis C virus (HCV)
99.75 d1wp9a2 286
putative ATP-dependent RNA helicase PF2015 {Pyroco
99.72 d1c4oa2 174
Nucleotide excision repair enzyme UvrB {Thermus th
99.69 d1gm5a4 206
RecG helicase domain {Thermotoga maritima [TaxId:
99.58 d1gkub2 248
Helicase-like "domain" of reverse gyrase {Archaeon
99.55 d2p6ra4 201
Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22
99.47 d2fwra1 200
DNA repair protein RAD25 {Archaeoglobus fulgidus [
99.4 d1a1va2 299
HCV helicase domain {Human hepatitis C virus (HCV)
99.35 d2eyqa5 211
Transcription-repair coupling factor, TRCF {Escher
99.12 d2bmfa2 305
Dengue virus helicase {Dengue virus type 2 [TaxId:
99.04 d1z3ix1 346
Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI
98.6 d1yksa2 299
YFV helicase domain {Yellow fever virus [TaxId: 11
98.57 d1z5za1 244
Helicase of the SNF2/Rad54 hamily {Sulfolobus solf
98.53 d1tf5a4 175
Translocation ATPase SecA, nucleotide-binding doma
98.31 d1nkta4 219
Translocation ATPase SecA, nucleotide-binding doma
95.69
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.3e-26 Score=159.48 Aligned_cols=82 Identities=37% Similarity=0.676 Sum_probs=71.3
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++||||||+++||+|+++|++|||||+|++++.|+||+||+||.|+.|.+++|+++.|...+..+++.++...+++|..+
T Consensus 78 ~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~~~ 157 (162)
T d1fuka_ 78 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 157 (162)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred cceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCChHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999988888888888765
Q ss_pred Hh
Q 038184 81 LK 82 (121)
Q Consensus 81 ~~ 82 (121)
..
T Consensus 158 ~~ 159 (162)
T d1fuka_ 158 AT 159 (162)
T ss_dssp TT
T ss_pred HH
Confidence 43
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.4e-25 Score=155.22 Aligned_cols=79 Identities=35% Similarity=0.659 Sum_probs=72.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++||||||+++||+|+|+|++|||||+|+++.+|+||+||+||.|+.|.+++|+++.|...++.+++.++...+++|..
T Consensus 85 ~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p~~ 163 (168)
T d2j0sa2 85 SRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 163 (168)
T ss_dssp SCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred ccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCCcC
Confidence 4799999999999999999999999999999999999999999999999999999999998888887777666666643
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.9e-24 Score=148.45 Aligned_cols=80 Identities=33% Similarity=0.592 Sum_probs=74.1
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHHhcccChHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLREARQVVPDAL 80 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 80 (121)
++|||||++++||+|+|++++|||||+|+++.+|+||+||+||.|+.|.+++|+++.|...+..+++.+......+|..+
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~~ 162 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATI 162 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred cccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999888877777777654
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.88 E-value=1e-23 Score=143.45 Aligned_cols=71 Identities=37% Similarity=0.677 Sum_probs=65.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGELVNVLRE 71 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i~~~~~~ 71 (121)
.+|||||+++++|+|+|+|++|||||+|+++.+|+||+||+||.|+.|.+++++++.|...++.+++.++.
T Consensus 79 ~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 149 (155)
T d1hv8a2 79 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 149 (155)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred ceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCC
Confidence 47999999999999999999999999999999999999999999999999999999998888887766554
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.1e-23 Score=146.91 Aligned_cols=65 Identities=25% Similarity=0.423 Sum_probs=61.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||++++||||+|+|++|||||+|.++.+|+||+|||||.|+.|.+++|+++.|...++++
T Consensus 81 ~~ilvaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 81 LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp CSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred ceEEEecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999888777655
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4e-22 Score=137.45 Aligned_cols=80 Identities=28% Similarity=0.614 Sum_probs=68.9
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCc-cHHHHHHHHHHHHHhcccChHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNH-NKALAGELVNVLREARQVVPDA 79 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 79 (121)
++|||||+++++|+|+|.+++||+||+|+++.+|+||+||+||.|+.|.+++|+++. +...+..+++.+.....++|+.
T Consensus 78 ~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~elp~~ 157 (168)
T d1t5ia_ 78 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 157 (168)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred ceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccCCch
Confidence 479999999999999999999999999999999999999999999999999999875 4566677777777667777776
Q ss_pred H
Q 038184 80 L 80 (121)
Q Consensus 80 l 80 (121)
+
T Consensus 158 ~ 158 (168)
T d1t5ia_ 158 I 158 (168)
T ss_dssp -
T ss_pred h
Confidence 5
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]
Probab=99.76 E-value=5.1e-19 Score=123.37 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=48.0
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-----ChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-----TTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-----~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
++|||||++++||||+|+|++|||||+|. +..+|+||+|||||.|.. .++.++....
T Consensus 82 ~~vLVaTdv~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~-~~~~~~~~~~ 143 (181)
T d1t5la2 82 YDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG-HVIMYADTIT 143 (181)
T ss_dssp CSEEEESCCCSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC-EEEEECSSCC
T ss_pred CCEEEehhHHHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc-eeEeecchhh
Confidence 57999999999999999999999999996 688999999999999864 4444444333
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.75 E-value=4e-19 Score=119.06 Aligned_cols=55 Identities=33% Similarity=0.480 Sum_probs=49.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeC----CCCChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYS----FPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d----~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
.+||||||+++||+| +++++||||| +|.++++|+||+||||| |+.|. ++|+++.|
T Consensus 79 ~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 79 DVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp CEEEEESSSSCSSSC-CCBSEEEECSEETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cceeehhHHHHhccc-cccceEEEEEecCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 369999999999999 9999999865 69999999999999999 99995 77888765
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.72 E-value=2.1e-18 Score=126.40 Aligned_cols=59 Identities=27% Similarity=0.456 Sum_probs=53.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKA 60 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~ 60 (121)
++|||||+++++|||+|+|++||+||+|+++..|+||+||+||.+ +|.++.|+++....
T Consensus 220 ~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 220 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRD 278 (286)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTSHH
T ss_pred CcEEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCCHH
Confidence 579999999999999999999999999999999999999999974 68888888866543
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.7e-17 Score=114.92 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=52.8
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-----ChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-----TTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-----~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||++++||+|+|+|++|||||+|. +..+|+||+||+||.++ |.++++.......+.+.+
T Consensus 82 ~~vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 82 YDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp CSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHH
T ss_pred eEEEEeeeeeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHH
Confidence 47999999999999999999999999776 45889999999999875 788877765554443333
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]
Probab=99.58 E-value=3.3e-16 Score=110.96 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=55.7
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCC-hhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLT-TEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~-~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++|||||++.++|||+|++++||++++|.- ...|.|..||+||.|..|.|++++.+.+....+.+
T Consensus 91 ~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl 156 (206)
T d1gm5a4 91 YDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 156 (206)
T ss_dssp SSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred EEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhh
Confidence 479999999999999999999999999985 66666668999999999999999987665554444
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=2.7e-17 Score=118.57 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=50.2
Q ss_pred CcEEEEe----ccccccCCCCC-ccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccHHHHHHH
Q 038184 1 MYLQVAT----DIAARGLDIPD-VEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNKALAGEL 65 (121)
Q Consensus 1 i~iLV~T----d~~~~GlDi~~-v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~~~~~~i 65 (121)
++||||| ++++||||+|+ |++|||||+|+ |.||+||+||.|+.|.+++++...+......+
T Consensus 70 ~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l 135 (248)
T d1gkub2 70 IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERL 135 (248)
T ss_dssp CSEEEEECC------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTT
T ss_pred CeEEEEeccccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHH
Confidence 4799999 88999999996 99999999994 99999999999999999999887776655443
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.6e-14 Score=101.40 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=53.1
Q ss_pred CcEEEEeccccccCCCCCccEEEE-------eCCCCChhhhhhhheeceeCC--CeeEEEEEEcCccH
Q 038184 1 MYLQVATDIAARGLDIPDVEVVIN-------YSFPLTTEDYVHRIGRTGQAG--KKGVSHPFLTNHNK 59 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~-------~d~P~~~~~y~~r~GR~gR~g--~~g~~i~~~~~~~~ 59 (121)
++|||||+.+++|+|+|....||+ ++.|.++.+|+||+|||||.| ..|.+++++.+.+.
T Consensus 121 i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~ 188 (201)
T d2p6ra4 121 IKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 188 (201)
T ss_dssp CCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred ceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCCh
Confidence 689999999999999999999996 788999999999999999988 48899988876554
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.40 E-value=3e-14 Score=99.16 Aligned_cols=55 Identities=24% Similarity=0.426 Sum_probs=48.6
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCe---eEEEEEEc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKK---GVSHPFLT 55 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~---g~~i~~~~ 55 (121)
++|||||+++++|+|+|.+++||+||+|+++..|+||+||++|.|.. ..++.|+.
T Consensus 139 ~~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 139 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred eeeeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 47899999999999999999999999999999999999999998753 35555554
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.35 E-value=1.6e-13 Score=101.35 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=46.9
Q ss_pred cEEEEeccccc---cCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 2 YLQVATDIAAR---GLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~---GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
++||+|+++++ |+|++.+.+|++||+|.++++|+||+||||| |+.|....+..
T Consensus 98 dvVVaT~~~a~g~~giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~ 153 (299)
T d1a1va2 98 DSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAP 153 (299)
T ss_dssp SEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCS
T ss_pred cEEEEEeehhccCCCCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEec
Confidence 68999999999 6777788899999999999999999999999 88997765553
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=3.8e-11 Score=84.71 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=52.4
Q ss_pred CcEEEEeccccccCCCCCccEEEEeCCCC-ChhhhhhhheeceeCCCeeEEEEEEcCc
Q 038184 1 MYLQVATDIAARGLDIPDVEVVINYSFPL-TTEDYVHRIGRTGQAGKKGVSHPFLTNH 57 (121)
Q Consensus 1 i~iLV~Td~~~~GlDi~~v~~Vi~~d~P~-~~~~y~~r~GR~gR~g~~g~~i~~~~~~ 57 (121)
++|||||.+.+.|+|+|+++++|.++.+. ...++-|-.||+||.+..++|++++.+.
T Consensus 84 ~~ILv~TtvIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 84 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp CCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred cceEEEehhhhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCC
Confidence 47999999999999999999999999986 7888888899999999999999999653
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
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class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]
Probab=99.04 E-value=1e-10 Score=84.26 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=44.3
Q ss_pred cEEEEeccccccCCCCCccEEE----------EeCC----------CCChhhhhhhheeceeCCCeeEEEEEEcCc
Q 038184 2 YLQVATDIAARGLDIPDVEVVI----------NYSF----------PLTTEDYVHRIGRTGQAGKKGVSHPFLTNH 57 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi----------~~d~----------P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~ 57 (121)
++||||+++++|+|++ +++|| +||. |.+..+|+||+||+||.|+.+..+.++..+
T Consensus 226 ~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 226 DFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp SEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSC
T ss_pred hhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCC
Confidence 6899999999999984 44443 4444 567889999999999999998888777643
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.60 E-value=2e-08 Score=74.99 Aligned_cols=48 Identities=10% Similarity=0.231 Sum_probs=44.4
Q ss_pred EEEEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCeeEE
Q 038184 3 LQVATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKGVS 50 (121)
Q Consensus 3 iLV~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~ 50 (121)
+|++|.+.+.|||++.+++||.||+||++..+.|++||+-|.|+...+
T Consensus 174 lLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V 221 (346)
T d1z3ix1 174 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 221 (346)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred eeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCce
Confidence 678999999999999999999999999999999999999999976544
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]
Probab=98.57 E-value=9.1e-09 Score=75.71 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=41.2
Q ss_pred cEEEEeccccccCCCCCccEEEEeCCC-------------------CChhhhhhhheeceeCCCeeEEEEEEc
Q 038184 2 YLQVATDIAARGLDIPDVEVVINYSFP-------------------LTTEDYVHRIGRTGQAGKKGVSHPFLT 55 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~~v~~Vi~~d~P-------------------~~~~~y~~r~GR~gR~g~~g~~i~~~~ 55 (121)
+|||||+++++|+++ +|.+||.+.++ -+..+-.||.||+||.+....++.++.
T Consensus 84 ~~~~~t~~~~~~~~~-~~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 84 DFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp SEEEESSSTTCCTTC-CCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CEEEEechhhhceec-CceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 699999999999999 59999966543 245666899999999876555555554
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.53 E-value=2.3e-08 Score=70.72 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=33.2
Q ss_pred cEE-EEeccccccCCCCCccEEEEeCCCCChhhhhhhheeceeCCCee--EEEEEEcC
Q 038184 2 YLQ-VATDIAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGQAGKKG--VSHPFLTN 56 (121)
Q Consensus 2 ~iL-V~Td~~~~GlDi~~v~~Vi~~d~P~~~~~y~~r~GR~gR~g~~g--~~i~~~~~ 56 (121)
.+| ++|.+.+.|+|++.+++||+||+||++..+.|++||+-|.|+.. .++.|+..
T Consensus 139 ~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~ 196 (244)
T d1z5za1 139 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 196 (244)
T ss_dssp CEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEET
T ss_pred hhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeC
Confidence 455 55688999999999999999999999999999999999998643 34445544
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Bacillus subtilis [TaxId: 1423]
Probab=98.31 E-value=1.1e-06 Score=59.79 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=50.4
Q ss_pred cEEEEeccccccCCCC---Ccc-----EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCcc
Q 038184 2 YLQVATDIAARGLDIP---DVE-----VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHN 58 (121)
Q Consensus 2 ~iLV~Td~~~~GlDi~---~v~-----~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~ 58 (121)
.|.|||++++||.||. .|. |||....|.+..-..|-.||+||-|..|.+..|++-+|
T Consensus 84 ~VtIATNmAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 84 AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ceeehhhHHHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 4899999999999984 233 79999999999999999999999999999999997555
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Translocation ATPase SecA, nucleotide-binding domains
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.69 E-value=0.012 Score=40.38 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=30.1
Q ss_pred EEEEeCCCCChhhhhhhheeceeCCCeeEEEEEEcCccH
Q 038184 21 VVINYSFPLTTEDYVHRIGRTGQAGKKGVSHPFLTNHNK 59 (121)
Q Consensus 21 ~Vi~~d~P~~~~~y~~r~GR~gR~g~~g~~i~~~~~~~~ 59 (121)
|||-..--.+..-=-|=.||+||-|-.|.+..|++-+|.
T Consensus 155 ~VIGTErHeSrRIDnQLRGRsGRQGDPGsSrFflSLeDd 193 (219)
T d1nkta4 155 YVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 193 (219)
T ss_dssp EEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred EEEeccccccccccccccccccccCCCccceeEEeccHH
Confidence 577666666655456777999999999999999986664
