Citrus Sinensis ID: 038190
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ECK2 | 548 | Pentatricopeptide repeat- | yes | no | 0.768 | 0.744 | 0.301 | 9e-62 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.762 | 0.635 | 0.298 | 2e-61 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.762 | 0.672 | 0.294 | 5e-61 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.800 | 0.684 | 0.284 | 2e-59 | |
| Q9FMD3 | 504 | Pentatricopeptide repeat- | no | no | 0.687 | 0.724 | 0.331 | 2e-58 | |
| Q9FLL3 | 527 | Pentatricopeptide repeat- | no | no | 0.753 | 0.759 | 0.306 | 1e-57 | |
| Q9SI78 | 485 | Pentatricopeptide repeat- | no | no | 0.740 | 0.810 | 0.303 | 1e-57 | |
| P0C7R3 | 512 | Pentatricopeptide repeat- | no | no | 0.730 | 0.757 | 0.298 | 2e-57 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.821 | 0.704 | 0.285 | 3e-57 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.762 | 0.638 | 0.276 | 4e-57 |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 238 bits (607), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 242/478 (50%), Gaps = 70/478 (14%)
Query: 41 SNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK 100
S+SVS + + +L K ++ +++LNDA+ F+ M+ +P P + FN LL A+
Sbjct: 44 SSSVSGGDLRERLSK-----TRLRDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKL 98
Query: 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160
K Y I L +++ +G+ D + NI++NCFC VS A LG++L+ + PD VT+
Sbjct: 99 KKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTI 158
Query: 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220
G L+ G C + + ++A L K V +P+++ Y +IID LCK VN F
Sbjct: 159 GSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA----YNAIIDSLCKTKRVNDAFDFFK 214
Query: 221 DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280
+++ +GI P+ Y +L+ C + W DA S ++ P+V+
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK-------------ITPNVI 261
Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340
+Y +++++ K+ V +AKELF +M I PD+V YSSLI+G CL RID+A ++F +
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----------------------- 377
S+GC+ D SYNTLIN + K ++VE+ + L+ EM
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381
Query: 378 ------------MGVRP-------------DNSCILEAAELFRTLHNTKFELDLTVFNCL 412
G+ P DN + +A +F + + +LD+ + +
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441
Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
+ G+CK+ ++ AW LF L G +P++VTYT M+ GLC +G + + L M+++
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/520 (29%), Positives = 247/520 (47%), Gaps = 115/520 (22%)
Query: 59 ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
E +SG V++ +DA+ F MIH +P P + F+ L A+A K Y + L +++
Sbjct: 58 ERLRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELK 117
Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
G+ + +L+I++NCFC+ + AF A+G+I++ + P+ +T LI GLC++G+ +EA
Sbjct: 118 GIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEA 177
Query: 177 ----------------------------SG-------LFTKFVAFDCRPNVIP-----NV 196
SG L K V + C+PN + NV
Sbjct: 178 LELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNV 237
Query: 197 IC--------------------------YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230
+C Y+ IIDGLCK G ++ LF +M+ +GI +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTN 297
Query: 231 AFVYNSLIRVYCCAVNWEDA----------------------------KGNTSAALELHE 262
YN LI +C A W+D +G A ELH+
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357
Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
E ++ PD ++Y S+I+ CK+ +DKA ++ M S+G P++ ++ LI+
Sbjct: 358 EMIHRG------IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411
Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
GYC RIDD +LF + G + DT +YNTLI + ++ K+ A L+ EM+S V P
Sbjct: 412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471
Query: 383 -------------DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
DN +A E+F + +K ELD+ ++N ++ G+C + ++ AW+LF
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531
Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
LP G +P V TY +MI GLC +G + +A L MEE
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/485 (29%), Positives = 237/485 (48%), Gaps = 80/485 (16%)
Query: 59 ENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
E +SG V++ +DA+ F MI +P P + F+ A+A K + + ++L
Sbjct: 58 ERLRSGIVDIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELN 117
Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
G+ + +LNI++NCFC+ A+ LG++++ + PD T LI+GL ++GK +EA
Sbjct: 118 GIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEA 177
Query: 177 SGLFTKFVAFDCRPNV-----IPNVIC--------------------------YASIIDG 205
L + V C+P+V I N IC Y++IID
Sbjct: 178 VVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDS 237
Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA--------------- 250
LC+DG ++ LF +M+ +GI YNSL+R C A W D
Sbjct: 238 LCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 297
Query: 251 -------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297
+G A EL++E + P++++Y ++++ C + +
Sbjct: 298 VITFNVLLDVFVKEGKLQEANELYKEMITRG------ISPNIITYNTLMDGYCMQNRLSE 351
Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357
A + M PD+V ++SLI GYC++ R+DD K+F +I G + + +Y+ L+
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411
Query: 358 SYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFEL 404
+ + K++ A L+ EM+S GV PD N + +A E+F L +K +L
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471
Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
+ ++ +++G+CK ++ AW LF LP G +PNV+TYTVMI GLC +G + +A LL
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILL 531
Query: 465 PDMEE 469
MEE
Sbjct: 532 RKMEE 536
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 154/541 (28%), Positives = 251/541 (46%), Gaps = 116/541 (21%)
Query: 38 SLHSNSVSTVEEKTKLLKYLSENSKSGEVEL--NDALCFFNYMIHMQPTPFMPSFNSLLG 95
S + S+V + + Y E +SG V++ +DA+ F M +P P + F+ L
Sbjct: 22 SCYGRVFSSVSDGKGKVSY-RERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFS 80
Query: 96 ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP 155
+A K Y + L +++ G+ + +L+I++NC C+ +S AF A+G+I++ + P
Sbjct: 81 VVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEP 140
Query: 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI---------------------- 193
D VT LI GLC++G+ +EA L + V +P +I
Sbjct: 141 DTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLI 200
Query: 194 ---------PNVICYASII-----------------------------------DGLCKD 209
PN + Y ++ DGLCKD
Sbjct: 201 DRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKD 260
Query: 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------------- 250
G ++ LF +M+ +G D +Y +LIR +C A W+D
Sbjct: 261 GSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAF 320
Query: 251 ---------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301
+G A ELH+E + + G+ PD ++Y S+I+ CK+ +DKA +
Sbjct: 321 SALIDCFVKEGKLREAEELHKEMI----QRGI--SPDTVTYTSLIDGFCKENQLDKANHM 374
Query: 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
M S+G P++ ++ LI+GYC IDD +LF + G + DT +YNTLI + +
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434
Query: 362 IEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKFELDLTV 408
+ K+E A L+ EM+S VRP DN +A E+F + +K ELD+ +
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494
Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
+N ++ G+C + ++ AW+LF LP G +P+V TY +MI GLC +G + +A L ME
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554
Query: 469 E 469
E
Sbjct: 555 E 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/404 (33%), Positives = 214/404 (52%), Gaps = 39/404 (9%)
Query: 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
++L+D+L F +M+ +P P + F+ LL A++ K Y I L E++ +G+ + +
Sbjct: 60 MKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTC 119
Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
NIL+NCFC+ +S A LG++++ P +VT G L+ G C + +A +F + V
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
+PNV+ Y +IIDGLCK V+ L M+ GI PD YNSLI C +
Sbjct: 180 MGYKPNVV----IYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235
Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
W DA S + +PDV ++ ++I++ K+ V +A+E + +M
Sbjct: 236 RWSDATRMVSCMTKRE-------------IYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282
Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
R + PD+V YS LI G C+ R+D+A ++F + S+GC PD +Y+ LIN Y K +KV
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342
Query: 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425
E + L+ EM GV + NT + L+ G C++ +L A
Sbjct: 343 EHGMKLFCEMSQRGV----------------VRNT------VTYTILIQGYCRAGKLNVA 380
Query: 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
E+F+++ G PN++TY V++ GLC G IEKA +L DM++
Sbjct: 381 EEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 231/477 (48%), Gaps = 77/477 (16%)
Query: 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
++ N+AL F +M+ +P P + F LL +A K + I L + L +G+ D +
Sbjct: 51 LQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTC 110
Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
N+LMNCFC+ A LG++++ F PD+VT LI G C+ + EA + + V
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
+P+V+ Y +IID LCK+G VN LF M+ GI PD +Y SL+ C +
Sbjct: 171 MGIKPDVV----MYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226
Query: 246 NWEDA----KGNTSAALE--------LHEEFVNG----------NGELGVICHPDVLSYC 283
W DA +G T ++ L + FV N + + P++ +Y
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286
Query: 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343
S+IN C + VD+A+++F M+++G PDVV Y+SLI+G+C ++DDA K+F + +
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346
Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEA 390
G +T +Y TLI + ++ K A ++ M+S GV P+ N + +A
Sbjct: 347 GLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKA 406
Query: 391 AELFRTL-----------------------HNTKFELDLTVFNCL--------------- 412
+F + +N K E L VF +
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTII 466
Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
+ G+CK+ ++++A LF LP G +PNVVTYT MI GL EG +A+ L M+E
Sbjct: 467 IQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 224/455 (49%), Gaps = 62/455 (13%)
Query: 60 NSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL 119
++K + L + + F MI +P P + F+ +L +A K Y I L + G+
Sbjct: 42 STKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIG 101
Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179
D S NI++NC C+ A +G++++ + PDVVT+ LI G C + +A L
Sbjct: 102 HDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDL 161
Query: 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239
+K RP+V+ Y +IIDG CK G VN LF M+ G+ DA YNSL+
Sbjct: 162 VSKMEEMGFRPDVV----IYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVA 217
Query: 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299
CC+ W DA L + V + P+V+++ ++I+ K+ +A
Sbjct: 218 GLCCSGRWSDAA-------RLMRDMVMRD------IVPNVITFTAVIDVFVKEGKFSEAM 264
Query: 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359
+L+ +M R + PDV Y+SLI+G C+ GR+D+A+++ + ++GC+PD +YNTLIN +
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
Query: 360 SKIEKVEEALSLYGEMISMGV------------------RPD------------------ 383
K ++V+E L+ EM G+ RPD
Sbjct: 325 CKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTY 384
Query: 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434
N + +A LF + ++ ELD+T +N ++ G+CK + AW+LF+ L
Sbjct: 385 SILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSC 444
Query: 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
G +P+VV+YT MI G C + +K+ L M+E
Sbjct: 445 KGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQE 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 223/453 (49%), Gaps = 65/453 (14%)
Query: 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
+ DA F M+H QP P + F LL A A + Y I S+++ G+ D S
Sbjct: 50 IRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSF 109
Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
IL++CFC+ +S A LG++++ + P +VT G L+ G C+ + +A L V
Sbjct: 110 TILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV- 168
Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
+ PNV+ Y ++IDGLCK+G +N L +M+ +G+ D YN+L+ C +
Sbjct: 169 ---KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSG 225
Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
W DA ++ + +N PDV+++ ++I+ K +D+A+EL+ +M
Sbjct: 226 RWSDA---ARMLRDMMKRSIN----------PDVVTFTALIDVFVKQGNLDEAQELYKEM 272
Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
+ P+ V Y+S+I+G C+ GR+ DA+K F + S+GC P+ +YNTLI+ + K V
Sbjct: 273 IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMV 332
Query: 366 EEALSLYGE-----------------------------------MISMGVRPD--NSCIL 388
+E + L+ M+S V PD CIL
Sbjct: 333 DEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCIL 392
Query: 389 -----------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437
A F + ++ + + +N ++ GLCK+ ++ AWELF +LP G
Sbjct: 393 LHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGV 452
Query: 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
+P+ TYT+MI GLC G +A +L+ M+E+
Sbjct: 453 KPDARTYTIMILGLCKNGPRREADELIRRMKEE 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 165/577 (28%), Positives = 257/577 (44%), Gaps = 141/577 (24%)
Query: 41 SNSVSTVEEKTKLLKYLS---------ENSKSG--EVELNDALCFFNYMIHMQPTPFMPS 89
SN +E+ T LL Y S E ++G ++++NDA+ F MI +P P
Sbjct: 13 SNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPTPID 72
Query: 90 FNSLLGALAGKKYY-------------------------VNFICLSERL----------N 114
FN L A+A K Y +N C ++L
Sbjct: 73 FNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAW 132
Query: 115 TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174
+G PD ++ + L+N FC VS+A + R++ PD+VT+ LI GLC++G+ +
Sbjct: 133 KLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVS 192
Query: 175 EASGLFTKFVAFDCRP-------------------------------NVIPNVICYASII 203
EA L + V + +P N+ +V+ Y+ +I
Sbjct: 193 EALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252
Query: 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA------------- 250
D LCKDG + LF +M+ +GI D Y+SLI C W+D
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNII 312
Query: 251 ---------------KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
+G A EL+ E + PD ++Y S+I+ CK+ +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRG------IAPDTITYNSLIDGFCKENCL 366
Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
+A ++F M S+G PD+V YS LI+ YC R+DD +LF I S+G IP+T +YNTL
Sbjct: 367 HEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTL 426
Query: 356 INSYSKIEKVEEALSLYGEMISMGVRP-------------DNSCILEAAELFRTLHNTKF 402
+ + + K+ A L+ EM+S GV P DN + +A E+F + ++
Sbjct: 427 VLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRM 486
Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
L + ++N ++ G+C + ++ AW LF L G +P+VVTY VMI GLC +G + +A
Sbjct: 487 TLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA-- 544
Query: 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
DM L KM + PD+ T +IL
Sbjct: 545 ---DM------------LFRKMKEDGCTPDDFTYNIL 566
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/506 (27%), Positives = 233/506 (46%), Gaps = 101/506 (19%)
Query: 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS 124
+++L+DA+ F M+ +P P + FN LL A+A K + I L E++ + ++ +
Sbjct: 63 DMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYT 122
Query: 125 LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184
NIL+NCFC+ +S A LG++++ + P +VTL L+ G C + ++A L + V
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 185 AFDCRPNVI-------------------------------PNVICYASIIDGLCKDG--- 210
RP+ I PN++ Y +++GLCK G
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242
Query: 211 ----FVNKVRV----------------------------LFLDMKGRGIYPDAFVYNSLI 238
+NK+ LF +M+ +GI P+ Y+SLI
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302
Query: 239 RVYCCAVNWEDAKGNTSAALE--LHEEFVNGNGELGVICH-------------------- 276
C W DA S +E ++ V N +
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362
Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
PD+ +Y S++N C +DKAK++F M S+ PDVV Y++LI G+C R++D +L
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------- 383
F + G + DT +Y TLI + A ++ +M+S GV PD
Sbjct: 423 FREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCN 482
Query: 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
N + +A E+F + ++ +LD+ ++ +++G+CK+ ++ W+LF L G +PNVVT
Sbjct: 483 NGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVT 542
Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEE 469
Y MI GLC + +++AY LL M+E
Sbjct: 543 YNTMISGLCSKRLLQEAYALLKKMKE 568
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.794 | 0.381 | 1e-105 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.952 | 0.805 | 0.361 | 1e-99 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.911 | 0.8 | 0.356 | 6e-98 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.788 | 0.336 | 7e-89 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.902 | 0.791 | 0.339 | 2e-83 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.849 | 0.777 | 0.324 | 2e-82 | |
| 449444228 | 585 | PREDICTED: pentatricopeptide repeat-cont | 0.873 | 0.793 | 0.346 | 2e-81 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.887 | 0.788 | 0.334 | 7e-79 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.898 | 0.811 | 0.322 | 4e-74 | |
| 147771991 | 586 | hypothetical protein VITISV_022964 [Viti | 0.830 | 0.752 | 0.310 | 2e-69 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 236/618 (38%), Positives = 328/618 (53%), Gaps = 120/618 (19%)
Query: 10 RTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELN 69
RT + K SS + +PIS P SL ++VS ++ +L +L N KSG ++ +
Sbjct: 19 RTTPRCKLSSLFEHPHRPISPG----PISLTKDTVSNAPDRGQLENFLKSNCKSGHIKRS 74
Query: 70 DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILM 129
+A FN++I MQPTP + SFN+LLGA+A K Y + I L +R++ IGL PDF++LNIL+
Sbjct: 75 EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134
Query: 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR 189
NC+C + V LG +LR+ SP+ VT L++GLC+ + +EA+GL K V R
Sbjct: 135 NCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYR 194
Query: 190 PNVI-------------------------------------PNVICYASIIDGLCKDGFV 212
PNV+ PN++CY +IID LCKDG +
Sbjct: 195 PNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLI 254
Query: 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272
+K + LFL+MKGRGI PD Y+S+I C WE AKG L E V+ G
Sbjct: 255 DKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKG-------LFNEMVDE----G 303
Query: 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332
V HP+V+++ +I++LCK +++A L M RG PD Y++LIDG+CL GRIDD
Sbjct: 304 V--HPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD 361
Query: 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP---------- 382
AR LFVS+ES+G D SYN LIN Y K ++ EA LY EM+ + P
Sbjct: 362 ARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLT 421
Query: 383 --------------------------------------DNSCILEAAELFRTLHNTKFEL 404
N+ + EA ELF L N F+
Sbjct: 422 GLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQP 481
Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
+ +FNCL+DGLCK+ ++ A ELF +L G EPNV+TYTVMI GLC G +E A DL
Sbjct: 482 SIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541
Query: 465 PDMEEK------------IR------ECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506
MEEK +R E K +ELL +MA++ PD T+SI+ +LL+KD
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKD 601
Query: 507 ENCHECMNLLPSFLSRNQ 524
E E ++LLP+F ++ Q
Sbjct: 602 EKYREYLHLLPTFPAQGQ 619
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 224/619 (36%), Positives = 326/619 (52%), Gaps = 113/619 (18%)
Query: 1 MPSSSPATSRTAFKVKPSSSLRNSKKPISLNSEN----EPSSLHSNSVSTVEEKTKLLKY 56
+ ++S A + F + ++ N K +++E + +L NS + L ++
Sbjct: 17 LSAASTAKLSSLFTSLHTHAISNLKTSPKISNEQFINFKSKTLPINSTPNTQSDNPLEQF 76
Query: 57 LSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116
L N KSG+ L++AL FFN MIHMQ TP + FN+L GALA KK Y++ I + R+N+I
Sbjct: 77 LEINCKSGDFTLHEALHFFNQMIHMQTTPALSRFNNLFGALAKKKQYLHVISMCGRMNSI 136
Query: 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176
GLL +F+SLNIL+NC C + V + FV G ILRK + P+ T L++GLC++GK EA
Sbjct: 137 GLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEA 196
Query: 177 SGLFTKFVAFDCRPNVI-------------------------------------PNVICY 199
+F FDCRP+ I P V+ Y
Sbjct: 197 VRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSY 256
Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
+ IID LCKDG V + + F++MK +GI+P+ Y SL+ C A WE+AK
Sbjct: 257 SCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAK-------R 309
Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
L E V+ +G L PDV+++ +I +LCK V +A LF M R + P Y+
Sbjct: 310 LFIEMVD-HGLL-----PDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNI 363
Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
LI+GYCL G +D+ +K+F+S+ ++ C D SY+ L+ +Y K +V A+ LY EM+ G
Sbjct: 364 LIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHGAMILYREMMDRG 423
Query: 380 VRP-----------------------------------------DNSCILEAAELFRTLH 398
++P N C+ EA ++F L
Sbjct: 424 IQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLE 483
Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
N KF ++ +FN L++G+C+S +L AWELF +L +P+VVTYT+MI GLC G +
Sbjct: 484 NCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQ 543
Query: 459 KAYDLLPDMEEK------------IRE-CL-----KAIELLHKMAKRYVKPDEITVSILE 500
KAYDL +MEEK +R CL K +ELLHKMA R + PD T+ I+
Sbjct: 544 KAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVM 603
Query: 501 ELLNKDENCHECMNLLPSF 519
++L KDEN HEC+NLLP+F
Sbjct: 604 DILLKDENYHECLNLLPTF 622
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 220/617 (35%), Positives = 321/617 (52%), Gaps = 133/617 (21%)
Query: 9 SRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVEL 68
+ T+ V +SS+RNS SSL ++S S + + + + K+G V
Sbjct: 2 ASTSNTVPSASSIRNSN----------LSSLFTHS-SAIPSPNPQIAFFLRHCKTGNVTA 50
Query: 69 NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
AL FF+ M+ PTP + SFN LL LA K+Y L ++ GL D +LNIL
Sbjct: 51 THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110
Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
+NC C + + + F A ILR+ +SP++VT LI+GLCM+ + +EA+ LF + C
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGC 170
Query: 189 RPNVI-------------------------------------PNVICYASIIDGLCKDGF 211
P+V+ PNVI Y I+DGLCK G
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGR 230
Query: 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGEL 271
++ + LF +MK +G+ P YNSLI +CCA WE++K L +E ++
Sbjct: 231 EDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK-------RLLDEMLDQG--- 280
Query: 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331
PD++++ +I++LCK+ V +AK+L M GI+PD+V Y+SLI+G+C++G ++
Sbjct: 281 ---LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLN 337
Query: 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------- 383
AR+LFVS+ S+GC PD SYN LIN YSK KVEEA+ LY EM+ +G RP+
Sbjct: 338 SARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLL 397
Query: 384 ----------------------------------------NSCILEAAELFRTLHNTKFE 403
N C+ EA +LF L ++ F+
Sbjct: 398 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 457
Query: 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463
L++ NCL+DGLCK+ +L +AWELF+KL G EPNVVTYT+MI G C EG ++KA L
Sbjct: 458 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 517
Query: 464 LPDME---------------------EKIRECLKAIELLHKMAKRYVKPDEITVSILEEL 502
+ ME K+ E ++LLH+MA++ V PD IT SI+ ++
Sbjct: 518 IQKMEANGCTPDIITYNTLMRGFYESNKLEE---VVQLLHRMAQKDVSPDAITCSIVVDM 574
Query: 503 LNKDENCHECMNLLPSF 519
L+KDE EC++LLP F
Sbjct: 575 LSKDEKYQECLHLLPRF 591
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 209/622 (33%), Positives = 313/622 (50%), Gaps = 135/622 (21%)
Query: 17 PSSSLRNSKKPISLNSENEPSSL-------HSNSVSTV---EEKTKLLKYLS---ENSKS 63
PS S + + P+S +S PSS+ H N + E+ LS N K+
Sbjct: 8 PSPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKT 67
Query: 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV 123
G + A FF+ M+ P P + SFN LLG LA +Y L + GL PD
Sbjct: 68 GNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLF 127
Query: 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKF 183
+L+IL NC C + VS+A A+ ILR+ + P+VVT LI+GLCM+ + +EA+ LF +
Sbjct: 128 TLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRM 187
Query: 184 VAFDCRPNVI-------------------------------------PNVICYASIIDGL 206
C PN + P VI Y+ IIDGL
Sbjct: 188 QKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGL 247
Query: 207 CKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266
CK G ++ + LF +MK +G+ PD Y++LI +CCA W+ +K L +E V+
Sbjct: 248 CKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSK-------HLFDEMVD 300
Query: 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326
GV PD++++ +I++LCK+ V +AK+L M RGI+P+++ Y+SLIDG+C+
Sbjct: 301 Q----GV--QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354
Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--- 383
+G ++ AR+LF+S+ S+G PD SY TLIN Y K KV+EA++LY EM+ +G P+
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414
Query: 384 ---------------------------------------------NSCILEAAELFRTLH 398
N C+ EA ELF L
Sbjct: 415 YGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELK 474
Query: 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIE 458
+ F+L++ ++CL+DGLCK+ +L +AWELF+KL + G +P+VVTY +MI G C G ++
Sbjct: 475 SYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534
Query: 459 KAYDLLPDMEE---------------------KIRECLKAIELLHKMAKRYVKPDEITVS 497
A L MEE K+ E +K LLHKM ++ V P+ + +
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIK---LLHKMVQKDVSPNAASCT 591
Query: 498 ILEELLNKDENCHECMNLLPSF 519
I+ ++L KDE + ++LLP F
Sbjct: 592 IVVDMLCKDEKYKKFVDLLPKF 613
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 205/604 (33%), Positives = 293/604 (48%), Gaps = 125/604 (20%)
Query: 1 MPSSSPATSRTAFKVKP--SSSLRNSKKPISLNSENEPSSLHSNSVSTVEEK-------T 51
M S+S + VKP SSSL I ++ + S++H S++ +
Sbjct: 1 MASTSKTVPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQ 60
Query: 52 KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
+ L N K+G + A FF+ M++ PTP + SF LL LA K+Y L
Sbjct: 61 QQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYN 120
Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
++ G+ PD +LNIL+NC C + V + + ILR+ + PD+VT LI+GLCM+
Sbjct: 121 QMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEH 180
Query: 172 KFTEASGLFTKFVAFDCRPNVI-------------------------------------P 194
+ ++A+ LFT+ C PN I P
Sbjct: 181 RISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240
Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
VI Y+ IID LCKD ++ R LF +MK +G+ P Y SLI +CC WE+AK
Sbjct: 241 VVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK--- 297
Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
L E VN GV P+V+++ +I+ LCK+ V +AK+L M RGI+P++
Sbjct: 298 ----RLFNEMVNQ----GV--QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 347
Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
+ Y+SLI+G+CL+G ++ AR+LFVS+ S+GC PD Y LIN Y K KVEEA+ LY
Sbjct: 348 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 407
Query: 375 MISMGVRPD------------------------------------------------NSC 386
M+ +G RPD N C
Sbjct: 408 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 467
Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
+ EA ELF L + +LD+ FNCL+DGLCK+ +L +AWELF+KLP+ +P+VVTY +
Sbjct: 468 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 527
Query: 447 MICGLCIEGGIEKAYDLLPDME------EKI------------RECLKAIELLHKMAKRY 488
MI C G + KA L ME +KI ++ K +ELLH M +R
Sbjct: 528 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 587
Query: 489 VKPD 492
V D
Sbjct: 588 VSLD 591
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 203/625 (32%), Positives = 297/625 (47%), Gaps = 174/625 (27%)
Query: 9 SRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVEL 68
+ T+ V +SS+RNS SSL ++S S + + + + K+G V
Sbjct: 2 ASTSNTVPSASSIRNSNL----------SSLFTHS-SAIPSPNPQIAFFLRHCKTGNVTA 50
Query: 69 NDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNIL 128
AL FF+ M+ PTP + SFN LL LA K+Y L ++ GL D +LNIL
Sbjct: 51 THALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNIL 110
Query: 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188
+NC C + + + F A ILR+ +S
Sbjct: 111 LNCLCNVNRLREGFAAFAGILRRGYS---------------------------------- 136
Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
PN++ Y ++I GLC + +++ LFL M+ G PD Y +LI+ C
Sbjct: 137 -----PNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC------ 185
Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
GN + AL+LH+E +N + C P+V++Y I++ LCK D+AK+LF +MK++
Sbjct: 186 -GTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQ 244
Query: 309 G---------------------------------------------IIPDVVVYSSLIDG 323
G I+PD+V Y+SLI+G
Sbjct: 245 GMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 304
Query: 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
+C++G ++ AR+LFVS+ S+GC PD SYN LIN YSK KVEEA+ LY EM+ +G RP+
Sbjct: 305 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPN 364
Query: 384 ------------------------------------------------NSCILEAAELFR 395
N C+ EA +LF
Sbjct: 365 VITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFT 424
Query: 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG 455
L ++ F+L++ NCL+DGLCK+ +L +AWELF+KL G EPNVVTYT+MI G C EG
Sbjct: 425 ELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREG 484
Query: 456 GIEKAYDLLPDME---------------------EKIRECLKAIELLHKMAKRYVKPDEI 494
++KA L+ ME K+ E ++LLH+MA++ V PD I
Sbjct: 485 QVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEE---VVQLLHRMAQKDVSPDAI 541
Query: 495 TVSILEELLNKDENCHECMNLLPSF 519
T SI+ ++L+KDE EC++LLP F
Sbjct: 542 TCSIVVDMLSKDEKYQECLHLLPRF 566
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 196/566 (34%), Positives = 293/566 (51%), Gaps = 102/566 (18%)
Query: 29 SLNSENEPSSLHSNSVSTVEEKTKL---LKYLSENSKSGEVELNDALCFFNYMIHMQPTP 85
++S N P SLH+ + E+ L L N K G + AL FF+ M+
Sbjct: 40 QISSANHPKSLHA-----LSERISLQHGLPMFIHNCKKGNITSTQALQFFDLMMRS---- 90
Query: 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145
+ SFN LLGALA K+Y L ++++ GL P+F +LNIL+NC C + V + A+
Sbjct: 91 -IISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAM 149
Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
I+R+ + PDVVT LI+GLCM+ + +EA+ LF + C PNV+ Y ++I G
Sbjct: 150 AGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVT----YGTLIKG 205
Query: 206 LCKDGFVNKVRVLFLDM-KGRGIY-----PDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
LC+ G +N L +M G Y P+ F YN +I C W++AK
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAK-------R 258
Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
L E V+ GV PDV+++ ++I++LCK+ +V +AK+ M RGI+PD+ ++S
Sbjct: 259 LFNEMVDQ----GV--RPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTS 312
Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379
LI+G+CL+G +D A++LF+S+ S+G PD SY LI Y K VEEA+ LY EM+ +G
Sbjct: 313 LIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVG 372
Query: 380 VRPD------------------------------------------------NSCILEAA 391
PD N C+ EA
Sbjct: 373 KWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAM 432
Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451
ELF L + +LD+ FNCL+DGLCK+ +L +AWELF+KL + G +P+VVTY +MI G
Sbjct: 433 ELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGF 492
Query: 452 CIEGGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDE 493
C G ++ A L MEE K + + ++LLHKM ++ V
Sbjct: 493 CKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAA 552
Query: 494 ITVSILEELLNKDENCHECMNLLPSF 519
+I+E++++KDE C E +++L F
Sbjct: 553 SIYTIVEDMVSKDEKCREWLDILQRF 578
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 301 bits (770), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 202/604 (33%), Positives = 290/604 (48%), Gaps = 133/604 (22%)
Query: 1 MPSSSPATSRTAFKVKP--SSSLRNSKKPISLNSENEPSSLHSNSVSTVEEK-------T 51
M S+S + VKP SSSL I ++ + S++H S++ +
Sbjct: 1 MASTSKTVPSASSIVKPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTPISFQ 60
Query: 52 KLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSE 111
+ L N K+G + A FF+ M++ PTP + SF LL LA K+Y L
Sbjct: 61 QQLSMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYN 120
Query: 112 RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171
++ G+ PD +LNIL+NC C + V + + ILR+ + PD+VT LI+GLCM+
Sbjct: 121 QMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEH 180
Query: 172 KFTEASGLFTKFVAFDCRPNVI-------------------------------------P 194
+ ++A+ LFT+ C PN I P
Sbjct: 181 RISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKP 240
Query: 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254
VI Y+ IID LCKD ++ R LF +MK +G+ P Y SL+ WE+AK
Sbjct: 241 VVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--------WEEAK--- 289
Query: 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
L E VN GV P+V+++ +I+ LCK+ V +AK+L M RGI+P++
Sbjct: 290 ----RLFNEMVNQ----GV--QPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 339
Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374
+ Y+SLI+G+CL+G ++ AR+LFVS+ S+GC PD Y LIN Y K KVEEA+ LY
Sbjct: 340 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 399
Query: 375 MISMGVRPD------------------------------------------------NSC 386
M+ +G RPD N C
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGC 459
Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446
+ EA ELF L + +LD+ FNCL+DGLCK+ +L +AWELF+KLP+ +P+VVTY +
Sbjct: 460 LFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNI 519
Query: 447 MICGLCIEGGIEKAYDLLPDME------EKI------------RECLKAIELLHKMAKRY 488
MI C G + KA L ME +KI ++ K +ELLH M +R
Sbjct: 520 MIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMMVQRD 579
Query: 489 VKPD 492
V D
Sbjct: 580 VSLD 583
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 185/573 (32%), Positives = 292/573 (50%), Gaps = 96/573 (16%)
Query: 29 SLNSENEPSSLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMP 88
++S N P SLH+ S + + + +L + K+G + + A FF+ M+ +
Sbjct: 40 QISSANNPKSLHA-SPERISFQHGIPMFLHK-CKTGSISVTQAHQFFDLMMRS-----IF 92
Query: 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
SFN LL LA ++Y L ++++ GL PD ++LNIL+NC C + +++ A+ I
Sbjct: 93 SFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGI 152
Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
+R+ + PDVVT LI+GLC++ + EA+ LF + C PNV+ Y ++I GLC
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVT----YGTLIKGLCA 208
Query: 209 DGFVN---KVRVLFLDMKGRGIY---PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
G +N K L+ ++ P+ Y+ +I C NWE+A + L
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEA-------ICLFN 261
Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
E V+ GV P+V+++ +I+ LCK+ V KAK+L M GI+P++ Y+SLI
Sbjct: 262 EMVDQ----GV--QPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIK 315
Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
G+CL+G ++ A++LFVS+ S+G PD SYN LIN Y K KVEEA+ L+ EM+ +G+ P
Sbjct: 316 GFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWP 375
Query: 383 D------------------------------------------------NSCILEAAELF 394
D N I EA +LF
Sbjct: 376 DVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLF 435
Query: 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
L + +LD+ F CL+DGLCK+ +L +AWELF+KL G +P+ + Y+ MI G C +
Sbjct: 436 NELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKK 495
Query: 455 GGIEKAYDLLPDMEE------------------KIRECLKAIELLHKMAKRYVKPDEITV 496
G ++KA L MEE + + K ++LLH+M ++ V PD+
Sbjct: 496 GQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIY 555
Query: 497 SILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
+I+E+++ KDE E ++LL F + L
Sbjct: 556 AIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 588
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 171/551 (31%), Positives = 267/551 (48%), Gaps = 110/551 (19%)
Query: 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
L+DAL FN M+HM P P + F LL ++ K+Y + LS ++++ G+ P+ +LNI
Sbjct: 49 LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNI 108
Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
L+N FC + + AF L +IL+ P++ T LIRGLC++GK E LF K +
Sbjct: 109 LINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEG 168
Query: 188 CRPNVI-------------------------------PNVICYASIIDGLCKDGFVNKVR 216
+PNV+ P+V+ Y SIID LCKD V +
Sbjct: 169 FQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAF 228
Query: 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276
LF +M +GI P F YNSLI C W+ L E VN
Sbjct: 229 NLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA-------LLNEMVNSK------IM 275
Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
P+V+ + +++++LCK+ V +A ++ M RG+ P+VV Y++L+DG+CL +D+A K+
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335
Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVE------------------------------ 366
F ++ +G PD SY+TLIN Y KI+++E
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 395
Query: 367 -----EALSLYGEMISMGVRPD--NSCIL-----------EAAELFRTLHNTKFELDLTV 408
+A++L+ EM++ G PD + CIL EA L + + + + D+ +
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455
Query: 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
+ ++DG+C++ L +A +LF L G PNV TYT+MI GLC +G + +A L +M+
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515
Query: 469 EK----------------IR--ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCH 510
K +R E L+ I+LL +M R D T ++L E+L+ D
Sbjct: 516 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 575
Query: 511 ECMNLLPSFLS 521
+L FL
Sbjct: 576 SVKQILSEFLQ 586
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 531 | ||||||
| TAIR|locus:2024537 | 666 | AT1G64100 [Arabidopsis thalian | 0.751 | 0.599 | 0.319 | 2e-51 | |
| TAIR|locus:2089388 | 507 | AT3G16710 [Arabidopsis thalian | 0.730 | 0.765 | 0.301 | 1.5e-49 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.787 | 0.861 | 0.298 | 7.9e-46 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.726 | 0.654 | 0.294 | 2.7e-45 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.723 | 0.609 | 0.301 | 2.7e-45 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.687 | 0.589 | 0.301 | 5.6e-45 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.636 | 0.616 | 0.293 | 9.1e-45 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.723 | 0.609 | 0.290 | 9.3e-43 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.723 | 0.625 | 0.288 | 2.5e-42 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.725 | 0.612 | 0.289 | 3.2e-42 |
| TAIR|locus:2024537 AT1G64100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
Identities = 141/441 (31%), Positives = 218/441 (49%)
Query: 47 VEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNF 106
+ E L Y+ E +G +E A+ F+ M+ + TP + +FN+L+ L + +
Sbjct: 192 ISEALALFGYMVE---TGFLE---AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEA 245
Query: 107 ICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166
L ++ GL D V+ ++N CKM A L ++ PDVV +I
Sbjct: 246 AALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDR 305
Query: 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226
LC G ++A LF++ + + PNV Y +IDG C G + + L DM R
Sbjct: 306 LCKDGHHSDAQYLFSEML----EKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE 361
Query: 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC-HPDVLSYCSI 285
I PD +N+LI +V +G A +L +E ++ C PD ++Y S+
Sbjct: 362 INPDVLTFNALISA---SVK----EGKLFEAEKLCDEMLHR-------CIFPDTVTYNSM 407
Query: 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
I CK D AK +F M S PDVV ++++ID YC R+D+ +L I G
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMAS----PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463
Query: 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN-SC-IL-----------EAAE 392
+ +T++YNTLI+ + +++ + A L+ EMIS GV PD +C IL EA E
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523
Query: 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
LF + +K +LD +N ++ G+CK ++ AW+LF LP +G EP+V TY VMI G C
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583
Query: 453 IEGGIEKAYDLLPDMEEKIRE 473
+ I A L M++ E
Sbjct: 584 GKSAISDANVLFHKMKDNGHE 604
|
|
| TAIR|locus:2089388 AT3G16710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 126/418 (30%), Positives = 213/418 (50%)
Query: 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
++ NDAL F M+H +P P + F LL +A Y I L E++ +G+ P +
Sbjct: 62 LQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTC 121
Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
NI+M+C C A LG++++ F PD+VT L+ G C + +A LF + +
Sbjct: 122 NIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILG 181
Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
+PNV+ Y ++I LCK+ +N LF M G P+ YN+L+ C
Sbjct: 182 MGFKPNVVT----YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIG 237
Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
W DA L + + E P+V+++ ++I++ K + +AKEL+ M
Sbjct: 238 RWGDAAW-------LLRDMMKRRIE------PNVITFTALIDAFVKVGKLMEAKELYNVM 284
Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
+ PDV Y SLI+G C+ G +D+AR++F +E GC P+ Y TLI+ + K ++V
Sbjct: 285 IQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRV 344
Query: 366 EEALSLYGEMISMGVRPDNS---------CILE----AAELFRTLHNTKFELDLTVFNCL 412
E+ + ++ EM GV + C++ A E+F + + + D+ +N L
Sbjct: 345 EDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVL 404
Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
+DGLC + ++ A +F+ + + + N+VTYT++I G+C G +E A+DL + K
Sbjct: 405 LDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSK 462
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| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 136/455 (29%), Positives = 228/455 (50%)
Query: 24 SKKPISLNSENEPS----SLHSNSVSTVEEKTKLLKYLSENSKSGEVELNDALCFFNYMI 79
S K S+N E E + S + ++ + +K+L S+ +KS +L + F++M
Sbjct: 42 STKRSSMNLEEEIDLFCKMIQSRPLPSIVDFSKVL---SKIAKSKNYDL--VISLFHHME 96
Query: 80 HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139
+ S+N ++ L +V + + ++ G PD V+++ L+N FC+ V
Sbjct: 97 VCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVF 156
Query: 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199
DA + ++ F PDVV +I G C G +A LF + R V + + Y
Sbjct: 157 DAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME----RDGVRADAVTY 212
Query: 200 ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259
S++ GLC G + L DM R I P+ + ++I V+ +G S A++
Sbjct: 213 NSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFV-------KEGKFSEAMK 265
Query: 260 LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319
L+EE PDV +Y S+IN LC VD+AK++ M ++G +PDVV Y++
Sbjct: 266 LYEEMTRR------CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNT 319
Query: 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM- 378
LI+G+C R+D+ KLF + G + DT +YNT+I Y + + + A ++ M S
Sbjct: 320 LINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRP 379
Query: 379 GVRPDNS-----C----ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
+R + C + +A LF + ++ ELD+T +N ++ G+CK + AW+LF
Sbjct: 380 NIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLF 439
Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464
+ L G +P+VV+YT MI G C + +K+ DLL
Sbjct: 440 RSLSCKGLKPDVVSYTTMISGFCRKRQWDKS-DLL 473
|
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| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 123/417 (29%), Positives = 211/417 (50%)
Query: 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN 126
+L+ AL M+ + P + + NSLL + L +++ +G PD V+
Sbjct: 125 QLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 184
Query: 127 ILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
L++ + S+A + R++ K PD+VT G +I GLC +G+ A L K
Sbjct: 185 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME-- 242
Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
+ + +V+ Y +IIDGLCK ++ LF M+ +GI PD F YN LI C
Sbjct: 243 --KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGR 300
Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM- 305
W DA S LE + +N PD++ + ++I++ K+ + +A++L+ +M
Sbjct: 301 WSDASRLLSDMLEKN---IN----------PDLVFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
KS+ PDVV Y++LI G+C R+++ ++F + G + +T +Y TLI+ + +
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDC 407
Query: 366 EEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCL 412
+ A ++ +M+S GV PD N + A +F + +LD+ + +
Sbjct: 408 DNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTM 467
Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
++ LCK+ ++ W+LF L G +PNVVTYT M+ G C +G E+A L +M+E
Sbjct: 468 IEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKE 524
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 126/418 (30%), Positives = 211/418 (50%)
Query: 68 LNDALCFFNYMIHM--QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL 125
++DA+ M+ M QP F +FN+L+ L + L +R+ G PD V+
Sbjct: 167 ISDAVSLVGQMVEMGYQPDSF--TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224
Query: 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185
I++N CK + A L ++ + P VV +I LC +A LFT+
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM-- 282
Query: 186 FDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245
D + + PNV+ Y S+I LC G + L DM R I P+ +++LI +
Sbjct: 283 -DNK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV--- 337
Query: 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305
+G A +L++E + + + PD+ +Y S+IN C +D+AK +F M
Sbjct: 338 ----KEGKLVEAEKLYDEMIKRSID------PDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 306 KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365
S+ P+VV Y++LI G+C R+D+ +LF + G + +T +Y TLI+ + + +
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447
Query: 366 EEALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFELDLTVFNCL 412
+ A ++ +M+S GV PD S +L+ A +F L +K E D+ +N +
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIM 507
Query: 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
++G+CK+ ++ W+LF L G +PNVVTYT M+ G C +G E+A L +M+E+
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 119/395 (30%), Positives = 207/395 (52%)
Query: 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRI 148
+F++L+ + + L +R+ + PD V+++ L+N C VS+A V + R+
Sbjct: 142 TFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRM 201
Query: 149 LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
+ F PD VT G ++ LC G A LF K N+ +V+ Y+ +ID LCK
Sbjct: 202 VEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME----ERNIKASVVQYSIVIDSLCK 257
Query: 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268
DG + LF +M+ +GI D Y+SLI C W+D ++ E + N
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA-------KMLREMIGRN 310
Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
+I PDV+++ ++I+ K+ + +AKEL+ +M +RGI PD + Y+SLIDG+C
Sbjct: 311 ----II--PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----N 384
+ +A ++F + S+GC PD +Y+ LINSY K ++V++ + L+ E+ S G+ P+ N
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 385 SCIL---------EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435
+ +L A ELF+ + + + + L+DGLC + L A E+F+K+ +
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470
+ Y ++I G+C ++ A+ L + +K
Sbjct: 485 RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519
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| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 108/368 (29%), Positives = 189/368 (51%)
Query: 116 IGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175
+G PD V++ L+N FC+ VSDA + +++ + PD+V +I LC + +
Sbjct: 149 LGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVND 208
Query: 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235
A F + R + PNV+ Y ++++GLC + L DM + I P+ Y+
Sbjct: 209 AFDFFKEIE----RKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264
Query: 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295
+L+ + G A EL EE V + + PD+++Y S+IN LC +
Sbjct: 265 ALLDAFV-------KNGKVLEAKELFEEMVR----MSI--DPDIVTYSSLINGLCLHDRI 311
Query: 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355
D+A ++F M S+G + DVV Y++LI+G+C R++D KLF + G + +T +YNTL
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF 402
I + + V++A + +M G+ PD N + +A +F + +
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
+LD+ + ++ G+CK+ ++ AW LF L G +P++VTYT M+ GLC +G + +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491
Query: 463 LLPDMEEK 470
L M+++
Sbjct: 492 LYTKMKQE 499
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 121/416 (29%), Positives = 204/416 (49%)
Query: 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
+++A+ + M P +FN+L+ L + L +R+ G PD V+ +
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 128 LMNCFCKMIGVSD-AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
++N CK G +D AF L ++ + P V+ +I GLC +A LF +
Sbjct: 227 VVNGLCKR-GDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETK 285
Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
RPNV+ Y+S+I LC G + L DM R I PD F +++LI +
Sbjct: 286 GIRPNVVT----YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV---- 337
Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
+G A +L++E V + + P +++Y S+IN C +D+AK++F M
Sbjct: 338 ---KEGKLVEAEKLYDEMVKRSID------PSIVTYSSLINGFCMHDRLDEAKQMFEFMV 388
Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
S+ PDVV Y++LI G+C R+++ ++F + G + +T +YN LI + +
Sbjct: 389 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 448
Query: 367 EALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
A ++ EM+S GV P D C + +A +F L +K E + +N ++
Sbjct: 449 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 508
Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
+G+CK+ ++ W+LF L G +P+VV Y MI G C +G E+A L +M+E
Sbjct: 509 EGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 120/416 (28%), Positives = 205/416 (49%)
Query: 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
+++A+ + M+ M P +F +L+ L + L ER+ G PD V+
Sbjct: 151 ISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGA 210
Query: 128 LMNCFCKMIGVSD-AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186
++N CK G D A L ++ + DVV +I LC +A LFT+
Sbjct: 211 VINGLCKR-GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM--- 266
Query: 187 DCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246
D + + P+V Y+S+I LC G + L DM R I P+ +NSLI +
Sbjct: 267 DNK-GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA---- 321
Query: 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
+G A +L +E + + + P++++Y S+IN C +D+A+++F M
Sbjct: 322 ---KEGKLIEAEKLFDEMIQRSID------PNIVTYNSLINGFCMHDRLDEAQQIFTLMV 372
Query: 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVE 366
S+ +PDVV Y++LI+G+C ++ D +LF + G + +T +Y TLI+ + + +
Sbjct: 373 SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCD 432
Query: 367 EALSLYGEMISMGVRP---------DNSC----ILEAAELFRTLHNTKFELDLTVFNCLV 413
A ++ +M+S GV P D C + +A +F L +K E D+ +N +
Sbjct: 433 NAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMS 492
Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
+G+CK+ ++ W+LF L G +P+V+ Y MI G C +G E+AY L M+E
Sbjct: 493 EGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE 548
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
Identities = 120/415 (28%), Positives = 204/415 (49%)
Query: 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI 127
+++A+ + M M+ P +FN+L+ L + L +R+ G PD +
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 128 LMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187
++N CK + A L ++ + DVV +I LC +A LFT+ D
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM---D 282
Query: 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247
+ + PNV+ Y S+I LC G + L DM R I P+ +++LI +
Sbjct: 283 NK-GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFV----- 336
Query: 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307
+G A +L++E + + + PD+ +Y S+IN C +D+AK +F M S
Sbjct: 337 --KEGKLVEAEKLYDEMIKRSID------PDIFTYSSLINGFCMHDRLDEAKHMFELMIS 388
Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367
+ P+VV Y++LI G+C R+++ +LF + G + +T +YNTLI + +
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448
Query: 368 ALSLYGEMISMGVRPD---NSCILE----------AAELFRTLHNTKFELDLTVFNCLVD 414
A ++ +M+S GV PD S +L+ A +F L +K E D+ +N +++
Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIE 508
Query: 415 GLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469
G+CK+ ++ W+LF L G +PNV+ YT MI G C +G E+A L +M+E
Sbjct: 509 GMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023872001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (660 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 531 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 76/316 (24%), Positives = 134/316 (42%), Gaps = 49/316 (15%)
Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214
+V T G LI G G+ +A G + + NV P+ + + ++I + G V++
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRS----KNVKPDRVVFNALISACGQSGAVDR 560
Query: 215 VRVLFLDMKGRG--IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALE----LHEEFVNGN 268
+ +MK I PD +L++ A G A E +HE + G
Sbjct: 561 AFDVLAEMKAETHPIDPDHITVGALMKACANA-------GQVDRAKEVYQMIHEYNIKGT 613
Query: 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328
E + ++ CS D A ++ DMK +G+ PD V +S+L+D G
Sbjct: 614 PE----VYTIAVNSCSQKGDW------DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663
Query: 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
+D A ++ +G T SY++L+ + S + ++AL LY ++ S+ +RP S
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS--- 720
Query: 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448
N L+ LC+ +L A E+ ++ R G PN +TY++++
Sbjct: 721 -------------------TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 449 CGLCIEGGIEKAYDLL 464
+ + DLL
Sbjct: 762 VASERKDDADVGLDLL 777
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-16
Identities = 93/426 (21%), Positives = 151/426 (35%), Gaps = 107/426 (25%)
Query: 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSL-NILMNCFCKMIGVSDAFVALGR 147
S+N L+G A Y+ +CL R+ G+ PD + +L C G+ D +A GR
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG----GIPD--LARGR 207
Query: 148 -----ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202
++R F DV + LI G A +F + DC I + ++
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC--------ISWNAM 259
Query: 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE 262
I G ++G + LF M+ + PD S+I C + G+ E+H
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-SAC------ELLGDERLGREMHG 312
Query: 263 EFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322
V G DV V +SLI
Sbjct: 313 YVV-----------------------------------------KTGFAVDVSVCNSLIQ 331
Query: 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382
Y +G +A K+F +E++ D S+ +I+ Y K ++AL Y M V P
Sbjct: 332 MYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 383 DNSCILEA-------------AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429
D I +L + V N L++ K + A E+F
Sbjct: 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447
Query: 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYV 489
+ PE +V+++T +I GL + C +A+ +M +
Sbjct: 448 HNI----PEKDVISWTSIIAGLRLN-----------------NRCFEALIFFRQM-LLTL 485
Query: 490 KPDEIT 495
KP+ +T
Sbjct: 486 KPNSVT 491
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 7e-15
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325
PDV++Y ++I+ CK V++A +LF +MK RGI P+V YS LIDG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 1e-14
Identities = 70/294 (23%), Positives = 122/294 (41%), Gaps = 29/294 (9%)
Query: 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197
V+ AF A G + K PD V LI G A + + A + P + P+ I
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA-ETHP-IDPDHI 580
Query: 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAA 257
+++ G V++ + ++ + I VY AVN KG+ A
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNI-------KGTPEVYTIAVNSCSQKGDWDFA 633
Query: 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317
L ++++ + GV PD + + ++++ +DKA E+ D + +GI V Y
Sbjct: 634 LSIYDDMK----KKGVK--PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377
SSL+ A +L+ I+S P S+ N LI + + ++ +AL + EM
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747
Query: 378 MGVRPDN---SCILEAAE----------LFRTLHNTKFELDLTVFNCLVDGLCK 418
+G+ P+ S +L A+E L + +L + C+ GLC
Sbjct: 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 76/326 (23%), Positives = 131/326 (40%), Gaps = 86/326 (26%)
Query: 192 VIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251
V NV + ++IDG + G V K + M+ + + PD V+N+LI
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI------------- 549
Query: 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG-- 309
+ G+ G VD+A ++ +MK+
Sbjct: 550 --------------SACGQSGA---------------------VDRAFDVLAEMKAETHP 574
Query: 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369
I PD + +L+ G++D A++++ I Y +NS S+ + AL
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634
Query: 370 SLYGEMISMGVRPDN---SCILEAA-------ELFRTLHNTK---FELDLTVFNCLVDGL 416
S+Y +M GV+PD S +++ A + F L + + +L ++ L+ G
Sbjct: 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GA 693
Query: 417 C---KSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
C K+W + A EL++ + P V T +I LC EG +
Sbjct: 694 CSNAKNW--KKALELYEDIKSIKLRPTVSTMNALITALC-EG----------------NQ 734
Query: 474 CLKAIELLHKMAKRYVKPDEITVSIL 499
KA+E+L +M + + P+ IT SIL
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361
PDVV Y++LIDGYC G++++A KLF ++ G P+ +Y+ LI+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 4e-13
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242
P+V+ Y ++IDG CK G V + LF +MK RGI P+ + Y+ LI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 42/202 (20%)
Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS--SYNTLINSYSKIEKVE 366
G++ D V +LID Y G I+DAR +F +P+ + ++N+++ Y+ E
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVF------DGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 367 EALSLYGEMISMGVRPDN---SCILEAAELFRTLHNTK----------FELDLTVFNCLV 413
EAL LY EM GV D S ++ L + K F LD+ LV
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
Query: 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473
D K R+ A +F ++PR N++++ +I G G
Sbjct: 368 DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG-----------------R 406
Query: 474 CLKAIELLHKMAKRYVKPDEIT 495
KA+E+ +M V P+ +T
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVT 428
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC 452
D+ +N L+DG CK ++ A +LF ++ + G +PNV TY+++I GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 38/234 (16%)
Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
PDV ++ ++ + + + +E+ + G DV V ++LI Y G + AR +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD---NSCILEAAEL 393
F + CI S+N +I+ Y + + E L L+ M + V PD + ++ A EL
Sbjct: 245 FDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 394 F------RTLH----NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVT 443
R +H T F +D++V N L+ A ++F ++ + V+
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356
Query: 444 YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
+T MI G + LPD KA+E M + V PDEIT++
Sbjct: 357 WTAMISGY--------EKNGLPD---------KALETYALMEQDNVSPDEITIA 393
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 95/384 (24%), Positives = 156/384 (40%), Gaps = 83/384 (21%)
Query: 117 GLLPDFVSLN--ILMNCFCKMIGVSDAFVALGRILRKVFS--PD--VVTLGCLIRGLCMQ 170
G PD +N +LM+ C M+ DA R++F P+ + + G +I GL
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGML--IDA--------RRLFDEMPERNLASWGTIIGGLVDA 202
Query: 171 GKFTEASGLFTKF--VAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228
G + EA LF + D P V+ AS G + G VL G+
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFV-VMLRASAGLGSARAGQQLHCCVLKT-----GVV 256
Query: 229 PDAFVYNSLIRVYCCAVNWEDAK------------------------GNTSAALELHEEF 264
D FV +LI +Y + EDA+ G + AL L+ E
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY 324
+ + D ++ +I + L++ AK+ + G D+V ++L+D Y
Sbjct: 317 RDSGVSI------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384
GR++DAR +F + + I S+N LI Y + +A+ ++ MI+ GV P+
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN- 425
Query: 385 SCILEAAELFRTLHNTKFELDLTVFN-CLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVV 442
H T F L V + C GL + WE+F+ + + +P +
Sbjct: 426 -------------HVT-F---LAVLSACRYSGLSE-----QGWEIFQSMSENHRIKPRAM 463
Query: 443 TYTVMICGLCIEGGIEKAYDLLPD 466
Y MI L EG +++AY ++
Sbjct: 464 HYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 22/72 (30%)
Query: 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406
PD +YNTLI+ Y K KVEEAL L+ EM G++P+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN---------------------VY 39
Query: 407 TVFNCLVDGLCK 418
T ++ L+DGLCK
Sbjct: 40 T-YSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 46/217 (21%), Positives = 85/217 (39%), Gaps = 36/217 (16%)
Query: 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248
+ V P+ + +++++D G ++K + D + +GI Y+SL+ A NW+
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308
A LEL+E+ + + P V + ++I +LC+ + KA E+ +MK
Sbjct: 702 KA-------LELYEDIKS------IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI------------ 356
G+ P+ + YS L+ D L + +G P+ +
Sbjct: 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808
Query: 357 -----------NSYSKIEKVEEALSLYGEMISMGVRP 382
+ + AL +Y E IS G P
Sbjct: 809 LGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 7e-09
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 308 RGIIPDVVVYSSLIDGYCLMGRIDDARKLF 337
+G+ PDVV Y++LIDG C GR+D+A +L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 76/382 (19%), Positives = 132/382 (34%), Gaps = 102/382 (26%)
Query: 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205
G +++ F+ DV LI+ G + EA +F++ + + + + + ++I G
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM---ETK-----DAVSWTAMISG 363
Query: 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265
K+G +K + M+ + PD S++ C G+ ++LHE
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-------GDLDVGVKLHELAE 416
Query: 266 NGNGELGVI-----------------------CHP--DVLSYCSIINSLCKDVLVDKAKE 300
V+ P DV+S+ SII L + +A
Sbjct: 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476
Query: 301 LFLDMKSR----------------------------------GIIPDVVVYSSLIDGYCL 326
F M GI D + ++L+D Y
Sbjct: 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536
Query: 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386
GR++ A F S E D S+N L+ Y K A+ L+ M+ GV PD
Sbjct: 537 CGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD--- 588
Query: 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL-PRYGPEPNVVTYT 445
++T F L+ +S + E F + +Y PN+ Y
Sbjct: 589 ------------------EVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 446 VMICGLCIEGGIEKAYDLLPDM 467
++ L G + +AY+ + M
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 49/163 (30%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN---SCILEAA------ELFRTLH 398
D S+N L+ Y+K +EAL LY M+ GVRPD C+L R +H
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 399 ----NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE 454
FELD+ V N L+ K + SA +F ++PR + +++ MI G E
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGY-FE 265
Query: 455 GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVS 497
G ECL+ +EL M + V PD +T++
Sbjct: 266 NG----------------ECLEGLELFFTMRELSVDPDLMTIT 292
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208
PDVVT LI G C +GK EA LF + + PNV Y+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK----PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 41/240 (17%)
Query: 280 LSYCSIINSLC---KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
LS +++ S+C +D+ D A + ++ G+ D +Y++LI G++D ++
Sbjct: 437 LSTFNMLMSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 337 FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------NSCIL 388
F + + G + ++ LI+ ++ +V +A YG M S V+PD ++C
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 389 EAA--ELFRTLHNTKFEL-----DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE--P 439
A F L K E D L+ + ++ A E+++ + Y + P
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSIL 499
V T V C +G + A + DM++K VKPDE+ S L
Sbjct: 615 EVYTIAVNSCSQ--KGDWDFALSIYDDMKKK-----------------GVKPDEVFFSAL 655
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 17/61 (27%)
Query: 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSI 498
P+VVTY +I G C +G +E+A +L ++M KR +KP+ T SI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEAL-----------------KLFNEMKKRGIKPNVYTYSI 43
Query: 499 L 499
L
Sbjct: 44 L 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-07
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383
+YNTLI+ K +VEEAL L+ EM G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGV 380
+YN+LI+ Y K K+EEAL L+ EM GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 3e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468
G +P+VVTY +I GLC G +++A +LL +ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349
V Y++LIDG C GR+++A +LF ++ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306
PDV++Y ++I+ LC+ VD+A EL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 2e-05
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEM 375
G PD +YNTLI+ + +V+EA+ L EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223
+ P+V+ Y ++IDGLC+ G V++ L +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 120 PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168
PD V+ N L++ +CK V +A + ++ P+V T LI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231
+ Y ++IDGLCK G V + LF +MK RGI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345
V Y+SLI GYC G++++A +LF ++ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314
+Y ++I+ LCK V++A ELF +MK RGI PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 25/187 (13%)
Query: 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS--SYNTL 355
K ++ ++S G PD + + ++ + G + DAR+LF + P+ + S+ T+
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTI 195
Query: 356 INSYSKIEKVEEALSLYGEMISMGVRPDN---------SCILEAAELFRTLHNTKFEL-- 404
I EA +L+ EM G + S L +A + LH +
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255
Query: 405 -DLTVFNC-LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYD 462
T +C L+D K + A +F +P E V + M+ G + G E+A
Sbjct: 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALC 311
Query: 463 LLPDMEE 469
L +M +
Sbjct: 312 LYYEMRD 318
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGI 310
+Y S+I+ CK +++A ELF +MK +G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 153 FSPDVVTLGCLIRGLCMQGKFTEASGLF 180
PDVVT LI GLC G+ EA L
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.04 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.68 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.09 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.07 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.02 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.74 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.66 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.65 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.57 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.57 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.5 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.36 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.36 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.33 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.27 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.24 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.21 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.08 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.02 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.98 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.52 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.46 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.39 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.32 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.31 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.17 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.07 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.96 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.94 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.74 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.34 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.29 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.23 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.7 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.58 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.43 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.86 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.79 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.79 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.64 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.56 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.42 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.26 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.17 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.06 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.05 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.03 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.02 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.47 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.45 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.08 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.08 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.07 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.46 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 91.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.78 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.15 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.99 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.67 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.64 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 89.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.53 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.5 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 88.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.08 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.93 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.92 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 87.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.84 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.29 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.18 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.05 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.89 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.73 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.7 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.56 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 86.43 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.66 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.4 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.3 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.3 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.04 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.42 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 84.35 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.91 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 83.9 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.71 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.55 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.11 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.94 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.79 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.19 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.17 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.12 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 81.07 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.9 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 80.53 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.52 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=506.00 Aligned_cols=440 Identities=18% Similarity=0.261 Sum_probs=384.0
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++++|+++|++|.+.+. .++..+++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4699999999999999885 46777778888888888889999888888863 888899999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.| |..+|+.||.+|++.|++++|.++|++|.
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P----dvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA----NVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999998877664 88899999999999999999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHh--CCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVN--GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.|+.||..+|+.+|.+|++.|++++|.. +|+.|.. .+ +.||..+|+.++.+|++.|++++|.++
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~-------lf~eM~~~~~g------i~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFD-------VLAEMKAETHP------IDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhcCC------CCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888999999999999998888888887 8888876 34 678888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR 381 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 381 (531)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999888888999999999999999999999999999998888899899999999999999999999999999888888
Q ss_pred CC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHH
Q 038190 382 PD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448 (531)
Q Consensus 382 ~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 448 (531)
|+ .+.+++|.++|+.|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88 67888899999998888888999999999999999999999999999998888899999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH------------H-----------------------------hhHHHHHHHHHHHHHc
Q 038190 449 CGLCIEGGIEKAYDLLPDMEEK------------I-----------------------------RECLKAIELLHKMAKR 487 (531)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~------------i-----------------------------~~~~~a~~~~~~~~~~ 487 (531)
.+|++.|++++|.++|++|.+. + +..++|+.+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999888775 1 1236789999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
|+.||..||+.++.++++.+..+.+..+++.|...+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~ 879 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS 879 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC
Confidence 99999999999998888888888888888877665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-62 Score=495.64 Aligned_cols=442 Identities=19% Similarity=0.246 Sum_probs=414.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|.+++|..+|+.|. .|+..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++
T Consensus 419 ~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 419 QRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 358999999999984 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.| |..+|+.||.+|++.|++++|.++|++|..
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P----D~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP----DRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888775 899999999999999999999999999986
Q ss_pred --CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 225 --RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 225 --~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.|+.||..+|+.+|.+|++.|++++|.+ +|+.|.+.+ +.|+..+|+.+|.+|++.|++++|.++|
T Consensus 571 ~~~gi~PD~vTynaLI~ay~k~G~ldeA~e-------lf~~M~e~g------i~p~~~tynsLI~ay~k~G~~deAl~lf 637 (1060)
T PLN03218 571 ETHPIDPDHITVGALMKACANAGQVDRAKE-------VYQMIHEYN------IKGTPEVYTIAVNSCSQKGDWDFALSIY 637 (1060)
T ss_pred hcCCCCCcHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHcC------CCCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6899999999999999999999999888 999999999 8999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 638 ~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P 717 (1060)
T PLN03218 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHH
Q 038190 383 D-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449 (531)
Q Consensus 383 ~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 449 (531)
+ .+.+++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9 788999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHH----c-------------------CCHHHHHHHHHHHHHH------------H------hhHHHHHHHHHHHHHcC
Q 038190 450 GLCI----E-------------------GGIEKAYDLLPDMEEK------------I------RECLKAIELLHKMAKRY 488 (531)
Q Consensus 450 ~~~~----~-------------------g~~~~A~~~~~~~~~~------------i------~~~~~a~~~~~~~~~~~ 488 (531)
.|.+ . +..++|+.+|++|.+. + +....+..+++.|...+
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 6542 1 2246799999999987 1 56777788888887778
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
..|+..+|+++++++.+. .++|..+++.|...|..|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999998442 468999999999999988754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=482.50 Aligned_cols=435 Identities=18% Similarity=0.226 Sum_probs=406.5
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQ-PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++++|+++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 348999999999998865 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|++|. .||..+|++++.+|++.|++++|+++|++|.+.|..| +..+|+.++.+|++.|..+.+.+++..+.
T Consensus 180 lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p----~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 180 LFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA----EPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred HHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC----ChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999996 4799999999999999999999999999999887765 89999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+.|+.||..+|+.++++|++.|++++|.. +|+.|. .+|..+|+.++.+|++.|++++|.++|+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-------vf~~m~----------~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARC-------VFDGMP----------EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHH-------HHHhCC----------CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999988 998884 4678999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.++...
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~ 394 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976443322
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh-CCCCCcHHHHHHHHHHHHH
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR-YGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 788999999999999999999999999999999999999999999999986 6999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHH---------------HhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHH
Q 038190 454 EGGIEKAYDLLPDMEEK---------------IRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~---------------i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|++++|.+++++|... .|+.+.|..+++++.+ ..|+ ..+|..++.+|++.|++++|.++++
T Consensus 475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987533 2889999999999974 4454 6799999999999999999999999
Q ss_pred Hhhhcchhh
Q 038190 518 SFLSRNQEE 526 (531)
Q Consensus 518 ~~~~~~~~~ 526 (531)
.|..++...
T Consensus 553 ~m~~~g~~k 561 (697)
T PLN03081 553 TLKRKGLSM 561 (697)
T ss_pred HHHHcCCcc
Confidence 999998653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-59 Score=487.68 Aligned_cols=426 Identities=23% Similarity=0.329 Sum_probs=320.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|+++.|+++|++| +.||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+++..+.+
T Consensus 133 ~~g~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 556888889999888 5678999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
++..+.+.|+.|+..++++|+.+|++.|+++.|.++|++|.. ||..+||++|.+|++.|++++|.++|++|.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--------RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--------CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999888888899999999999988888888888853 477888888888888888888888888888
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc---------------------------
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH--------------------------- 276 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~--------------------------- 276 (531)
+.|+.||..||+.++.+|++.|+.+.+.+ ++..+.+.+ ..
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~-------l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGRE-------MHGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHH-------HHHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88888888888888888888777776665 444444444 33
Q ss_pred ----CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 277 ----PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 277 ----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 4455555555666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------cccHHHHHHHHHHHHhCCCCCCHHHHHH------------
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPD---------NSCILEAAELFRTLHNTKFELDLTVFNC------------ 411 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 411 (531)
+.|+.+|++.|++++|.++|++|.+.++... .+..++|..+|++|.. ++.||..+|+.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 6666666666666666666655544322111 3344455555555543 24455554444
Q ss_pred -----------------------HHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 412 -----------------------LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 412 -----------------------l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
|+++|++.|++++|.++|+.+ .||..+|+.+|.+|+++|+.++|+++|++|.
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555544 4677888888889999999999999999988
Q ss_pred HH------------------HhhHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 469 EK------------------IRECLKAIELLHKMA-KRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 469 ~~------------------i~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+. .|.+++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|+
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 75 188899999999998 67899999999999999999999999999999986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=479.80 Aligned_cols=439 Identities=22% Similarity=0.298 Sum_probs=378.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|++++|+++|++|...|..||..+|+.++.+|+..+++..+.+++..|.+.|+.||..+++.|+.+|++.|+++.|..
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 55799999999999999999999999999999999888888899999999888888888888888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+.|. .+|..+||++|.+|++.|++++|+++|++|...|..| |..+|+.++.+|++.|+.+.|.+++..|.
T Consensus 244 lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P----d~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 244 VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP----DLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred HHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 888875 4677888888888888888888888888888877665 77777777777777777777777777777
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhc------------------------chHHHHHHHHHHHhCCCCCCccccCCH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKG------------------------NTSAALELHEEFVNGNGELGVICHPDV 279 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 279 (531)
+.|+.||..+|+.++.+|++.|++++|.+ .+++|+++|+.|...+ +.||.
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~Pd~ 389 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN------VSPDE 389 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCCCc
Confidence 77777777777777777777777777665 2356777999999998 89999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999875 4778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-------------cccHHHHHHHHHHHHhCCC------------------------
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPD-------------NSCILEAAELFRTLHNTKF------------------------ 402 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~------------------------ 402 (531)
++.|+.++|+.+|++|.. ++.|+ .+.++.+.+++..+.+.|+
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999988875 47777 2334444444444433332
Q ss_pred ------CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Q 038190 403 ------ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------ 470 (531)
Q Consensus 403 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 470 (531)
.+|..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.
T Consensus 545 ~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999954
Q ss_pred -------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 471 -------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 471 -------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
.|++++|.+++++| .++||..+|.+|+.+|...|+.+.+....+++..-.+
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 18999999999998 4789999999999999999999998888877765443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=454.12 Aligned_cols=410 Identities=18% Similarity=0.224 Sum_probs=385.6
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHH
Q 038190 83 PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (531)
..++..+|+.+|..+.+.|++++|+++|++|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
.++.+|++.|+++.|.++|++|.. ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~--------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE--------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC--------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 999999999999999999999964 589999999999999999999999999999999999999999999999
Q ss_pred HhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038190 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLI 321 (531)
Q Consensus 242 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 321 (531)
+..|....+.. ++..+.+.+ ..+|..+|+.++.+|++.|++++|.++|+.|.+ +|..+|+.++
T Consensus 235 ~~~~~~~~~~~-------l~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li 297 (697)
T PLN03081 235 AGLGSARAGQQ-------LHCCVLKTG------VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSML 297 (697)
T ss_pred hcCCcHHHHHH-------HHHHHHHhC------CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHH
Confidence 99998888877 999999998 899999999999999999999999999999964 5999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------cccHH
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------NSCIL 388 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~ 388 (531)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|+.|+ .|.++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 68899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+|.++|+.|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999864 68999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HH-------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 469 EK-------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 469 ~~-------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
+. -|+.++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++...++
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 74 18899999988765 6789999999999999999999999999988765443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-27 Score=253.41 Aligned_cols=427 Identities=13% Similarity=0.039 Sum_probs=328.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|..+++.+....+. +..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666777777666654433 55667777777777777777777777776654 34555666677777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++.+....+ .+..++..+...+.+.|+.++|...++++... .| .+...+..++..+...|++++|..+++.+.+
T Consensus 522 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 522 FEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NP---QEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc---cchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777776643 35667777777777788888888888777664 23 2556677778888888888888888888776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
. .+.+..+|..+..++...|++++|.. .++.+.... +.+...+..+..++...|++++|..+|+.
T Consensus 596 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 596 A-APDSPEAWLMLGRAQLAAGDLNKAVS-------SFKKLLALQ-------PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred c-CCCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 23466778888888888888777777 666665543 34566777888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 383 (531)
+.+.. +.+..++..+...+...|++++|.++++.+.+.+. .+...+..+...+...|++++|...|+.+...+..+.
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 87753 33577888888888888888888888888887753 3667778888888899999999999988877543333
Q ss_pred ----------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 ----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|...++.+.+... .+...+..+...|...|++++|..+|+++.+.. +.++.+++.+...+..
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 816 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLE 816 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 5777888888888887653 478888999999999999999999999998763 4578888999999999
Q ss_pred cCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 454 EGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
.|+ .+|+.+++++... .|++++|..+++++++.+.. +..++..++.+|.+.|++++|.+++
T Consensus 817 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 817 LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999 8899999988765 38899999999999987744 7888999999999999999999999
Q ss_pred HHhh
Q 038190 517 PSFL 520 (531)
Q Consensus 517 ~~~~ 520 (531)
++|.
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 9874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-26 Score=241.69 Aligned_cols=438 Identities=13% Similarity=0.036 Sum_probs=255.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.++|+++.+..+. +...|..+...+...|++++|++.++.+.+.. +........++..+.+.|++++|..+
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 35777777777777665443 45556666666666666666666666665543 11223333444445555555555555
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++.+.... +.+..++..+..++...|++++|...|+++... .|+ +...+..+...+...|++++|.+.|+.+..
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55554432 223444455555555555555555555554443 221 333444444444444555555554444443
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcch---------------------------HHHHHHHHHHHhCCCCCCccccC
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNT---------------------------SAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~---------------------------~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+. .+..++..+...+...|+.++|...+ ++|+.+++.+.... +.
T Consensus 528 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~ 599 (899)
T TIGR02917 528 IDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-------PD 599 (899)
T ss_pred hCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CC
Confidence 321 13334444444444444444443311 11111555554432 34
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+..+|..+..++...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|...|+++.+.... +..++..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45566666666667777777777776666542 224555666666666677777777777766655322 4566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSA 425 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 425 (531)
.+...|++++|..+++.+.+...... .+++++|...++.+..... +..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776665442221 5667777777777766543 335666677777777777777
Q ss_pred HHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcC
Q 038190 426 WELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRY 488 (531)
Q Consensus 426 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~ 488 (531)
.+.++++.+.. +.+...+..+...|...|++++|++.|+++.+. .++ .+|+.+++++.+..
T Consensus 756 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 77777776642 345667777777777777788887777777665 145 66777777777543
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 489 VKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+.+..++..++.++.+.|++++|...++++...++.
T Consensus 834 -~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 834 -PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 224556677888888888888888888888776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-19 Score=194.44 Aligned_cols=428 Identities=14% Similarity=0.046 Sum_probs=297.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC------------------C-------
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGL------------------L------- 119 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------------------~------- 119 (531)
.|+.++|+..|+++.+..|. +...+..+...+...|++++|+..++++.+... .
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l 238 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAAL 238 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHH
Confidence 36899999999999997766 677888899999999999999999998754321 0
Q ss_pred -------CCHhhH---------------------HHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 120 -------PDFVSL---------------------NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 120 -------~~~~~~---------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
|+...+ .....++...|++++|...|++.++..+. +..++..+..++.+.|
T Consensus 239 ~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 239 QKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 110000 01133456779999999999999987543 7788899999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcHHhH------------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 172 KFTEASGLFTKFVAFDCRPNVIPNVICY------------ASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
++++|+..|++..+..... +....| ......+.+.|++++|...|+++.+... .+...+..+..
T Consensus 318 ~~~eA~~~l~~Al~~~p~~---~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~ 393 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHS---SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGD 393 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCc---cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 9999999999998763221 111112 1224567789999999999999987632 35666777888
Q ss_pred HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH------------------------------------
Q 038190 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC------------------------------------ 283 (531)
Q Consensus 240 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 283 (531)
.+...|++++|+..++++++ .. +.+...+.
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~-------~~-------p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALR-------MD-------PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHH-------hC-------CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999885444443 22 11122222
Q ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 284 ------SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 284 ------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
.+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+..
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al 537 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGL 537 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHH
Confidence 23344555667777777777666552 124455566666677777777777777776654322 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----------------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPD----------------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDG 415 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (531)
.+...++.++|+..++.+......+. .+..++|..+++ ..+.+...+..+...
T Consensus 538 ~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 538 YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHH
Confidence 45566667777666655432111110 334455555554 124466677889999
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHH
Q 038190 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAI 478 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~ 478 (531)
+.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++...+. .|++++|.
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999999852 335778889999999999999999999987754 28899999
Q ss_pred HHHHHHHHcCCC--C---CHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 479 ELLHKMAKRYVK--P---DEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 479 ~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+++++++..... | +...+..+.+.+...|++++|++.+++..
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999864322 2 22466677889999999999999988864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-19 Score=188.83 Aligned_cols=429 Identities=11% Similarity=-0.005 Sum_probs=307.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+.|+.+.+.++.................|++++|++.++++.+.. +-+...+..+...+...|+.++|+..
T Consensus 125 ~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 46999999999999876543222111112222335699999999999999875 55677888899999999999999999
Q ss_pred HHHHHHCCCC--------------------------------CChhhH---------------------HHHHHHHHhcC
Q 038190 145 LGRILRKVFS--------------------------------PDVVTL---------------------GCLIRGLCMQG 171 (531)
Q Consensus 145 ~~~~~~~~~~--------------------------------~~~~~~---------------------~~li~~~~~~g 171 (531)
++++...... |+.... ......+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 9987653210 110000 01234566789
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHH------------HH
Q 038190 172 KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNS------------LI 238 (531)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~------------li 238 (531)
++++|+..|++.... .|+ +..++..+..++.+.|++++|+..|++..+..... ....|.. ..
T Consensus 284 ~~~~A~~~l~~aL~~--~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 999999999999886 453 78899999999999999999999999988753221 1122221 23
Q ss_pred HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYS 318 (531)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (531)
..+.+.|++++|.. .|++..... +.+...+..+...+...|++++|++.|+++.+... .+...+.
T Consensus 359 ~~~~~~g~~~eA~~-------~~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~ 423 (1157)
T PRK11447 359 DAALKANNLAQAER-------LYQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVR 423 (1157)
T ss_pred HHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 34566777777777 777766654 34566788889999999999999999999987631 1233332
Q ss_pred HH------------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 319 SL------------------------------------------IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 319 ~l------------------------------------------l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.+ ...+...|++++|.+.|++..+..+. +...+..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22 23345678888888888888876543 566677788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCH---------HHHHHHH
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDL---------TVFNCLV 413 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~ 413 (531)
..|.+.|++++|...++++.+.. |+ .+..++|+..++.+......++. ..+..+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 88888899999988888887632 33 34556666666655432222221 1233456
Q ss_pred HHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHH
Q 038190 414 DGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLK 476 (531)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~ 476 (531)
..+...|+.++|..+++. .+.+...+..+...+.+.|++++|++.|+++.+. .|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 778889999999988872 2445667778888999999999999999998875 289999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 477 AIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 477 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
|++.++...+.. +.+...+..+..++...|++++|.++++++....
T Consensus 656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999887543 2345667778999999999999999999987654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-21 Score=182.64 Aligned_cols=299 Identities=11% Similarity=0.025 Sum_probs=245.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD---FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a 141 (531)
.|++++|...|.++.+.++. +..+|..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++.|
T Consensus 48 ~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 46899999999999997664 677899999999999999999999999987642222 25678889999999999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (531)
..+|+++.+.. +.+..+++.++..+...|++++|++.++.+...+..+........+..+...+...|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999998864 34678999999999999999999999999987643221000123456788888999999999999999
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 222 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.+.. +.+...+..+...+.+.|++++|.. .++.+...+ ......+++.++.+|...|++++|...
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~-------~~~~~~~~~------p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIE-------ALERVEEQD------PEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHHC------hhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98753 2245677788899999999999888 777776654 222245688899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK---IEKVEEALSLYGEMISM 378 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~ 378 (531)
++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.+++.|.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9999886 466667788999999999999999999998876 5888899888887764 56899999999999987
Q ss_pred CCCCC
Q 038190 379 GVRPD 383 (531)
Q Consensus 379 ~~~~~ 383 (531)
++.|+
T Consensus 348 ~~~~~ 352 (389)
T PRK11788 348 QLKRK 352 (389)
T ss_pred HHhCC
Confidence 77664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=180.55 Aligned_cols=303 Identities=14% Similarity=0.018 Sum_probs=223.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD---VVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 170 (531)
...+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..++..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344567789999999999998875 44566888888899999999999999998887532221 24677888889999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCC
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA----FVYNSLIRVYCCAVN 246 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~ 246 (531)
|++++|+.+|+++... .| .+..+++.++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|+
T Consensus 121 g~~~~A~~~~~~~l~~--~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 121 GLLDRAEELFLQLVDE--GD---FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred CCHHHHHHHHHHHHcC--Cc---chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 9999999999998864 23 36778889999999999999999999998876433221 234455666777777
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
+++|.. .++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|..
T Consensus 196 ~~~A~~-------~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 196 LDAARA-------LLKKALAAD-------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHH-------HHHHHHhHC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 777777 665555433 234556777778888888888888888888765322224567777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+.
T Consensus 262 ~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------------------~P~~ 315 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR------------------------HPSL 315 (389)
T ss_pred cCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------------CcCH
Confidence 888888888888887763 45556677788888888888888888877663 2366
Q ss_pred HHHHHHHHHHHc---CCChHHHHHHHHHhhhCCCCCcHH
Q 038190 407 TVFNCLVDGLCK---SWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 407 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
..+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 316 ~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 316 RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 677777766664 457888888888888766666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-19 Score=175.93 Aligned_cols=323 Identities=8% Similarity=-0.045 Sum_probs=210.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+++.+....+.+ ...+..++.++...|+++.|+..++++.+.. +.+...+..+...+...|+++.|...
T Consensus 55 ~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 347777777777777766663 4444555556666777888888887777664 44556677777777777788888877
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++++.+..+ .+...+..+..++...|++++|...++.+... .|+ +...+..+ ..+...|++++|...++.+..
T Consensus 133 l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~---~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 133 AEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPP---RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCC---CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 777776632 25566777777777778888777777776654 221 23333333 236677777778777777765
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH----HHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK----AKE 300 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~ 300 (531)
....++...+..+..++...|++++|.. .++...... +.+...+..+...+...|++++ |..
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~-------~~~~al~~~-------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQ-------TGESALARG-------LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHH-------HHHHHHhcC-------CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 5332334444445566667777777766 555554433 2345566667777777777764 677
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.|+...+.. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..+|.+.|++++|...|+.+.+.+
T Consensus 272 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 777776653 224566777777777777777777777777765433 44556666777777777777777777776532
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
|+ +...+..+..++...|+.++|...|++..+.
T Consensus 349 -P~---------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 -GV---------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -cc---------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 2233444566677777777777777777663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-18 Score=171.92 Aligned_cols=370 Identities=11% Similarity=-0.021 Sum_probs=288.2
Q ss_pred CHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQ--PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+++.-.-.|+...+.. ..-+..-...++..+.+.|++++|+.+++...... +-+...+..++.++...|+++.|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHH
Confidence 5555555555544321 11233445567778889999999999999998875 44556677777888889999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++++....+. +...+..+...+...|++++|+..+++.... .|+ +...+..+...+...|++++|...++.+..
T Consensus 99 l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 99 VNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSG---NSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999988543 6678888999999999999999999999986 453 678899999999999999999999998876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.... +...+..+ ..+...|++++|.. .++.+.... ..++...+..+..++...|++++|...++.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~-------~~~~~l~~~------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHD-------LARALLPFF------ALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHH-------HHHHHHhcC------CCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5333 23333333 34777888888887 777776654 233444555667888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDD----ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+.+.. +.+...+..+...|...|++++ |...|++..+..+. +...+..+...+.+.|++++|...+++..+.
T Consensus 238 al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-- 313 (656)
T PRK15174 238 ALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT-- 313 (656)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99874 3367788889999999999986 89999999987543 6778899999999999999999999998874
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEK 459 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 459 (531)
.|+ +...+..+..+|...|++++|...|+++.+. .|+.. .+..+..++...|++++
T Consensus 314 ~P~---------------------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 314 HPD---------------------LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred CCC---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHH
Confidence 343 6778888999999999999999999999875 45543 34445678899999999
Q ss_pred HHHHHHHHHHH-----HhhHHHHHHHHHHHH
Q 038190 460 AYDLLPDMEEK-----IRECLKAIELLHKMA 485 (531)
Q Consensus 460 A~~~~~~~~~~-----i~~~~~a~~~~~~~~ 485 (531)
|++.|++..+. -..+++|...+....
T Consensus 371 A~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 371 AESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred HHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 99999998776 244555555555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-18 Score=170.95 Aligned_cols=390 Identities=14% Similarity=0.029 Sum_probs=237.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+++.|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|..
T Consensus 139 ~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred HcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 346888888888888774 3456677777888888888888888888887764 4456677788888888888888887
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH--------------------------
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI-------------------------- 197 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------- 197 (531)
.|..+...+...+... ..++..+.. ..+.......... .|...|...
T Consensus 216 ~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 216 DLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred HHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7766554422212111 111111111 1111111111111 110000000
Q ss_pred ----hHHHHHHH---HHhcCChhHHHHHHHHHhhCC-CCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 198 ----CYASIIDG---LCKDGFVNKVRVLFLDMKGRG-IYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 198 ----~~~~l~~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
.+..+... ....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|.. .++......
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~-------~~~kal~l~ 361 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA-------DLSKSIELD 361 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHcC
Confidence 00001000 012356777888887777653 222 34456666666777777777777 444444433
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 348 (531)
+.....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|++..+.... +
T Consensus 362 -------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~ 432 (615)
T TIGR00990 362 -------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-F 432 (615)
T ss_pred -------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-C
Confidence 2234567777777778888888888888777653 235667777777778888888888888887776432 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...+..+...+.+.|++++|+..|++..+. .|+ +...|+.+..++...|++++|.+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~---------------------~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE---------------------APDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---------------------ChHHHHHHHHHHHHccCHHHHHHH
Confidence 556666777777888888888888777653 232 567778888888888888888888
Q ss_pred HHHhhhCCCCCcH-HH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038190 429 FKKLPRYGPEPNV-VT-------YTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500 (531)
Q Consensus 429 ~~~~~~~g~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 500 (531)
|++..+. .|+. .. ++..+..+...|++++| ..++++.++.. +.+...+..++
T Consensus 490 ~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA-----------------~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 490 FDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEA-----------------ENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHhcC-CCcHHHHHHHH
Confidence 8887763 2221 11 11111122224555555 44445554433 22345788899
Q ss_pred HHHhccCChhHHHhhHHHhhhc
Q 038190 501 ELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.++.+.|++++|..++++....
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999886544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-20 Score=167.87 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=157.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~ 145 (531)
++.+|+.+++.+++..++ ....|-.+..++...|+.+.|.+.|.+.++.+ |+.. ....+...+-..|++++|...|
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 444444444444443333 34444444444444444444444444444332 2222 1222222333334444444444
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+.++..+. =..+|..|...+-..|+.-.|+..|++.... +|. -..+|-.|...|...+.+++|...|.+....
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~---f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN---FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc---chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 444443211 1234444444444445555555544444443 221 2334444444444444555554444444332
Q ss_pred CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 226 GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 226 g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
.| ....+..+...|...|..+.|+..|++|++ . .|+ ..+|+.|..++-..|+..+|.+.|.
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-------~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-------L--------QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHh-------c--------CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 12 223333334444444444444443332222 1 122 2345555555555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+..... .-.....+.|...|...|.++.|..+|....+-... -...++.|...|-+.|+.++|+..|++..+ +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 544431 112334444555555555555555555544443111 123344445555555555555555554443 2221
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYD 462 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 462 (531)
-...|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-.+|+..+|+.
T Consensus 421 ---------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 421 ---------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ---------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 2345666666666666666666666666652 343 3455566666666666666655
Q ss_pred HHHH
Q 038190 463 LLPD 466 (531)
Q Consensus 463 ~~~~ 466 (531)
-|++
T Consensus 478 sY~~ 481 (966)
T KOG4626|consen 478 SYRT 481 (966)
T ss_pred HHHH
Confidence 4443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-19 Score=165.72 Aligned_cols=330 Identities=16% Similarity=0.105 Sum_probs=159.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh-hHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV-TLGCLIRGL 167 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~ 167 (531)
+|..+.+.+-..|++++|+.+++.+++.. +-....|..+..++...|+.+.|.+.|.+.++. .|+.. ....+...+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 34444444555555555555555555442 223445555555555555555555555555544 22222 122233333
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
...|++.+|...+.+.++. .|. -..+|+.|...+...|+...|+..|++.... .|+ .+.+|...|++
T Consensus 195 ka~Grl~ea~~cYlkAi~~--qp~---fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~------f~dAYiNLGnV 261 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIET--QPC---FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN------FLDAYINLGNV 261 (966)
T ss_pred HhhcccchhHHHHHHHHhh--CCc---eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc------chHHHhhHHHH
Confidence 3445555555555444443 221 2334555555555555555555555555442 222 12222223332
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCL 326 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 326 (531)
-+....+++|+.-+....... +-....+..+...|-..|..+.|+..|++..+. .|+ ...|+.|..++-.
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lr-------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLR-------PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcC-------CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHh
Confidence 223333333333444444332 123344444555555555555555555555543 222 3445555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.|++.+|.+.|.+.+..... .....+.|...|...|.+++|..+|....+ +.|. -.
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~---------------------~a 388 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPE---------------------FA 388 (966)
T ss_pred ccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChh---------------------hh
Confidence 55555555555555544222 334444555555555555555555555443 1111 22
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
...+.|...|-+.|++++|+..|++.++ +.|+ ...|+.+...|-..|+.+.|++.+.+.+.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 3456666666666666666666666665 4555 34566666666666666666665555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-18 Score=173.60 Aligned_cols=413 Identities=13% Similarity=0.032 Sum_probs=295.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|+.++|+.++.......+. +...+..+..++...|++++|..+|++.++.. +.+...+..+..++...|++++|...+
T Consensus 29 g~~~~A~~~~~~~~~~~~~-~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQL-PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4899999999999763333 55578999999999999999999999998774 556777888889999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+++++..+. +.. +..+..++...|+.++|+..++++... .|+ +...+..+..++...+..+.|+..++....
T Consensus 107 ~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~---~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 107 KQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ---TQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 999988433 555 888899999999999999999999986 453 666777788888899999999999987664
Q ss_pred CCCCCH------hhHHHHHHHHHhcCChhh-hhcchHHHHHHHHHHHhCCCCCCccccCCHh-hH----HHHHHHHhcCC
Q 038190 226 GIYPDA------FVYNSLIRVYCCAVNWED-AKGNTSAALELHEEFVNGNGELGVICHPDVL-SY----CSIINSLCKDV 293 (531)
Q Consensus 226 g~~p~~------~~~~~li~~~~~~~~~~~-a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~~~~~ 293 (531)
.|+. .....++......+..+. -....++|++.++.+..... ..|+.. .+ ...+..+...|
T Consensus 179 --~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 179 --TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred --CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCCccchHHHHHHHHHHHHHHHhh
Confidence 2331 011222222221111110 00112556667777775421 122221 11 11134556779
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 038190 294 LVDKAKELFLDMKSRGII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP---DTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p---~~~~~~~li~~~~~~~~~~~a~ 369 (531)
++++|...|+.+.+.+.. |+. ....+..+|...|++++|...|+++.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987532 332 22335678999999999999999988754221 1345666777889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD---LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTV 446 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 446 (531)
.+++.+.+.. |... .++. .....|+ ...+..+...+...|++++|+++++++.... +-+...+..
T Consensus 331 ~~l~~~~~~~--P~~~------~~~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 331 TVTAHTINNS--PPFL------RLYG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred HHHHHHhhcC--CceE------eecC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 9999988642 1100 0000 0001223 2356678888999999999999999998752 345778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 447 MICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+...+...|++++|++.+++.... .|+ ...+...+..+.+.|++++|..+++++....+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l-------------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL-------------------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999998887765542 344 567777888888999999999999988776655
Q ss_pred hh
Q 038190 526 ES 527 (531)
Q Consensus 526 ~~ 527 (531)
..
T Consensus 460 ~~ 461 (765)
T PRK10049 460 DP 461 (765)
T ss_pred CH
Confidence 43
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-17 Score=161.65 Aligned_cols=419 Identities=13% Similarity=-0.004 Sum_probs=296.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|+++.|+..|++..+..|.-....+ .++..+...|+.++|+..+++..... .........+...+...|+++.|.+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 467999999999999987665222344 78888888999999999999998211 2223333444668888899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|+++++..+. +...+..++..+...++.++|++.++++... .| +...+..++..+...++..+|++.++++.
T Consensus 124 ly~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp----~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 124 LWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP----TVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc----chHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999998655 5677778889999999999999999999875 33 44455445455545666666999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhc-----------------------------------------chHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKG-----------------------------------------NTSAALELHE 262 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~-----------------------------------------~~~~a~~~~~ 262 (531)
+.. +-+...+..++.++.+.|-...|.+ ..+.|+.-++
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 863 2245555666666665555444433 2334555555
Q ss_pred HHHhCCCCCCccccCC----HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 263 EFVNGNGELGVICHPD----VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 263 ~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
.+...-+. .++. .....-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|..+|.
T Consensus 276 ~l~~~~~~----~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 276 NLLTRWGK----DPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHhhccC----CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55542210 1111 122334566788899999999999999998877667788999999999999999999999
Q ss_pred HHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 038190 339 SIESEGC-----IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT-VFNCL 412 (531)
Q Consensus 339 ~~~~~g~-----~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 412 (531)
.+..... .++......|..+|...+++++|..+++.+.+.. |... ..+. -......||-. .+..+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~--p~~~------~~~~-~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT--PYQV------GVYG-LPGKEPNDDWIEGQTLL 422 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcEE------eccC-CCCCCCCccHHHHHHHH
Confidence 9876531 2233445788999999999999999999998732 2100 0000 00011233333 34556
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~ 492 (531)
+..+...|+..+|++.++.+.... +-|......+...+...|.+.+|++.++.... ..|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~-------------------l~P~ 482 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES-------------------LAPR 482 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------------------hCCc
Confidence 777889999999999999998752 44788888999999999999999887754432 2333
Q ss_pred -HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 493 -EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 493 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
..+....+.++...|++.+|..+++++....+.
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 456667777777888888887777666554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-16 Score=159.40 Aligned_cols=421 Identities=11% Similarity=0.032 Sum_probs=261.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|+.+.+..|. +..++..+...|.+.|++++|+..+++..+.. |+...|..++..+ +++++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 57999999999999998887 68899999999999999999999999999874 4444444433222 899999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH-HHHHHHhcCChhHH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRG--------LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS-IIDGLCKDGFVNKV 215 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 215 (531)
++++.+..+. +..++..+... |.+. ++|.+.++ ....... |+..+... +...|.+.|++++|
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~----~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAAS----PEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCC----CCcHHHHHHHHHHHHHHhCHHHH
Confidence 9999988543 45555555554 5555 44444444 2222112 23443444 48888888999999
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
++++.++.+.+.. +..-...+..+|... ++ +.+.. +++. . ..-+...+..+...|.+.|+
T Consensus 202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~a-------l~~~----~------lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLA-------LQSQ----G------IFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHH-------Hhch----h------cccCHHHHHHHHHHHHHCCC
Confidence 9998888887543 344345555555552 33 32222 3221 1 22234444444444444444
Q ss_pred HHHHHHHHHHHHhCCCC-C-------------------------------------------------------------
Q 038190 295 VDKAKELFLDMKSRGII-P------------------------------------------------------------- 312 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~-~------------------------------------------------------------- 312 (531)
.++|.++++++...-.. |
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 44444444443221000 0
Q ss_pred ---------------------------------------------------------------------CHHHHHHHHHH
Q 038190 313 ---------------------------------------------------------------------DVVVYSSLIDG 323 (531)
Q Consensus 313 ---------------------------------------------------------------------~~~~~~~ll~~ 323 (531)
+.....-++..
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 00011111222
Q ss_pred HHhc---------------------------------------------------------------CCHHHHHHHHHHH
Q 038190 324 YCLM---------------------------------------------------------------GRIDDARKLFVSI 340 (531)
Q Consensus 324 ~~~~---------------------------------------------------------------g~~~~a~~~~~~~ 340 (531)
|.+. |+.++|...+.+.
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~A 502 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQA 502 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 2221 2222333333332
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-----------NSCILEAAELFRTLHNTKFELDLTVF 409 (531)
Q Consensus 341 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (531)
... .|+......+...+...|++++|...|+++......+. .++.++|...++.+.+.... +...+
T Consensus 503 l~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~ 579 (987)
T PRK09782 503 EQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALY 579 (987)
T ss_pred HHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHH
Confidence 222 12222212222333466777777777776544311111 56677777777777765422 33334
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------Hh
Q 038190 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IR 472 (531)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~ 472 (531)
..+...+...|++++|...+++..+. .|+...|..+..++.+.|++++|+..|++.... .|
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 44444555668888888888888874 567788888888899999999999999888776 27
Q ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+.++|+..+++.++... -+...+..+..++...|++++|+..+++.....+.
T Consensus 658 ~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 658 DIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 89999999999987542 35678888999999999999999999887665543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-15 Score=152.87 Aligned_cols=382 Identities=13% Similarity=-0.024 Sum_probs=249.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|+++.|+..++.+++..+. +..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3556677888999999999999999875 578888999999999999999999999999987533 6678888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHH------
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI--YPDAFVYNSLIRV------ 240 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~------ 240 (531)
..|++++|+..|..+...+... +... ..++.-+.. ..+........+... .|...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~----~~~~-~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFR----NEQS-AQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCc----cHHH-HHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 9999999999887766532111 1111 111111111 111111111111100 0111100000000
Q ss_pred -----------------HHhcCC---hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 241 -----------------YCCAVN---WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 241 -----------------~~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
+...|. -..+.+.+++|++.|+.....+.. .+.....+..+...+...|++++|..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~----~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL----GEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC----ChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 000000 001223455666677777765310 12344567777788888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.|++..+.. +-+...|..+...+...|++++|...|+++.+.... +...|..+...|...|++++|...|++..+.
T Consensus 353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-- 428 (615)
T TIGR00990 353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-- 428 (615)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 988887762 223557777788888889999999999888776433 5677888888888889999998888888764
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
.|+ +...+..+..++.+.|++++|+..|++.++. .+-+...|+.+..++...|++++|
T Consensus 429 ~P~---------------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 429 DPD---------------------FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred Ccc---------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence 232 6677888888999999999999999988874 233577888888889999999888
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 461 ~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
++.|++..+. -.. ..+...+. ..+...+..+...|++++|.+++++....++
T Consensus 487 ~~~~~~Al~l----------~p~--~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 487 IEKFDTAIEL----------EKE--TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred HHHHHHHHhc----------CCc--cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 8777654432 000 00000111 1122222334446999999999988655443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-16 Score=158.02 Aligned_cols=361 Identities=12% Similarity=0.006 Sum_probs=266.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|..+|+..++..|. +...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...
T Consensus 62 ~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 62 LKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHH
Confidence 45999999999999886654 56778888899999999999999999998874 55666 88888899999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC--CcHHhHHHHHHHHHh-----cCCh---hH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--PNVICYASIIDGLCK-----DGFV---NK 214 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-----~~~~---~~ 214 (531)
++++.+..+. +...+..+..++...|..+.|+..++.... .|+.. ........++..... .+++ ++
T Consensus 139 l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 139 MTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 9999998644 566677788888899999999999886653 22100 001122223332221 2234 77
Q ss_pred HHHHHHHHhhC-CCCCCHh-hHH----HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHH
Q 038190 215 VRVLFLDMKGR-GIYPDAF-VYN----SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288 (531)
Q Consensus 215 a~~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (531)
|+..++.+.+. ...|+.. .+. ..+.++...+++++|+. .|+.+...+. ..|+. ....+..+
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~-------~~~~ll~~~~-----~~P~~-a~~~la~~ 281 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS-------EYQRLKAEGQ-----IIPPW-AQRWVASA 281 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHhhccCC-----CCCHH-HHHHHHHH
Confidence 88888888854 2233321 111 11334456677777777 8888877651 11332 22225778
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCC---HHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-----------IPD---TSS 351 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----------~p~---~~~ 351 (531)
|...|++++|..+|+.+.+..... .......+..++...|++++|...++.+..... .|+ ...
T Consensus 282 yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 282 YLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH
Confidence 999999999999999987653111 134566677788999999999999999987632 123 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
+..+...+...|+.++|+++++++... .|+ +...+..++..+...|++++|++.+++
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~---------------------n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYN--APG---------------------NQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 556777888999999999999998774 343 788999999999999999999999999
Q ss_pred hhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 432 LPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 432 ~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+. .|+ ...+..++..+...|++++|+.+++++.+.
T Consensus 419 al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 419 AEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9985 455 566667777889999999999999888776
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-15 Score=147.42 Aligned_cols=429 Identities=14% Similarity=0.046 Sum_probs=273.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.+..+..++......++. |+.+.+.|...|.-.|+++.++.+...+...... .-...|..+.++|-..|+++.|...
T Consensus 251 s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 556666666666554443 5556666666666666666666666666544211 1123456666666666666666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-------------------------------
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI------------------------------- 193 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------------- 193 (531)
|.+..+....-.+..+--|...|...|+++.+...|+.+... .|+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 666555432211223334555566666666666666555543 22200
Q ss_pred ----CcHHhHHHHHHHHHhcCChhHHHHHHHH----HhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHH
Q 038190 194 ----PNVICYASIIDGLCKDGFVNKVRVLFLD----MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265 (531)
Q Consensus 194 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~ 265 (531)
.|...|-.+...+....-+ .++.+|.. +...+..+.....|.+...+...|++..|...+..|........
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 2444554444444433322 23555443 33445557777888888889999999999997777776644322
Q ss_pred hCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-VVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
.... + -.+++.+--.+...+...++++.|.+.|..+.+. .|+- ..|..+.-+....+...+|...+......+
T Consensus 487 n~de--~--~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 487 NKDE--G--KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred Cccc--c--ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 2220 0 1233434445777888889999999999999987 3443 233333333334578889999999988754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-------------------------cccHHHHHHHHHHHH
Q 038190 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR-PD-------------------------NSCILEAAELFRTLH 398 (531)
Q Consensus 345 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-------------------------~~~~~~a~~~~~~~~ 398 (531)
..++..++.+...|.+...+..|.+-|....+.... +| ....++|+++|.++.
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 336677777787888888888777766655443222 22 445678888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHH
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAI 478 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~ 478 (531)
+..+. |..+-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|+|..|+++|+...+
T Consensus 640 ~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--------- 708 (1018)
T KOG2002|consen 640 RNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--------- 708 (1018)
T ss_pred hcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 76544 777778888888888888888888888877532 2455777788888888888888777765433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 479 ELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
+.....+..+...|.+++.+.|++.+|.+.+.......+
T Consensus 709 -------kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 709 -------KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred -------HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 334456778899999999999999999988766544433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-15 Score=129.80 Aligned_cols=316 Identities=16% Similarity=0.156 Sum_probs=233.8
Q ss_pred chhHHHhhhhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--CHH-HHHHHHHHHHhCC----
Q 038190 45 STVEEKTKLLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK--YYV-NFICLSERLNTIG---- 117 (531)
Q Consensus 45 ~~~~~~~~l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~-~a~~~~~~m~~~g---- 117 (531)
......+.+++.+++. .+.++.-+|+.|...|...+...-..|++..+-.+ +.. .-.+-|-.|...|
T Consensus 114 ~~V~~E~nL~kmIS~~------EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~ 187 (625)
T KOG4422|consen 114 LQVETENNLLKMISSR------EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST 187 (625)
T ss_pred hhhcchhHHHHHHhhc------ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc
Confidence 3444555677777765 68999999999999887767766666665433222 111 0111121221111
Q ss_pred ---------------CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038190 118 ---------------LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182 (531)
Q Consensus 118 ---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 182 (531)
.+-+..++..+|.++|+--..+.|..+|.+........+..++|.+|.+-.-..+ .+++.+
T Consensus 188 ~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~E 263 (625)
T KOG4422|consen 188 SSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAE 263 (625)
T ss_pred cccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHH
Confidence 2456789999999999999999999999998887778899999999976554433 678889
Q ss_pred HHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNK----VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
|......| |..|||+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+...
T Consensus 264 Misqkm~P----nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as------ 333 (625)
T KOG4422|consen 264 MISQKMTP----NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS------ 333 (625)
T ss_pred HHHhhcCC----chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH------
Confidence 99876665 99999999999999998765 46778899999999999999999999998888755322
Q ss_pred HHHHHHHh-C-CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCC
Q 038190 259 ELHEEFVN-G-NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG----IIPD---VVVYSSLIDGYCLMGR 329 (531)
Q Consensus 259 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~g~ 329 (531)
.++.++.. . |.....+.+.|..-|...+..|....+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 13333332 1 222222234456667888899999999999998876654321 3333 2346777788888999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
.+.....|+.|.-.-.-|+..+...++++..-.|.++-.-++|.+++..|.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 999999999999887788999999999999999999999999988887663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-14 Score=147.63 Aligned_cols=430 Identities=9% Similarity=-0.006 Sum_probs=292.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-cCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSL-LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK-MIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~a~~~ 144 (531)
+.++|...++ .....+.|...+.... ...|.+.|++++|++++.++.+.+ +.+......|..+|.. .++ +.+..+
T Consensus 162 q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al 238 (987)
T PRK09782 162 QLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLAL 238 (987)
T ss_pred hHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHH
Confidence 3455555555 3333344344433333 777888888888888888888876 4455556666667776 355 666666
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCC------------------------------
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVI------------------------------ 193 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~------------------------------ 193 (531)
+.. .+..+..++..++..|.+.|+.++|..+++++...... |...
T Consensus 239 ~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 314 (987)
T PRK09782 239 QSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQY 314 (987)
T ss_pred hch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHH
Confidence 443 22347778888889999999999999888887654222 1111
Q ss_pred -------------------------C----------------------------------cHHhHHHHHHHHHhcCChhH
Q 038190 194 -------------------------P----------------------------------NVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 194 -------------------------~----------------------------------~~~~~~~l~~~~~~~~~~~~ 214 (531)
| +....--+.-...+.|+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHH
Confidence 0 11111111122334566666
Q ss_pred HHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChhhhhcc------------------h---HHHHHHHHHHHhCCCCC
Q 038190 215 VRVLFLDMKGR--GIYPDAFVYNSLIRVYCCAVNWEDAKGN------------------T---SAALELHEEFVNGNGEL 271 (531)
Q Consensus 215 a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~------------------~---~~a~~~~~~~~~~~~~~ 271 (531)
|.++|+..... ...++.....-++..|.+.+......+. . ..+...+......
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---- 470 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD---- 470 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc----
Confidence 66666665541 1122333344566666665542221110 0 0111122222221
Q ss_pred CccccC--CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038190 272 GVICHP--DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT 349 (531)
Q Consensus 272 ~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~ 349 (531)
.++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... .|+.
T Consensus 471 ---~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 471 ---MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred ---CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 134 56677888877776 8888999988877765 466555444555567899999999999998765 3445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------c---ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-----------N---SCILEAAELFRTLHNTKFELDLTVFNCLVDG 415 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 415 (531)
..+..+...+.+.|++++|...++...+.. |+ . ++.++|...++...+..+ +...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 556677888999999999999999998754 43 3 889999999999987654 68889999999
Q ss_pred HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHH
Q 038190 416 LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAI 478 (531)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~ 478 (531)
+.+.|++++|...+++..+.. +-+...++.+..++...|++++|++.|++..+. .|++++|+
T Consensus 619 l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999852 235677888888999999999999999998876 39999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 479 ELLHKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
..+++.++.. |+. .+.....+.+.+..+++.|.+-+++--.-
T Consensus 698 ~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 698 HYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999654 443 66667888888888888888877664433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-14 Score=123.19 Aligned_cols=393 Identities=16% Similarity=0.176 Sum_probs=205.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCcc-hHHHHHHHHHHCCCCCChhhHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC--KMIGVS-DAFVALGRILRKVFSPDVVTLGCL 163 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l 163 (531)
+.+=|.|+.. ...|.++.+.-+|++|.+.|++.+...-..|++..+ ...+.- .-++.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3445565553 456889999999999999998888877666665432 333332 2234444554444 2222333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
+.|++.+ -+|+.. | .+..+|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E~~------P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~ 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETL------P---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY 254 (625)
T ss_pred -----ccccHHH--HHHhhc------C---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh
Confidence 2232222 122221 1 13445566666666666666666666665555555555666655544332
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH----HHHHHHHHHhCCCCCCHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK----AKELFLDMKSRGIIPDVVVYSS 319 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ 319 (531)
... .+ +..+|.... ..||..|+|+++++..+.|+++. |.+++.+|++-|+.|...+|..
T Consensus 255 ~~~----K~-------Lv~EMisqk------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~ 317 (625)
T KOG4422|consen 255 SVG----KK-------LVAEMISQK------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHL 317 (625)
T ss_pred hcc----HH-------HHHHHHHhh------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHH
Confidence 211 22 555555555 55666666666666666665543 3455555566666666666666
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHH----hcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---
Q 038190 320 LIDGYCLMGRIDD-ARKLFVSIE----SEGCIP----DTSSYNTLINSYSKIEKVEEALSLYGEMISMG----VRPD--- 383 (531)
Q Consensus 320 ll~~~~~~g~~~~-a~~~~~~~~----~~g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~--- 383 (531)
+|..+++-++..+ +..+..++. ...++| |...|...+..|....+.+-|.++-.-+.... +.|+
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 6655555554432 222222222 112222 23334444555555555555555444332210 1111
Q ss_pred -------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 384 -------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 384 -------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
...++.-...|+.++-.-+-|+..+...++++..-.|.++-..++|.+++..|..-+......++..
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~ 477 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML 477 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2223344444555554555568888888999999999999999999999988766555555555555
Q ss_pred HHHcC-CH-HHHHHHHHHHHHH-HhhHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHh
Q 038190 451 LCIEG-GI-EKAYDLLPDMEEK-IRECLKAIE-LLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519 (531)
Q Consensus 451 ~~~~g-~~-~~A~~~~~~~~~~-i~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (531)
+++.. +. .-+.+-|.....+ ..++.++.+ .-.+|.+..+ .....+.++-.+.|.|..++|.+++.-+
T Consensus 478 L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 478 LARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 55443 11 1111112111111 111111111 1122333333 3344566666677777777777777665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-13 Score=132.04 Aligned_cols=365 Identities=13% Similarity=0.068 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++++|.+++.++++..|. +...|..|...|-+.|+.+++...+--.-... +-|...|..+.....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6999999999999998876 78899999999999999999998877665554 557789999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++++..+. +...+---...|-+.|+...|..-|.++.......+.......--.+++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999998643 5445555678899999999999999999986321100001112223456677778889999988887652
Q ss_pred -CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCC---------------------CCCccccCCHhhHH
Q 038190 226 -GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG---------------------ELGVICHPDVLSYC 283 (531)
Q Consensus 226 -g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 283 (531)
+-..+...++.++..+.+...++.+.. ....+..... ..+....++... .
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~-------~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALM-------KIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhH-------HHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 233456677888888887777776665 5544444100 000012223333 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
-++-++......+....+.....+.. ..-+...|.-+..+|...|++..|..+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334445555555555666666665 3335677888999999999999999999999987555567889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh-------
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR------- 434 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 434 (531)
.|..+.|.+.|+..+.. .|+ +...-..|...+-+.|+.++|.+.+..+..
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~---------------------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e 518 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APD---------------------NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE 518 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCC---------------------chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence 99999999999998873 344 444455555666666666666666666431
Q ss_pred -CCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 435 -YGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 435 -~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
.+..|+........+.+.+.|+.++-+...
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 223444444445555556666655544333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-13 Score=137.21 Aligned_cols=392 Identities=15% Similarity=0.088 Sum_probs=255.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.|...| ...+.|++..|++.|++..+.. |+. ..+ .++..+...|+.++|+.++++..... +........+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 344444 4568999999999999998774 443 344 88888889999999999999988211 1223333344668
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
|...|++++|+++|+++.+. .|+ +...+..++..+...++.++|++.++++... .|+...+..++..+...++
T Consensus 112 y~~~gdyd~Aiely~kaL~~--dP~---n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKK--DPT---NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 88999999999999999987 553 5677778889999999999999999999875 4555555333333333333
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH------HHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY------SSL 320 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l 320 (531)
..+|+. .++++.... +-+...+..+..++.+.|-...|+++..+-... +.+....+ ..+
T Consensus 185 ~~~AL~-------~~ekll~~~-------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 185 NYDALQ-------ASSEAVRLA-------PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 333444 888888765 345666777788888888777777666543211 11111000 011
Q ss_pred HHHH---H--hcCC---HHHHHHHHHHHHhc-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC--
Q 038190 321 IDGY---C--LMGR---IDDARKLFVSIESE-GCIPDT-SS----YNTLINSYSKIEKVEEALSLYGEMISMGVR-PD-- 383 (531)
Q Consensus 321 l~~~---~--~~g~---~~~a~~~~~~~~~~-g~~p~~-~~----~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 383 (531)
++.- . ...+ .+.|..-++.+... +..|.. .. ..-.+-++...|++.++++.|+.|...+.. |+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 1000 0 1112 23344444444431 111221 11 122344566667777777777777766643 44
Q ss_pred ----------cccHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC-----------
Q 038190 384 ----------NSCILEAAELFRTLHNTK-----FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP----------- 437 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------- 437 (531)
.+..++|..+++.+.... ..++......|..+|...+++++|..+++++.+.-.
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 555667777777665432 123455568899999999999999999999987311
Q ss_pred CC--cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 438 EP--NVV-TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 438 ~p--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
.| |-. .+..++..+...|+..+|++.++++... -+-|......+.+++...|...+|.+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~------------------aP~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST------------------APANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 12 222 2334566677888888887777665442 35578889999999999999999999
Q ss_pred hHHHhhhcchh
Q 038190 515 LLPSFLSRNQE 525 (531)
Q Consensus 515 ~~~~~~~~~~~ 525 (531)
.++.....++.
T Consensus 472 ~~k~a~~l~P~ 482 (822)
T PRK14574 472 ELKAVESLAPR 482 (822)
T ss_pred HHHHHhhhCCc
Confidence 99876665443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-12 Score=124.93 Aligned_cols=439 Identities=13% Similarity=0.078 Sum_probs=196.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK---MIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~~a 141 (531)
.|++..|+.+|..+....|.--....-.+...+.+.|+.+.|+..|.+.++.. +.++.++..|...-.. ...+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 34666666666665554433111222222334445566666666666555443 1122222221111111 1123333
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (531)
...+...-... .-++.+.+.|...|.-.|++..++.+.+.+........ --...|..+.++|-..|++++|...|.+
T Consensus 256 ~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~--~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 256 VQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS--IKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33333333332 12444555555555555555555555555544311100 0122344555555555555555555555
Q ss_pred HhhCCCCCCHh--hHHHHHHHHHhcCChhhhhc-------------------------------chHHHHHHHHHHHhCC
Q 038190 222 MKGRGIYPDAF--VYNSLIRVYCCAVNWEDAKG-------------------------------NTSAALELHEEFVNGN 268 (531)
Q Consensus 222 m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~-------------------------------~~~~a~~~~~~~~~~~ 268 (531)
..+. .++.. .+..+...+...|+++.+.. ..+.|..++.......
T Consensus 333 s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 333 SLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 4433 12221 12233344444444444444 1122222333222221
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM----KSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE- 343 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 343 (531)
+.|...|-.+...+....-+.. +.+|... ...+..+.+...|.+...+...|++.+|...|......
T Consensus 411 -------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 411 -------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred -------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 2233333333333333222221 3333222 12233344444444444444555555555555544432
Q ss_pred --CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCC
Q 038190 344 --GCIPDT------SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTK 401 (531)
Q Consensus 344 --g~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~ 401 (531)
...++. .+--.+...+...++++.|.+.|..+.+.. |. .+.+.+|...++.+.+..
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 111111 111122333334444555555554444321 11 233444444444444332
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-CCCCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHH
Q 038190 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPNVVTYTVMICGLCI------------EGGIEKAYDLLPDME 468 (531)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~ 468 (531)
..++..++.+...+.....+..|.+-|....+. -..+|..+.-+|.+.|.+ .+..++|+++|.++.
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 224555555555566655665665544444331 112455555555554432 233556666666665
Q ss_pred HH----------H-------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 469 EK----------I-------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 469 ~~----------i-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
+. | |++.+|+.+|.++.+... -...+|-.++.+|...|+|-.|+++++....
T Consensus 640 ~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 640 RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 1 677777777777776543 2445566777777777777777777776443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-12 Score=112.67 Aligned_cols=414 Identities=11% Similarity=0.044 Sum_probs=225.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|-....-=..++++..|..+|++.+.-. ..+...|..-+.+=.+......|..+++.++..-+..| ..|--.+-+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHH
Confidence 334333333334455555666666655443 23444455555555555556666666665555422211 2333333333
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
-..|++..|.++|++.... . |+..+|++.|+.=.+-..++.|..+|+..+-. .|++.+|-....--.+.|..
T Consensus 152 E~LgNi~gaRqiferW~~w--~----P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--E----PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--C----CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence 4445566666666655543 2 35556666666555556666666666555542 35555555555555555555
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGYC 325 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 325 (531)
..+...|+.|++.+..= .-+...+.++..-=.+...++.|.-+|+-..+. ++.+ ...|..+...=-
T Consensus 224 ~~aR~VyerAie~~~~d-----------~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDD-----------EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHH
Confidence 55555444444433220 011223333333333444555555555555443 1111 222333332222
Q ss_pred hcCCHHHHHHH--------HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------
Q 038190 326 LMGRIDDARKL--------FVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD-------------- 383 (531)
Q Consensus 326 ~~g~~~~a~~~--------~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 383 (531)
+.|+.....+. ++.+...+. .|-.+|-..+..-...|+.+...++|++.... +.|-
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHH
Confidence 33333222221 222333221 24445555555555555555555555555432 2222
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFN----CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
..+.+.+.++++...+. ++....||. .....-.++.++..|.+++...+. .-|...+|...|..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHH
Confidence 34445555555555542 122333433 334444577888888888887774 57888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccCChhHH
Q 038190 451 LCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYV-KPDEITVSILEELLNKDENCHEC 512 (531)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a 512 (531)
-.+.++++.+..++++..+- +|+.+.|..+|+-.+.... .-....|..+|+--...|.+++|
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 88888888888888887664 5888999999988885432 22245677788888889999999
Q ss_pred HhhHHHhhhcchhhhh
Q 038190 513 MNLLPSFLSRNQEESK 528 (531)
Q Consensus 513 ~~~~~~~~~~~~~~~~ 528 (531)
..+.+++..++.+.+.
T Consensus 527 R~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 527 RALYERLLDRTQHVKV 542 (677)
T ss_pred HHHHHHHHHhcccchH
Confidence 9999998888776553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-12 Score=114.57 Aligned_cols=401 Identities=15% Similarity=0.130 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSF-NSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a 141 (531)
.+.+|+..++-+.+...-|+.-.. -.+...+.+.+.+.+|+++|+-.+..-...+ ..+.+.+...+.+.|+++.|
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 456666666666654444443322 1233445566667777777666554421111 12333344445566777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC--------CcHHhHHH------------
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI--------PNVICYAS------------ 201 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~------------ 201 (531)
+.-|+...+. .|+..+--.|+-++..-|+-++..+.|.+|+..-..++.. |+....+.
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 7777666655 3555544445555555666666666666665432111111 11111100
Q ss_pred ---------------------------------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 038190 202 ---------------------------------------------------IIDGLCKDGFVNKVRVLFLDMKGRGIYPD 230 (531)
Q Consensus 202 ---------------------------------------------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 230 (531)
-...+.+.|+++.|+++++-+.+..-+.-
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 01236677888888888877766522211
Q ss_pred HhhHHHHHHHHHh-c-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 231 AFVYNSLIRVYCC-A-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 231 ~~~~~~li~~~~~-~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
...-+.+-..+.- . .++.+|.. +-+.....+ .-+....+.-.+....+|++++|.+.|++....
T Consensus 454 saaa~nl~~l~flqggk~~~~aqq-------yad~aln~d-------ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQ-------YADIALNID-------RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHH-------HHHHHhccc-------ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 1111222111111 1 12223322 222222211 112222222223334567777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----
Q 038190 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD----- 383 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 383 (531)
.-.-....||+=+ .+-..|++++|.+.|-++...= .-+..+...+...|....++.+|++++-... .+.|+
T Consensus 520 dasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~il 595 (840)
T KOG2003|consen 520 DASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAIL 595 (840)
T ss_pred chHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHH
Confidence 2221222222222 3556677777777776654321 1255566666677777777777777764433 34444
Q ss_pred ---------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHH-H
Q 038190 384 ---------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLC-I 453 (531)
Q Consensus 384 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~-~ 453 (531)
.|+-.+|.+.+..-.. -++-|..+...|..-|....-+++|..+|++..- ++|+..-|..|+..|. +
T Consensus 596 skl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 2333333333332222 2345888999999999999999999999998765 6899999998887665 6
Q ss_pred cCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 038190 454 EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDEN 508 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (531)
.|++.+|.++|++..++ ++-|...+..|++.+...|.
T Consensus 673 sgnyqka~d~yk~~hrk------------------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK------------------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHh------------------CccchHHHHHHHHHhccccc
Confidence 89999998888877654 66677777788888777763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=123.71 Aligned_cols=282 Identities=12% Similarity=-0.013 Sum_probs=170.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCChHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVS-LNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL--GCLIRGLCMQGKFTE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~ 175 (531)
-.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+.... ......+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3699999998888766542 22333 333345557899999999999999876 3444322 244678899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH--------HHHHHHHhcCCh
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN--------SLIRVYCCAVNW 247 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--------~li~~~~~~~~~ 247 (531)
|...++++.+. .|+ +......+...|.+.|++++|.+++..+.+.+..++ ..+. .++.......+.
T Consensus 172 Al~~l~~~~~~--~P~---~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 172 ARHGVDKLLEV--APR---HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE-EHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred HHHHHHHHHhc--CCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999887 453 778899999999999999999999999998765432 2222 111111111111
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM 327 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 327 (531)
+...++++.+... .+.+......+...+...|+.++|..++++..+. .++.... ++.+....
T Consensus 246 -------~~l~~~w~~lp~~-------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~ 307 (398)
T PRK10747 246 -------EGLKRWWKNQSRK-------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKT 307 (398)
T ss_pred -------HHHHHHHHhCCHH-------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccC
Confidence 1111133332221 1234555555666666666666666666665553 3333211 22223344
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHH
Q 038190 328 GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLT 407 (531)
Q Consensus 328 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (531)
++.+++.+..+...+..+. |...+..+...|.+.+++++|.+.|+...+. .|+..
T Consensus 308 ~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------------------------~P~~~ 362 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------------------------RPDAY 362 (398)
T ss_pred CChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------------------CCCHH
Confidence 6666666666665554322 4444555556666666666666666665542 23555
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+..+..++.+.|+.++|.+++++..
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55566666666666666666665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-10 Score=108.70 Aligned_cols=425 Identities=13% Similarity=0.023 Sum_probs=208.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+.++|+-++.+..+.-+. +...|. +|++..-|+.|..++++..+. ++.+..+|.+....=-..|+.+.+..+++
T Consensus 391 ~~~darilL~rAveccp~-s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~ 464 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ-SMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIID 464 (913)
T ss_pred ChHHHHHHHHHHHHhccc-hHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455566667666664333 333333 344445566666666666554 45566666665555556666666666654
Q ss_pred HHH----HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 147 RIL----RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 147 ~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
+.+ ..|+..+...|-.=...|-..|..--+..+....+..|+... .--.+|..-...|.+.+.++-|..+|...
T Consensus 465 rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee--d~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 465 RGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE--DRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc--hhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 432 345555555555555555555555555555555555554432 12335555555555555555555555555
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.+. ++-+...|......--..|..+.... +++...... +-....|-.....+-..|+...|..++
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~A-------llqkav~~~-------pkae~lwlM~ake~w~agdv~~ar~il 607 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEA-------LLQKAVEQC-------PKAEILWLMYAKEKWKAGDVPAARVIL 607 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHH-------HHHHHHHhC-------CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence 443 12233344444333333444444444 333333221 222233333333444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
....+.... +...|-+-+..-.....++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. .|
T Consensus 608 ~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 608 DQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 444443211 3334444444444444444444444444432 223333333333333334444444444444331 22
Q ss_pred C--------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHH
Q 038190 383 D--------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMI 448 (531)
Q Consensus 383 ~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 448 (531)
+ .++++.|...|..=.+ .++-.+..|..|...--+.|.+-.|..++++..-.+ +-+...|-..|
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~I 760 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESI 760 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHH
Confidence 2 1111111111111000 011123334444444444455555555555444332 12444455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH-----------------------------------------------HhhHHHHHHHH
Q 038190 449 CGLCIEGGIEKAYDLLPDMEEK-----------------------------------------------IRECLKAIELL 481 (531)
Q Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~-----------------------------------------------i~~~~~a~~~~ 481 (531)
..-.+.|+.+.|..+..+..+. -.++++|+..|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555444444443 17789999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 482 HKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.+..+.+. -...+|.-+..-+.+.|.-++-.+++.++...
T Consensus 841 ~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 841 ERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 99986652 24478888888999999888888888776544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=123.10 Aligned_cols=302 Identities=12% Similarity=-0.020 Sum_probs=212.6
Q ss_pred HHHHHHHH--HccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 90 FNSLLGAL--AGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 90 ~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
+..+..++ ...|+++.|.+.+.+..+.. |+.. .+-....+..+.|+++.|...+.++.+....+...+.......
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444443 36799999999999887763 4433 3445567788889999999999998876433333345556888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH-HHHHHH---H
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN-SLIRVY---C 242 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~ 242 (531)
+...|+++.|...++.+.+. .|+ +..++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ .
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~--~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEM--APR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 453 6778999999999999999999999999988755 333332 111222 2
Q ss_pred hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH---HHH
Q 038190 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV---YSS 319 (531)
Q Consensus 243 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ 319 (531)
..+..+.+.. .+..+....+. ..+.+...+..+...+...|+.++|.+++++..+.. ||... ...
T Consensus 237 ~~~~~~~~~~-------~L~~~~~~~p~---~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l 304 (409)
T TIGR00540 237 DEAMADEGID-------GLLNWWKNQPR---HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLC 304 (409)
T ss_pred HHHHHhcCHH-------HHHHHHHHCCH---HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHH
Confidence 2222222222 33333332200 012377888889999999999999999999998863 34331 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 320 LIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
........++.+.+.+.++...+.... |. ....++...|.+.|++++|.+.|+.......
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~----------------- 366 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE----------------- 366 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-----------------
Confidence 222234457888899999888776332 34 5566888999999999999999995333222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|+...+..+...+.+.|+.++|.++|++...
T Consensus 367 -----~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 367 -----QLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34777788999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-12 Score=113.22 Aligned_cols=400 Identities=14% Similarity=0.060 Sum_probs=207.5
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPF-MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 141 (531)
+.|++++|+..+.+.++.. |+ ...|.....+|...|+|+++.+.-...++.+ |+ ...+..-..++-..|++++|
T Consensus 127 ~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccHHHH
Confidence 6779999999999998844 45 6677888888889999999998888888663 43 34666666777788888877
Q ss_pred HHHHHHHH-HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 142 FVALGRIL-RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 142 ~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
+.=..-.. -.|+. +..+--.+=+.+-+. |..-.++-.... .+.+-|+....++....+...-..
T Consensus 203 l~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~-----a~~ka~e~~k~n-r~p~lPS~~fi~syf~sF~~~~~~-------- 267 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQ-NASIEPMAERVLKKQ-----AMKKAKEKLKEN-RPPVLPSATFIASYFGSFHADPKP-------- 267 (606)
T ss_pred HHhhhHHHHhhhcc-cchhHHHHHHHHHHH-----HHHHHHHhhccc-CCCCCCcHHHHHHHHhhccccccc--------
Confidence 54222211 11111 111111111111111 111112211111 222234444333333332211000
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhc-----CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCH------hhHHHHHHHH
Q 038190 221 DMKGRGIYPDAFVYNSLIRVYCCA-----VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDV------LSYCSIINSL 289 (531)
Q Consensus 221 ~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~ll~~~ 289 (531)
.+ ..+.......+..++... ..+..+.....+....+..-...+ ..|. .+......-+
T Consensus 268 ~~----~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n-------~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 268 LF----DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN-------EIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc----cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc-------ccchhHHHHHHHHHHhhhhh
Confidence 00 000000000000000000 000011110000000000000000 0010 0111111112
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.-.|+.-.|..-|+...+....++ ..|--+..+|....+.++.++.|++..+.+.. ++.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 234566666666666665533322 22555555566666666677777666665544 5555655555566666666666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMIC 449 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 449 (531)
.-|++.++. .|. +...|..+.-+..+.+.+++++..|++.++. ++.-+..|+....
T Consensus 415 aDF~Kai~L--~pe---------------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAe 470 (606)
T KOG0547|consen 415 ADFQKAISL--DPE---------------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAE 470 (606)
T ss_pred HHHHHHhhc--Chh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHH
Confidence 666666542 222 4455555555556666666666666666654 4445666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHH------------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038190 450 GLCIEGGIEKAYDLLPDMEEK------------------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNK 505 (531)
Q Consensus 450 ~~~~~g~~~~A~~~~~~~~~~------------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 505 (531)
.+...+++++|++.|+..++. -+++..|..++.+.++.+.+ ....|..|......
T Consensus 471 iLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ 549 (606)
T KOG0547|consen 471 ILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ 549 (606)
T ss_pred HHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH
Confidence 666666666666666666554 06677778888888765543 34578889999999
Q ss_pred cCChhHHHhhHHHhh
Q 038190 506 DENCHECMNLLPSFL 520 (531)
Q Consensus 506 ~g~~~~a~~~~~~~~ 520 (531)
.|+.++|+++|++-.
T Consensus 550 ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 550 RGKIDEAIELFEKSA 564 (606)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999999998754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-10 Score=101.90 Aligned_cols=445 Identities=12% Similarity=0.064 Sum_probs=283.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~ 142 (531)
.++++..|+.+|++++..+.. +...|-..+..=.++..+..|..+|++.+..- |-+ ..|...+..=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHH
Confidence 356889999999999886644 78889888888889999999999999998653 332 35556666666779999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
++|+.-.+- +|+...|++.|+.=.+-+.++.|..++++.+-. . |++.+|--....=.++|+...|..+|...
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--H----P~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--H----PKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--c----ccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999988765 799999999999999999999999999998763 3 58889988888888999999999999887
Q ss_pred hhC-CC-CCCHhhHHHHHHHHHhcCChhhhhcchHHHH---------HHHHHHHhC----CCCCCc--------------
Q 038190 223 KGR-GI-YPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL---------ELHEEFVNG----NGELGV-------------- 273 (531)
Q Consensus 223 ~~~-g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~---------~~~~~~~~~----~~~~~~-------------- 273 (531)
.+. |- ..+...+.+...--.++..++.|...|.-|+ +++...... |...|.
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK 313 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence 653 11 0112223333222223333333333222222 122221110 000000
Q ss_pred ---cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-----H---HHhcCCHHHHHHHHHHH
Q 038190 274 ---ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV--VVYSSLID-----G---YCLMGRIDDARKLFVSI 340 (531)
Q Consensus 274 ---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~-----~---~~~~g~~~~a~~~~~~~ 340 (531)
..+-|-.+|-..+..-...|+.+...++|+....+ ++|-. ..|...|. + =....+.+.+.++|+..
T Consensus 314 ~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 01334556666666666777888888888777754 44421 11111111 1 12356777777777777
Q ss_pred HhcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHhCCCCCC
Q 038190 341 ESEGCIPDTSSYNTLINS----YSKIEKVEEALSLYGEMISMGVRPD-----------NSCILEAAELFRTLHNTKFELD 405 (531)
Q Consensus 341 ~~~g~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~~ 405 (531)
++. ++-...||.-+--. -.++.+...|.+++........++. .+.++.+..+++...+.++. |
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~ 470 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-N 470 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-h
Confidence 663 12233344333322 2456677777777766654322222 45667777777777777654 7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------H------
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------I------ 471 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------i------ 471 (531)
..+|......-...|+.+.|..+|+-++... +..-...|.+.|+--...|.+++|..+++.+.+. |
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 7888888888888899999999998887631 1223456777777777888999999998888776 0
Q ss_pred -------------------hhHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 472 -------------------RECLKAIELLHKMAKR--YVKPDE---ITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 472 -------------------~~~~~a~~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.....|..+|+..... ...|-. ..+..+...-...|...+...+-.+||..
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~ 625 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKK 625 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHH
Confidence 2567788888776532 222221 12223333334456555555555555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=131.85 Aligned_cols=193 Identities=19% Similarity=0.192 Sum_probs=75.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSY 359 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~ 359 (531)
.+..++.. ...+++++|.++++...+. .++...+..++..+...++++++..+++.+.... ...+...|..+...+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred cccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34444444 4556666666655554433 2344445555556666666666666666654322 223455555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.|+.++|.+.+++..+.. |+ |....+.++..+...|+.+++..+++...+.. +.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~--P~---------------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELD--PD---------------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH---TT----------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred HHcCCHHHHHHHHHHHHHcC--CC---------------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 66666666666666665531 21 45566666666666666666666666655432 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
|+..+..+..+|...|+.++|+..|++..+. .+.|+.+...+.+++...|+.++|.++.++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------------------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKL------------------NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH------------------STT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHHhccccccccccccccccccc------------------cccccccccccccccccccccccccccccc
Confidence 4455566666666666666665555543332 133555666666666666666666666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-15 Score=134.08 Aligned_cols=262 Identities=15% Similarity=0.054 Sum_probs=101.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
.+...+.+.|++++|++++++..... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 45677778889999999886654443 2345555666666777788899999999988877644 56667777776 688
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccc------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 88888888887765431 255667778888888899999998888876532 34567778888888888888888
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 329 (531)
|.. .++...... +.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+
T Consensus 165 A~~-------~~~~al~~~-------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 165 ALR-------DYRKALELD-------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHH-------HHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-
T ss_pred HHH-------HHHHHHHcC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc
Confidence 888 444444432 3356678888888888999888888887776653 4455677888888889999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
.++|...|++..+.... |......+..++...|+.++|..+..+..+
T Consensus 230 ~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 99999999998876433 777778888899999999999888776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-11 Score=115.89 Aligned_cols=369 Identities=14% Similarity=0.052 Sum_probs=257.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
+...|++++|.+++.+.++.. +.+...|..|...|-+.|+.+++...+-.+-...+. |...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 334499999999999999886 667889999999999999999999888776665543 668999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH----HHHHHHHhcCChhhhhc
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN----SLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~~~~~~a~~ 252 (531)
.-.|.+.++. .| ++...+-.-...|-+.|+...|.+-|.++.....+.|..-+. .+++.+...++-+.|.+
T Consensus 227 ~~cy~rAI~~--~p---~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 227 RYCYSRAIQA--NP---SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHhc--CC---cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999987 45 255555666778999999999999999998864322322222 23445555555555555
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--------------------
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-------------------- 312 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------- 312 (531)
.++....... -..+...++.++..+.+...++.|......+......+
T Consensus 302 -------~le~~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 302 -------ALEGALSKEK-----DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred -------HHHHHHhhcc-----ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 5555544221 23455678888999999999999998888776622222
Q ss_pred -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 313 -------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 313 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+...+ .++-++......+....+...+.+.. +.-+...|.-+..+|...|++..|+.+|..+......-
T Consensus 370 ~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~- 447 (895)
T KOG2076|consen 370 VGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ- 447 (895)
T ss_pred CCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-
Confidence 22221 11222233333344444444444444 33356678888889999999999999998887642221
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYD 462 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~ 462 (531)
+...|--+..+|...|.+++|.+.|+..+.. .|+ ...--.|...+.+.|+.++|.+
T Consensus 448 ---------------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 448 ---------------------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALE 504 (895)
T ss_pred ---------------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHH
Confidence 5678888999999999999999999998874 444 3444566777888999999888
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 463 LLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 463 ~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
.+..+... +.+ .....+..|+..........|...|+.++=.+....
T Consensus 505 tL~~~~~~--D~~-------~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 505 TLEQIINP--DGR-------NAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHhcccCC--Ccc-------chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88764311 000 112234556666677788888888888875444333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.9e-12 Score=118.26 Aligned_cols=285 Identities=9% Similarity=0.028 Sum_probs=218.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHccCCcchHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN--ILMNCFCKMIGVSDAF 142 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~ 142 (531)
.|+++.|.+.+....+....| ...|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 579999998888776543332 223333345557999999999999999875 45654333 3366888999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH------HhHHHHHHHHHhcCChhHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV------ICYASIIDGLCKDGFVNKVR 216 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~ 216 (531)
..++.+.+..+. +..++..+...|.+.|++++|.+++..+.+....+ +.. .+|..++.......+.+...
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~---~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD---EEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988744 77888999999999999999999999999865432 121 23444455445556667777
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 217 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
++++.+... .+.+......+...+...|+.++|.. +++...+.. ++... .++.+....++.+
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~-------~L~~~l~~~--------~~~~l--~~l~~~l~~~~~~ 311 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ-------IILDGLKRQ--------YDERL--VLLIPRLKTNNPE 311 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH-------HHHHHHhcC--------CCHHH--HHHHhhccCCChH
Confidence 777776543 34477788889999999999999999 666666533 44422 2344455669999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++-.
T Consensus 312 ~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 312 QLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988773 346677889999999999999999999999986 5889999999999999999999999998765
Q ss_pred h
Q 038190 377 S 377 (531)
Q Consensus 377 ~ 377 (531)
.
T Consensus 389 ~ 389 (398)
T PRK10747 389 M 389 (398)
T ss_pred h
Confidence 4
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-11 Score=107.75 Aligned_cols=400 Identities=13% Similarity=0.035 Sum_probs=259.2
Q ss_pred CHHHHHHHHHHHHH---cCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 67 ELNDALCFFNYMIH---MQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.....+..+++-.+ .+...|...+-...-.+.+.|....|++.|...+..- +-.=..|..|...+ .+.+
T Consensus 141 ~~~~~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e---- 212 (559)
T KOG1155|consen 141 RINSELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE---- 212 (559)
T ss_pred hhhhHHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----
Confidence 44445544444333 3344455444444555668899999999998887542 22333444333333 2222
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 144 ALGRILRKVFSPD-VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
........+...+ ...--.+..++-...+.++++.-.+.....|... +...-+-...+.-...++++|+.+|+++
T Consensus 213 ~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~----~~~i~~~~A~~~y~~rDfD~a~s~Feei 288 (559)
T KOG1155|consen 213 ILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPN----SMYIKTQIAAASYNQRDFDQAESVFEEI 288 (559)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----cHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 2223322221111 1111234566777778888888888887776543 3444444444556678899999999998
Q ss_pred hhCCC--CCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 223 KGRGI--YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 223 ~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
.+... --|..+|+.++-.-....+ +. .+.+-...- .+-...|...+.+.|.-.++.++|..
T Consensus 289 ~knDPYRl~dmdlySN~LYv~~~~sk----Ls-------~LA~~v~~i------dKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 289 RKNDPYRLDDMDLYSNVLYVKNDKSK----LS-------YLAQNVSNI------DKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhcCCCcchhHHHHhHHHHHHhhhHH----HH-------HHHHHHHHh------ccCCccceeeehhHHHHHHhHHHHHH
Confidence 87621 1166777776643322111 11 111111111 23345678888888888889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+|+...+.+.. ....|+.+.+-|....+...|..-++...+-++. |-..|-.|.++|.-.+.+.-|+-.|++..+ .
T Consensus 352 YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~ 427 (559)
T KOG1155|consen 352 YFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALE--L 427 (559)
T ss_pred HHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--c
Confidence 99988887422 4566777778899999999999999998887654 888889999999999999999999988876 4
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
+|+ |...|.+|..+|.+.++.++|.+.|.+....| ..+...+..+...|-+.++..+|
T Consensus 428 kPn---------------------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 428 KPN---------------------DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred CCC---------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 554 88899999999999999999999999988866 33667888899999999999999
Q ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 461 YDLLPDMEEKI-------RECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 461 ~~~~~~~~~~i-------~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
...|++..+.. ....+|+..+..-...-..-+ ...|.. .++.-.-..+||..+++++...-
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~--~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT--LVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH--HHhcCCchHHHHHHHHHHHHHhc
Confidence 99888887752 335555555444332111112 233333 33333556788999998877653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=118.36 Aligned_cols=289 Identities=9% Similarity=-0.035 Sum_probs=209.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCcchH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV--SLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 141 (531)
..|+++.|.+.+....+..+.| ...+-....+..+.|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3679999999999987765442 3344455677888999999999999987653 4443 334457788899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH----HHHHHHHhcCChhHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA----SIIDGLCKDGFVNKVRV 217 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~ 217 (531)
...++.+.+..+. +..++..+...+...|++++|.+++..+.+.+..+ ...+. .........+..++..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-----~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-----DEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998644 67788899999999999999999999999875432 22221 11111123333333344
Q ss_pred HHHHHhhCC---CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh---HHHHHHHHhc
Q 038190 218 LFLDMKGRG---IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS---YCSIINSLCK 291 (531)
Q Consensus 218 ~~~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~ 291 (531)
.+..+.+.. .+.+...+..+...+...|+.++|.. +++...+.. ||... ..........
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~-------~l~~~l~~~--------pd~~~~~~~~l~~~~~l~ 311 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE-------IIFDGLKKL--------GDDRAISLPLCLPIPRLK 311 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH-------HHHHHHhhC--------CCcccchhHHHHHhhhcC
Confidence 555444431 11377888888999999999999888 777776654 33331 1222223344
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 292 DVLVDKAKELFLDMKSRGIIPDV--VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.++.+.+.+.++...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 312 ~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 312 PEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 578888999998877762 2244 5667888999999999999999995444344688888999999999999999999
Q ss_pred HHHHHHHh
Q 038190 370 SLYGEMIS 377 (531)
Q Consensus 370 ~~~~~~~~ 377 (531)
++|++...
T Consensus 391 ~~~~~~l~ 398 (409)
T TIGR00540 391 AMRQDSLG 398 (409)
T ss_pred HHHHHHHH
Confidence 99988643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-10 Score=101.58 Aligned_cols=354 Identities=11% Similarity=0.010 Sum_probs=253.0
Q ss_pred CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH
Q 038190 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196 (531)
Q Consensus 117 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (531)
+...|...+-.....+-+.|....|...|...... -+..|.+-+....-..+.+.+..+...+ ..+ -..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~--~h~ 227 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGL-----PSD--MHW 227 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcC-----ccc--chH
Confidence 44567666666666777889999999999888754 2334444443333333333332222111 110 011
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
..---+..++-.....+++..-.......|++-+...-+....+.....+++.|+. +|+++.+.++= -.
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s-------~Feei~knDPY----Rl 296 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAES-------VFEEIRKNDPY----RL 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHH-------HHHHHHhcCCC----cc
Confidence 22223456677777889999999999999988777766767777788899999999 99999887621 12
Q ss_pred CCHhhHHHHHHHHhcCCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVD-KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
-|..+|+.++-.-....+.. .|..+++ + -+--+.|+.++.+.|.-.++.++|...|++.++.+.. ....|+.+
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLm 370 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLM 370 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHh
Confidence 35678887775543322221 1222221 1 1234578888889999999999999999999998655 67789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..-|....+...|++-+++.++-+ | .|-..|-.|.++|.-.+...-|+-+|++..+.
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~--p---------------------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDIN--P---------------------RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcC--c---------------------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 999999999999999999998743 3 28889999999999999999999999999985
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHc----CCCCC--
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKR----YVKPD-- 492 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~----~~~~~-- 492 (531)
. +-|...|.+|..+|.+.++.++|++-|.....- +++.++|.+++++-++. |...+
T Consensus 428 k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t 506 (559)
T KOG1155|consen 428 K-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDET 506 (559)
T ss_pred C-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHH
Confidence 2 337899999999999999999999999887664 48888999998877642 33322
Q ss_pred HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 493 EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
.....-|..-+.+.+++++|.........-
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 233334677788999999998876554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-09 Score=101.98 Aligned_cols=420 Identities=10% Similarity=-0.023 Sum_probs=314.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+...=.+++...++.-|. ++..|...+. ..+.+.|.-++.+..+.- +.+...| .++++..-++.|..+++
T Consensus 361 ~~~~K~RVlRKALe~iP~-sv~LWKaAVe----lE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLN 430 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHIPR-SVRLWKAAVE----LEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLN 430 (913)
T ss_pred HHHHHHHHHHHHHHhCCc-hHHHHHHHHh----ccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHH
Confidence 556667788888886555 7777776654 356677999999998763 4444444 45667788899999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
...+. ++.+..+|.+-...=-..|+.+...+++++-+..-...++..+...|-.=...|-..|..--+..+.......|
T Consensus 431 kaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 431 KAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 99876 56688899888888888999999999887755432233333588889888889999999999999999998887
Q ss_pred CCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 IYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 ~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
+.-. ..||..-...|.+.+.++-+...|..++++ .+.+...|......--..|..+....+|++
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--------------fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--------------FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7532 468888888999999999999955555554 345666787777777788999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD- 383 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~- 383 (531)
.... .+-....|-....-+-..|+...|..++..+.+.... +...|-.-+..-.....++.|..+|.+....+-...
T Consensus 576 av~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv 653 (913)
T KOG0495|consen 576 AVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERV 653 (913)
T ss_pred HHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh
Confidence 9887 2334455666666777789999999999999988655 778888889999999999999999999876433222
Q ss_pred ----------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 ----------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.+..++|++++++..+.- +.-...|-.+.+.+-+.++++.|.+.|..-.+. ++-....|-.+...--+
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHH
Confidence 677899999998888653 324568899999999999999999999887764 33345677777777788
Q ss_pred cCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 454 EGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
.|++-+|..+|++..-+ .|..+.|..+..+.++. ++.+...|..-|.+..+.++-.+..+.+
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH
Confidence 99999999999987665 27777777777666643 2223344444444444444433333333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-11 Score=101.82 Aligned_cols=293 Identities=15% Similarity=0.155 Sum_probs=186.3
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChh
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVN 213 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 213 (531)
.+.++|.+.|-+|.+...+ +..+.-+|.+.|-+.|..|.|+++...+.. .|+..-+ ..+...|..-|...|-++
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4666677777666664322 444555666667777777777777666665 3322111 123344556666777777
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 293 (531)
.|+.+|..+.+.|.- -......++..|-...+|++|+. .-+.+.+.+++... .-=...|..+...+....
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId-------~A~~L~k~~~q~~~--~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAID-------VAERLVKLGGQTYR--VEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHcCCccch--hHHHHHHHHHHHHHhhhh
Confidence 777777777664322 33445556666666666666555 55555554421100 000234666677777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 373 (531)
+.+.|..++.+..+.+.+ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 889999999988876322 3444455667888999999999999999998766556778889999999999999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 374 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
++.+... ....-..+.+.-....-.+.|..++.+-+.. .|+...+..+++.-..
T Consensus 274 ~~~~~~~------------------------g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 274 RAMETNT------------------------GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHccC------------------------CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhc
Confidence 9887543 2334444444445555566676666555543 7899999988887654
Q ss_pred c---CCHHHHHHHHHHHHH
Q 038190 454 E---GGIEKAYDLLPDMEE 469 (531)
Q Consensus 454 ~---g~~~~A~~~~~~~~~ 469 (531)
. |...+.+-+++.|..
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 3 334444444544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-11 Score=102.40 Aligned_cols=298 Identities=12% Similarity=0.082 Sum_probs=204.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
-+++.++|.++|-+|.+. +|. +..+--+|.+.|-+.|..+.|+++...+.++ || .|+..-+.+....|+--
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pd-lT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PD-LTFEQRLLALQQLGRDY 117 (389)
T ss_pred hhcCcchHHHHHHHHHhc--Cch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CC-CchHHHHHHHHHHHHHH
Confidence 357889999999999985 332 5667778999999999999999999998876 33 34444333433443333
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD----VVVYSSLIDGY 324 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~ 324 (531)
.+.+.++.|.++|..+.+.+ ..-..+...++..|-...+|++|+++-+++.+.+-.+. ...|.-|...+
T Consensus 118 m~aGl~DRAE~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 34445555555999888765 23455677889999999999999999998887754433 23456666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC
Q 038190 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (531)
....+++.|..++.+..+.+.+ .+..--.+.+.+...|+++.|++.|+...+.+...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y---------------------- 247 (389)
T COG2956 191 LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY---------------------- 247 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----------------------
Confidence 6778899999999998887543 33444456677888899999999998888764322
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
-..+...|..+|...|+.++....+.++.+. .++...-..+...-....-.+.|..++.+ -
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~-----------------Q 308 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTR-----------------Q 308 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHH-----------------H
Confidence 3567788899999999999999999988874 33333334444443333334444433332 2
Q ss_pred HHcCCCCCHHHHHHHHHHHhc---cCChhHHHhhHHHhhhcchhh
Q 038190 485 AKRYVKPDEITVSILEELLNK---DENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 485 ~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~ 526 (531)
+. -+|+...+..+++.-.. .|...+-..++++|..+-...
T Consensus 309 l~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 309 LR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred Hh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 22 26888877777776653 455777777888877654443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-11 Score=103.66 Aligned_cols=292 Identities=11% Similarity=0.042 Sum_probs=183.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
-.|+|.+|.++..+-.+.+ +-....|..-..+.-+.|+.+.+-.++.++.+....++..+.-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4699999999999988887 334445666677888999999999999999887556777888888999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
-++++...+ | .+........++|.+.|++.....++..|.+.|.--+...-.
T Consensus 175 ~v~~ll~~~--p---r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------- 226 (400)
T COG3071 175 NVDQLLEMT--P---RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------- 226 (400)
T ss_pred HHHHHHHhC--c---CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------------
Confidence 999998874 3 267889999999999999999999999999987654432110
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
+ ...+|..+++-....+..+.-...|+..... .+-++..-..++.-+.++|+.++|.++..
T Consensus 227 --l----------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 227 --L----------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred --H----------------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 0 0123333443333333333333344433322 22234444445555555555555555555
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 339 ~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
+..+++..|. -...-.+.+-++...-.+..+.-.... | -++..+.+|...|.+
T Consensus 288 ~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h--~---------------------~~p~L~~tLG~L~~k 340 (400)
T COG3071 288 DALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH--P---------------------EDPLLLSTLGRLALK 340 (400)
T ss_pred HHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC--C---------------------CChhHHHHHHHHHHH
Confidence 5555544333 111223344444444444444333211 1 133455555566666
Q ss_pred CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 419 SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 419 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+.+++.
T Consensus 341 ~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 341 NKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 6666666666655544 2455556666666666666666555555544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-12 Score=117.84 Aligned_cols=282 Identities=15% Similarity=0.072 Sum_probs=217.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG--LLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+..+|+.+|..+...... +......+..+|...+++++|..+|+.+.+.. ..-+.++|.+++.-+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 578899999996554333 34566778889999999999999999997653 11356678877765533 223333
Q ss_pred HH-HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 145 LG-RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 145 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+. .+++.. +-.+.+|-++..+|.-.++.+.|++.|++.++. +|+ ...+|+.+..-+.....+|.|...|+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~---faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR---FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc---cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 32 233332 347789999999999999999999999999986 442 78899999999999999999999999887
Q ss_pred hCCCCCCHhhHHH---HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 224 GRGIYPDAFVYNS---LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 224 ~~g~~p~~~~~~~---li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
.. |...|++ +.-.|.+.++++.|+- .|+....-+ +.+.+....+...+.+.|+.++|++
T Consensus 483 ~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~-------~fqkA~~IN-------P~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 483 GV----DPRHYNAWYGLGTVYLKQEKLEFAEF-------HFQKAVEIN-------PSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred cC----CchhhHHHHhhhhheeccchhhHHHH-------HHHhhhcCC-------ccchhHHhhhhHHHHHhhhhhHHHH
Confidence 64 6666665 5567889998888888 555554443 4567778888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
++++......+ |+..--.....+...+++++|...++++.+.-+. +...|..+...|.+.|+.+.|+.-|.-+.+..
T Consensus 545 ~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 545 LYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 99999877543 5555555666777889999999999999987332 56678888899999999999999888887644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-11 Score=108.43 Aligned_cols=408 Identities=15% Similarity=0.076 Sum_probs=238.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHccCCcchHHHHHHHHHHCCCCCChh----hHHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN-ILMNCFCKMIGVSDAFVALGRILRKVFSPDVV----TLGCLIRGL 167 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~ 167 (531)
|..-|..+....+|+..|+-+++...-|+.-... .+.+.+.+...+..|++.|+..+..-+..+.. ..+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3344556666788999999888887777765433 34566778889999999999888774443333 445555667
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH------------hhHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA------------FVYN 235 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------------~~~~ 235 (531)
.+.|.++.|+.-|+...+. . |+..+-..|+-++...|+-++..+.|.+|......||. ...+
T Consensus 287 iq~gqy~dainsfdh~m~~--~----pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--A----PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred EecccchhhHhhHHHHHHh--C----ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 8899999999999999875 3 36665555555666779999999999999765333332 2222
Q ss_pred HHHH-----HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh---------------------hHHHHHHHH
Q 038190 236 SLIR-----VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL---------------------SYCSIINSL 289 (531)
Q Consensus 236 ~li~-----~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ll~~~ 289 (531)
..|. -.-+. +...|.+..-.+.++..-+ +.|+.. .--.-...+
T Consensus 361 eai~nd~lk~~ek~-~ka~aek~i~ta~kiiapv----------i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKE-NKADAEKAIITAAKIIAPV----------IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred HHHhhHHHHHHHHh-hhhhHHHHHHHHHHHhccc----------cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 2221 11111 1111222111111111111 222211 001123356
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG-YCL-MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE 367 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~ 367 (531)
.++|+++.|.++++-..+..-+.-....+.|-.. |.+ ..++..|...-+...... .-+......-...-...|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 7899999999999887765332222222222221 222 224445554444433221 0111111111122233466666
Q ss_pred HHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 368 ALSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
|.+.|.+.....-.-. .+++++|+..|-++...- ..+..+...+...|-...+...|.+++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 6666665543211000 455666666655544221 125666777777788888888888887776654
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDEITVSI 498 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~ 498 (531)
++.|+.....|...|-+.|+-..|.+.+-+--+- ..=+++++.+|++.. -++|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHH
Confidence 4556777777888888888877776554332111 134567777777765 46899999988
Q ss_pred HHHHH-hccCChhHHHhhHHHhhhc
Q 038190 499 LEELL-NKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 499 l~~~~-~~~g~~~~a~~~~~~~~~~ 522 (531)
++..| -|.|++++|.++++.+..+
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 76555 5789999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-11 Score=115.50 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=157.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 73 CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
.++..+...|+.|+.++|..+|.-|+..|+.+.|- +|..|.-...+.+...++.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888899999999999999999999999998 9999987777777778888888888888877765
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHH----cC-------------CCCCCCCcHHh----------HHHH
Q 038190 153 FSPDVVTLGCLIRGLCMQGKFTE---ASGLFTKFVA----FD-------------CRPNVIPNVIC----------YASI 202 (531)
Q Consensus 153 ~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~----~~-------------~~~~~~~~~~~----------~~~l 202 (531)
.|...+|..|..+|...||+.. ..+.++.+.. .| +.|..-||... |..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5677788888888888887544 2222222221 11 11211133222 1111
Q ss_pred HHHHHh------cC-----------ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHH
Q 038190 203 IDGLCK------DG-----------FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFV 265 (531)
Q Consensus 203 ~~~~~~------~~-----------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~ 265 (531)
+..... .+ ++....++.+......-.|++.+|..++++-..+|+.+.|.. ++..|.
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~-------ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKN-------LLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHH-------HHHHHH
Confidence 111110 01 111122222222221115889999999999999999998888 999999
Q ss_pred hCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038190 266 NGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 328 (531)
+.| .+.+.+-|-.++-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|
T Consensus 232 e~g------fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 EKG------FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HcC------CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 998 77777777777655 7788888889999999999999888876665555533
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-10 Score=101.13 Aligned_cols=270 Identities=9% Similarity=0.044 Sum_probs=201.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|++..|+++..+-.+.+..| ...|..-..+.-..|+.+.+-+++.+..+..-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-----VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-----HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchh
Confidence 589999999998877765443 566777777888889999999999999886445566677777788888888888
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-------VVYSSLID 322 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~ 322 (531)
|.. -..++...+ +...........+|.+.|++.....++..+.+.|.-.+. .+|..+++
T Consensus 172 A~~-------~v~~ll~~~-------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 172 ARE-------NVDQLLEMT-------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHH-------HHHHHHHhC-------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 888 455554443 456777888999999999999999999999999866554 35677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCC
Q 038190 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
-....+..+.-...|+...+. .+-++..-.+++.-+.+.|+.++|.++..+..+.+..|
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-------------------- 296 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-------------------- 296 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh--------------------
Confidence 666666666666677766543 23366677788889999999999999998888766543
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK------------ 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------ 470 (531)
. -...-.+.+-++...-.+..+.-.+. .+-++..+..|...|.+++.|.+|.+.|+...+.
T Consensus 297 ----~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~ 369 (400)
T COG3071 297 ----R--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELAD 369 (400)
T ss_pred ----h--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 2 22223345667777766666665543 2335578889999999999999999999977765
Q ss_pred ----HhhHHHHHHHHHHHHH
Q 038190 471 ----IRECLKAIELLHKMAK 486 (531)
Q Consensus 471 ----i~~~~~a~~~~~~~~~ 486 (531)
.|+.++|.+..++.+.
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 2666666666666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.7e-12 Score=116.59 Aligned_cols=279 Identities=13% Similarity=0.058 Sum_probs=184.4
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh-hHH
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV-NKV 215 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a 215 (531)
+..+|...|......- .-+..+...+.++|...+++++|.++|+.+... .|-...+..+|.+.+-.+-+.=.. -.|
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4567777777744442 223356666778888888888888888887765 333334667777766544322111 112
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 295 (531)
..+.+.. +-.+.+|.++..+|.-+++.+.|++ .|++..+.+ +....+|+.+..-+.....+
T Consensus 411 q~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik-------~f~RAiQld-------p~faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 411 QDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIK-------CFKRAIQLD-------PRFAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHH-------HHHHhhccC-------CccchhhhhcCChhhhhHHH
Confidence 2222222 2256778888888888877777777 555554433 22567787777777778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 296 DKAKELFLDMKSRGIIPDVVVY---SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
|.|...|+..+.. |+..| -.+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.++
T Consensus 472 d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 472 DKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHH
Confidence 8888888776654 44444 44555678888888888888888876654 5666666777777888888888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHH
Q 038190 373 GEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGL 451 (531)
Q Consensus 373 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 451 (531)
++..... |. |+..--..+..+...+++++|+..++++++. .|+ ...|..+...|
T Consensus 547 ~~A~~ld--~k---------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 547 EKAIHLD--PK---------------------NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIY 601 (638)
T ss_pred HHHHhcC--CC---------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 8776532 21 5555555566777888899999999988884 454 55677778888
Q ss_pred HHcCCHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDM 467 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~ 467 (531)
.+.|+.+.|+.-|-.+
T Consensus 602 k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWA 617 (638)
T ss_pred HHHccchHHHHhhHHH
Confidence 8888888876655443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-11 Score=113.30 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=180.4
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCCHhh-HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGR-----GI-YPDAFV-YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++.+|...|++|+.+++......
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666889999999999999999876543 21 223222 33466788899999999999999999998887665
Q ss_pred CCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038190 269 GELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD 348 (531)
Q Consensus 269 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~ 348 (531)
.+.-..+++.|..+|.+.|++++|...++...+- ++..... ..|.
T Consensus 279 ------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~-~~~~ 323 (508)
T KOG1840|consen 279 ------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGA-SHPE 323 (508)
T ss_pred ------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhcc-ChHH
Confidence 4445667888888999999999998888765532 1110000 0011
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 349 T-SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 349 ~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
+ ..++.+...|...+++++|..+++...+ ++.........--..+++.|...|...|++++|.+
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~---------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALK---------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHH---------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 1 1234445556666666776666664432 12111111111135689999999999999999999
Q ss_pred HHHHhhhC----CC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038190 428 LFKKLPRY----GP--EP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILE 500 (531)
Q Consensus 428 ~~~~~~~~----g~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 500 (531)
+++.++.. +. .+ ....++.|...|.+.+++.+|.++|.+ +..+. +....+.+-...+|..|+
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~----------~~~i~-~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE----------AKDIM-KLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH----------HHHHH-HHhCCCCCchHHHHHHHH
Confidence 99988752 11 22 245678899999999999999999965 34444 333323222347899999
Q ss_pred HHHhccCChhHHHhhHHHhh
Q 038190 501 ELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 501 ~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+|.+.|++++|.++.+...
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 99999999999999988765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.3e-09 Score=96.08 Aligned_cols=374 Identities=12% Similarity=0.077 Sum_probs=203.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI-GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
.|-.-+..+..+|++......|++.+.. .+.....+|...+......+-++.+..+|++.++. ++..-+..|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 4555555555666666666666665443 12223345666666666666666666666666654 222345556666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCC--------------------------------------CCcH--HhHHHHHHHHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNV--------------------------------------IPNV--ICYASIIDGLC 207 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~--------------------------------------~~~~--~~~~~l~~~~~ 207 (531)
+..+++++|.+.+..+.......+. .+|. ..|++|.+.|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 6666666666655555432111000 0343 37899999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----------------CChhhhhcchHHHHHHHHHHHhCCCCC
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA----------------VNWEDAKGNTSAALELHEEFVNGNGEL 271 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------~~~~~a~~~~~~a~~~~~~~~~~~~~~ 271 (531)
+.|.++.|.++|++....- .+..-|..+.++|+.. ++-+.- ..++..+.-|+.+....+..
T Consensus 260 r~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~-~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD-VDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh-hhHHHHHHHHHHHHhccchH
Confidence 9999999999998876541 2333344444444321 111000 01122222233322222100
Q ss_pred Cc-------------------------------------cccC------CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 272 GV-------------------------------------ICHP------DVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 272 ~~-------------------------------------~~~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.. .+.| -...|..+...|-..|+.+.|..+|++..+.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 00 0011 1234667778888888888888888887765
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------CCCC-------CHHHHHHHHHHHHhcCCHHHH
Q 038190 309 GIIPD---VVVYSSLIDGYCLMGRIDDARKLFVSIESE----------GCIP-------DTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 309 ~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------g~~p-------~~~~~~~li~~~~~~~~~~~a 368 (531)
..+-- ..+|.....+=.+..+++.|.++.+..... |-.| +...|+..++.-...|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 43321 234444445555666777888777765432 0011 234556666666667788888
Q ss_pred HHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChHHHHHHHHHh
Q 038190 369 LSLYGEMISMGVRPD------------NSCILEAAELFRTLHNTKFELDL-TVFNCLVDGLCK---SWRLRSAWELFKKL 432 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~ 432 (531)
..+|+++.+..+... ..-++++.+++++-...-.-|++ ..|+..+.-+.+ .-..+.|..+|++.
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888877655433 23344455554443333223443 356665555543 33678888888888
Q ss_pred hhCCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHH
Q 038190 433 PRYGPEPNVVTYTVMI--CGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 433 ~~~g~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++ |++|...-+--|+ ..--..|-...|++++++....
T Consensus 577 L~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 577 LD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred Hh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 87 5665533222222 2222457777777777776554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-11 Score=116.49 Aligned_cols=248 Identities=11% Similarity=0.021 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---------ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 104 VNFICLSERLNTIGLLPDFVSLNILMNCFC---------KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 104 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
++|+.+|++..+.. +-+...|..+..++. ..+++++|...++++++..+. +..++..+..++...|+++
T Consensus 278 ~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 278 QQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHH
Confidence 56666666666553 223344444444332 123356777777777766533 5566666666677777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcch
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 254 (531)
+|...|++.... .|+ +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|..
T Consensus 356 ~A~~~~~~Al~l--~P~---~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~-- 427 (553)
T PRK12370 356 VGSLLFKQANLL--SPI---SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR-- 427 (553)
T ss_pred HHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH--
Confidence 777777777665 332 4556666777777777777777777777664322 11222233334555667776766
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 038190 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 333 (531)
.+++..... .+-+...+..+..++...|++++|...++++... .|+ ....+.+...|+..| +.|
T Consensus 428 -----~~~~~l~~~------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a 492 (553)
T PRK12370 428 -----LGDELRSQH------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERA 492 (553)
T ss_pred -----HHHHHHHhc------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHH
Confidence 555544332 1113334555666667777777777777766544 233 333344444556555 366
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 334 RKLFVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 334 ~~~~~~~~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
...++.+.+..- .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 493 ~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 493 LPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666665544211 1121222 33334445555555544 6665544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-11 Score=113.29 Aligned_cols=343 Identities=15% Similarity=0.121 Sum_probs=184.1
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038190 108 CLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 108 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 187 (531)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|.....+.+..+++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46777888999999999999999999999999998 9999988877888899999999999999877665
Q ss_pred CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh-------hCCCCCCHhhHHHHHHHHHhcCChhhhh---------
Q 038190 188 CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK-------GRGIYPDAFVYNSLIRVYCCAVNWEDAK--------- 251 (531)
Q Consensus 188 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~li~~~~~~~~~~~a~--------- 251 (531)
.|...+|..|..+|...||......+=+.|. ..|+.....-+-..++++ -+-..++.
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVLE 152 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHHH
Confidence 1578899999999999999765222211121 122221111111111111 11111111
Q ss_pred cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038190 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 330 (531)
+.++.+++++..+..... ..| +-.+++-+... ..+++-..+.+...+ .|+..+|.+++..-...|+.
T Consensus 153 glwaqllkll~~~Pvsa~-----~~p----~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAW-----NAP----FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHhhCCcccc-----cch----HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence 111111112222111110 001 11112222221 122222222222221 46666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
+.|..++.+|.+.|+..+..-|..|+-+ .++...+..++.-|.+.|+.| +..|+.
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p----------------------~seT~a 275 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP----------------------GSETQA 275 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC----------------------CcchhH
Confidence 6666666666666666666655555554 555555555565665555544 666776
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~ 490 (531)
..+-.+...|.... .+.|. +....+.+-+..-.-.| ..|.+.+++-.. .-.+..+.+..-.|+.
T Consensus 276 dyvip~l~N~~t~~--------~~e~s-q~~hg~tAavrsaa~rg--~~a~k~l~~nl~-----~~v~~s~k~~fLlg~d 339 (1088)
T KOG4318|consen 276 DYVIPQLSNGQTKY--------GEEGS-QLAHGFTAAVRSAACRG--LLANKRLRQNLR-----KSVIGSTKKLFLLGTD 339 (1088)
T ss_pred HHHHhhhcchhhhh--------ccccc-chhhhhhHHHHHHHhcc--cHhHHHHHHHHH-----HHHHHHhhHHHHhccc
Confidence 66666666443111 11221 22222222222222222 333333332211 1222333333334555
Q ss_pred CCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 491 PDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 491 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
....+|...++.. .+|+.++..++...+...
T Consensus 340 ~~~aiws~c~~l~-hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 340 ILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred cchHHHHHHHHHH-HcCCCchHHHHHhhhcCC
Confidence 5555555444433 378888888888777654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-08 Score=92.38 Aligned_cols=420 Identities=15% Similarity=0.140 Sum_probs=242.1
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH--HHH
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI--LMN 130 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--li~ 130 (531)
++.-+.... ..|++++|....+.++..++. +..++.+-+-++.+.++|++|+.+.+.-.. ..+++. +=.
T Consensus 15 l~t~ln~~~--~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEK 85 (652)
T KOG2376|consen 15 LLTDLNRHG--KNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHhc--cchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHH
Confidence 444444443 356999999999999987765 566777778889999999999966554221 111122 234
Q ss_pred HHH--ccCCcchHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 131 CFC--KMIGVSDAFVALGRILRKVFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 131 ~~~--~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+|| +.+..++|+..++ |..+ +..+...-...+.+.|++++|+.+|+.+...+.+- .+...-..++.+-.
T Consensus 86 AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAA 157 (652)
T ss_pred HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHH
Confidence 444 7889999999887 3333 34466667788899999999999999998754321 12222222222111
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHhhHHHHH---HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh-hHH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI---RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYC 283 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~ 283 (531)
-..+. + +......| ..+|..+. ..+...|++.+|++.++.|+++..+-...+....+.+.-... .-.
T Consensus 158 ----~l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 158 ----ALQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred ----hhhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 11111 2 22222233 33444443 345678999999998888877766655554221110111111 122
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHH----------------------------------
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV----YSSLIDGYC---------------------------------- 325 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ll~~~~---------------------------------- 325 (531)
-+.-++-..|+..+|..+|....+.... |... -|.|+.+-.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445667899999999999998876432 2211 111111000
Q ss_pred -----------hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCC---------
Q 038190 326 -----------LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS--KIEKVEEALSLYGEMISMGVRPD--------- 383 (531)
Q Consensus 326 -----------~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~--------- 383 (531)
-.+..+.+.++...+. +..| ...+.+++..+. +...+..+.+++...-+......
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ 384 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ 384 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence 0011111111111111 1122 233344444332 22246666666666544322111
Q ss_pred ----cccHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CCCCcHHHHHHHH-
Q 038190 384 ----NSCILEAAELFR--------TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GPEPNVVTYTVMI- 448 (531)
Q Consensus 384 ----~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~- 448 (531)
.|+.+.|++++. .+.+.+.. +.+...++..+.+.++-+.|..++...... .-.+......+++
T Consensus 385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 385 LKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 678888888887 55555443 456677788888888888888887777641 1122223333333
Q ss_pred ---HHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcc
Q 038190 449 ---CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRN 523 (531)
Q Consensus 449 ---~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 523 (531)
..-.++|+-++|..+++++.+ . .++|..+...++.+|++. +.+.|..+-++++...
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k-----------------~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~ 521 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVK-----------------F-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLK 521 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHH-----------------h-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcc
Confidence 333466777777666655544 2 367889999999999997 7899998888776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-10 Score=104.72 Aligned_cols=255 Identities=20% Similarity=0.159 Sum_probs=186.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCCCCcHHh-HHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFD--CRPNVIPNVIC-YASIIDGLCKDGFVNKVRVLFLDMKGR-----GI- 227 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~- 227 (531)
..+...+...|...|+++.|+.+++...+.- ......|.+.+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3466678999999999999999999887640 00011134443 344778899999999999999988642 21
Q ss_pred CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh-hHHHHHHHHhcCCCHHHHHHHHHHH
Q 038190 228 YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYCSIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 228 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
.| -..+++.|..+|.+.|++++|...++.|+++++...... .|.+. .++.+...++..+++++|..+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 12 245677788889999999999999999999999943322 33433 4667788889999999999998876
Q ss_pred HhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 306 KSR---GIIP----DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCI--P-DTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 306 ~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~--p-~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.+. -..+ -..+++.|...|...|++++|.++|+.++.. +.. + ....++.|...|.+.++..+|.++
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l 431 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL 431 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence 543 1112 2467899999999999999999999997653 111 1 245677888899999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|.+... |. .....+.+-...+|..|...|...|+++.|.++.+....
T Consensus 432 ~~~~~~---------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 432 FEEAKD---------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHH---------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 887543 11 111122222456789999999999999999999887763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-10 Score=97.83 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=164.1
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 345677888999999999999999999988763 335778888889999999999999999999887543 567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..+...|++++|...+++..+....+ .....+..+..++...|++++|...+++..+..
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYP---------------------QPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccc---------------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987642222 145677788999999999999999999998752
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.+...+..+...+...|++++|.+.+++... . .+.+...+..++..+...|+.++|..+.
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQ-----------------T-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------h-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 23466788888999999999999887765433 1 2345667778889999999999999998
Q ss_pred HHhhh
Q 038190 517 PSFLS 521 (531)
Q Consensus 517 ~~~~~ 521 (531)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 87654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=108.44 Aligned_cols=234 Identities=16% Similarity=0.043 Sum_probs=169.6
Q ss_pred CCCHhhHHHHHHHHHc-----cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 038190 119 LPDFVSLNILMNCFCK-----MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM---------QGKFTEASGLFTKFV 184 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~ 184 (531)
..+...|...+++... .+++++|...|++.++..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455556565555321 23567999999999987533 45566666655442 245889999999999
Q ss_pred HcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+. .|+ +..++..+...+...|++++|...|++..+.+. .+...+..+...+...|++++|.. .++..
T Consensus 332 ~l--dP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~-------~~~~A 398 (553)
T PRK12370 332 EL--DHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQ-------TINEC 398 (553)
T ss_pred hc--CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH-------HHHHH
Confidence 87 553 788899999999999999999999999988642 246678888889999999999999 66666
Q ss_pred HhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 265 VNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 265 ~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+ |+ ...+..++..+...|++++|...+++..+...+-+...+..+..++...|++++|...+.++...
T Consensus 399 l~l~--------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLD--------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcC--------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 6654 33 22333445556778999999999999876532224556777788888999999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
... +....+.+...|...| +.|...++.+.+
T Consensus 471 ~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 EIT-GLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred cch-hHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 221 3344555666777777 477777777655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-08 Score=91.91 Aligned_cols=418 Identities=13% Similarity=0.034 Sum_probs=260.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
+++...+.+.+.+++..+. -..+.....-.+...|+-++|.+..+.-.+.. .-+...|+.+.-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4677777777777775444 22344444445667789999999988887754 446778999888888889999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
..+++.+.. |...+.-+.-.-++.|+++........+.+. .|+ ....|..+..++--.|+...|..++++..+.
T Consensus 99 ~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~---~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 99 RNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPS---QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988744 7788888888888899999888888887775 332 5668888999999999999999999998865
Q ss_pred C-CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 226 G-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 226 g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
- -.|+...+......+.+.....++.. ++.|++.+...... +.-....-..-...+.+.+++++|..++..
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 3 35676666554433333222222211 33333344443222 111122233456677889999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHH-HHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038190 305 MKSRGIIPDVVVYSSLIDG-YCLMGRIDDAR-KLFVSIESEGCIPDTSSYNTL-INSYSKIEKVEEALSLYGEMISMGVR 381 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~-~~~~~~~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~ 381 (531)
+... .||..-|...+.. +.+..+.-++. .+|....+.= |....-..+ +.......-.+..-.++..+.+.|+.
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9887 5666666555544 43333333443 6666665531 111111111 11111122334444566666777765
Q ss_pred CCcccHHHHH------HHHHHHH--------hCC----------CCCCHHHH--HHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 382 PDNSCILEAA------ELFRTLH--------NTK----------FELDLTVF--NCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 382 ~~~~~~~~a~------~~~~~~~--------~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
+--.++..-. .+++++. ..| -+|+...| -.++..|-+.|+++.|..+++...+.
T Consensus 321 ~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH 400 (700)
T KOG1156|consen 321 SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH 400 (700)
T ss_pred chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 5411111000 0222221 111 14555554 45678888899999999999988874
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 436 GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 436 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
.|+ +..|-.=...+...|++++|..++++..+. + .+|..+-...+.-..++++.++|.+
T Consensus 401 --TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el-----------------D-~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 401 --TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL-----------------D-TADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred --CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----------------c-chhHHHHHHHHHHHHHccccHHHHH
Confidence 555 334445557788888888887777765543 2 3444444455555666667777777
Q ss_pred hHHHhhhcc
Q 038190 515 LLPSFLSRN 523 (531)
Q Consensus 515 ~~~~~~~~~ 523 (531)
++..+...+
T Consensus 461 ~~skFTr~~ 469 (700)
T KOG1156|consen 461 VLSKFTREG 469 (700)
T ss_pred HHHHhhhcc
Confidence 666655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=96.46 Aligned_cols=202 Identities=13% Similarity=-0.008 Sum_probs=140.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 34567777788888888888888888887654 445667777778888888888888888888776533 5566777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
.+...|++++|...+++.......+ .....+..+...+...|++++|...|++...... .+...+..+...+...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYP---QPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 8888888888888888887642222 2345666677778888888888888888776422 24556666777777777
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
++++|.. .++...... +.+...+..+...+...|+.+.|..+.+.+..
T Consensus 184 ~~~~A~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARA-------YLERYQQTY-------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777 444444332 23444555666666777777777777666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-12 Score=79.95 Aligned_cols=50 Identities=44% Similarity=0.853 Sum_probs=44.9
Q ss_pred CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 194 PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 58889999999999999999999999999999999999999999988864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.4e-08 Score=92.24 Aligned_cols=304 Identities=12% Similarity=0.050 Sum_probs=207.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ--- 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 170 (531)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 34567889999999999875543 3444556778888999999999999999999999643 555555666665332
Q ss_pred --CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh-HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 171 --GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN-KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 171 --g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
.+.+....+++++... .| ...+...+.-.+.....+. .+..++..+..+|+++ +|+.+-..|....+.
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp----~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YP----RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred ccccHHHHHHHHHHHHHh--Cc----cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 2567788899988764 33 3333333433333323333 3455666777778653 355555555533332
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCC----ccccCCHh--hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELG----VICHPDVL--SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSL 320 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 320 (531)
.-... .+..+...+...+.-.+ ..-+|+.. ++..+...|-..|++++|+++++...+. .|+ +..|..-
T Consensus 160 ~~i~~---l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 160 AIIES---LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred HHHHH---HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 22222 22222333322221110 11234443 4456678888999999999999999887 455 6778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhC
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 400 (531)
...+-..|++.+|.+.++.....+.. |...=+-.+..+.++|+.++|.+++....+.+..|
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~------------------ 295 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP------------------ 295 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc------------------
Confidence 88999999999999999999987654 77777778888999999999999998887766433
Q ss_pred CCCCCHH----HH--HHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 401 KFELDLT----VF--NCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 401 ~~~~~~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.-|.. .| .....+|.+.|++..|++.|....+
T Consensus 296 --~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 296 --LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11222 22 4568899999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-12 Score=79.41 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999988989999999999888864
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.7e-10 Score=95.47 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=171.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-NTLINS 358 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~~ 358 (531)
.--+.+.++|.+.|.+.+|...++...+. .|-+.||..|-.+|.+..++..|..++.+-.+. .|-.+|| .-+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 33467889999999999999999988887 567788889999999999999999999998876 3444444 556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
+...++.++|.++|+...+.. | .+++...++...|.-.++++.|+.+|+++++.|+.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~--~---------------------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~ 356 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH--P---------------------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ 356 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC--C---------------------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC
Confidence 888899999999998887642 2 26667777777777888888888888888887765
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--------------------IRECLKAIELLHKMAKRYVKPDEITVSI 498 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~ 498 (531)
++..|+.+.-+|.-.++++-++.-|++.... ||++.-|.+.|+-.+..+. .....++.
T Consensus 357 -speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnN 434 (478)
T KOG1129|consen 357 -SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNN 434 (478)
T ss_pred -ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHh
Confidence 6777777777777788888887777776655 4788888888887775442 24578999
Q ss_pred HHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 499 LEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 499 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
|.-.-.+.|++++|..+++......+.
T Consensus 435 LavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 435 LAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 999999999999999999886665543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=97.25 Aligned_cols=232 Identities=14% Similarity=0.005 Sum_probs=180.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
+.+.+.|.+.|-+.+|.+.+...++. .|-+.||..|-++|.+..++..|+.++.+.++.- +-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888999999999999888776 5677788889999999999999999998888762 22444445567888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 250 (531)
++.++|.++++...+. .|. ++.+...+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.+.++-+
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~---nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPI---NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCc---cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 9999999999998876 332 6667777778888889999999999999998887 778888888888888888888
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 330 (531)
+..++.|+... ...+ --...|-.+.......||+..|.+.|+....++-. +...++.|.-.-.+.|++
T Consensus 378 L~sf~RAlsta---t~~~--------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 378 LPSFQRALSTA---TQPG--------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHHhhc---cCcc--------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCch
Confidence 88555544432 1111 11335666777788889999999999888776432 567788887778888999
Q ss_pred HHHHHHHHHHHhc
Q 038190 331 DDARKLFVSIESE 343 (531)
Q Consensus 331 ~~a~~~~~~~~~~ 343 (531)
+.|..+++.....
T Consensus 446 ~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 446 LGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHHhhhh
Confidence 9999998887765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-08 Score=89.35 Aligned_cols=408 Identities=13% Similarity=0.067 Sum_probs=256.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
++.-|.-+-+++...+- +...---++..+.-.|++++|..+...-.-. ..|..+......++.+..++++|..++.
T Consensus 31 ~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777765543 3334445667777788888888877665332 4577778888888899999999999988
Q ss_pred HHHH--CCCCCChhh----------H-----HHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 147 RILR--KVFSPDVVT----------L-----GCL-------IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 147 ~~~~--~~~~~~~~~----------~-----~~l-------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.... ..+.-+..+ + +.- ...|....+.++|...|.+.... |...|..+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~--------D~~c~Ea~ 178 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA--------DAKCFEAF 178 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--------chhhHHHH
Confidence 3311 111111111 0 000 12233445567777777776653 33333322
Q ss_pred ---HHHHHhc-----------------C-ChhHHHHHHHHH----hhC------------CCCCCHhhHHHHHHHHHhcC
Q 038190 203 ---IDGLCKD-----------------G-FVNKVRVLFLDM----KGR------------GIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 203 ---~~~~~~~-----------------~-~~~~a~~~~~~m----~~~------------g~~p~~~~~~~li~~~~~~~ 245 (531)
+.+..-. + +.+....+|+.. ... +..-+.........-|...+
T Consensus 179 ~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 179 EKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred HHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcC
Confidence 2221111 1 111111222211 000 11122333333344455555
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 325 (531)
++.+..+ +++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .+....+|-++.-.|.
T Consensus 259 ~f~~c~k-------it~~lle~d-------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 259 RFKECLK-------ITEELLEKD-------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred hHHHHHH-------HhHHHHhhC-------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 6655555 777777765 566666777778888999888877777777776 3446788888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CC-CCCC---------cccHHHHHHH
Q 038190 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS--MG-VRPD---------NSCILEAAEL 393 (531)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~-~~~~---------~~~~~~a~~~ 393 (531)
..|+..+|++.|.+....+.. -...|-.+...|+-.|..++|+..+...-+ .| ..|. .++++.|.+.
T Consensus 324 ~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 889999999999987765332 356788889999999999999998877654 22 2232 5667778888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GP----EPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
|.++....+ .|+..++-+.-.....+.+.+|..+|+..+.. .+ .....+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 877776543 37777787877777888888888888877631 01 113446777778888888888887777665
Q ss_pred HHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 468 EEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 468 ~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
... .+.+..++.+++-.|...|+++.|.+.+.+-..
T Consensus 482 L~l------------------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLL------------------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHc------------------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 543 244666677777777777777777776666433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-08 Score=92.36 Aligned_cols=287 Identities=12% Similarity=0.044 Sum_probs=191.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-----CCcc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-----IGVS 139 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 139 (531)
.|++++|+..++..... +.-...........+.+.|+.++|..+|..+++.+ +.|..-|..+..+..-. .+.+
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHH
Confidence 36999999999886553 22234455667778899999999999999999986 33444455555554222 2466
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHH
Q 038190 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT-EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL 218 (531)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 218 (531)
....+|+.+...- |...+...+.-.+.....+. .+...+..+...|+. .+|+.|-..|.......-...+
T Consensus 95 ~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-------slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 95 KLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-------SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred HHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHcChhHHHHHHHH
Confidence 7788888887653 33333332322222222333 344455566665533 3677787777766666666666
Q ss_pred HHHHhhC----C----------CCCCHh--hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 219 FLDMKGR----G----------IYPDAF--VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 219 ~~~m~~~----g----------~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
+...... + -.|+.. ++..+...|...|++++|+. +++...... +..+..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-------~Id~aI~ht-------Pt~~ely 231 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-------YIDKAIEHT-------PTLVELY 231 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-------HHHHHHhcC-------CCcHHHH
Confidence 6665432 1 123443 34555667778888888888 555555543 2336678
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH--HH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS------SY--NT 354 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~------~~--~~ 354 (531)
..-...+-+.|++.+|.+.++........ |...-+.....+.++|+.++|.+++..+.+.+..|-.. .| ..
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e 310 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETE 310 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHH
Confidence 88899999999999999999999887544 67777778888899999999999999988776433221 22 34
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038190 355 LINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
...+|.+.|++..|+..|..+.+
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 56788888998888877665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-07 Score=79.72 Aligned_cols=309 Identities=13% Similarity=0.013 Sum_probs=213.1
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh-HHHH
Q 038190 161 GCLIRGLCM--QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV-YNSL 237 (531)
Q Consensus 161 ~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~l 237 (531)
..-+.+++. .++...|...+-.+.....-+ .|+.....+...+...|+.++|...|++.... .|+..+ ....
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr---~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Y 272 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLR---CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLY 272 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCC---ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHH
Confidence 334444444 355555555554444433344 37888999999999999999999999988764 222221 1111
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
.-.+...|+.++... +...+.... .-+...|..-+..+...++++.|+.+-++..+.... +...|
T Consensus 273 a~LL~~eg~~e~~~~-------L~~~Lf~~~-------~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~al 337 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSA-------LMDYLFAKV-------KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEAL 337 (564)
T ss_pred HHHHHhccCHhhHHH-------HHHHHHhhh-------hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHH
Confidence 223345566666555 555554432 123334544555566778899999888887765322 33444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-------C---CCCC
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS----M-------G---VRPD 383 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~-------~---~~~~ 383 (531)
-.-...+...|+++.|.-.|+......+ .+..+|..|+.+|...|.+.+|.-+-..... . | ..|+
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 4444567788999999999998877532 3788999999999999999998765544322 1 1 2355
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
...-++|.++++......+. -....+.+...+...|....+..++++... ..||....+.|.+.+...+.+.+|++.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 77789999999888765422 345778889999999999999999999887 478999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCCH
Q 038190 464 LPDMEEKIRECLKAIELLHKMAKRYVKPDE 493 (531)
Q Consensus 464 ~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~ 493 (531)
|....+.=.+.+.+++=++.|.+..-+||.
T Consensus 494 y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 494 YYKALRQDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHhcCccchHHHHHHHHHHhccCCCCc
Confidence 988877644555666666666655445443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-07 Score=83.41 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 236 (531)
+..|-..+..+...|++......|++.... -| +.....+|...+......+-++-+..+|++..+. ++..-.-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--Lp-vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~ee 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LP-VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREE 174 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--Cc-hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHH
Confidence 346666677777777777777777776653 11 1123446777777777777777788888777764 4444566
Q ss_pred HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH---HHHHHHHHHhCCCCCC
Q 038190 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK---AKELFLDMKSRGIIPD 313 (531)
Q Consensus 237 li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~ 313 (531)
.|..++..+++++|.+ .+..+.......+..-+.+...|..+.....++-+.-. ..++++.+... -+|
T Consensus 175 yie~L~~~d~~~eaa~-------~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQ-------RLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred HHHHHHhccchHHHHH-------HHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 6777777777777777 55555443322222123344455555555544433222 23333333322 122
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 314 --VVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 314 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...|..|.+.|.+.|.+++|.++|++..+.
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 345667777777777777777777766553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-08 Score=83.53 Aligned_cols=359 Identities=9% Similarity=0.026 Sum_probs=197.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
++..|+.+++--...+..-...+-.-+...+.+.|++++|+..|..+.+.. .++...+..|.-++.-.|.+.+|..+-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 899999998877654433222333445566778999999999999988755 6777777777777777788888887765
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+..+ ++-.-..++..--+.++-++-..+-+.+.. ...---+|....-..-.+++|+++|......
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD---------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD---------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 5322 333333444555566776665555555443 1122223333333444677888888877654
Q ss_pred CCCCHhhHHHHHH-HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc--CCC---------
Q 038190 227 IYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK--DVL--------- 294 (531)
Q Consensus 227 ~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~--------- 294 (531)
.|+-...|.-+. +|.+..-++-+.+ +++-....- +.+..+.|..+....+ +|+
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqe-------vl~vYL~q~-------pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQE-------VLKVYLRQF-------PDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 233333443332 3444433333322 554444432 2233333333322222 111
Q ss_pred ------------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038190 295 ------------------------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS 350 (531)
Q Consensus 295 ------------------------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~ 350 (531)
-+.|++++--+.+. . +..-..|+-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 12222222222211 1 122334555688899999999887765422 12222
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 351 SYNTLINSYSKIE-------KVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDLTVF 409 (531)
Q Consensus 351 ~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (531)
....++ ++..| ...-|.+.|+-.-+.+..-| ...++..+..+..+...-.. |...-
T Consensus 320 ilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn 396 (557)
T KOG3785|consen 320 ILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFN 396 (557)
T ss_pred HHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 222222 22222 34445555554433333322 22234444444444433223 33333
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 038190 410 NCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT-VMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 466 (531)
-.+.++++..|++.+|+++|-++....++ |..+|. .|..+|.+.++++.|..++-+
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 35788999999999999999888765444 556665 456788899999988766644
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-07 Score=84.62 Aligned_cols=377 Identities=14% Similarity=0.054 Sum_probs=242.3
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+.++|........+.++. +.+.|+.+.-.+-...++++|++.|......+ +.|...+.-+.-.-++.|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 367999999999988886665 88899999999989999999999999999886 6677888888888888999999998
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH------HHHHhcCChhHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII------DGLCKDGFVNKVRV 217 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~ 217 (531)
......+..+. ....|..+..++.-.|+...|..++++..+....+ |+...+.... ......|..+.|.+
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~---~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS---PSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888877432 55688888889999999999999999998764312 3444444332 34456788888887
Q ss_pred HHHHHhhCCCCCCHhh-HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh-cCCCH
Q 038190 218 LFLDMKGRGIYPDAFV-YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC-KDVLV 295 (531)
Q Consensus 218 ~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 295 (531)
.+..-... + .|... -..-...+.+.+++++|.. ++..+.... ||...|...+..+. +..+.
T Consensus 207 ~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~-------~y~~Ll~rn--------Pdn~~Yy~~l~~~lgk~~d~ 269 (700)
T KOG1156|consen 207 HLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVK-------VYRRLLERN--------PDNLDYYEGLEKALGKIKDM 269 (700)
T ss_pred HHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHH-------HHHHHHhhC--------chhHHHHHHHHHHHHHHhhh
Confidence 77655432 1 12222 2233455667777777777 999998876 66666665554444 44444
Q ss_pred HHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HH
Q 038190 296 DKAK-ELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE----AL 369 (531)
Q Consensus 296 ~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~----a~ 369 (531)
-++. .+|....+.- |....-..+--.... ..-.+...+.+..+.+.|+.+ ++..+...|-.-...+- +.
T Consensus 270 ~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt 344 (700)
T KOG1156|consen 270 LEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVT 344 (700)
T ss_pred HHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHH
Confidence 4444 6666655441 111111111111111 122334455666677777643 23333333322111110 11
Q ss_pred HHHHHHHhCCC----------CCC---------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 370 SLYGEMISMGV----------RPD---------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 370 ~~~~~~~~~~~----------~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
.+...+...|. .|. .++++.|...++.+.+.-+. -+..|..-.+.+..+|++++
T Consensus 345 ~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 345 SYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred HHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHHHHHHHHHhcCChHH
Confidence 11111111111 111 67788898888888875321 23456666799999999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
|..++++..+.. .+|...-..-..-..++++.++|.++.....+.
T Consensus 424 Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 424 AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999998753 345444335566667889999998877665543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-08 Score=88.43 Aligned_cols=341 Identities=14% Similarity=0.087 Sum_probs=211.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+....+-|.++|.+++|++.|.+.++. .|| +..|.....+|...|+|+.+.+.-...++..+. -+.++..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 344456688999999999999999987 577 778889999999999999999988888876432 3446666677778
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH--------H-HhhC--CCCCCHhhHHHH
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL--------D-MKGR--GIYPDAFVYNSL 237 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~-m~~~--g~~p~~~~~~~l 237 (531)
..|++++|+.=..-. .+..++....-.-.+.++++ + +.+. .+.|+.....+.
T Consensus 195 ~lg~~~eal~D~tv~-----------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~sy 257 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL-----------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASY 257 (606)
T ss_pred hhccHHHHHHhhhHH-----------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 888888775433222 12222222222222222222 2 2212 233454444433
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc-----CCCHHHHHHHHHHHHhCC-CC
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-----DVLVDKAKELFLDMKSRG-II 311 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~-~~ 311 (531)
...+... ....+ ..+.......+..++.. ...+..|.+.+.+-.... ..
T Consensus 258 f~sF~~~---------------~~~~~----------~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~ 312 (606)
T KOG0547|consen 258 FGSFHAD---------------PKPLF----------DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS 312 (606)
T ss_pred Hhhcccc---------------ccccc----------cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh
Confidence 3332211 00000 00111111122211111 112333333332211110 01
Q ss_pred C--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038190 312 P--D---------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV 380 (531)
Q Consensus 312 ~--~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 380 (531)
+ + ..+.......+.-.|+.-.|..-|+..+.....++ ..|--+...|....+.++....|.+..+.
T Consensus 313 ~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-- 389 (606)
T KOG0547|consen 313 LSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDL-- 389 (606)
T ss_pred ccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhc--
Confidence 1 1 11222222234557999999999999998765533 33777788899999999999999998763
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHH
Q 038190 381 RPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 381 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~ 459 (531)
.|. |+.+|-.-.+.+.-.+++++|..=|++.+.. .| +...|..+..+..+.+++++
T Consensus 390 dp~---------------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~ 446 (606)
T KOG0547|consen 390 DPE---------------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAE 446 (606)
T ss_pred CCC---------------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHH
Confidence 343 7778888889999999999999999999984 44 45667777777778899999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHh
Q 038190 460 AYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSF 519 (531)
Q Consensus 460 A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 519 (531)
++..|++.+++ ++..+..|+....++...+++++|.+.++..
T Consensus 447 ~m~~Fee~kkk------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 447 SMKTFEEAKKK------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHh------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99988887765 5555667777777777777777777766653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-08 Score=91.33 Aligned_cols=276 Identities=13% Similarity=0.047 Sum_probs=214.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.+++.+...+++.+.+..|. ....+..-|..+...|+..+...+-.+|++.- |-.+.+|-++.-.|.-.|...+|.+.
T Consensus 257 ~c~f~~c~kit~~lle~dpf-h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPF-HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhCCC-CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 34899999999999887664 55566677778888999888888888888774 55677999999999989999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|.+....... -...|-.+...|+-.|..++|+..+...-+. -++ ...-+--+.--|.+.++.+.|.++|.+...
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPG---CHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccC---CcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9988765322 3458999999999999999999998887664 222 111233355568889999999999999886
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
. .+-|+..++-+.-.....+.+.+|...++.++...+...... .....+++.+..+|.+.+.+++|+..+++
T Consensus 409 i-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 409 I-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-------IFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred c-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-------cchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 4 233677777777667778888888886666665444443332 23566789999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
..... +-+..++..+.-.|...|+++.|.+.|.+.+.. .|+-.+-..++..+
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 88874 448899999999999999999999999998764 57776666666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-08 Score=89.96 Aligned_cols=224 Identities=11% Similarity=-0.050 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHH
Q 038190 66 VELNDALCFFNYMIHMQP-TP--FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 142 (531)
+..+.++..+.+++...+ .| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 367888888888876432 22 23567788888999999999999999998875 556789999999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..|++.++..+. +..+|..+..++...|++++|++.|++.... .|+ +.. .......+...++.++|...|.+.
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~---~~~-~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPN---DPY-RALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---CHH-HHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999987543 5678888888999999999999999999876 332 221 122222344567899999999775
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
... ..|+...+ . ......|+...+ . .+..+...........+....+|..+...+.+.|++++|...|
T Consensus 192 ~~~-~~~~~~~~-~--~~~~~lg~~~~~-~-------~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 192 YEK-LDKEQWGW-N--IVEFYLGKISEE-T-------LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred Hhh-CCccccHH-H--HHHHHccCCCHH-H-------HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 543 22332222 2 222334554433 2 2222221110000001123456777888888888888888888
Q ss_pred HHHHhCC
Q 038190 303 LDMKSRG 309 (531)
Q Consensus 303 ~~~~~~~ 309 (531)
++..+.+
T Consensus 260 ~~Al~~~ 266 (296)
T PRK11189 260 KLALANN 266 (296)
T ss_pred HHHHHhC
Confidence 8887764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-07 Score=83.53 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=138.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
++-+...+++++|.....++...+ +.|...+..-+-++.+.+.+++|+.+.+.-... ..+..-+-.-.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 556778899999999999999876 666778888888899999999998655432211 11111111122334468999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
++|+..++-. ++. +..+...-...+-+.|++++|.++|+.+.+.+..- +...-..++.+-... .
T Consensus 96 Dealk~~~~~-----~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~ 160 (652)
T KOG2376|consen 96 DEALKTLKGL-----DRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q 160 (652)
T ss_pred HHHHHHHhcc-----ccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h
Confidence 9999998833 332 55577777888999999999999999998774331 111111122111100 0
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHH---HHHHHHhcCCCHHHHHHHHHHHHhCC-------------CCCCH-H
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYC---SIINSLCKDVLVDKAKELFLDMKSRG-------------IIPDV-V 315 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~-~ 315 (531)
. ..+.... ..| ..+|. .....+...|++.+|+++++...+.+ +.... .
T Consensus 161 -------~-~~~q~v~------~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 161 -------V-QLLQSVP------EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred -------H-HHHHhcc------CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 1 0111111 122 22333 33445678999999999999883221 11111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
+-..|..++...|+..+|..++..+++....
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 2234555677899999999999999887543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-06 Score=81.86 Aligned_cols=308 Identities=11% Similarity=-0.005 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDV-VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
..|..+...+...|+.+.+...+....+.... .+. .........+...|++++|..++++.... .|+ +...+.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~---~~~a~~ 81 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPR---DLLALK 81 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC---cHHHHH
Confidence 34555556666667777766666665544221 121 11222234456678888888888887765 342 444444
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 201 SIIDGLCK----DGFVNKVRVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 201 ~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
. ...+.. .+....+.+.+.. .....|+ ......+...+...|++++|.. .++......
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-------~~~~al~~~------- 144 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEE-------AARRALELN------- 144 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhhC-------
Confidence 2 222222 3444444444443 1122233 3333445566777788877777 666655544
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDV--VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD-TSS 351 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~ 351 (531)
+.+...+..+..++...|++++|...+++..+... .++. ..|..+...+...|++++|..++++.......+. ...
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~ 224 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALD 224 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHH
Confidence 34456677788888889999999999888776532 1222 3455677888899999999999998764422111 111
Q ss_pred H-H--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 352 Y-N--TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 352 ~-~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
. + .++.-+...|....+.++ +.+... ..... .+ ............++...|+.+.|..+
T Consensus 225 ~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~---------------~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 225 LLDAASLLWRLELAGHVDVGDRW-EDLADY---------------AAWHF-PD-HGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HhhHHHHHHHHHhcCCCChHHHH-HHHHHH---------------HHhhc-Cc-ccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 1 1 222223333332222222 111110 00000 00 11222334677888899999999999
Q ss_pred HHHhhhCCCC------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 429 FKKLPRYGPE------P--NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 429 ~~~~~~~g~~------p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++.+...... . .....-....++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998763211 0 1112222333456899999999988766554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.6e-08 Score=78.58 Aligned_cols=199 Identities=13% Similarity=-0.036 Sum_probs=123.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+...|.-.|.+.|++..|..-+++.++.. +-+..+|..+...|.+.|..+.|.+.|++.++..+. +-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34445566777777777777777777764 334556777777777777777777777777776533 5567777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
..|++++|...|++... .|....-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++.
T Consensus 115 ~qg~~~eA~q~F~~Al~---~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALA---DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHh---CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 77777777777777776 3333334556777777777777777777777776664322 2334444555555555555
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.|.. .++.....+ .++..+.-..|..-...|+.+.+-++=.++.+
T Consensus 191 ~Ar~-------~~~~~~~~~-------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 191 PARL-------YLERYQQRG-------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHH-------HHHHHHhcc-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5554 555554444 24455555555555555665555554444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-06 Score=76.52 Aligned_cols=185 Identities=13% Similarity=0.085 Sum_probs=124.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
+.-+...+++..|+.+++.-...+-.-...+-..+..++...|++++|...|..+.+.. .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666788999999999887654422222344445567779999999999999887754 56777777788778888999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 253 (531)
.+|..+-..... +.-.-..|....-+.++-++-..+-..+.+. ...--++....... ..
T Consensus 108 ~eA~~~~~ka~k---------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR-------~H 166 (557)
T KOG3785|consen 108 IEAKSIAEKAPK---------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR-------MH 166 (557)
T ss_pred HHHHHHHhhCCC---------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH-------HH
Confidence 999888766532 3444555666667778877777666666542 11122233333322 34
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH-HHHhcCCCHHHHHHHHHHHHhC
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
|++|++++..+...+ |.....|.-+ -+|.+..-++.+.++++-..+.
T Consensus 167 YQeAIdvYkrvL~dn--------~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDN--------PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHHhcC--------hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 566666999988766 5555555544 4566777788888888776665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-07 Score=82.96 Aligned_cols=358 Identities=14% Similarity=0.049 Sum_probs=206.4
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|+++.|...|-..+...|. |-..|..=..+|+..|++++|++=-.+-.+.. +.=+..|.....++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHH
Confidence 467999999999999988776 88889888999999999999998888777664 3335689999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCC------------------------------------------------hHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGK------------------------------------------------FTE 175 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~------------------------------------------------~~~ 175 (531)
.|..-++..+. +...+..+..++..... .+.
T Consensus 92 ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 99998887533 55566666665521100 000
Q ss_pred HHHHHHHHHHc--------C-------CCCCC-----CC-------------cHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 176 ASGLFTKFVAF--------D-------CRPNV-----IP-------------NVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 176 a~~~~~~~~~~--------~-------~~~~~-----~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
.....-.+... + ..|.. .| -..-...+.++.-+..+++.|.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000000 0 00000 00 0112334455555556666666666666
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELF 302 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 302 (531)
.+.. -+..-++....+|...|.+.......+.+++.-.+....- ..=...+..+..+|.+.++++.|...|
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-------klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-------KLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-------HHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 5543 2444455556667777777777776666555444433321 111122233444566667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038190 303 LDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRP 382 (531)
Q Consensus 303 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 382 (531)
.+.......|+. ..+....+++.+..+...-.+... ..-...-...+.+.|++..|+..|.+++... |
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--C
Confidence 775554333222 122333444444444433322221 1111122455667777777777777776643 4
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHH
Q 038190 383 DNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~ 461 (531)
+ |...|....-+|.+.|.+..|+.=.+...+. .|+ ...|..=..++....++++|+
T Consensus 390 ~---------------------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 390 E---------------------DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred c---------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 7788888888888888888888877777764 333 222322233333344444444
Q ss_pred HHHHHHH
Q 038190 462 DLLPDME 468 (531)
Q Consensus 462 ~~~~~~~ 468 (531)
+.|++..
T Consensus 447 eay~eal 453 (539)
T KOG0548|consen 447 EAYQEAL 453 (539)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-07 Score=75.45 Aligned_cols=379 Identities=12% Similarity=0.092 Sum_probs=225.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHH-HHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC-LIR 165 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~ 165 (531)
.--+.+++..+.+..++..|++++....++. +.+......|..+|-...++..|-..|+++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3347788888888899999999998888775 336677888888888999999999999998776 344444442 345
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIID--GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.+-+.+.+..|+++...|... + +...-..-+. ..-..+++..+..++++....| +..+.+.......+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~----~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---P----ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---H----HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 667788899999998887641 1 1111111122 2335678888888888877432 44444444444567
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----------
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP----------- 312 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 312 (531)
.|+++.|.+ -|....+-++ .. ....|+..+ +..+.++++.|+++..++.+.|++-
T Consensus 157 egqyEaAvq-------kFqaAlqvsG-----yq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 157 EGQYEAAVQ-------KFQAALQVSG-----YQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred cccHHHHHH-------HHHHHHhhcC-----CC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 777777777 5555544442 22 345666544 4456788899999999888877542
Q ss_pred --CHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 313 --DVV---------------VYSSLIDGYCLMGRIDDARKLFVSIESE-GCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 313 --~~~---------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
|+. .+|.-...+.+.|+++.|.+.+-.|.-+ ....|++|...+.-.-. .+++.+..+-++-
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqF 301 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQF 301 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHH
Confidence 111 1122222344566677776666665422 12234444433322111 2333333333333
Q ss_pred HHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC-CcHHHHHHHHHHHH-
Q 038190 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE-PNVVTYTVMICGLC- 452 (531)
Q Consensus 375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~- 452 (531)
+.+.+. -...||..++-.||+..-++.|-+++-+-...-.. .+...|+ +++++.
T Consensus 302 LL~~nP-----------------------fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 302 LLQQNP-----------------------FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred HHhcCC-----------------------CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 333221 24679999999999999999999888664432111 1333444 344444
Q ss_pred HcCCHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHH
Q 038190 453 IEGGIEKAYDLLPDMEEKI--------------------RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHEC 512 (531)
Q Consensus 453 ~~g~~~~A~~~~~~~~~~i--------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 512 (531)
..-..++|.+-++.+.+.. .....++.-+++.++.- ..+.....+.|++..++.-+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~v 433 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMV 433 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHH
Confidence 3456777777666655541 11122222233322221 12345566778888899999
Q ss_pred HhhHHHhhh
Q 038190 513 MNLLPSFLS 521 (531)
Q Consensus 513 ~~~~~~~~~ 521 (531)
.++|..-..
T Consensus 434 Ek~Fr~Sve 442 (459)
T KOG4340|consen 434 EKIFRKSVE 442 (459)
T ss_pred HHHHHHHHh
Confidence 888876443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-07 Score=83.71 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=150.0
Q ss_pred ccCCHHHHHHHHHHHHhCC-CCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH
Q 038190 99 GKKYYVNFICLSERLNTIG-LLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 175 (531)
..+..+.++.-+.+++... ..|+ ...|..+...+...|+++.|...|++.++..+. +...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 3456677888888887543 1222 345777888889999999999999999988643 67899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchH
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 255 (531)
|...|++..+. .|+ +..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|..
T Consensus 117 A~~~~~~Al~l--~P~---~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~--- 186 (296)
T PRK11189 117 AYEAFDSVLEL--DPT---YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKE--- 186 (296)
T ss_pred HHHHHHHHHHh--CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHH---
Confidence 99999999876 453 67788889999999999999999999988753 333222222222334455556655
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHhcCC
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GI--I-PDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~ll~~~~~~g~ 329 (531)
.+....... .++...+ .+.. ...|+...+ ..++.+.+. .+ . .....|..+...+.+.|+
T Consensus 187 ----~l~~~~~~~-------~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 187 ----NLKQRYEKL-------DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred ----HHHHHHhhC-------CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 765544322 2222222 2222 234554443 344444422 11 1 123568888888999999
Q ss_pred HHHHHHHHHHHHhcCC
Q 038190 330 IDDARKLFVSIESEGC 345 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~ 345 (531)
+++|...|++..+.++
T Consensus 252 ~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 252 LDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.7e-07 Score=85.29 Aligned_cols=178 Identities=9% Similarity=-0.047 Sum_probs=113.2
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-C-------CCCCHhhHHHHHHHHHcc
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-G-------LLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-------~~~~~~~~~~li~~~~~~ 135 (531)
..|+.+.|.+-..-+. +...|..+.+.|.+.++++-|.-.+..|... | .+-+..+=..+.......
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 4568888887776552 5678999999999999999888777776422 1 111113333334444577
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
|.+++|+.+|.+-++. ..|=..|...|.+++|.++-+.--+.. -..||......+-..++.+.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH-------Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH-------LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee-------hhhhHHHHHHHHHhhccHHHH
Confidence 8999999999887653 334456777899999988865432211 234666677777777888888
Q ss_pred HHHHHHHhhCC-------------------CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHH
Q 038190 216 RVLFLDMKGRG-------------------IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEE 263 (531)
Q Consensus 216 ~~~~~~m~~~g-------------------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~ 263 (531)
++.|++..... -.-|...|.....-+-..|+.+.|+..|..|.+.|..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 87776532110 0113344444444455667777777755555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7e-07 Score=95.66 Aligned_cols=349 Identities=10% Similarity=-0.056 Sum_probs=214.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC------CC--hhhHHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS------PD--VVTLGCLIRGLC 168 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~li~~~~ 168 (531)
+...|++..+...++.+.......+..........+...|+++++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666565555421111122333334445556778999999998877543111 11 112223345566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GI-YPDAFVYNSLIRVYCC 243 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~ 243 (531)
..|++++|...+++............-..+.+.+...+...|++++|...+.+.... |- .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988763111100001234566777788899999999999887642 11 1112344556677888
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCC--CHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG--IIP--DVVVYSS 319 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~ 319 (531)
.|+++.|...+++++.+.+...... .......+..+...+...|++++|...+++..... ..+ ....+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQ------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 9999999998888877765532111 11123345556667778899999999988875531 112 2334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 320 LIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSY-----NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
+...+...|+++.|...++......... ....+ ...+..+...|+.+.|..++...........
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~---------- 687 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANN---------- 687 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccc----------
Confidence 6667888999999999998875431111 11111 1122444567888888888766433111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
......+..+..++...|++++|..++++.... |..++ ..++..+..++.+.|+.++|.+.+.+..
T Consensus 688 ---------~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 688 ---------HFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred ---------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001122456778889999999999999988752 32222 3456667778889999999999999887
Q ss_pred HH
Q 038190 469 EK 470 (531)
Q Consensus 469 ~~ 470 (531)
+.
T Consensus 759 ~l 760 (903)
T PRK04841 759 KL 760 (903)
T ss_pred HH
Confidence 76
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-06 Score=91.08 Aligned_cols=349 Identities=11% Similarity=-0.024 Sum_probs=207.3
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--CCCc--HHhHHHHHHHHH
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN--VIPN--VICYASIIDGLC 207 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~--~~~~~~l~~~~~ 207 (531)
....|+++.+..+++.+.......+..........+...|+++++..++......-...+ ..+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334566666666665542211112233334455666788999999999988754311110 0011 122233445567
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 208 KDGFVNKVRVLFLDMKGRGIYPDA----FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+.+++........ ......++.
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~--------~~~~~~~~~ 535 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV--------YHYALWSLL 535 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHH
Confidence 889999999999987653111121 23455566677889999999977777766554211 112234556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSR----GII--P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPDTSSY 352 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~ 352 (531)
.+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 6777888999999999998876552 211 1 2233445556677789999999999887543 111123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHH
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL--TVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
..+...+...|+++.|...++......... +..... ......+..+...|+.+.|..++.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 677 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNG------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLR 677 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 445667788999999999888875421000 000000 011112344556899999999987
Q ss_pred HhhhCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcc
Q 038190 431 KLPRYGPEPN---VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKD 506 (531)
Q Consensus 431 ~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 506 (531)
.......... ...+..+..++...|++++|...+++.... . ...|...+ ..++..+..++.+.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~----------~---~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 678 QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN----------A---RSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H---HHhCchHHHHHHHHHHHHHHHHc
Confidence 7664211111 111345667788899999998888765432 1 12233222 24556677777788
Q ss_pred CChhHHHhhHHHh
Q 038190 507 ENCHECMNLLPSF 519 (531)
Q Consensus 507 g~~~~a~~~~~~~ 519 (531)
|+.++|.+.+.+.
T Consensus 745 G~~~~A~~~L~~A 757 (903)
T PRK04841 745 GRKSEAQRVLLEA 757 (903)
T ss_pred CCHHHHHHHHHHH
Confidence 8887777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-06 Score=76.37 Aligned_cols=388 Identities=14% Similarity=0.087 Sum_probs=247.1
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCh
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD-VVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 173 (531)
.+....|+++.|+.+|.+.+... ++|...|..-..+|+..|++++|++=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 45667899999999999998876 568889999999999999999998877776665 344 35888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH---HHHHHHHhhC---CCCCCHhhHHHHHHHHHhc---
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV---RVLFLDMKGR---GIYPDAFVYNSLIRVYCCA--- 244 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~m~~~---g~~p~~~~~~~li~~~~~~--- 244 (531)
++|+..|.+=.+. .|+ +...++.+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~--d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhc--CCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999998876 443 677788887777211000000 0011111100 0000111222222222111
Q ss_pred -------CChhhhhcchHHHHHHHHH-----HHhCCCC-CCccccC------------C----------HhhHHHHHHHH
Q 038190 245 -------VNWEDAKGNTSAALELHEE-----FVNGNGE-LGVICHP------------D----------VLSYCSIINSL 289 (531)
Q Consensus 245 -------~~~~~a~~~~~~a~~~~~~-----~~~~~~~-~~~~~~~------------~----------~~~~~~ll~~~ 289 (531)
.+...+.. .+.. +...+.. ......| | ..-...+.++.
T Consensus 162 l~~~l~d~r~m~a~~-------~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADG-------QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcccccHHHHHHHH-------HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 00111111 0000 0000000 0000001 0 12345677788
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHHhc
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-------NTLINSYSKI 362 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-------~~li~~~~~~ 362 (531)
.+..+++.|.+-+....+.. -+..-++....+|...|.+..+....+...+.|.. ...-| ..+..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 88889999999999888774 35566677778899999988888887777666543 22222 2344477778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 363 EKVEEALSLYGEMISMGVRPD----NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
++++.++..|.+....-..|+ ....++++.......-.+... ..-...-...+.+.|++..|+..|.+++... +
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 899999999999877666665 333444444444443333222 1122233778889999999999999999864 4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMAKRYVKPDE-ITVSILE 500 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 500 (531)
-|...|....-+|.+.|.+..|++=.+..++. +.++++|+..|.+.++.. |+. .....+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~ 467 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR 467 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 47888999999999999999998855554443 589999999999998765 443 3444444
Q ss_pred HHHh
Q 038190 501 ELLN 504 (531)
Q Consensus 501 ~~~~ 504 (531)
+++.
T Consensus 468 rc~~ 471 (539)
T KOG0548|consen 468 RCVE 471 (539)
T ss_pred HHHH
Confidence 4443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-07 Score=74.94 Aligned_cols=206 Identities=13% Similarity=-0.011 Sum_probs=152.9
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
+..-|.-.|.+.|+...|..-++++++..+. +..+|..+...|.+.|+.+.|.+-|++.... .|+ +-.+.|...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~---~GdVLNNYG 110 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APN---NGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC---ccchhhhhh
Confidence 4556667788889999999999999888543 5678888888899999999999999988876 443 667888888
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
..+|..|.+++|...|++....-. .--..+|..+.-+..+.|+.+.|.. .|++....+ +-...+.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-------~l~raL~~d-------p~~~~~~ 176 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-------YLKRALELD-------PQFPPAL 176 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-------HHHHHHHhC-------cCCChHH
Confidence 888999999999999988876521 2234567777777778888888888 555554443 2234456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
..+.....+.|++-.|..+++.....+. ++.......|..--..|+.+.+.+.=..+.+. .|...-|
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 6777788888888888888888776654 77777777778777888888777766666554 3444433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-05 Score=74.84 Aligned_cols=389 Identities=13% Similarity=0.014 Sum_probs=242.5
Q ss_pred CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH
Q 038190 117 GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV 196 (531)
Q Consensus 117 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (531)
.+.-|...|..+.-+....|+++.+.+.|++....-+. ....|..+...|...|.-..|..+++.-......| +|.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p---s~~ 393 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP---SDI 393 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC---Ccc
Confidence 35567888888888888899999999999988765433 66788888888999999888999888776543223 244
Q ss_pred HhHHHHHHHHHh-cCChhHHHHHHHHHhhC--CC--CCCHhhHHHHHHHHH----hcCChhhhhcchHHHHHHHHHHHhC
Q 038190 197 ICYASIIDGLCK-DGFVNKVRVLFLDMKGR--GI--YPDAFVYNSLIRVYC----CAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 197 ~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~--g~--~p~~~~~~~li~~~~----~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|. ....+.+-.....++++.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 444444444443 46677777766665541 11 112223333333332 2334444445667788888888777
Q ss_pred CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC
Q 038190 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCI 346 (531)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~ 346 (531)
++ ..|++..|- .--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 474 d~-----~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 474 DP-----TDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred CC-----CCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 63 345444443 3346677889999999999999876778999999999999999999999999876543 21
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------CCCCCCccc-------HHHHHHHHH-HH
Q 038190 347 PDTSSYNTLINSYSKIEKVEEALSLYGEMIS---------------------MGVRPDNSC-------ILEAAELFR-TL 397 (531)
Q Consensus 347 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---------------------~~~~~~~~~-------~~~a~~~~~-~~ 397 (531)
|......-+..-...++.++++.....+.. .|+....+. ...+..+.. +.
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 111100111111123444444333222211 111111111 111111111 11
Q ss_pred HhCC---------CC--CC------HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 398 HNTK---------FE--LD------LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 398 ~~~~---------~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
...+ .. |+ ...|......+.+.+..++|.-.+.+.... ..-.+..|......+...|++.+|
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHH
Confidence 1111 11 11 234556677778888888888777777663 233566677777778888888888
Q ss_pred HHHHHHHHHH-----------------HhhH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 461 YDLLPDMEEK-----------------IREC--LKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 461 ~~~~~~~~~~-----------------i~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+.|...... .|+. .+...++..+.+.+. .+...|..++.++.+.|+.++|.+-++...
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 8888766554 1433 344448888887763 477899999999999999999988887643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-06 Score=71.97 Aligned_cols=202 Identities=11% Similarity=0.013 Sum_probs=126.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh-HHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT-LGCL 163 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 163 (531)
++.-.-.+...+...|++..|+.-|...++-. |+. .++..-...|...|+-..|+.-+..+++. .||-.. ..--
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 44445566777888899999999999888642 332 23444456788889999999999998876 455432 2233
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA------------SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
...+.+.|.+++|..-|+.++......+. ....+. ..+..+...|+...|+.....+.+--+- |.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~--~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGL--VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcch--hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hh
Confidence 45688899999999999999876332211 111111 2233444567777777777777664222 55
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
..|..-..+|...|++..|+. -++...+.. ..+..++--+-..+...|+.+.++...++.++.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~-------Dlk~askLs-------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIH-------DLKQASKLS-------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHH-------HHHHHHhcc-------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 555566666777776666666 333322222 234445555566666677777776666666654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-06 Score=80.97 Aligned_cols=265 Identities=16% Similarity=0.071 Sum_probs=161.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
..++++.+++..+.+... |++..| +.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.
T Consensus 460 h~kslqale~av~~d~~d---p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTD---PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHhcCCCC---chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 345666777776653221 333333 333466667788888888888776555577777777777777788888887
Q ss_pred chHHHHHHHHHHHhCC-CC------CCccccCCHhhHHHHHHHHhc------C-----------------CCHHHHHHHH
Q 038190 253 NTSAALELHEEFVNGN-GE------LGVICHPDVLSYCSIINSLCK------D-----------------VLVDKAKELF 302 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ll~~~~~------~-----------------~~~~~a~~~~ 302 (531)
..+.+++-|..-...- +. .+. ..-...|...++..+-. . .+..++....
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~-~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFND-REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhccc-HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 7777666555400000 00 000 01111222222222220 0 0111111111
Q ss_pred HH-----------------HHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 303 LD-----------------MKSRGIIP--D------VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 303 ~~-----------------~~~~~~~~--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
.. +...-..| + ...|......+.+.+..++|...+.+.....+ .....|.....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhH
Confidence 11 01111111 1 12334455567777888888777777665432 25566666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH--HHHHhhhC
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE--LFKKLPRY 435 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~ 435 (531)
.+...|.+++|.+.|..... +.|+ ++.+..++..++.+.|+..-|.. ++..+.+.
T Consensus 693 ~~~~~~~~~EA~~af~~Al~--ldP~---------------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALA--LDPD---------------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHh--cCCC---------------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 77788888888888877665 3444 77889999999999999888888 99999986
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+ +-+...|..+...+-+.|+.++|.+.|+...
T Consensus 750 d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 750 D-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred C-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 4 3378899999999999999999988886543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=3e-06 Score=80.15 Aligned_cols=312 Identities=10% Similarity=-0.047 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGL-LPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
..|..+...+...|+.+.+...+.+..+... .++.. ........+...|+++.|...+++..+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3455555556666677776666665543321 11221 1222233445668888888888887776432 3333332 22
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 166 GLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 166 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
.+.. .+..+.+.+.++. ..+...........+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 2222 3344444444433 122211234455566677788888888888888887753 22455667777788
Q ss_pred HhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC--HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCHHHH-
Q 038190 242 CCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD--VLSYCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDVVVY- 317 (531)
Q Consensus 242 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~- 317 (531)
...|+++++.. .++....... ..++ ...|..+...+...|++++|..++++...... .+.....
T Consensus 159 ~~~g~~~eA~~-------~l~~~l~~~~-----~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 159 EMQGRFKEGIA-------FMESWRDTWD-----CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred HHcCCHHHHHH-------HHHhhhhccC-----CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 88888888887 5555544321 0122 23455677888889999999999988754322 1122111
Q ss_pred H--HHHHHHHhcCCHHHHHHH---HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 038190 318 S--SLIDGYCLMGRIDDARKL---FVSIESEGC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAA 391 (531)
Q Consensus 318 ~--~ll~~~~~~g~~~~a~~~---~~~~~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 391 (531)
+ .++..+...|....+.+. ......... ............++...|+.+.|..+++.+.......+
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-------- 298 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-------- 298 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC--------
Confidence 1 223333344433322222 111111100 11112222456677888999999999988865321100
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 392 ELFRTLHNTK-FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 392 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+ .............++...|++++|.+.+.....
T Consensus 299 -------~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 299 -------DNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred -------chhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 001223334445566789999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-06 Score=75.22 Aligned_cols=266 Identities=14% Similarity=0.054 Sum_probs=174.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD-FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
|+.....+...+...|+.++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... ..+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56666777777777777777777777766442 22 1222222233345666666666666555432 12333343344
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
..+....++..|+.+-++.+.. ++. +...|-.-...+...+++++|.-.|+...... +-+...|..+++.|...
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r---~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPR---NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--Ccc---cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 4455667778888887777765 332 55566666677788889999988888877542 23678899999999988
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH-HHHh-cCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII-NSLC-KDVLVDKAKELFLDMKSRGIIPD-VVVYSSLI 321 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 321 (531)
|++.+|.-....+...+ +.+..+.+.+. ..|. ....-++|..+++...+. .|+ ....+.+.
T Consensus 382 ~~~kEA~~~An~~~~~~--------------~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~A 445 (564)
T KOG1174|consen 382 KRFKEANALANWTIRLF--------------QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIA 445 (564)
T ss_pred chHHHHHHHHHHHHHHh--------------hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHH
Confidence 88888877433333322 23444444442 2222 222347788888776654 454 34456667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+...|..++++.+++..+.. .||....+.|...+...+.+.+|++.|....+.
T Consensus 446 EL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 446 ELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7788889999999999987764 578888899999999999999999999888764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=84.75 Aligned_cols=249 Identities=16% Similarity=0.112 Sum_probs=140.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
++-+.-.|.+..++.-.+ .... .+ ..+......+.+++...|.++.++ .++.... .|.......+...+..
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~--~~--~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~ 78 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF--SP--ENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS 78 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS--TC--HHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC--Cc--hhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC
Confidence 444555678777776665 3221 22 123445556777888888766543 3443332 4555555444433322
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCcccc-CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICH-PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLID 322 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 322 (531)
..+.+.+.. -++...... .. .+..........+...|++++|++++... .+.......++
T Consensus 79 ~~~~e~~l~-------~l~~~~~~~------~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vq 139 (290)
T PF04733_consen 79 PSDKESALE-------ELKELLADQ------AGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQ 139 (290)
T ss_dssp STTHHCHHH-------HHHHCCCTS---------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHH
T ss_pred ccchHHHHH-------HHHHHHHhc------cccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHH
Confidence 122222211 333322222 12 22223333345566778888888877542 35666777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 038190 323 GYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 398 (531)
.|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.+|..+|+++.+.
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------------------- 196 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------------------- 196 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------------------
Confidence 8888888888888888887653 23 333344444432 33577888888887553
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI-EKAYDLLPDM 467 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 467 (531)
+.+++.+.+.+..++...|++++|.+++.+..+.. +-++.+...++.+....|+. +.+.+++.++
T Consensus 197 ---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 197 ---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp ---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred ---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 13377888888888888888888888888877643 23566777777777777776 4454444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.7e-05 Score=69.31 Aligned_cols=141 Identities=11% Similarity=0.029 Sum_probs=94.9
Q ss_pred HHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC
Q 038190 77 YMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156 (531)
Q Consensus 77 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (531)
+-++.+|. |..+|+.||+-+..+ .++++.+.++++... ++-.+..|..-|..-....+++.++.+|.+-+..- .+
T Consensus 11 ~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 33445565 899999999988666 999999999999854 24456789999999999999999999999988763 45
Q ss_pred hhhHHHHHHHHHh-cCChHH----HHHHHHHHH-HcCCCCCCCCcHHhHHHHHHH---------HHhcCChhHHHHHHHH
Q 038190 157 VVTLGCLIRGLCM-QGKFTE----ASGLFTKFV-AFDCRPNVIPNVICYASIIDG---------LCKDGFVNKVRVLFLD 221 (531)
Q Consensus 157 ~~~~~~li~~~~~-~g~~~~----a~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~ 221 (531)
...|...+.---+ .|+... ..+.|+-.. ..|.++. +...|+..+.. |..+.+.+...++|.+
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~---s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIK---SYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcc---cchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 6677766653322 233222 223333332 2343442 44566666653 3344567778888888
Q ss_pred HhhC
Q 038190 222 MKGR 225 (531)
Q Consensus 222 m~~~ 225 (531)
+...
T Consensus 163 al~t 166 (656)
T KOG1914|consen 163 ALVT 166 (656)
T ss_pred HhcC
Confidence 8764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2e-07 Score=83.50 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-EEALSLY 372 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~ 372 (531)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554433 3345555555555555555555555555555443322 334444444444444444 3344444
Q ss_pred HHHHh
Q 038190 373 GEMIS 377 (531)
Q Consensus 373 ~~~~~ 377 (531)
..+..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-06 Score=75.75 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=129.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh--HH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF--TE 175 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 175 (531)
..++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++++..+. +..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHH
Confidence 3455667777777776653 333345555555555555 467777777777766543 445666555555555542 56
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchH
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTS 255 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 255 (531)
++.+++++.+. +|. +..+|+...-++...|+++++++.++++.+.+.. +...|+.....+.+.+....-....+
T Consensus 127 el~~~~kal~~--dpk---Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 127 ELEFTRKILSL--DAK---NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHh--Ccc---cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67777777765 332 6777777777777777888888888887776544 55556555544444322111111233
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD----VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
..++......... +-+...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~-------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4455665655544 44667777777777663 34466878887766653 2366777888888875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-05 Score=78.00 Aligned_cols=108 Identities=19% Similarity=0.088 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHH------h
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL-------LPDMEEKI------R 472 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~i------~ 472 (531)
+.-|..|...+...|+++.|.+.-++.- +..||..+-.+|...+.+.-|.-. -+++.+.| |
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcC
Confidence 3467777778888888888877665543 556777777777777666655210 01111111 4
Q ss_pred hHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 473 ECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
-+++-+.+++..+ |+..- ...|+-|.-.|.+- +.++.++-++-+-.+
T Consensus 1294 yFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1294 YFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR 1341 (1666)
T ss_pred cHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Confidence 4555555555444 43322 24566677677665 566666666554444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.5e-06 Score=69.33 Aligned_cols=284 Identities=15% Similarity=0.093 Sum_probs=193.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI-LMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~~~ 145 (531)
++++|++++....++.++ +......|...|-...++..|-+.|+++-.. .|...-|.. -...+-+.+.+.+|+.+.
T Consensus 25 ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 799999999998887665 7888888999999999999999999999765 344443332 234556778999999999
Q ss_pred HHHHHCCCCCChhhHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 146 GRILRKVFSPDVVTLGCLI--RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
..|... ++...-..-+ ...-..+|+..+..++++....+ +..+.+...-...+.|+++.|.+-|+...
T Consensus 102 ~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 102 FLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------EADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-------ccchhccchheeeccccHHHHHHHHHHHH
Confidence 887643 2222111111 22335688888999888876422 44555556666678999999999999988
Q ss_pred hC-CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC----CCCCcccc---CC---------------Hh
Q 038190 224 GR-GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN----GELGVICH---PD---------------VL 280 (531)
Q Consensus 224 ~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~~~~~~~~---~~---------------~~ 280 (531)
+- |.. ....|+..+. +.+.++++.|++ ...++.+.| ++.|.... +| +.
T Consensus 172 qvsGyq-pllAYniALa-Hy~~~qyasALk-------~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 172 QVSGYQ-PLLAYNLALA-HYSSRQYASALK-------HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred hhcCCC-chhHHHHHHH-HHhhhhHHHHHH-------HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 75 555 5566776664 445666666666 766666655 22222111 11 12
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.+|.-...+.+.++++.|.+-+-.|.-. ....|+.|...+.-. ...+++....+-+.-+.+.++- ...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 2333334456788999999888888654 245577777665432 2245666666777777777654 567888899999
Q ss_pred HhcCCHHHHHHHHHH
Q 038190 360 SKIEKVEEALSLYGE 374 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~ 374 (531)
|++.-++-|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 999999988888755
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.1e-07 Score=83.50 Aligned_cols=221 Identities=15% Similarity=0.078 Sum_probs=160.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++.+|.-.|+..++.+|. +..+|..|....+.+++-..|+..+.+.++.. +-|..+.-.|.-.|...|.-..|..+
T Consensus 298 nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 46899999999999998887 88999999999999999999999999999875 44666777777777776666666665
Q ss_pred HHHHHH------------------------------------------CCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038190 145 LGRILR------------------------------------------KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTK 182 (531)
Q Consensus 145 ~~~~~~------------------------------------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 182 (531)
++.-+. .+..+|..++..|.-.|--.|++++|.+.|+.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 554432 22235677777788888888999999999999
Q ss_pred HHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHH
Q 038190 183 FVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELH 261 (531)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~ 261 (531)
.+.. .|+ |..+||-|...++...+.++|+..|++.++. +|+ +.+...|.-.|...|.+++|.+.+-.|+.+-
T Consensus 456 AL~v--~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 456 ALQV--KPN---DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHhc--CCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8876 664 8889999999999999999999999998875 454 2333445557888898888888777776654
Q ss_pred HHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHH
Q 038190 262 EEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKA 298 (531)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 298 (531)
+.-...... ..++...|.+|=.++...++.|.+
T Consensus 529 ~ks~~~~~~----~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 529 RKSRNHNKA----PMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hcccccccC----CcchHHHHHHHHHHHHHcCCchHH
Confidence 442221100 122344555555555555555433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-05 Score=76.62 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----------CCCCCHhhHHHHHHHHHcc
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI-----------GLLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----------g~~~~~~~~~~li~~~~~~ 135 (531)
.++++.+.+..|...+++-|..+.-.+..-|...=-.+..+++|+..+.. ++.-|+...-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 58899999999998888888887777777777666677778888876543 2456777788889999999
Q ss_pred CCcchHHHHHH
Q 038190 136 IGVSDAFVALG 146 (531)
Q Consensus 136 g~~~~a~~~~~ 146 (531)
|++.+..++-+
T Consensus 738 ~QikEvERicr 748 (1666)
T KOG0985|consen 738 GQIKEVERICR 748 (1666)
T ss_pred ccHHHHHHHHh
Confidence 88877766543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-06 Score=79.45 Aligned_cols=362 Identities=15% Similarity=0.088 Sum_probs=205.7
Q ss_pred ChhhHHHHHH--HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC---------CC
Q 038190 86 FMPSFNSLLG--ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---------FS 154 (531)
Q Consensus 86 ~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~ 154 (531)
|..+-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+..|.... -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5566667765 3678899999988777655 45689999999999999998887777765421 11
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
++ .+-....-.....|.+++|+.+|.+-.+ |..|=..|-..|.|++|.++-+.--.-.+ ..||
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Ty 861 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-------------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTY 861 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-------------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhH
Confidence 21 2222233345678999999999998875 44455667788999999988654332222 2344
Q ss_pred HHHHHHHHhcCChhhhhcchHH----HHHHHHHHHhCCCCCCc--cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSA----ALELHEEFVNGNGELGV--ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~----a~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.....-+-..++.+.|++.|++ |.++++.+.+..+.... .-..|...|.--...+...|+.+.|+.+|....+
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D- 940 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD- 940 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-
Confidence 4444445555666666665544 33343333321100000 0012233344444445556777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 038190 309 GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 388 (531)
|-.+++..|-.|+.++|-++-++-. |......|.+.|...|++.+|..+|.+... +.
T Consensus 941 --------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fs 997 (1416)
T KOG3617|consen 941 --------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FS 997 (1416)
T ss_pred --------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HH
Confidence 3445555666777777776655422 455556677888888888888888877643 22
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKS--WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.|+++.+ +.++ -..|...+... .+.-.|-.+|++.-. . +..-+..|-++|.+.+|+++-=+
T Consensus 998 nAIRlcK---End~------~d~L~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~ 1060 (1416)
T KOG3617|consen 998 NAIRLCK---ENDM------KDRLANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFR 1060 (1416)
T ss_pred HHHHHHH---hcCH------HHHHHHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHh
Confidence 2333322 1111 11122222222 233344555554321 1 11223357777777777765432
Q ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 467 MEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 467 ~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
-++ -.|++++-+=+ ....|+..++...+-++...++++|..++-.
T Consensus 1061 tqQ-----f~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1061 TQQ-----FSALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred hcc-----cHHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 221 13333333323 3335666677777777777777777766543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-06 Score=81.20 Aligned_cols=258 Identities=15% Similarity=0.073 Sum_probs=180.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
.-+.+.|++.+|.-.|+..+.. +|. +..+|..|.......++-..|+..+.+..+.... +....-.|.-.|...
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 3467789999999999999887 553 7889999999999999999999999999886332 566666777778877
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCcccc--CCHhhHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCCCCHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICH--PDVLSYCSIINSLCKDVLVDKAKELFLDM-KSRGIIPDVVVYSSLI 321 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~ll 321 (531)
|.-..|.. .++.............. ++...-.. ..+.....+....++|-++ ...+..+|+.+...|-
T Consensus 367 g~q~~Al~-------~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 367 GLQNQALK-------MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred hhHHHHHH-------HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 77666666 66666443311111000 00000000 1112222234444555444 4445456777788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK 401 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 401 (531)
-.|--.|++++|.+.|+..+...+. |...||.|...++...+.++|+..|.+.++ +.|.
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~------------------ 496 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG------------------ 496 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC------------------
Confidence 8889999999999999999987654 889999999999999999999999999987 3443
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh---C------CCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 402 FELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR---Y------GPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 402 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
-+.+.-.|.-+|...|.+.+|.+.|-..+. . +..++...|..|=.++.-.++.+-+.
T Consensus 497 ---yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 497 ---YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred ---eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 345666788889999999999999877653 1 11223456666666666666666443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-05 Score=73.64 Aligned_cols=382 Identities=13% Similarity=-0.006 Sum_probs=176.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH---
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV--- 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~--- 143 (531)
+...|+..|-+..+..+. =...|..|...|....+...|.+.|....+.. ..+...+..+...|++..+++.|..
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 455555555555443332 22345555555555555555555555555443 2334444455555555555555444
Q ss_pred ---------------------------------HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038190 144 ---------------------------------ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRP 190 (531)
Q Consensus 144 ---------------------------------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 190 (531)
.|+...+..+. |...|..+..+|.++|++..|+++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 44444443322 5566777777777777777777777666654 33
Q ss_pred CCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 191 NVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
. +...---..-.-+..|.+.+|...+...... +..--..++..+...+...|-...+...++.+++.|.-.
T Consensus 628 ~---s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 628 L---SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred H---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1 2222122223345566777776666655432 111112223333333333344444444555555555444
Q ss_pred HhCCCCCCccccCCHhhHHHHHHHHhcCCCHH------HHHHH-HHHHHhCCCC--------------------CCHHHH
Q 038190 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVD------KAKEL-FLDMKSRGII--------------------PDVVVY 317 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~------~a~~~-~~~~~~~~~~--------------------~~~~~~ 317 (531)
.... ...+...|-.+-.+|.-.-..+ ....+ +.+....+.. .+..+|
T Consensus 705 l~h~------~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 705 LIHS------LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHh------hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 3332 1112222221111111000000 00000 1111111111 122233
Q ss_pred HHHHHHHHh----c----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 038190 318 SSLIDGYCL----M----GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------ 383 (531)
Q Consensus 318 ~~ll~~~~~----~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------ 383 (531)
..+...|.+ . .+...|...+.+..+..- -+..+|+.|.-. ...|.+.-|...|-.-... .|.
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~ 854 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWL 854 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhhee
Confidence 333322222 1 123356666666554321 255666665544 4446666665555443321 121
Q ss_pred --------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHh--hh--CCCCCcHHHHHHHHHHH
Q 038190 384 --------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL--PR--YGPEPNVVTYTVMICGL 451 (531)
Q Consensus 384 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~g~~p~~~~~~~l~~~~ 451 (531)
..+++.|.+.|.......+. |...|-.........|+.-++..+|..- .. .|-.|+..-|-+.....
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h 933 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIH 933 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHH
Confidence 56677777777776655322 5555655555555677777777777652 21 23344555555544455
Q ss_pred HHcCCHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDM 467 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~ 467 (531)
..+|+.++-+...+++
T Consensus 934 ~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 934 LQNGNIEESINTARKI 949 (1238)
T ss_pred HhccchHHHHHHhhhh
Confidence 5666666555444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00012 Score=64.22 Aligned_cols=341 Identities=12% Similarity=0.060 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVS-LNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~ 144 (531)
|.+.+|+.-|...++-+|. +-.++-.-...|...|+-..|+.=+.+.++. +||-.. -..-...+.+.|.++.|..-
T Consensus 52 ~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred hhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHH
Confidence 3789999999888775544 3333444445788889988898888888876 677532 22233467799999999999
Q ss_pred HHHHHHCCCCCCh--hhH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC
Q 038190 145 LGRILRKVFSPDV--VTL------------GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210 (531)
Q Consensus 145 ~~~~~~~~~~~~~--~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (531)
|+.+++..+..+. .++ ...+..+...|+...|+.....+++. .| .|...|..-..+|...|
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~---Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QP---WDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--Cc---chhHHHHHHHHHHHhcC
Confidence 9999987542111 111 22344566689999999999999875 33 47888888899999999
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh----HHH--
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS----YCS-- 284 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~-- 284 (531)
++..|+.=++...+..-. +..++--+-..+...|+.+.++. ..++..+.+ ||... |-.
T Consensus 204 e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~-------~iRECLKld--------pdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK-------EIRECLKLD--------PDHKLCFPFYKKLK 267 (504)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH-------HHHHHHccC--------cchhhHHHHHHHHH
Confidence 999999888777665333 45555566667788888888888 555554433 44322 111
Q ss_pred -------HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 285 -------IINSLCKDVLVDKAKELFLDMKSRGIIPDVV---VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 285 -------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-+......++|.++++-.+...+........ .+..+-.+|...|++.+|++...+.++.... |+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHH
Confidence 1233455778888888888887764332222 3444556677789999999999999876322 4778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPD--NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKL 432 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (531)
-..+|.-...++.|+.-|+...+.+-..+ ...++.|.++.+...+. | -|-+| +--+...-.+..+.|++|
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kR----D--YYKIL--GVkRnAsKqEI~KAYRKl 418 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKR----D--YYKIL--GVKRNASKQEITKAYRKL 418 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccc----h--HHHHh--hhcccccHHHHHHHHHHH
Confidence 88899999999999999999887542221 22334444443333322 1 22222 122333445566666666
Q ss_pred hhCCCCCc
Q 038190 433 PRYGPEPN 440 (531)
Q Consensus 433 ~~~g~~p~ 440 (531)
-.. ..||
T Consensus 419 Aqk-WHPD 425 (504)
T KOG0624|consen 419 AQK-WHPD 425 (504)
T ss_pred HHh-cCCc
Confidence 543 3454
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-08 Score=56.55 Aligned_cols=32 Identities=44% Similarity=0.928 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=56.24 Aligned_cols=33 Identities=39% Similarity=0.762 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
|+.||..+|++||.+||+.|++++|.++|++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678899999999999999999999999999984
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.5e-06 Score=71.90 Aligned_cols=187 Identities=14% Similarity=0.008 Sum_probs=130.8
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSY 352 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~ 352 (531)
.....+..+...+...|+++.|...|+++...... | ....+..+..++.+.|++++|...++++.+....... ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567778888899999999999999998876311 1 1246677888999999999999999999886433121 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 353 NTLINSYSKI--------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 353 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
..+..++... |++++|.+.|+.+.+. .|+......+......+... .......+...|.+.|++++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~----~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNR----LAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCChHH
Confidence 4555555544 7788999999988764 34433333333322222210 01122356778999999999
Q ss_pred HHHHHHHhhhCCC-CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGP-EP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 425 A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|...++...+... .| ....+..+..++...|++++|..+++.+..
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999987421 12 356888999999999999999888876543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.1e-05 Score=74.56 Aligned_cols=390 Identities=11% Similarity=0.026 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 038190 101 KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLF 180 (531)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 180 (531)
.+...++..|-+..+.. +-=...|..|...|+..-+...|.+.|+.+.+.... +...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 34777777777776553 222457999999999888999999999999887533 6678888889999988888888774
Q ss_pred HHHHHc-------------C---------------------CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 181 TKFVAF-------------D---------------------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 181 ~~~~~~-------------~---------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
-..-+. | ..| .|...|..++.+|.+.|.+..|.++|++....
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP---kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP---KDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc---hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 332211 1 122 46778889999999999999999999888764
Q ss_pred CCCCHhhHHHH--HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 IYPDAFVYNSL--IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 ~~p~~~~~~~l--i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.|+. +|... ...-+..|++.++...+...+..+..-.... .--..++-.+...+.-.|-..++.++++.
T Consensus 626 -rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q-------~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 626 -RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ-------NGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred -CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 3332 23222 2234556777777775555444433322211 11122233333333333333333333333
Q ss_pred HH-------hCCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHH-HHHhcCCCC--------------------CHH
Q 038190 305 MK-------SRGIIPDVVVYSSLIDGYCLMGRID------DARKLFV-SIESEGCIP--------------------DTS 350 (531)
Q Consensus 305 ~~-------~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~-~~~~~g~~p--------------------~~~ 350 (531)
-. ......+...|-.+-++|.-.-..+ ....+|. ++...+.-| +..
T Consensus 697 sie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~ 776 (1238)
T KOG1127|consen 697 SIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMY 776 (1238)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccc
Confidence 22 1111112222222222111000000 0001111 111111111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
+|..++..| ++.....+- +..+...|+..++..++..- .+..+|+.|.-. ..-|++.-|.-.|-
T Consensus 777 ~WyNLGiny------------lr~f~~l~e--t~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 777 PWYNLGINY------------LRYFLLLGE--TMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFI 840 (1238)
T ss_pred hHHHHhHHH------------HHHHHHcCC--cchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhh
Confidence 222222222 111111110 01122344444444443221 166677777666 55567776766665
Q ss_pred HhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HhhHHHHHHHHHHHH----HcCC
Q 038190 431 KLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-----------------IRECLKAIELLHKMA----KRYV 489 (531)
Q Consensus 431 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------i~~~~~a~~~~~~~~----~~~~ 489 (531)
+-... .+....+|..+...+.+..+++-|...|...+.. +|+.-++..+|..-. ..|-
T Consensus 841 ks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gk 919 (1238)
T KOG1127|consen 841 KSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGK 919 (1238)
T ss_pred hhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccc
Confidence 55543 1335667777777788888888888888776654 365666666665522 2344
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 490 KPDEITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 490 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
-++..-|-+........|++++-+.-.++++.-
T Consensus 920 a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 920 AKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred cchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 456666666666677778877766666655543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-05 Score=80.64 Aligned_cols=227 Identities=11% Similarity=0.020 Sum_probs=164.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCH---hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR-GIYPDA---FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGE 270 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~ 270 (531)
+...|-..|......++.++|.+++++.... ++.-.. -.|.++++.-..-|.-+...+ +|++..+..
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k-------VFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK-------VFERACQYC-- 1527 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH-------HHHHHHHhc--
Confidence 5667888888888899999999999888754 222122 235555554444444444444 777766643
Q ss_pred CCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CH
Q 038190 271 LGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DT 349 (531)
Q Consensus 271 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~ 349 (531)
-....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+.++.=++- ..
T Consensus 1528 ------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1528 ------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred ------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 23456888899999999999999999999886 33467888888999999999999999999887752221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
....-.+..-.+.|+.+.+..+|+....... --...|+.+++.-.++|+.+.++.+|
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-----------------------KRtDlW~VYid~eik~~~~~~vR~lf 1657 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYP-----------------------KRTDLWSVYIDMEIKHGDIKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-----------------------cchhHHHHHHHHHHccCCHHHHHHHH
Confidence 3344455566788999999999988876432 14578999999999999999999999
Q ss_pred HHhhhCCCCCc--HHHHHHHHHHHHHcCCHHHH
Q 038190 430 KKLPRYGPEPN--VVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 430 ~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A 460 (531)
++....++.|. -..|...+..--.+|+-..+
T Consensus 1658 eRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1658 ERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99998877765 34566666655566765444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=71.17 Aligned_cols=207 Identities=10% Similarity=0.015 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCc--chHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGV--SDAF 142 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~a~ 142 (531)
++.++|+.+.+.+++.+|. +..+|+.--..+...| ++++++..++++.+.. +-+..+|+....++.+.|.. +.+.
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3889999999999997776 6678887777777777 6899999999999876 44666788776666666653 6788
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc---CCh----hHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFV----NKV 215 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~a 215 (531)
.+++.+++.... +..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+. |.. ++.
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-----N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-----NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-----chhHHHHHHHHHHhccccccccccHHHH
Confidence 899999988644 8889999999999999999999999999987433 677888777666554 222 456
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
+....++..... -+...|+.+...+...+.. +....++.+.+.+....+ +.+......++..|+.
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~---l~~~~~~~~~~~~~~~~~-------~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEA---LVSDPEVSSVCLEVLSKD-------SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcc---cccchhHHHHHHHhhccc-------CCcHHHHHHHHHHHHh
Confidence 666666665432 2677787777777653221 111222333665554433 3456677777777764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-05 Score=64.17 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 421 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.+.+|.-+|++|.++ ..|++.+.+....++...|++++|..+++.
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 344555555555442 344555555555555555555555444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-06 Score=79.96 Aligned_cols=217 Identities=14% Similarity=0.061 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 237 (531)
..-..+...+...|-...|..+|+++. .|..++..|+..|+..+|..+..+..++ +||...|..+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 344456666777777777777776653 4677777777777777777776666652 4555555444
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
.+... -...+++|+++.+..... +-..+.......+++.++.+.|+.-.+.+ +.-..+|
T Consensus 464 GDv~~-------d~s~yEkawElsn~~sar-------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~w 522 (777)
T KOG1128|consen 464 GDVLH-------DPSLYEKAWELSNYISAR-------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTW 522 (777)
T ss_pred hhhcc-------ChHHHHHHHHHhhhhhHH-------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHH
Confidence 43332 334444455565543221 11112222233566777777766655442 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
-.+-.++.+.++++.|.+.|..-....+. +...||.+-.+|.+.++-.+|...+.+..+.+..
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---------------- 585 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---------------- 585 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC----------------
Confidence 55555666667777777777666654322 4556777777777777777777777666665433
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+..+|...+....+.|.+++|.+.+.++.+
T Consensus 586 -------~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 586 -------HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -------CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 334566666666677777777777776654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.6e-05 Score=78.49 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=138.4
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHC-CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSP---DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI 197 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 197 (531)
...|-..+....+.++.+.|..+.++++.. ++.- -...|.++++.-...|.-+...++|++..+.- + .-.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-----~~~ 1531 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-----AYT 1531 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-----hHH
Confidence 345666666666666666666666666542 1111 12356666666666666666677777766531 1 234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.|..|...|.+.+.+++|.++|+.|.++ +.-....|...+..+.+..+-+.|...+.+|++.+.. .-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk------------~e 1598 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK------------QE 1598 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch------------hh
Confidence 5666777777777777777777777654 2235566777777777776666666633333332111 00
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNTL 355 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~l 355 (531)
.+....-.+..-.+.|+.+.+..+|+...... +--...|+..+++-.+.|+.+.++.+|+++...++.|.. ..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 12233344445556777888888887777652 335667888888888888888888888888877766543 345555
Q ss_pred HHHHHhcCCHHHHHHH
Q 038190 356 INSYSKIEKVEEALSL 371 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~ 371 (531)
+..--+.|+-+.+..+
T Consensus 1678 LeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHhcCchhhHHHH
Confidence 6555555655444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5e-05 Score=77.23 Aligned_cols=268 Identities=10% Similarity=0.037 Sum_probs=175.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
+...+..|+..+...+++++|.++.+..... .|+ ....|-.+...+...++...+..+ .+... .+...-|.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~---~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKK---SISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCc---ceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 4567778888888888888888888866664 332 333444444466666665555544 22211 11111122
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVV 315 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (531)
.+- . +...+...+ -+..++..+..+|-+.|+.++|..+|+++.+.. +-|+.
T Consensus 101 ~ve-------------~-------~~~~i~~~~--------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~ 151 (906)
T PRK14720 101 IVE-------------H-------ICDKILLYG--------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPE 151 (906)
T ss_pred HHH-------------H-------HHHHHHhhh--------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHH
Confidence 111 1 222222222 234467778889999999999999999998886 44788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.|.+...|... ++++|..++.+.... |...+++..+.++|.++..... .+.+.-..+.+
T Consensus 152 aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~----~d~d~f~~i~~ 211 (906)
T PRK14720 152 IVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS----DDFDFFLRIER 211 (906)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc----ccchHHHHHHH
Confidence 888888888888 999998888777654 6666788888888888877432 24455556666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--H-
Q 038190 396 TLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK--I- 471 (531)
Q Consensus 396 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--i- 471 (531)
.+... +..--..++-.+-..|...++++++..+++.+.+.. +-|.....-++.+|. +.+.. -..|++..+. |
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~ 287 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIG 287 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccc
Confidence 66543 444556677788888999999999999999999853 235666777887776 33322 3444444443 2
Q ss_pred ---hhHHHHHHHHHHHH
Q 038190 472 ---RECLKAIELLHKMA 485 (531)
Q Consensus 472 ---~~~~~a~~~~~~~~ 485 (531)
..+..++.-|+...
T Consensus 288 ~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 288 NNRKPVKDCIADFEKNI 304 (906)
T ss_pred cCCccHHHHHHHHHHHe
Confidence 34456666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.5e-06 Score=70.94 Aligned_cols=149 Identities=9% Similarity=0.037 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+-+.+..+........++ +....+..+....+.|++..|+..+.+..... ++|..+|+.+.-+|.+.|+++.|...|.
T Consensus 81 ~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 81 DADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred cccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 344444444443322222 44444556666666677777777776666554 5666677777777777777777777776
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+..+.-+. +....|.+.-.|.-.|+.+.|..++......+. .|..+-..+.......|++++|.++...-.
T Consensus 159 qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 159 QALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-----ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 66665332 445566666666666777777776666655321 155556666666666677776666654433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00039 Score=64.18 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=138.1
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
..|+...+...+.+.........+..++.+..+. .-...-|..-+ .+...|++++|+..++.+...-+. |...+..
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~ 345 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLEL 345 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHH
Confidence 3456666666666554444333333333332221 11223333333 355679999999999999887432 5666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+.+.+.|+.++|.+.++++... .|+ .....-.+..+|.+.|++.+|..++++...
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~---------------------~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--DPN---------------------SPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCC---------------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 788999999999999999999874 232 356778899999999999999999999987
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 038190 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~ 487 (531)
. .+-|+..|..|..+|...|+..+|.....+....-|++++|+..+....+.
T Consensus 403 ~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 403 N-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred c-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5 355899999999999999999999999988888889999999999988864
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-06 Score=70.13 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=87.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH-HhcCC--hHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-CMQGK--FTEA 176 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a 176 (531)
.++.++++..++...+.. +.|...|..+...|...|+++.|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 566677777777776665 567777888888888888888888888888777543 666777777653 56666 4788
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+++++..+. .|+ +..++..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~--dP~---~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALAL--DAN---EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHh--CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888888776 342 6677777888888888888888888887765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-05 Score=71.06 Aligned_cols=157 Identities=14% Similarity=0.123 Sum_probs=108.4
Q ss_pred cCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcc----
Q 038190 65 EVELNDALCFFNYMIHMQPT-P-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKM---- 135 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~---- 135 (531)
.|++++|...|+++....|. | ...++..+..++.+.|++++|+..++++.+.. +.+.. ++..+..++.+.
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccc
Confidence 34899999999999886654 1 12467778888999999999999999998764 21222 455555555544
Q ss_pred ----CCcchHHHHHHHHHHCCCCCChhhHH-----------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCC
Q 038190 136 ----IGVSDAFVALGRILRKVFSPDVVTLG-----------------CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP 194 (531)
Q Consensus 136 ----g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 194 (531)
|+++.|...++.+.+..+. +...+. .+...|.+.|++++|+..+++.... .|+...
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 201 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN--YPDTPA 201 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--CCCCcc
Confidence 6788899999998876433 222221 3345567778888888888887765 222222
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
....+..+..++...|++++|..+++.+...
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567778888888888888888887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00033 Score=59.36 Aligned_cols=250 Identities=10% Similarity=0.032 Sum_probs=139.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
++-+.-.|++..++..-...... +-+...-..+-++|...|.+.....- ++. |-.+.......+...+..-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 34455567777777666655433 13444455556677776666544322 111 1133333333333333334444
Q ss_pred HHHHH-HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASG-LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+.-+. +.+.+...... .+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+
T Consensus 89 ~~~~~~l~E~~a~~~~~----sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 89 KSILASLYELVADSTDG----SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred HHHHHHHHHHHHhhccc----hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 33333332111 132333334456778888888888776622 22222222333445555555555
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 328 (531)
.++.|.+.+ +..|.+-|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|
T Consensus 159 -------~lk~mq~id---------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 159 -------ELKKMQQID---------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred -------HHHHHHccc---------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 777777654 45566666665543 45677888888888764 5778888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 038190 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA-LSLYGEMIS 377 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~ 377 (531)
++++|..+++..+..... ++.+...++.+-...|...++ .+.+..++.
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888888876544 555555555544455554333 344444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.2e-05 Score=76.14 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=134.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHH------------------HH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVA------------------LG 146 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~------------------~~ 146 (531)
+...|..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ +.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 5667888888888888888888888876665 3433 3333333455555555444433 11
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+... .-+..++..+..+|-+.|+.++|..+|+++.+.+ |. |..+.|.+...|+.. ++++|.+++.+....
T Consensus 108 ~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~---n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~- 178 (906)
T PRK14720 108 KILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD---NPEIVKKLATSYEEE-DKEKAITYLKKAIYR- 178 (906)
T ss_pred HHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-
Confidence 11111 1122344445555555555555555555555542 31 555555555555555 555555555554432
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
+....++..+.. +|..+.... | .+++.-..+.+.+.
T Consensus 179 --------------~i~~kq~~~~~e-------~W~k~~~~~--------~---------------~d~d~f~~i~~ki~ 214 (906)
T PRK14720 179 --------------FIKKKQYVGIEE-------IWSKLVHYN--------S---------------DDFDFFLRIERKVL 214 (906)
T ss_pred --------------HHhhhcchHHHH-------HHHHHHhcC--------c---------------ccchHHHHHHHHHH
Confidence 222222222222 444444332 1 12222233333333
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCc
Q 038190 307 SR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI-SMGVRPDN 384 (531)
Q Consensus 307 ~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ 384 (531)
.. |..--..++-.+-..|-...+++++..+++.+++.... |.....-++.+|.. .+.. ...|++.. -.|+.-..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~~--kY~~-~~~~ee~l~~s~l~~~~ 290 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYKE--KYKD-HSLLEDYLKMSDIGNNR 290 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHHH--HccC-cchHHHHHHHhccccCC
Confidence 33 22233445556666777788888888888888887544 66666777777752 2222 22233222 23444444
Q ss_pred ccHHHHHHHHHHHH
Q 038190 385 SCILEAAELFRTLH 398 (531)
Q Consensus 385 ~~~~~a~~~~~~~~ 398 (531)
..+..++..|+...
T Consensus 291 ~~~~~~i~~fek~i 304 (906)
T PRK14720 291 KPVKDCIADFEKNI 304 (906)
T ss_pred ccHHHHHHHHHHHe
Confidence 55666666666543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00039 Score=67.22 Aligned_cols=100 Identities=8% Similarity=0.018 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHc
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL-HKMAKR 487 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~-~~~~~~ 487 (531)
|+.-.+.-...|++..|..++-+.. +|+. .+.-|...+-|.+|+++-+...-+ ......+-+ ++..+.
T Consensus 1082 ~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~--q~a~iqeeyek~~~k~ 1150 (1636)
T KOG3616|consen 1082 LTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPH--QAAAIQEEYEKEALKK 1150 (1636)
T ss_pred HhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChh--HHHHHHHHHHHHHHhc
Confidence 3444444455666666666654444 3442 344555667777777776654332 000011111 122333
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 488 YVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
|-+ ....+..-.+-...+|+|.+|...+-++.
T Consensus 1151 gar-gvd~fvaqak~weq~gd~rkav~~~lkin 1182 (1636)
T KOG3616|consen 1151 GAR-GVDGFVAQAKEWEQAGDWRKAVDALLKIN 1182 (1636)
T ss_pred ccc-ccHHHHHHHHHHHhcccHHHHHHHHhhhc
Confidence 432 33445555566667777777777766653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.5e-06 Score=65.08 Aligned_cols=109 Identities=12% Similarity=-0.053 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 72 LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
..+|++..+.+ |+ .+..+..++.+.|++++|...|.+..... +.+..+|..+..++.+.|++++|...|+.+...
T Consensus 13 ~~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45666666533 33 24556777888899999999999888775 557778888888888899999999999998887
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 152 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+ .+...+..+..++...|++++|+..|+.....
T Consensus 88 ~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 DA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54 37778888888888899999999999888875
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00019 Score=69.27 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=103.3
Q ss_pred HHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 129 MNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 129 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
+.+......|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|.+. ..++..|.+|.+
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-------------~~~~dai~my~k 803 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-------------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-------------chhHHHHHHHhc
Confidence 334445566777777777666542 22335566667777777777777777543 235566777777
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHH
Q 038190 209 DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (531)
.|+|+.|.++-.+... .......|.+-..-.-+.|++.+|.+ ++-.+. .|+ ..|.+
T Consensus 804 ~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeq-------lyiti~----------~p~-----~aiqm 859 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQ-------LYITIG----------EPD-----KAIQM 859 (1636)
T ss_pred cccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhh-------eeEEcc----------Cch-----HHHHH
Confidence 7777777776655442 22334444444444555566555555 332211 122 24556
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
|-+.|..+..+++.++-... .-..|...+..-|-..|++..|...|-+..+ |.+.++.|-..+-|++|
T Consensus 860 ydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDA 927 (1636)
T ss_pred HHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHH
Confidence 66666666666555432211 1123444455556666666666665543322 33444455555555555
Q ss_pred HHH
Q 038190 369 LSL 371 (531)
Q Consensus 369 ~~~ 371 (531)
.++
T Consensus 928 yri 930 (1636)
T KOG3616|consen 928 YRI 930 (1636)
T ss_pred HHH
Confidence 443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00012 Score=73.87 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.+...+-.|.....+.|.+++|..+++...+. .|+ ......+..++.+.+++++|...+++.....+. +......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34555566666666666666666666666554 333 344455555666666666666666666655433 44444555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..++.+.|++++|..+|+++...+ |+ +..++..+..++...|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~---------------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PE---------------------FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CC---------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666665522 11 455666666666666666666666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=68.47 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HccCC--cchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF-CKMIG--VSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~a 141 (531)
.++.+++...++...+.+|. +...|..+...|...|+++.|+..|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45788999999999888776 88899999999999999999999999998876 55777888888764 66676 5899
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
..++++.++..+. +..++..+...+...|++++|+..|+++...
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999998655 7788888999999999999999999999876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00038 Score=64.25 Aligned_cols=122 Identities=12% Similarity=-0.026 Sum_probs=84.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 038190 286 INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD-TSSYNTLINSYSKIEK 364 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~ 364 (531)
...+...|+++.|+..++.+.+. .+-|+..+....+.+.+.++.++|.+.++++.... |+ ...+-.+..+|.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCC
Confidence 33445677778888888777765 33355566666677788888888888888877763 44 4555666777888888
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
+.+|+.++++..... | -|+..|..|.++|...|+..+|.....++.
T Consensus 390 ~~eai~~L~~~~~~~--p---------------------~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 390 PQEAIRILNRYLFND--P---------------------EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hHHHHHHHHHHhhcC--C---------------------CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888777776542 2 267778888888888777777776665544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-05 Score=63.88 Aligned_cols=158 Identities=13% Similarity=0.051 Sum_probs=93.9
Q ss_pred HHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH
Q 038190 126 NILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG 205 (531)
Q Consensus 126 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (531)
..+-..+...|+-+....+........ .-+....+.++....+.|++..|+..|.+.... .| +|..+|+.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p---~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--AP---TDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CC---CChhhhhHHHHH
Confidence 445555556666666666655543321 234455556667777777777777777776654 34 366777777777
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (531)
|.+.|+++.|..-|.+..+.... +...++.+.-.+.-.|+.+.|.. ++....... .-|...-..+
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~-------lll~a~l~~-------~ad~~v~~NL 208 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAET-------LLLPAYLSP-------AADSRVRQNL 208 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHH-------HHHHHHhCC-------CCchHHHHHH
Confidence 77777777777777666654222 34445555555666666666666 555544443 2345555556
Q ss_pred HHHHhcCCCHHHHHHHHHH
Q 038190 286 INSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~ 304 (531)
.......|++++|..+...
T Consensus 209 Al~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHhhcCChHHHHhhccc
Confidence 6666666666666665543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=76.41 Aligned_cols=212 Identities=12% Similarity=-0.017 Sum_probs=112.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+...|-...|+.+++++. .|.-+|.+|+..|+..+|..+..+-++. +|+...|..+.+.....--
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 4444555556666666665543 4555566666666666666666655553 4555566655555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-..-.+..+.+++..+..
T Consensus 473 yEkawElsn~~sar-----------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-----------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHhhhhhHH-----------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 55666655554321 11122222233566666666665544321 1133444444444445555554444
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.|..-.... +-+...||++-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++
T Consensus 541 -------aF~rcvtL~-------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 541 -------AFHRCVTLE-------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred -------HHHHHhhcC-------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 444444432 2234556666666666666666666666666655 2244445555555566666666
Q ss_pred HHHHHHHHHh
Q 038190 333 ARKLFVSIES 342 (531)
Q Consensus 333 a~~~~~~~~~ 342 (531)
|.+.+.++..
T Consensus 606 a~~A~~rll~ 615 (777)
T KOG1128|consen 606 AIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0017 Score=60.82 Aligned_cols=367 Identities=13% Similarity=0.086 Sum_probs=216.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-CCcch----H
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-IGVSD----A 141 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~----a 141 (531)
.+++++..++++...-|. +...|..-|..-...++++....+|.+.+.. ..+...|..-+..-.+. |+... .
T Consensus 34 ~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m 110 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKM 110 (656)
T ss_pred CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHH
Confidence 699999999999874444 5678999999999999999999999999876 35666777777654432 33333 2
Q ss_pred HHHHHHHH-HCCCCCC-hhhHHHHHHHH---------HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH------HH
Q 038190 142 FVALGRIL-RKVFSPD-VVTLGCLIRGL---------CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI------ID 204 (531)
Q Consensus 142 ~~~~~~~~-~~~~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------~~ 204 (531)
.+.|+-.+ +.|+++- -..|+..+..+ ....+++...+++.++.. .|-.. =...|+-. |+
T Consensus 111 ~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~---tPm~n-lEkLW~DY~~fE~~IN 186 (656)
T KOG1914|consen 111 VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV---TPMHN-LEKLWKDYEAFEQEIN 186 (656)
T ss_pred HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc---Ccccc-HHHHHHHHHHHHHHHH
Confidence 23344333 3454332 23455544432 233355666677777664 22110 01122211 11
Q ss_pred HH-------HhcCChhHHHHHHHHHhh--CCCCCCHhh---------------HHHHHH---------------------
Q 038190 205 GL-------CKDGFVNKVRVLFLDMKG--RGIYPDAFV---------------YNSLIR--------------------- 239 (531)
Q Consensus 205 ~~-------~~~~~~~~a~~~~~~m~~--~g~~p~~~~---------------~~~li~--------------------- 239 (531)
.. -+...+..|.++++++.. +|+.....+ |-.+|.
T Consensus 187 ~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~y 266 (656)
T KOG1914|consen 187 IITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMY 266 (656)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHH
Confidence 11 112334455555555432 232211111 222221
Q ss_pred ----------------------------HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 240 ----------------------------VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 240 ----------------------------~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
.+...|+..+|...-+++..+++.....- ..-+..+|..+...-..
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l------~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL------LKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhHHH
Confidence 22233444444444444444444443322 12223333333221111
Q ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 038190 292 D---VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-DTSSYNTLINSYSKIEKVEE 367 (531)
Q Consensus 292 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-~~~~~~~li~~~~~~~~~~~ 367 (531)
. .+.+....++++....-..--+.+|..+|+...+..-+..|..+|.+..+.+..+ ++..++++++-||. ++.+-
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~ 419 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKET 419 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhH
Confidence 1 1245555666666554322234567778888888888999999999999887776 67777888887765 67888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc--HHHHH
Q 038190 368 ALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN--VVTYT 445 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~ 445 (531)
|.++|+--.+.- .-++.-....++-+...++-..|..+|++....++.|+ ...|.
T Consensus 420 AfrIFeLGLkkf-----------------------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 420 AFRIFELGLKKF-----------------------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred HHHHHHHHHHhc-----------------------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 899987654421 11445557778888888888889999999887755555 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 446 VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.++.--..-|+...++++-+++...
T Consensus 477 r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8888888888888887776665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.3e-05 Score=60.06 Aligned_cols=108 Identities=12% Similarity=0.022 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038190 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 379 (531)
.+++...+. .|+ .+..+...+...|++++|...|+......+. +...|..+..++...|++++|...|+...+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l- 87 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML- 87 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 455555544 233 3445667778888888898888888877543 6778888888888888999988888888763
Q ss_pred CCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 380 VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.|+ +...+..+..++...|++++|...|+...+.
T Consensus 88 -~p~---------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 -DAS---------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCC---------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333 7788888888888889999999988888874
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0043 Score=61.81 Aligned_cols=415 Identities=15% Similarity=0.093 Sum_probs=234.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
++..|+.....+.+..|+ ..|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn---~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPN---ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 799999999999886654 234555555 45889999999999988776644 888999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC-C---------hhH
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG-F---------VNK 214 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 214 (531)
|++.... .|+......+..+|.+.+++.+-.++--++-+. .|. +...|-++++.+...- . ..-
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPK---RAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCc---ccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999877 566777777888899988776544333233221 221 4555555555554431 1 223
Q ss_pred HHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHH-HHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 215 VRVLFLDMKGRG-IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHE-EFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 215 a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
|.+.++.+.+.+ -.-+..-...-...+...|++++|.. ++. ...+.- ..-+...-+.-+..+...
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~-------~l~~~la~~l------~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALE-------FLAITLAEKL------TSANLYLENKKLDLLKLL 239 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHH-------HHHHHHHHhc------cccchHHHHHHHHHHHHh
Confidence 556666666553 21122222222334455666666666 652 222222 223344445567778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------------HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY----------------CLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----------------~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
+++.+..++-.++...|. |. |...++.+ ...+..+...+..++..... ....|-+-+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~l 312 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARL 312 (932)
T ss_pred cChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHH
Confidence 999999888888888753 32 32222211 11223333333333333321 112233333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCC----------cccHHHHHHHHHHHHhCCCCC--CHH---HHHHHHHHHHc
Q 038190 357 NSY---SKIEKVEEALSLYGEMISMGVRPD----------NSCILEAAELFRTLHNTKFEL--DLT---VFNCLVDGLCK 418 (531)
Q Consensus 357 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~~~~~~ 418 (531)
.++ -.-|+.+++...|-+-. |-.|- .-...+-..+........... |.. -+.+.+..-..
T Consensus 313 el~kr~~~~gd~ee~~~~y~~kf--g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl 390 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKKF--GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRL 390 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHHh--CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHH
Confidence 333 34577777665553321 22221 122233333443333221110 111 12222333333
Q ss_pred CCC-----hHHHHHHHHHhh---hCC------CCCcH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHH
Q 038190 419 SWR-----LRSAWELFKKLP---RYG------PEPNV---------VTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECL 475 (531)
Q Consensus 419 ~g~-----~~~A~~~~~~~~---~~g------~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~ 475 (531)
.|. .+.-..++.+.. +.| +-|+. .+.+.|++.|.+.++... +-
T Consensus 391 ~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~--------------l~ 456 (932)
T KOG2053|consen 391 LGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTD--------------LF 456 (932)
T ss_pred hhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHH--------------HH
Confidence 342 233444444332 223 22232 234567777777777652 23
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 476 KAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 476 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
+|+-+++...... +.|..+--.+++.|.-.|-+..|.++++.+--+++..+++
T Consensus 457 eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl 509 (932)
T KOG2053|consen 457 EAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL 509 (932)
T ss_pred HHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc
Confidence 4566666655433 2345555568888888899999999999988888877764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=74.32 Aligned_cols=133 Identities=9% Similarity=-0.009 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
++.++-.|.....+.|.+++|..+++...+.. +-+...+..+..++.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 45566666666666677777777777766653 333445666666666777777777777776666433 5555566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++.+.|++++|..+|+++... .|+ +..++..+...+...|+.++|...|+...+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~---~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPE---FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666777777777777776653 221 4556666666666777777777777666553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-05 Score=60.78 Aligned_cols=110 Identities=12% Similarity=-0.015 Sum_probs=79.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|+.+....+. +......+...+.+.|++++|...|+.+...+ +.+...+..+...+...|+++.|..+++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34555554443 44556666677778888888888888887765 4566777778888888888888888888877765
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+.+...+..+..++...|++++|...|+.....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 335666777777888888888888888887775
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00013 Score=67.80 Aligned_cols=128 Identities=16% Similarity=0.027 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
...|+..+...++++.|..+|+++.+.. +.....++..+...++-.+|.+++++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--------------------------pev~~~LA~v~l~~~~E~~AI~ll~~ 225 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--------------------------PEVAVLLARVYLLMNEEVEAIRLLNE 225 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--------------------------CcHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3455566666788888888888887642 23555678888888888889999888
Q ss_pred hhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChh
Q 038190 432 LPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDENCH 510 (531)
Q Consensus 432 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 510 (531)
..... +-+...+......|.+.++++.|+++.+++.+. .|+ ..+|..|+.+|...|+++
T Consensus 226 aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-------------------sP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 226 ALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL-------------------SPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHhcCCHH
Confidence 88642 235666666667788888888887776665542 344 568999999999999999
Q ss_pred HHHhhHHHhhhcchh
Q 038190 511 ECMNLLPSFLSRNQE 525 (531)
Q Consensus 511 ~a~~~~~~~~~~~~~ 525 (531)
+|+..++.+|.....
T Consensus 286 ~ALlaLNs~Pm~~~~ 300 (395)
T PF09295_consen 286 NALLALNSCPMLTYK 300 (395)
T ss_pred HHHHHHhcCcCCCCc
Confidence 999999988866433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00024 Score=66.09 Aligned_cols=126 Identities=20% Similarity=0.213 Sum_probs=104.1
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.....++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+.... +......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 345567777888899999999999999873 44 4455788888889999999999998876433 666666677789
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+.++++.|+.+.+++.+. .|+ +..+|..|..+|...|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~---------------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPS---------------------EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--Cch---------------------hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999874 343 67899999999999999999999998876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-06 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=47.72 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPD 121 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 121 (531)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=47.77 Aligned_cols=34 Identities=50% Similarity=0.885 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV 441 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 441 (531)
+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00014 Score=57.68 Aligned_cols=117 Identities=11% Similarity=-0.047 Sum_probs=92.6
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038190 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188 (531)
Q Consensus 109 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 188 (531)
.++++.+.. +.+......+...+...|++++|...++.+...++ .+...+..+...+...|++++|...+++....
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-- 80 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-- 80 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 455555543 23445666777888899999999999999988763 37788889999999999999999999998876
Q ss_pred CCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
.| .+...+..+...+...|++++|...|+...+. .|+...+
T Consensus 81 ~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 81 DP---DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred CC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 34 26778888899999999999999999998875 3444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.1e-06 Score=47.13 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLP 120 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 120 (531)
.+|+.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0003 Score=56.40 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC
Q 038190 327 MGRIDDARKLFVSIESEGCIPD--TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (531)
.++...+...++.+.+...... ....-.+...+...|++++|...|+........+ ..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--------------------~l 83 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--------------------EL 83 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--------------------HH
Confidence 5666677666777666532211 1122233455666777777777777766643111 00
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.......|...+...|++++|+..++..... ......+....+.|.+.|++++|+..|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223445666777777777777777664432 22344556667777777777777776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0093 Score=54.87 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=77.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HccC
Q 038190 64 GEVELNDALCFFNYMIHMQPT-PF----MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF--CKMI 136 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~--~~~g 136 (531)
.++++.+|..+|.++...... |. ...-+.++++|..+ +.+.....+..+.+. .| ...|-.+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 456888888888887664322 11 11234566666543 444444444444433 12 33444555443 3667
Q ss_pred CcchHHHHHHHHHHC--CCCC---C---------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 137 GVSDAFVALGRILRK--VFSP---D---------VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~--~~~~---~---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.+..|.+.+..-... +..+ + -..-+..+.++...|++.++..+++++...-.......++.+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665543 2221 1 1112344566677777777777777777665554444566666665
Q ss_pred HHHHHh
Q 038190 203 IDGLCK 208 (531)
Q Consensus 203 ~~~~~~ 208 (531)
+-.+.+
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.018 Score=57.58 Aligned_cols=193 Identities=10% Similarity=0.025 Sum_probs=128.6
Q ss_pred CCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchH
Q 038190 62 KSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 62 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 141 (531)
.-+.|+.++|..+++.....++. |..+...+-..|...++.++|..+|++.... .|+......++.+|.+.+++..-
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33578999999999988776665 8889999999999999999999999999876 57788888999999998887765
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQGK----------FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
.++--++-+.- +-+...+=++++.+...-. ..-|.+.++.+...+..- -+..-...-...+...|.
T Consensus 130 Qkaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~---~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 130 QKAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKI---ESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCcc---chHHHHHHHHHHHHhccc
Confidence 55544444432 2244444345555444321 234556666666643111 122233334455667888
Q ss_pred hhHHHHHHH-HHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 212 VNKVRVLFL-DMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 212 ~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+++|.+++. ...+.-...+...-+.-+..+...++|.+..+ +-.++...+
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~-------l~~~Ll~k~ 256 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE-------LSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH-------HHHHHHHhC
Confidence 999999994 44443333344444566677777777777666 666666655
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00075 Score=63.22 Aligned_cols=108 Identities=16% Similarity=0.169 Sum_probs=91.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR--GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYN 353 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~ 353 (531)
+.+......+++.+....+.+.+..++...... ....-..|..++++.|.+.|..+.+..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 456667777888888888899999999888776 232334566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 354 TLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
.|+..+.+.|++..|.++...|...+...+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~ 172 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDN 172 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999987766554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0054 Score=51.88 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=30.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|.+++|+++++.+.+.+ |. |.+++--=+...-..|..-+|++-+....+. +..|...|.-+...|...|+++.
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt---~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PT---DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred hhchhhHHHHHHHHhccC--cc---hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHH
Confidence 344444444444444431 21 3334433333333334433444444333332 22244444444444443333333
Q ss_pred hh
Q 038190 250 AK 251 (531)
Q Consensus 250 a~ 251 (531)
|.
T Consensus 173 A~ 174 (289)
T KOG3060|consen 173 AA 174 (289)
T ss_pred HH
Confidence 33
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00029 Score=56.50 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=86.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh--hhHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV--VTLGCL 163 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 163 (531)
.|..++..+ ..++...+...++.+.... +.+.. ..-.+...+...|++++|...|+.+......++. .....|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344445444 4778888888888887764 22322 3334456677889999999999998887633332 244556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..++...|++++|+..++..... + .....+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~---~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE---A---FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc---c---hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888889999999888664321 1 24556777888889999999998888753
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0065 Score=51.40 Aligned_cols=199 Identities=11% Similarity=-0.019 Sum_probs=138.8
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHc---C-CCCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038190 57 LSENSKSGEVELNDALCFFNYMIHM---Q-PTPFM-PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC 131 (531)
Q Consensus 57 l~~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 131 (531)
+.........+.++..++++.+... + ..++. ..|..++-+....|+.+.|...++++...- +-+...-..-...
T Consensus 17 ~~~wr~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 17 MRKWREETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAML 95 (289)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence 3344556667899999999998763 2 23333 356667777888999999999999998763 2232222222223
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
+-..|++++|.++|+..++.. +.|..++---+.+.-..|+..+|++-+...... -+ .|..+|.-+...|...|+
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~---~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FM---NDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hc---CcHHHHHHHHHHHHhHhH
Confidence 445689999999999999886 346677777777777788888888887777664 23 289999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 212 VNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+++|.-.++++.-. .| +...+..+...+.-.|. ...++.+.++|.+..+..
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhC
Confidence 99999999999864 33 44444455555444432 233444555666666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=59.04 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 35567777777777777777777777777766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00029 Score=51.23 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDVVVYSSLIDGYCLMG--------RIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++.....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999888753 356778899999999999999999
Q ss_pred HHHHHHHHh
Q 038190 353 NTLINSYSK 361 (531)
Q Consensus 353 ~~li~~~~~ 361 (531)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00048 Score=64.45 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTI--GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCL 163 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (531)
+......++..+....+++.+..++-+.... ....-+.|.+++++.|.+.|..+.++.++..=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444455555555555555555555555433 11222334445555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++.+.+.|++..|.++...|...
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh
Confidence 55555555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.011 Score=57.28 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=59.0
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
+|+.+...++....|+.|.+.|..-.. . ...+.+|.+..++++-..+...+.+ +....-.+.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe---------~s~llp~~a 859 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPE---------DSELLPVMA 859 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCc---------ccchHHHHH
Confidence 455555555555556666555543211 1 1244555555555544444444332 566677788
Q ss_pred HHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
.++.+.|..++|.+.|-+...- ...++.|....+|.+|.+
T Consensus 860 ~mf~svGMC~qAV~a~Lr~s~p---------kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 860 DMFTSVGMCDQAVEAYLRRSLP---------KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHhhchHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHH
Confidence 8888888888888777544321 234567777777766665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.004 Score=56.38 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=73.9
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CH
Q 038190 281 SYCSIINSLCKD-VLVDKAKELFLDMKSR----GII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-----DT 349 (531)
Q Consensus 281 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----~~ 349 (531)
.+..+...|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|+++...-... +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566666666 7777777777765542 200 012345566677788888888888888876543221 11
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCChHHHH
Q 038190 350 S-SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK--SWRLRSAW 426 (531)
Q Consensus 350 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~ 426 (531)
. .|-..+-++...|++..|...+++......... -.........|+.+|-. ...++.|+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~------------------~s~E~~~~~~l~~A~~~~D~e~f~~av 257 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA------------------SSREYKFLEDLLEAYEEGDVEAFTEAV 257 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST------------------TSHHHHHHHHHHHHHHTT-CCCHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC------------------CcHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1 222334466667888888888888765321110 01123345556666643 33466666
Q ss_pred HHHHHhhh
Q 038190 427 ELFKKLPR 434 (531)
Q Consensus 427 ~~~~~~~~ 434 (531)
.-|+.+.+
T Consensus 258 ~~~d~~~~ 265 (282)
T PF14938_consen 258 AEYDSISR 265 (282)
T ss_dssp HHHTTSS-
T ss_pred HHHcccCc
Confidence 66666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.4e-05 Score=42.81 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=50.99 Aligned_cols=97 Identities=12% Similarity=-0.067 Sum_probs=44.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLL--PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIR 165 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~ 165 (531)
+..+...+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+....+.. ...++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444455555555555555555443200 012233444455555555555555555554432211 1223444444
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.9e-05 Score=42.15 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=22.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGL 118 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 118 (531)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.023 Score=49.91 Aligned_cols=178 Identities=9% Similarity=-0.009 Sum_probs=118.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY---SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
+-.....+...|++++|.+.|+.+...... +.... -.+..+|.+.++++.|...+++..+..+.-...-|...+.+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 333455567789999999999999886322 22332 45567788999999999999999887544333344444444
Q ss_pred HHh--c---------------CC---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 359 YSK--I---------------EK---VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 359 ~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
.+. . .+ ..+|+..|+++++. -|+..-..+|...+..+.+. =...--.+...|.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~ 187 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTK 187 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 321 1 12 24566777777763 56656666666555544421 01122356777999
Q ss_pred CCChHHHHHHHHHhhhC--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 419 SWRLRSAWELFKKLPRY--GPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 419 ~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.|.+..|..-++.+++. +.+........++.+|...|..++|.+....
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999873 3333456677888999999999998766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0016 Score=58.91 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
|...+..|...|++..|-+++..+-+ .|... |+++.|...|.+|.++|+.-.. ...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------~~~ 153 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGS--------PHS 153 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT---------HHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCC--------hhh
Confidence 33344556777887777766665543 45555 7888899988888888876331 112
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC-
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-----DVV-VYSSLIDGYCLMGRIDDARKLFVSIESEG--CIPD- 348 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~p~- 348 (531)
-..++..+...+.+.|++++|.++|+++....... +.. .+-..+-++...||+..|.+.|++..... +..+
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 24467778889999999999999999988753321 222 22333446677899999999999987653 2212
Q ss_pred -HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 038190 349 -TSSYNTLINSYSKI--EKVEEALSLYGEMI 376 (531)
Q Consensus 349 -~~~~~~li~~~~~~--~~~~~a~~~~~~~~ 376 (531)
......|+.+|-.. ..+..++.-|+.+.
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 34456677777542 35666666665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.7e-05 Score=54.42 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPT-PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
|+++.|+.+|+++.+..+. ++...|..+..++.+.|++++|+.++++ .+.+ +.+......+..++.+.|++++|+.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666666666666665542 2333444456666666666666666665 2221 11223333445566666666666666
Q ss_pred HHH
Q 038190 145 LGR 147 (531)
Q Consensus 145 ~~~ 147 (531)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00053 Score=50.16 Aligned_cols=94 Identities=14% Similarity=0.039 Sum_probs=57.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|...++...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4445555666677777777777666543 233355566666666667777777777666665422 33455666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVA 185 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~ 185 (531)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6777777666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0013 Score=47.98 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=70.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~ 486 (531)
+-...|..+...+++...-.+|+.+++.|+ -|...+|+.++.+.++..--..++ = .+.-..+.+|+.|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i--e-------~kl~~LLtvYqDiL~ 97 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI--E-------NKLTNLLTVYQDILS 97 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH--H-------HHHHHHHHHHHHHHH
Confidence 334556677777999999999999999999 999999999999887543221111 1 133456889999999
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q 038190 487 RYVKPDEITVSILEELLNK 505 (531)
Q Consensus 487 ~~~~~~~~~~~~l~~~~~~ 505 (531)
.+++|+..+|+.++..+.+
T Consensus 98 ~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 98 NKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hccCCcHHHHHHHHHHHHH
Confidence 9999999999999998875
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0017 Score=50.05 Aligned_cols=102 Identities=18% Similarity=0.030 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
.++..+...+.+.|++++|...|+.+...... .....+..+..++.+.|+++.|...|+.+.... |+......++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHH
Confidence 34556667777788888888888888765322 113455667788888888888888888877652 32212345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+..++...|+.++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 77778888888888888888887763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0017 Score=53.74 Aligned_cols=109 Identities=13% Similarity=-0.019 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS 236 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 236 (531)
...|..+...+...|++++|+..|++.......+ .....+|..+...+...|++++|+..++...... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 3445555566666677777777776665542111 0123456666666777777777777776666431 112334444
Q ss_pred HHHHHH-------hcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 237 LIRVYC-------CAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 237 li~~~~-------~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+...+. ..|+++.|...+++++.+++......
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444 77888888888888888888887654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00082 Score=62.85 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|+++.|++.|+++++..+. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++.|...
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34677777777777666554 55566666666677777777777777776654 33555666666666677777777777
Q ss_pred HHHHHHCC
Q 038190 145 LGRILRKV 152 (531)
Q Consensus 145 ~~~~~~~~ 152 (531)
|+..++..
T Consensus 93 ~~~al~l~ 100 (356)
T PLN03088 93 LEKGASLA 100 (356)
T ss_pred HHHHHHhC
Confidence 77766653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0028 Score=52.40 Aligned_cols=107 Identities=15% Similarity=-0.022 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+...+...|++++|...|++.......+ .....++..+..+|...|++++|...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------------~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------------YDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456666777777888888888888876532111 01235788888888899999999999
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038190 429 FKKLPRYGPEPNVVTYTVMICGLC-------IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAK 486 (531)
Q Consensus 429 ~~~~~~~g~~p~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~ 486 (531)
+++..... +....++..+...+. ..|+++.|+..+ ++|..++++...
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~----------~~a~~~~~~a~~ 148 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF----------DQAAEYWKQAIA 148 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 98888641 223455666666666 777777776655 456677777764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.032 Score=50.83 Aligned_cols=275 Identities=13% Similarity=0.032 Sum_probs=146.8
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
+.+..++..|+..+..+++..+. +..-|..-...+...|++++|.--.+.-++. +++ ......-.-+.+...++
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~---~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDG---FSKGQLREGQCHLALSD 132 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCC---ccccccchhhhhhhhHH
Confidence 34455666666667666666543 4555555555566666666665544443332 221 12223333333334444
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH-HHHHh
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI-INSLC 290 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 290 (531)
..+|.+.++ +...+ .. ..++. .++.+..... -+|...++..+ ..++.
T Consensus 133 ~i~A~~~~~---------~~~~~-~~----------anal~-------~~~~~~~s~s-----~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-KA----------ANALP-------TLEKLAPSHS-----REPACFKAKLLKAECLA 180 (486)
T ss_pred HHHHHHHhh---------hhhhh-HH----------hhhhh-------hhhccccccc-----CCchhhHHHHhhhhhhh
Confidence 444444443 11111 00 00111 2222222210 12333334333 23455
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCHHHH-------------HHH
Q 038190 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGY--CLMGRIDDARKLFVSIESEGCIPDTSSY-------------NTL 355 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~p~~~~~-------------~~l 355 (531)
-.|++++|..+--.+++.. ....+...+++. --.++.+.+...|++.+..+ |+...- ..=
T Consensus 181 ~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 6777777777766666542 122333333332 23567788888888777654 222211 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.+-..+.|.+..|.+.|.+.+. +.| .+..++...|.....+..+.|+..+|+.-.++....
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~--idP-----------------~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALN--IDP-----------------SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhc--CCc-----------------cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 1223456677777777766654 333 245668888988899999999999999999988863
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+. ...|-.-..++...++|++|++-|++..+.
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222 122333344566788999999999887765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=57.68 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS-YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
+|..+++...+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|..+|+...+. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f------------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--F------------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--H-------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--C-------------
Confidence 445555555555555555555555553321 122223222222 12234444455555555442 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV---VTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+...|...++.+.+.|+.+.|..+|++.... +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 67 --------~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 67 --------PSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp --------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 114555555555556666666666666665543 22221 35555555555566666555555554443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00075 Score=53.17 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|.......+. +...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3445556666778899999999999988765 446667778888888899999999999999888754 77788888999
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 038190 167 LCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~ 187 (531)
+...|+.+.|.+.|+..+...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999888753
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.061 Score=49.16 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-..+... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--------------- 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--------------- 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC---------------
Confidence 33444555566666666666654442 25666677777777777777665544221 10
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
.+.-|..++.+|.+.|+..+|..+..++. +..-+..|.+.|++.+|.+.--+
T Consensus 236 ---------sPIGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 236 ---------SPIGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred ---------CCCChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 33456666777777777777776666522 13345566667777766655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.003 Score=52.36 Aligned_cols=91 Identities=11% Similarity=-0.056 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
...|..+...+...|++++|+..|++..+....+. ...+..+..++.+.|+++.|...++++++..+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 33566666667777777777777777765432221 345666666777777777777777777665322 344555556
Q ss_pred HHHHhcCChHHHHH
Q 038190 165 RGLCMQGKFTEASG 178 (531)
Q Consensus 165 ~~~~~~g~~~~a~~ 178 (531)
.++...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 66666666555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0047 Score=55.91 Aligned_cols=138 Identities=15% Similarity=0.046 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIE----SEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~----~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
.|..|-+.|--.|+++.|+...+.-+ +.|-. .....+..+..++.-.|+++.|.+.|..-.. .|
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~-----------LA 265 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN-----------LA 265 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH-----------HH
Confidence 45555566666789999987766422 22322 2345677888899999999999998876532 12
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-----CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-----GPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+++-++.. .....-+|...|.-..+++.|+.++.+-+.. ...-....+-+|..++...|..++|+.+.+
T Consensus 266 ielg~r~v------EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 266 IELGNRTV------EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHhcchhH------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22222222 2334567888888889999999998865431 112245678889999999999999998887
Q ss_pred HHHHH
Q 038190 466 DMEEK 470 (531)
Q Consensus 466 ~~~~~ 470 (531)
.-.+.
T Consensus 340 ~hl~~ 344 (639)
T KOG1130|consen 340 LHLRS 344 (639)
T ss_pred HHHHH
Confidence 76655
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=50.90 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=78.3
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
....+...+...|++++|..+|+.+....+. +..-|-.|.-++-..|++.+|+..|......+ |+ |...+-.+.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~d---dp~~~~~ag 110 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--ID---APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CC---CchHHHHHH
Confidence 3444555666889999999999998887644 66677778888889999999999999988874 43 788888899
Q ss_pred HHHHhcCChhHHHHHHHHHhhC
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++...|+.+.|.+.|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999987765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=59.45 Aligned_cols=91 Identities=7% Similarity=-0.117 Sum_probs=75.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
...+...|+++.|+++|+++++.. +.+...|..+..+|...|+++.|+..+++++...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 445667789999999999998875 456778888888888999999999999999887533 667788888889999999
Q ss_pred HHHHHHHHHHHHc
Q 038190 174 TEASGLFTKFVAF 186 (531)
Q Consensus 174 ~~a~~~~~~~~~~ 186 (531)
++|+..|++....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.044 Score=48.13 Aligned_cols=61 Identities=16% Similarity=-0.012 Sum_probs=34.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHccCCcchHHHHHHHHHHCCCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSL---NILMNCFCKMIGVSDAFVALGRILRKVFS 154 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (531)
....+...|++++|++.|+.+...- +-+..+. -.++.++.+.++++.|...+++.++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 3344455667777777777766543 1112221 33445556667777777777666665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0026 Score=52.68 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCHhhHHHHHHHHhc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 038190 277 PDVLSYCSIINSLCK-----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM----------------GRIDDARK 335 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~ 335 (531)
.+-.+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 567788888888864 477888888899999999999999999999987542 24578999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 038190 336 LFVSIESEGCIPDTSSYNTLINSYSKIEK 364 (531)
Q Consensus 336 ~~~~~~~~g~~p~~~~~~~li~~~~~~~~ 364 (531)
++++|...|+.||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999976654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=59.21 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----C
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----G 309 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~ 309 (531)
|..+-..|.-.|+++.|+...+.-+.+-+++-.. .....++..+.+++.-.|+++.|.+.|+..... |
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr--------AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR--------AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH--------HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 4444444555566666655444433333333221 233567888999999999999999988865432 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--
Q 038190 310 -IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE----G-CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVR-- 381 (531)
Q Consensus 310 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-- 381 (531)
-......+-.|.+.|.-..++++|+..+.+-+.. + ..-....+.+|..+|...|..++|+.+.+.-.+....
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~ 349 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVN 349 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 1223455667777888888899998888763321 1 0114567788999999999999999887765543222
Q ss_pred CCcccHHHHHHHHHHHHhCC
Q 038190 382 PDNSCILEAAELFRTLHNTK 401 (531)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~ 401 (531)
-..|.+..-..+.+.....|
T Consensus 350 D~sgelTar~Nlsdl~~~lG 369 (639)
T KOG1130|consen 350 DTSGELTARDNLSDLILELG 369 (639)
T ss_pred CcchhhhhhhhhHHHHHHhC
Confidence 12333333344444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.033 Score=44.83 Aligned_cols=162 Identities=13% Similarity=0.087 Sum_probs=111.9
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
.+..+.=|++....-..+-.+ +.|+..-...|..++.+.|+..+|...|++...--+..|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 334444444444333333222 356777777888999999999999999999887656667788888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcch
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNT 254 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 254 (531)
.|...++.+.+.. |. ..+..+.-.+.+.+...|.+..|...|+..... -|+...-......+.+.|+.+++..
T Consensus 142 ~a~~tLe~l~e~~--pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a-- 214 (251)
T COG4700 142 AAQQTLEDLMEYN--PA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA-- 214 (251)
T ss_pred HHHHHHHHHhhcC--Cc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH--
Confidence 9999999998753 21 124445666788899999999999999998875 3444333333445667777777665
Q ss_pred HHHHHHHHHHHh
Q 038190 255 SAALELHEEFVN 266 (531)
Q Consensus 255 ~~a~~~~~~~~~ 266 (531)
+..++++.+.+
T Consensus 215 -q~~~v~d~~~r 225 (251)
T COG4700 215 -QYVAVVDTAKR 225 (251)
T ss_pred -HHHHHHHHHHh
Confidence 33335555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0038 Score=51.76 Aligned_cols=116 Identities=10% Similarity=-0.052 Sum_probs=76.7
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (531)
...+..+...+...|++++|...|+++++....+. ...+..+..++.+.|++++|+..+++.... .|. +...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPK---QPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc---cHHHH
Confidence 34566666677777888888888877776543322 346677777777788888888877777765 332 56666
Q ss_pred HHHHHHHHhcCC--------------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 200 ASIIDGLCKDGF--------------VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 200 ~~l~~~~~~~~~--------------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
..+...+...|+ +++|.+++++.... +...|..++..+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 677777777666 67788888777776 23335555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0015 Score=58.78 Aligned_cols=133 Identities=13% Similarity=-0.003 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.+|-.+|+..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888999999999998654 2233444444443 22346777799999998876 45578888899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCC-cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+...|+.+.|..+|++.... -+. .. ....|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764 211 01 2358999999889999999999999888874
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=50.85 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
+...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..+|...|++++|++.|++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 445566689999999999999999998 33211 2334455668889999999999998875
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0023 Score=46.66 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++...+.... +...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 5567778888999999999999988763 234467778888899999999999999998886543 45678888899999
Q ss_pred cCCHHHHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMIS 377 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~ 377 (531)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999988765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.11 Score=51.24 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.+.+--+..+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk--------------------------ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK--------------------------IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC--------------------------CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 344455555666677777766654432 235666766777777777777766665
Q ss_pred HHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+..+ .+.-|.-.+.+|.+.|+.++|.+++.
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhh
Confidence 5544 24456667777778888777766664
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0081 Score=45.67 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=24.8
Q ss_pred HHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
++-..|+.++|..+|++.+..|+... ...+-.+...+...|++++|+.+|++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555544443322 12333344444445555555555554443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.095 Score=48.46 Aligned_cols=92 Identities=13% Similarity=0.030 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 73 CFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
++-+++ +.+|. |..+|-.|+.-+..++.+++..+++++|..- ++--..+|..-+.+-....++..+..+|.+-+...
T Consensus 30 rLRerI-kdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERI-KDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHh-hcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444 34455 8889999999999999999999999999743 23344577777777777789999999999988774
Q ss_pred CCCChhhHHHHHHHHHh
Q 038190 153 FSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 153 ~~~~~~~~~~li~~~~~ 169 (531)
+ +...|...+..--+
T Consensus 107 l--~ldLW~lYl~YIRr 121 (660)
T COG5107 107 L--NLDLWMLYLEYIRR 121 (660)
T ss_pred c--cHhHHHHHHHHHHh
Confidence 4 46666666654433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.047 Score=46.61 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=91.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 038190 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242 (531)
Q Consensus 163 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 242 (531)
....+...|++.+|...|+.+... -|...--..+.-.++.++-+.|+++.|...++.+.+.-..-...-+...+.+.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 344556677777777777777765 232222344555667777777777777777777665311111112222222222
Q ss_pred hcCChhh------hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038190 243 CAVNWED------AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316 (531)
Q Consensus 243 ~~~~~~~------a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (531)
....... -.....+|+.. +..++.-|-...-..+|...+..+.+. =..-
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~---------------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~ 143 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEE---------------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEH 143 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHH---------------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHH
T ss_pred HHHhCccchhcccChHHHHHHHHH---------------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHH
Confidence 1111111 11112222223 444445555555556665555554432 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT----SSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~~~~~~a~ 369 (531)
--.+...|.+.|.+..|..-++.+++.= |+. .....++.+|.+.|..+.+.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1234567888999999999888888762 333 34566778888888877443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0032 Score=54.67 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=42.2
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 344555555555555555442 124444444455555555555555555554443211 233445555555555555555
Q ss_pred HHHHHHHHh
Q 038190 369 LSLYGEMIS 377 (531)
Q Consensus 369 ~~~~~~~~~ 377 (531)
++.|++.++
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=56.84 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 309 GIIPDVVVYSSLIDGYCL--MG---RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 309 ~~~~~~~~~~~ll~~~~~--~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+.+.+...|...+++... .+ +...|..+|++..+..+. ....|..+..+|.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 345677888888887443 33 377999999999987433 3444554444332211110 00
Q ss_pred -cccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 384 -NSCILEAAELFRTLHNT-KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 384 -~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
...+..+.+........ ....+...|.++.-.+...|++++|...++++.+. .|+...|..+...+...|+.++|.
T Consensus 396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11122222222222221 12336678888887888889999999999999985 578899999999999999999998
Q ss_pred HHHHHHHH
Q 038190 462 DLLPDMEE 469 (531)
Q Consensus 462 ~~~~~~~~ 469 (531)
+.+++...
T Consensus 474 ~~~~~A~~ 481 (517)
T PRK10153 474 DAYSTAFN 481 (517)
T ss_pred HHHHHHHh
Confidence 88876543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0032 Score=54.71 Aligned_cols=86 Identities=16% Similarity=0.046 Sum_probs=45.0
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
.+.++|.+|+..|.+.++.. +-|...|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 34455555555555555543 334444555555555555555555555555544321 3345555555555555555555
Q ss_pred HHHHHHHH
Q 038190 178 GLFTKFVA 185 (531)
Q Consensus 178 ~~~~~~~~ 185 (531)
+.|++.+.
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.013 Score=51.42 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=60.1
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG---KFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
+-|...|-.|..+|...|+++.|...|.+..+... ++...+..+..++.... +..++..+|+++... +|. |
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~---~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPA---N 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCc---c
Confidence 44566666666666666666666666666666532 25555555554443332 344566666666655 332 5
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+.+...|...+...|++.+|...|+.|.+.
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 556666666666666666666666666665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.13 Score=47.73 Aligned_cols=376 Identities=15% Similarity=0.124 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HccCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGAL--AGKKYYVNFICLSERLNTI--GLLP------------DFVSLNILMN 130 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~ 130 (531)
+++.....+....+..+ ...|-.+..++ -+.+.+..|++.+..-... +..+ |-..-+..+.
T Consensus 60 nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFG---KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 45555555555544322 23455555543 3778899999988877654 3221 2222345667
Q ss_pred HHHccCCcchHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (531)
++...|++.++..+++++...-++ .+..+|+.++-.++++ .|-++.+. ...+..|+ |..++-.|
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~-~s~dl~pd---yYemilfY 204 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKES-MSSDLYPD---YYEMILFY 204 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHh-cccccChH---HHHHHHHH
Confidence 788999999999999988775444 7899999999888764 33333221 11111122 44444444
Q ss_pred Hhc-C--------ChhHHHHHHHHHhhCC-CCCCHh--hHHHHHHHHH---hcCChhh--------hhcchHHHHHHHHH
Q 038190 207 CKD-G--------FVNKVRVLFLDMKGRG-IYPDAF--VYNSLIRVYC---CAVNWED--------AKGNTSAALELHEE 263 (531)
Q Consensus 207 ~~~-~--------~~~~a~~~~~~m~~~g-~~p~~~--~~~~li~~~~---~~~~~~~--------a~~~~~~a~~~~~~ 263 (531)
.+. . .+.-...++..+.+.= +.|-.. .+..++..+- ...+.+- .....+++..+.+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 432 1 1111233333332220 111100 0111111110 0000110 11111222222222
Q ss_pred HHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHh-cC---CHHH
Q 038190 264 FVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY-------SSLIDGYCL-MG---RIDD 332 (531)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~-~g---~~~~ 332 (531)
+.... .......=+.+|..++....+.++...|.+.+.-+.-. .|+...- ..+-+..+. .. +..+
T Consensus 285 ia~~~--i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 285 IASSK--IEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 22111 00000111335566666666666666666666555443 3332211 111222221 11 1122
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHhCCCCCC---------------------cccH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLIN---SYSKIEK-VEEALSLYGEMISMGVRPD---------------------NSCI 387 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~---~~~~~~~-~~~a~~~~~~~~~~~~~~~---------------------~~~~ 387 (531)
=..+|+.+...++. .......|+. -+-+.|. -++|+++++.+.+- .+. ...+
T Consensus 361 yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 361 YLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 23333333333221 0111111221 2223333 66677777666542 111 2223
Q ss_pred HHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 038190 388 LEAAELFRTLHNTKFELD----LTVFNCLVDG--LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
.....+-+.+.+.|+.|- ...-|.|.++ +...|++.++.-+-..+.+ +.|++.+|..+.-++....++++|.
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 333344444556666653 3344555444 3568899998887777776 6889999999988888899999998
Q ss_pred HHHHH
Q 038190 462 DLLPD 466 (531)
Q Consensus 462 ~~~~~ 466 (531)
.++..
T Consensus 516 ~~l~~ 520 (549)
T PF07079_consen 516 EYLQK 520 (549)
T ss_pred HHHHh
Confidence 88764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.12 Score=47.29 Aligned_cols=265 Identities=16% Similarity=0.075 Sum_probs=141.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
+.++..|+..+...++..|. ++..|..-...+...+++++|+--.+.-.+.. +-....+...-+++...++..+|...
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHH
Confidence 34778888888888877665 45566555556666677777766555544332 11112333333333333443333333
Q ss_pred HH------------HHHH---CC-CCCChhhHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH--
Q 038190 145 LG------------RILR---KV-FSPDVVTLGCL-IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-- 205 (531)
Q Consensus 145 ~~------------~~~~---~~-~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 205 (531)
++ ...+ .. -+|....+..+ ..++.-.|+.++|.++--.+.+.+ ....+..++++
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-------~~n~~al~vrg~~ 212 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-------ATNAEALYVRGLC 212 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-------cchhHHHHhcccc
Confidence 32 1111 00 01222333332 244555667777666665555542 11223333332
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI 285 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (531)
+--.++.+.+...|++.+.. .|+...-..+-..+ + .++.+...
T Consensus 213 ~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~----------k-------~le~~k~~------------------ 255 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRL--DPDHQKSKSASMMP----------K-------KLEVKKER------------------ 255 (486)
T ss_pred cccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhH----------H-------HHHHHHhh------------------
Confidence 23345666666666665543 23322211111000 1 22222222
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHH
Q 038190 286 INSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY---NTLINSY 359 (531)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~---~~li~~~ 359 (531)
.+-..+.|.+..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+..... |..-. ..-..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 23345788888888888887754 35556667777777778888888888888877765 33322 2223456
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 038190 360 SKIEKVEEALSLYGEMISMG 379 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~ 379 (531)
...++|++|++-|+...+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66788888888888776643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.017 Score=56.77 Aligned_cols=143 Identities=10% Similarity=-0.103 Sum_probs=98.1
Q ss_pred CCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC--------cchHHHHHHHHH
Q 038190 83 PTPFMPSFNSLLGALAGK-----KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG--------VSDAFVALGRIL 149 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~~~ 149 (531)
+..+..+|...+++.... ++...|+.+|++..+.. +-....|..+..++..... +..+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 445778999999885532 23779999999999874 3345566655554433221 223333344433
Q ss_pred HC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 038190 150 RK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 150 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 228 (531)
.. ....+..+|..+.-.....|++++|...+++..... |+...|..+...+...|+.++|.+.|++.... .
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 32 123355677777777777899999999999998863 36778999999999999999999999998765 3
Q ss_pred CCHhhH
Q 038190 229 PDAFVY 234 (531)
Q Consensus 229 p~~~~~ 234 (531)
|...||
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.19 Score=49.27 Aligned_cols=215 Identities=12% Similarity=0.009 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----------HccCC
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF----------CKMIG 137 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~ 137 (531)
+++|.++.+ -.|-...|..+.....+.-.++.|...|-+... .+.......|-..+ +--|.
T Consensus 679 ledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGE 749 (1189)
T ss_pred hHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcc
Confidence 566665554 335667888888877777777777777665533 12221111111111 12378
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (531)
+++|.++|-.|.++. ..|..+.+.||+-.+.++++.= |...+...-..+|+.+...++....|++|.+
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887765542 2456677778877766665331 1111111124578888888888888888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH
Q 038190 218 LFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK 297 (531)
Q Consensus 218 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 297 (531)
.|..-... ...+.++.+...+++-+. +.+. .+-+....-.+..++...|.-++
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~-------la~~-----------Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEV-------LART-----------LPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHH-------HHHh-----------cCcccchHHHHHHHHHhhchHHH
Confidence 77654321 223445554443333222 2222 23344455566677777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 298 AKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVS 339 (531)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 339 (531)
|.+.|-+ .+. | .+.+..|....++.+|.++-+.
T Consensus 871 AV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 871 AVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 7665532 211 1 1223445555555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=47.15 Aligned_cols=63 Identities=16% Similarity=0.026 Sum_probs=37.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+|..+...-...|+.+.|..+++. .|+..-- +..+.+.|+.+.| +.+..+.| .||. +|..|+.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DL-i~~vLl~ 64 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDL-IYLVLLH 64 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHH---HHHHHHcC-CccH-HHHHHHH
Confidence 466677777788888888887653 5655322 3444556665555 55666665 3332 4444444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.054 Score=46.25 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGI--IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
-.....+...|++.+|...|+.+..... +--....-.++.++.+.|+++.|...++++.+.-+.-...-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3455667789999999999999987621 22244556677889999999999999999887643322222222222221
Q ss_pred -------------hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 361 -------------KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 361 -------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
..+...+|...|+.+++. -|+..-..+|...+..+.+. =...--.+...|.+.|.+..|..
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 112345677777777763 46666666666655554421 01122346778999999999999
Q ss_pred HHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHH
Q 038190 428 LFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 428 ~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A 460 (531)
-++.+++. -|+ ......++.+|.+.|..+.|
T Consensus 163 r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 163 RFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 99998874 233 34556778888888887754
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.019 Score=43.64 Aligned_cols=107 Identities=19% Similarity=0.040 Sum_probs=73.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHHHHH
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIRGLC 168 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~ 168 (531)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677899999999999988886544 3356667778888899999999998887763221 2223333445677
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
..|+.++|++.+-..... +...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~--------~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE--------TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 889999998887766542 4445555555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.075 Score=42.91 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 038190 310 IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILE 389 (531)
Q Consensus 310 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 389 (531)
+.|++..-..|..+....|++.+|...|++...--+.-|....-.+.++....+++..|...++++.+.. |.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa------ 156 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PA------ 156 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Cc------
Confidence 4678777888889999999999999999998875455677788888888899999999999999988754 21
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 390 AAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
+ .++...-.+.+.|...|.+..|+.-|+..... -|+...-......+.+.|+.++|..-+..
T Consensus 157 -----------~--r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 157 -----------F--RSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred -----------c--CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 1 13344556788899999999999999999985 56655555555567788877777554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.001 Score=45.19 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI 116 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 116 (531)
.|++++|+++|+.+....|. +...+..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777776665 6666667777777777777777777777655
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.094 Score=50.75 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
.+++.....+++++|..+-++..+. .||+ |....+-++...++++|.+.|-+. |+.++|.++++++.
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaqwLAE~DrFeEAqkAfhkA----Gr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQWLAENDRFEEAQKAFHKA----GRQREAVQVLEQLT 844 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccc--cccc--cchHHHHhhhhhhHHHHHHHHHHh----cchHHHHHHHHHhh
Confidence 4556666777777777777766652 3332 223333344444444444444332 33344444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.067 Score=42.90 Aligned_cols=79 Identities=13% Similarity=0.225 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA- 485 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~- 485 (531)
.+...++..+...|++++|..+.+.+.... +-+...|..+|.+|...|+..+|++.|+++.+. +.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~-------------l~~ 128 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR-------------LRE 128 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-------------HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-------------HHH
Confidence 467778888999999999999999999852 347889999999999999999999999876553 22
Q ss_pred HcCCCCCHHHHHHH
Q 038190 486 KRYVKPDEITVSIL 499 (531)
Q Consensus 486 ~~~~~~~~~~~~~l 499 (531)
+.|+.|+..+-...
T Consensus 129 elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 129 ELGIEPSPETRALY 142 (146)
T ss_dssp HHS----HHHHHHH
T ss_pred HhCcCcCHHHHHHH
Confidence 45899998765443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.19 Score=45.68 Aligned_cols=288 Identities=14% Similarity=0.046 Sum_probs=182.5
Q ss_pred CCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH----HHHccC
Q 038190 63 SGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGA--LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMN----CFCKMI 136 (531)
Q Consensus 63 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~g 136 (531)
.+.|+-..|+++-.+..+. +.-|....-.|+.+ -.-.|+++.|.+-|+.|.. |+++-..=++ ..-+.|
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~G 168 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcc
Confidence 3567889998887776532 23355555555554 3356999999999999984 3334333333 334778
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH--hHHHHHHHHHh---cCC
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI--CYASIIDGLCK---DGF 211 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~---~~~ 211 (531)
+.+.|.++-+..-...+. -...+.+.+...+..|+++.|+++++.-....+.. +++. .-..|+.+-.. ..+
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie---~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE---KDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHhcCC
Confidence 999999888887766432 45688889999999999999999998876543222 2333 22233332221 234
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVY-NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
...|...-.+..+ +.||..-- .....++.+.|+..++-+ +++.+-+.. ..|++ + .+..+.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~-------ilE~aWK~e------PHP~i--a--~lY~~a 305 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK-------ILETAWKAE------PHPDI--A--LLYVRA 305 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh-------HHHHHHhcC------CChHH--H--HHHHHh
Confidence 5566665555443 34553322 233467888888888888 777777765 44543 2 233445
Q ss_pred cCCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 038190 291 KDVLVDKAKELFLDMKSR-GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-KIEKVEE 367 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~-~~~~~~~ 367 (531)
+.|+.. ..-++...+. ..+| +....-.+..+....|++..|..--+...+. .|....|-.|.+.-. ..|+-.+
T Consensus 306 r~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~ 381 (531)
T COG3898 306 RSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGK 381 (531)
T ss_pred cCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHH
Confidence 666532 2222222211 1223 5566667778888889999888877776654 577778877777554 4599999
Q ss_pred HHHHHHHHHhCCCCCC
Q 038190 368 ALSLYGEMISMGVRPD 383 (531)
Q Consensus 368 a~~~~~~~~~~~~~~~ 383 (531)
+...+.+..+.--.|.
T Consensus 382 vR~wlAqav~APrdPa 397 (531)
T COG3898 382 VRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHHHHhcCCCCCc
Confidence 9999888877554444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=42.10 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...+...|++++|...|+++++.. +-+...+..+..++...|++++|+..|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677889999999999999999864 22678888999999999999999888877654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=42.72 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEG-GIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 469 (531)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999863 236778899999999999 79999888877654
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.23 Score=45.20 Aligned_cols=300 Identities=13% Similarity=0.034 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--ccCCcchHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALA--GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC--KMIGVSDAF 142 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a~ 142 (531)
....+.+.|..-.+ ..-|..|-.++. -.|+-..|.++-.+.... +.-|......|+.+-. -.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKR------drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKR------DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHh------hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 34567777766543 123555554443 567888888877765422 2446666666666543 569999999
Q ss_pred HHHHHHHHCCCCCChh--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 143 VALGRILRKVFSPDVV--TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
+-|+.|... |... -...|.-.--+.|+.+.|...-++.-.. .|. -...+..++...|..|+|+.|+++++
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~---l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQ---LPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccC---CchHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999863 3332 2333444456789999999888887765 332 46899999999999999999999999
Q ss_pred HHhhCC-CCCCHhhH--HHHHHHHH---hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhh-HHHHHHHHhcCC
Q 038190 221 DMKGRG-IYPDAFVY--NSLIRVYC---CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS-YCSIINSLCKDV 293 (531)
Q Consensus 221 ~m~~~g-~~p~~~~~--~~li~~~~---~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~ 293 (531)
.-+... +.++..-- ..|+.+-. -..+...|.. .-.+..+ ..||... -.....++.+.|
T Consensus 213 ~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~-------~A~~a~K--------L~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 213 AQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD-------DALEANK--------LAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH-------HHHHHhh--------cCCccchHHHHHHHHHHhcc
Confidence 876542 34443322 22222211 1122333333 3333222 3455433 333467889999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCIP-DTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
+..++-.+++.+-+.. |.+..+. +..+.+.|+.. ..-+++.... .++| +..+.-.+.++-...|++..|..-
T Consensus 278 ~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 278 NLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred chhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999999884 4444333 33456667633 2222222211 1223 455556667777778888776654
Q ss_pred HHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCC
Q 038190 372 YGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFEL 404 (531)
Q Consensus 372 ~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~ 404 (531)
-+..... .|. .|+-.++.+.+.+.++..-.|
T Consensus 352 Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 352 AEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 4443321 222 356666777777776554444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=44.13 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILR 150 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 150 (531)
...|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|+..+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543 234445555555555555 45555555555544
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=44.06 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=23.9
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.|++++|...|+.+....+. +..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555444322 4444444555555555555555555555443
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.14 Score=49.61 Aligned_cols=141 Identities=12% Similarity=0.055 Sum_probs=81.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+.+...|+.++|..+.. +.+-.+.++.+-.++... +..+...+..-+.+...+.-|-++|..|-+
T Consensus 709 AAEmLiSaGe~~KAi~i~~---------d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD 775 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICG---------DHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD 775 (1081)
T ss_pred HHHHhhcccchhhhhhhhh---------cccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc
Confidence 3444555666666665432 122333333333333322 445666666666777788888899988764
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHh
Q 038190 435 YGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
. ..+++.....++|.+|..+-++..+-+.+.- --+. .+-....-+.-.-.+|.++|+-.||..
T Consensus 776 ~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy---~pya-----qwLAE~DrFeEAqkAfhkAGr~~EA~~ 838 (1081)
T KOG1538|consen 776 L---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY---MPYA-----QWLAENDRFEEAQKAFHKAGRQREAVQ 838 (1081)
T ss_pred H---------HHHhhheeecccchHhHhhhhhCcccccccc---chHH-----HHhhhhhhHHHHHHHHHHhcchHHHHH
Confidence 2 2466777788999999887766544310000 0000 000112224455678889999999999
Q ss_pred hHHHhhhcchh
Q 038190 515 LLPSFLSRNQE 525 (531)
Q Consensus 515 ~~~~~~~~~~~ 525 (531)
+++++......
T Consensus 839 vLeQLtnnav~ 849 (1081)
T KOG1538|consen 839 VLEQLTNNAVA 849 (1081)
T ss_pred HHHHhhhhhhh
Confidence 99988765443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.051 Score=47.74 Aligned_cols=117 Identities=13% Similarity=0.060 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCcchHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM---IGVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~ 143 (531)
..+....-++.-+..+|. |...|-.|..+|.+.|++..|..-|.+..+.- ++++..+..+..++... ....++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 567777777777777777 88899999999999999999999999988764 56677777666665433 34567888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|+++++..+. |+.+...|...+...|++.+|...|+.|...
T Consensus 215 ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 99999887543 6777777888899999999999999999876
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0029 Score=42.38 Aligned_cols=52 Identities=15% Similarity=0.032 Sum_probs=20.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+.++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444444444332 2233334444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.018 Score=50.93 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=68.1
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
.|...+....+.|++++|...|+.+++..+... ..++-.+..+|...|++++|...|+.+... .|+......++-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHH
Confidence 455555554566888888888888887643311 245666777888888888888888888765 3332234455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+...+...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777788888888888877764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.022 Score=50.49 Aligned_cols=103 Identities=8% Similarity=0.015 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~ 482 (531)
..|...+..+.+.|++++|...|+.+++. -|+ +..+..+..+|...|++++|+..|+.+.+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~------------ 209 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN------------ 209 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 44666666667789999999999999985 344 356778888899999999998887766543
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 483 KMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
-.+-......+-.++.++...|+.++|...++++....+..
T Consensus 210 ---yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 210 ---YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred ---CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 00111124556667888889999999999999887765544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.28 Score=42.11 Aligned_cols=144 Identities=15% Similarity=0.055 Sum_probs=107.0
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH---
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI--- 356 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li--- 356 (531)
...+.++..+...|.+.-....+.+..+...+-++.....|...-.+.||.+.|...|++..+..-+.+..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567788888888888889999999887767788888999999999999999999999877654444444444443
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 357 --NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 357 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+...|.+.++.|++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-----------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-----------------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-----------------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556678888888888776543 12556666666666677999999999999998
Q ss_pred CCCCCcHHHHHHHH
Q 038190 435 YGPEPNVVTYTVMI 448 (531)
Q Consensus 435 ~g~~p~~~~~~~l~ 448 (531)
. .|.+.+-++++
T Consensus 315 ~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 315 Q--DPRHYLHESVL 326 (366)
T ss_pred c--CCccchhhhHH
Confidence 4 56666555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0085 Score=41.91 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhC--CCC---Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRY--GPE---PN-VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+|+.+...|...|++++|+..|++..+. ... |+ ..++..+..+|...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457899999999999999999999988752 112 22 5678889999999999999999997654
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.5 Score=43.81 Aligned_cols=175 Identities=13% Similarity=0.033 Sum_probs=104.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRG---IIPDVVVYSSLIDGYCL---MGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+...++-+|....+++...++.+.+...- +.-+...-.....++.+ .|+.++|.+++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34466677999999999999999988751 11123333344455666 8999999999999766666678888887
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----hHHHHHHH-
Q 038190 355 LINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR----LRSAWELF- 429 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~- 429 (531)
+...|-. +-......+...+++|+..|.+..+.. ||...--.++..+...|. -.+..++-
T Consensus 223 ~GRIyKD-------------~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~ 287 (374)
T PF13281_consen 223 LGRIYKD-------------LFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGV 287 (374)
T ss_pred HHHHHHH-------------HHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHH
Confidence 7766532 111111123334566666666555443 343332222222333332 12233332
Q ss_pred ---HHhhhCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 430 ---KKLPRYG---PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 430 ---~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+.+.| -..+...+..++.++.-.|++++|.+.+++|...
T Consensus 288 ~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222233 2345566678888899999999988887776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.2 Score=39.98 Aligned_cols=64 Identities=9% Similarity=-0.118 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|..-|..|..+|-..+++++|...|......+. -|+..+-....++...|+.+.|...|+....
T Consensus 70 n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 70 NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 445556666666666666666666665544322 2444445556666666666666666554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.055 Score=41.63 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
..++..++.++++.|+.+....+++..- |+..+....... .-......|+..+..+++.+|+..|++..|+++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~-----~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGD-----YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCc-----cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 3455566666666666666655554432 222110000000 111345678999999999999999999999999
Q ss_pred HHHhhh-CCCCCcHHHHHHHHHHHHH
Q 038190 429 FKKLPR-YGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 429 ~~~~~~-~g~~p~~~~~~~l~~~~~~ 453 (531)
.+...+ .+++.+..+|..|+.-+..
T Consensus 75 vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 75 VDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999976 6788788999988875543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.1 Score=45.30 Aligned_cols=178 Identities=12% Similarity=0.057 Sum_probs=111.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC----FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
....-+..+.+..-++.|+.+...- + .+..+...+... +.+.|++++|...|-+.+.. ++|+ .+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3455666777777788887776543 2 344444444444 45789999999888776543 2322 356
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA 244 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 244 (531)
.-|.......+-..+++.+.+.|.. +..--..|+.+|.+.++.+.-.++.+... .|... .-....+..+.+.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-----~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~s 476 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-----NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKS 476 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-----cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHh
Confidence 6667777778888888999888766 45556779999999999998887776655 33221 1134455666666
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
+-.++|.. +-..... +... +--.+-..+++++|++++..+.
T Consensus 477 nyl~~a~~-------LA~k~~~-----------he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 477 NYLDEAEL-------LATKFKK-----------HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ChHHHHHH-------HHHHhcc-----------CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 55555543 3332211 1222 2333445678888888887653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.016 Score=46.50 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHh
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-----RGIYPDAF 232 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 232 (531)
.+...++..+...|++++|+.+++.+... .| -+...|..+|.+|...|+...|.++|+.+.. .|+.|+..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP---~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL--DP---YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--ST---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 35566788888999999999999999987 55 2788999999999999999999999988753 48888876
Q ss_pred hHH
Q 038190 233 VYN 235 (531)
Q Consensus 233 ~~~ 235 (531)
+-.
T Consensus 138 ~~~ 140 (146)
T PF03704_consen 138 TRA 140 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0066 Score=42.47 Aligned_cols=68 Identities=22% Similarity=0.290 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.+++.+...|...|++++|+..+++++++.+.+... .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777888888888888777777774443221 232 66788899999999999999999987654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=40.39 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=26.1
Q ss_pred HHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 131 CFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.|.+.++++.|..+++.++..++. +...+.....++...|++++|...|+.....
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444555555555555444322 4444444444555555555555555554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.5 Score=40.69 Aligned_cols=141 Identities=9% Similarity=-0.022 Sum_probs=93.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
...+.++..+...|.+.-...++++..+...+.++.....+.+.-.+.|+.+.+.. .|+...+..+.++. ..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-------yf~~vek~~~kL~~-~q 249 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEK-------YFQDVEKVTQKLDG-LQ 249 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHH-------HHHHHHHHHhhhhc-cc
Confidence 34566777777788888888999998887666678888888888889999888888 66665554421111 11
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
-...........|.-.+++..|...+.++....-. |+...|.-.-+..-.|+..+|.+..+.|....+.
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 11222223334556677888888888887766322 3333333333333358999999999999887433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=39.57 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=34.7
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
..|.+.++++.|++.++++...+ +.+...+.....++.+.|+++.|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34556666666666666666554 3355555566666666666666666666666553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.025 Score=45.01 Aligned_cols=92 Identities=8% Similarity=-0.195 Sum_probs=70.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
....+-+.|++++|..+|.-+...+ .-+..-|..|..++-..++++.|...|......+.. |....-....+|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3444557899999999999887765 345666777777777888999999998887776543 55556667888888999
Q ss_pred hHHHHHHHHHHHHc
Q 038190 173 FTEASGLFTKFVAF 186 (531)
Q Consensus 173 ~~~a~~~~~~~~~~ 186 (531)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999888873
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.074 Score=40.93 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-C
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFD-----------CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-R 225 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~ 225 (531)
.++.+++.++++.|+.+....+++..=.-+ ......|+..+..+++.+|+..+++..|.++++...+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555444332111 1222348999999999999999999999999999875 4
Q ss_pred CCCCCHhhHHHHHHHHHhcCC
Q 038190 226 GIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 226 g~~p~~~~~~~li~~~~~~~~ 246 (531)
+++.+..+|..|+..+....+
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 788889999999987665544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.8 Score=41.48 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 212 VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 212 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
+++...+++.|.+.|+.-+..+|-+....... .+..+.......+..+|+.|++..+-+ ..++...+..++.. .
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~~~ra~~iy~~mKk~H~fL---Ts~~D~~~a~lLA~--~ 151 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEIIQRAKEIYKEMKKKHPFL---TSPEDYPFAALLAM--T 151 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHHHHHHHHHHHHHHHhCccc---cCccchhHHHHHhc--c
Confidence 44566788889999999888777665444433 344445566778888999999877321 34556667766554 3
Q ss_pred CCC----HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 292 DVL----VDKAKELFLDMKSRGIIPDV--VVYSSLIDGYCLMGR--IDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 292 ~~~----~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.++ .+.++.+|+.+.+.|+..+- .....++..+-.... ..++.++++.+.+.|+++....|..+.-..
T Consensus 152 ~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 152 SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 333 35678888888887766542 333333333222222 457889999999999998888877665433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.41 Score=42.14 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=73.5
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE 175 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 175 (531)
.....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666665543 223445555666666666666666666665443211111122223444444444444
Q ss_pred HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCC
Q 038190 176 ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~ 246 (531)
...+-.+.-. +|+ |...-..+...+...|+.+.|.+.+-.+..+ |.. |...-..++..+...|.
T Consensus 222 ~~~l~~~~aa---dPd---d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAA---DPD---DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 4444444443 342 5555556666666666666666655444432 333 44444555555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=1.6 Score=43.58 Aligned_cols=317 Identities=12% Similarity=0.015 Sum_probs=170.5
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY---YVNFICLSERLNTIGLLPDFVSLNILM 129 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~~~~~~~~~li 129 (531)
++..|.... .+..|+++-..+...-.. +...|..-...+.+..+ -+.+..+-+++... . .+...|..+.
T Consensus 443 vi~Rl~~r~-----~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA 514 (829)
T KOG2280|consen 443 VIDRLVDRH-----LYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIA 514 (829)
T ss_pred hhHHHHhcc-----hhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHH
Confidence 445555544 788888888877431111 13344555555554422 22333333333322 2 3445677777
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH--
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFS----PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII-- 203 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 203 (531)
+.....|+++.|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+...- +...|...+
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~-------~~s~l~~~l~~ 587 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL-------NRSSLFMTLRN 587 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 7777889999988877653322211 122334445556667777777666665554321 111111111
Q ss_pred --------HHHHhc------------CChhHHHHHHH--HH----hhCCCCCCHhhHHHHHHHHHhcCChh---hhhcch
Q 038190 204 --------DGLCKD------------GFVNKVRVLFL--DM----KGRGIYPDAFVYNSLIRVYCCAVNWE---DAKGNT 254 (531)
Q Consensus 204 --------~~~~~~------------~~~~~a~~~~~--~m----~~~g~~p~~~~~~~li~~~~~~~~~~---~a~~~~ 254 (531)
.-+++. ++-.++..-|. .. ...|..|+ ......++.+..... ++.+..
T Consensus 588 ~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred chhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHH
Confidence 112221 11111111111 00 00122222 223334444443322 222222
Q ss_pred HHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038190 255 SAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDAR 334 (531)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 334 (531)
.+-+.+.+.+...-+ ......+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..+++++-+
T Consensus 665 ~kLl~lQ~~Le~q~~-----~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFG-----GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHhc-----cccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 233334444433221 12333455566667777888888888776654 568888888888999989888776
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 335 KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD 414 (531)
Q Consensus 335 ~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 414 (531)
++-+... .+.-|.-.+.+|.+.|+.++|.+++.+... +.-.+.
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-------------------------------l~ekv~ 778 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-------------------------------LQEKVK 778 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-------------------------------hHHHHH
Confidence 6654433 356677788999999999999888755421 115677
Q ss_pred HHHcCCChHHHHHHHHHhh
Q 038190 415 GLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~ 433 (531)
+|.+.|++.+|.++--+-.
T Consensus 779 ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 779 AYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHhccHHHHHHHHHHhc
Confidence 8888888888877655433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.12 Score=45.99 Aligned_cols=151 Identities=11% Similarity=0.021 Sum_probs=78.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----VTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 174 (531)
-+|++.+|-..|+++++.- +.|..++...=++|.-.|+.+.-...+++++..- .++. .+...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566666666666666542 4455556665666666666666666666665431 1222 22233334445566666
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCChhhhh
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---GIYPDAFVYNSLIRVYCCAVNWEDAK 251 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a~ 251 (531)
+|++.-++..+. ++. |..+-.++...+-..|++.++.+++.+-... +--.-...|-...-.+...+.++.|+
T Consensus 193 dAEk~A~ralqi--N~~---D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRF---DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred hHHHHHHhhccC--CCc---chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 666666665544 221 5666666666666666666666665543221 10011122222222344446666666
Q ss_pred cchHH
Q 038190 252 GNTSA 256 (531)
Q Consensus 252 ~~~~~ 256 (531)
+.|+.
T Consensus 268 eIyD~ 272 (491)
T KOG2610|consen 268 EIYDR 272 (491)
T ss_pred HHHHH
Confidence 65554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.071 Score=49.97 Aligned_cols=63 Identities=21% Similarity=0.125 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV----VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7788999999999999999999999999984 6664 3589999999999999999999988765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.53 Score=46.01 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=114.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDV-----VVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTS 350 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~ 350 (531)
.+..+++...-.||-+.+++.+....+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 35667888888999999999998876643 22111 223444443333 45788999999999886 46776
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 351 SYNTL-INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 351 ~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.|... .+.+...|++++|++.|++....... +. ......+--+...+.-.+++++|.+.|
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~------------~~-------Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSE------------WK-------QLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh------------HH-------hHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 66544 34667789999999999976532100 00 113345667888899999999999999
Q ss_pred HHhhhCCCCCcHHHHHHHHH-HHHHcCCH-------HHHHHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVVTYTVMIC-GLCIEGGI-------EKAYDLLPDMEEK 470 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~~ 470 (531)
.++.+.. .-...+|.-+.. ++...|+. ++|.++|.++...
T Consensus 329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999742 123444444333 34567888 8888888888776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=47.34 Aligned_cols=97 Identities=16% Similarity=0.081 Sum_probs=71.1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
..++..+.-++.+.+++..|+......+..+ ++|....-.-..+|...|+++.|+..|+++++..+. |...-+.|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 4467788889999999999999999998875 447777777788899999999999999999987433 33444444444
Q ss_pred HHhcCCHH-HHHHHHHHHHh
Q 038190 359 YSKIEKVE-EALSLYGEMIS 377 (531)
Q Consensus 359 ~~~~~~~~-~a~~~~~~~~~ 377 (531)
-.+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444433 33677777755
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.59 Score=37.04 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=75.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
...++..+...+.......+++.+...+ ..+...++.++..|++.. .......+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456666666677777777777777766 356667777777777653 2333333331 1233444556777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc-CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC 242 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 242 (531)
.+-++++.-++.++.. |...+..+... ++++.|.+++.+-. +...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~-------------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN-------------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC-------------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 7777777777766532 22233333333 67777777766521 5556666665554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=40.30 Aligned_cols=213 Identities=13% Similarity=0.015 Sum_probs=121.1
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHC--CCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCCCCcHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRK--VFSP---DVVTLGCLIRGLCMQGKFTEASGLFTKFVAF-DCRPNVIPNVI 197 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ 197 (531)
++..+..+.++.|.+++++..--..+.. ..+. -...|..+.+++-+.-++.+++.+-+.-... |..++..+. .
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g-q 123 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG-Q 123 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc-h
Confidence 4445555566666655554332111110 0011 1234555666666666666776665554432 112211111 2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC-----CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGRG-----IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELG 272 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 272 (531)
..-++..++...+.++++++.|+...... ......++..+-..|.+..+++++.-...+|.++.+...-.+..
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~-- 201 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS-- 201 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh--
Confidence 33446677777788888888888765421 12234567888888899999999888777877776665432200
Q ss_pred ccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 273 VICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS----RGIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIE 341 (531)
Q Consensus 273 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 341 (531)
..-.....-.|.-++...|....|.+..++..+ .|-.+ -......+.+.|...|+.+.|+.-|+...
T Consensus 202 --~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 202 --LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred --HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 000011122344566677777777777666544 34222 23345667788999999999988887754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.57 Score=36.58 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=72.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRG--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
.-.....+.|++++|.+.|+.+...- -+-....--.++.+|.+.|++++|...++++++..+.-...-|...+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34555668899999999999988762 1223456677888999999999999999999988665444556666666654
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHN 399 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 399 (531)
-...+. .+..+. +..-|.+....|..-|+.+++
T Consensus 95 ~~~~~~---~~~~~~--~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEG---SLQSFF--RSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhh---HHhhhc--ccccCcHHHHHHHHHHHHHHH
Confidence 433332 222332 344444555555555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.5 Score=39.66 Aligned_cols=174 Identities=11% Similarity=0.010 Sum_probs=97.5
Q ss_pred HhcCChhHHHHHHHHHhhCC--CCCCH------hhHHHHHHHHHhcC-ChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 207 CKDGFVNKVRVLFLDMKGRG--IYPDA------FVYNSLIRVYCCAV-NWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 207 ~~~~~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+.|+.+.|..++.+..... ..|+. ..|+.-... ...+ ++++|..-.++|.++++.-.+...........
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566677776666665432 22221 122222222 3344 77777777777777775522111100000112
Q ss_pred CHhhHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVD---KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-..++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+++.+|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 2346777888888877654 5666776665442 223455555567777789999999999999986221 3345555
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCCCCCC
Q 038190 355 LINSYS--KIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 355 li~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
++..+. .......|...+..+....+.|.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 555552 22344566677776666555553
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.2 Score=43.48 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHc-----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhHHHHH
Q 038190 405 DLTVFNCLVDGLCK-----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-IRECLKAI 478 (531)
Q Consensus 405 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-i~~~~~a~ 478 (531)
|-.+|-..+..+.. .+.++-.-..++.|.+.|+..|..+|+.|+..+=+..-... .+|++.--+ =...+-++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHHhhCchhhhHHH
Confidence 55666666666643 45666677778899999999999999999988755432221 222222111 14567789
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 038190 479 ELLHKMAKRYVKPDEITVSILEELLNKDEN 508 (531)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 508 (531)
.++++|...|+.||..+-..|+.++.+.|-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 999999999999999999999999999875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.77 Score=36.37 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
....++..+...+.......+++.+...+. .+....+.++..|++.+. .+....+.. . .+......++..|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHH
Confidence 345677777778888999999998888763 577888999999987643 344444432 1 23344455778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChHHHHHHHHHhhhCCCCC
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS-WRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~p 439 (531)
+.+.++++..++.++.. +...+..+... ++++.|.+++.+-.
T Consensus 81 ~~~l~~~~~~l~~k~~~-------------------------------~~~Al~~~l~~~~d~~~a~~~~~~~~------ 123 (140)
T smart00299 81 KAKLYEEAVELYKKDGN-------------------------------FKDAIVTLIEHLGNYEKAIEYFVKQN------ 123 (140)
T ss_pred HcCcHHHHHHHHHhhcC-------------------------------HHHHHHHHHHcccCHHHHHHHHHhCC------
Confidence 88888888888776522 22222333333 77777877776522
Q ss_pred cHHHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLC 452 (531)
Q Consensus 440 ~~~~~~~l~~~~~ 452 (531)
+...|..++..+.
T Consensus 124 ~~~lw~~~~~~~l 136 (140)
T smart00299 124 NPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHHH
Confidence 5567777766654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.13 Score=44.55 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+-++.++++|...|+-||..+-..|+.++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456666666666666666666666666666553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.28 Score=37.15 Aligned_cols=87 Identities=10% Similarity=-0.046 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHccCCcchH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV---SLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~a 141 (531)
.|+++.|++.|.+.+..-|. ...+||.-..++--+|+.++|++=+++.++..-..... .|..-...|...|+.+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 45888999998888876555 66788888888888888888888888887653222322 233333456677888888
Q ss_pred HHHHHHHHHCC
Q 038190 142 FVALGRILRKV 152 (531)
Q Consensus 142 ~~~~~~~~~~~ 152 (531)
..-|+..-+.|
T Consensus 135 R~DFe~AA~LG 145 (175)
T KOG4555|consen 135 RADFEAAAQLG 145 (175)
T ss_pred HHhHHHHHHhC
Confidence 88888877776
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.5 Score=38.73 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=79.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 445777777777777765554 4555566667777777777777777766433211111111223344444444444444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
+-...-.. +-|...-..+...+...|+.+.|++.+-.+...+..- .|...-..|+..+.-.|.-+.
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHHHHHHHHhcCCCCH
Confidence 44443332 2255566666677777777777777666665543222 144555556665555554333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.21 Score=46.94 Aligned_cols=64 Identities=16% Similarity=0.001 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
+...|+.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56788888888999999999999999888764 442 35888888888888888888888888875
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.1 Score=39.81 Aligned_cols=100 Identities=7% Similarity=-0.125 Sum_probs=66.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCC---CCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCM---QGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
..+...++-.|....+++...++.+.+...- +.-...+--...-++.+ .|+.++|++++..+...... ++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~----~~ 216 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN----PD 216 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC----CC
Confidence 3345566667888899999999999987651 11122233344556666 89999999999986554323 37
Q ss_pred HHhHHHHHHHHHhc---------CChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKD---------GFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~ 225 (531)
..+|..+.+.|-.. ...++|+..|.+.-+.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 77888888776432 2366777777766543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.94 Score=42.90 Aligned_cols=149 Identities=11% Similarity=-0.014 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHH---HcCCCCChhhHHHHHHHHH---------ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038190 66 VELNDALCFFNYMI---HMQPTPFMPSFNSLLGALA---------GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC 133 (531)
Q Consensus 66 g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 133 (531)
-..+.|+.+|.+.. +.+|. ...+|..+...+. ...+..+|.++.++..+.+ +-|+.+...+..+..
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 36788999999998 43332 2334433333222 2345667888888888887 678888888888888
Q ss_pred ccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 134 KMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 134 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
-.++++.|..+|++....++. ...+|-.....+.-+|+.++|.+.+++..+. .|.. .-.......+..|+..+ .+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~-~~~~~~~~~~~~~~~~~-~~ 424 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRR-RKAVVIKECVDMYVPNP-LK 424 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHcCCc-hh
Confidence 888899999999999887543 4556666666777789999999999997765 3311 12333444455666544 56
Q ss_pred HHHHHHHH
Q 038190 214 KVRVLFLD 221 (531)
Q Consensus 214 ~a~~~~~~ 221 (531)
.|+.+|-+
T Consensus 425 ~~~~~~~~ 432 (458)
T PRK11906 425 NNIKLYYK 432 (458)
T ss_pred hhHHHHhh
Confidence 66666644
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.84 Score=41.34 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc--cC----CcchHHHHHHHHHHCCCC---CChhhHHHHHHHHHhcCC-
Q 038190 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCK--MI----GVSDAFVALGRILRKVFS---PDVVTLGCLIRGLCMQGK- 172 (531)
Q Consensus 103 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~- 172 (531)
+++.+.+++.|.+.|+.-+.++|-+..-.... .. ....+..+|+.|++..+- ++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55678899999999999888777664444333 22 356788999999987543 233455545433 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc-CC--hhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 173 ---FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-GF--VNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 173 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
.+.+..+|+.+...|...+ |..-+.+-+-++... .. ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg---n~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG---NDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC---cHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3567788888888787765 443333333333332 22 4478889999999999988877765543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.5 Score=37.92 Aligned_cols=72 Identities=17% Similarity=0.054 Sum_probs=42.1
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPD---FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.-.+.|++++|.+.|+.+...- +-+ ..+.-.++-++-+.++++.|....++.++.-+......|-..|.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3446677777777777776542 222 33444455556677777777777777766544434445555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=37.76 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 237 (531)
..|+.-+ .-.+.|++++|.+.|+.+... .|...-...+.-.++.++-+.++++.|...+++....-..-...-|..-
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3444333 344678888888888888765 3433334556666777788888888888888877654222222334444
Q ss_pred HHHHHhcCChhhhhcchH---HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 238 IRVYCCAVNWEDAKGNTS---AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
|.+++..-..+...+... +|..-|+.++..- |+. .=...|..-+..+... =.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--------PnS-------------~Ya~dA~~~i~~~~d~----LA 167 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--------PNS-------------RYAPDAKARIVKLNDA----LA 167 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--------CCC-------------cchhhHHHHHHHHHHH----HH
Confidence 555544333333333222 2333333333322 221 1111222221111110 00
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD---TSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.-=..+.+.|.+.|.+..|..-++.|.+. ..-+ ....-.+..+|...|-.++|...-.-+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 00023345678888888888888888776 2212 2344556677888888777766655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.24 Score=47.66 Aligned_cols=152 Identities=10% Similarity=0.022 Sum_probs=71.3
Q ss_pred ccCCHHHHHHHHH--HHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSE--RLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
-+++++.+..+.+ ++. ..+ +..-.+.++..+-+.|..+.|+++-. |. ..-.....++|+++.|
T Consensus 273 ~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHH
Confidence 4456666555554 111 111 13345666666666666666655432 21 1234445566666666
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 256 (531)
.++.++. .+...|..|.....+.|+++-|.+.|.+... |..++-.|...|+.+.-.+
T Consensus 338 ~~~a~~~----------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k---- 394 (443)
T PF04053_consen 338 LEIAKEL----------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK---- 394 (443)
T ss_dssp HHHCCCC----------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH----
T ss_pred HHHHHhc----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH----
Confidence 6654333 1455666777777777777777666666543 3444445555555544333
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 257 ALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+.+.....+ -++....++.-.|+.+++.+++.
T Consensus 395 ---l~~~a~~~~------------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 ---LAKIAEERG------------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHTT-------------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHcc------------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333333 13444444455566665555553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.2 Score=38.75 Aligned_cols=174 Identities=13% Similarity=0.040 Sum_probs=93.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSR-GIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC-----IPDTS 350 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-----~p~~~ 350 (531)
..|..+.+++.+.-++.+++.+-+.-... |..| .-....++..++...+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555666666666666666665554432 2222 112334455666677778888888877654311 12235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMIS----MGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAW 426 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 426 (531)
++-.|...|.+..++++|.-+..+..+ -++... ..+-.....-.+.-++...|..-.|.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~-----------------~~kyr~~~lyhmaValR~~G~LgdA~ 226 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW-----------------SLKYRAMSLYHMAVALRLLGRLGDAM 226 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch-----------------hHHHHHHHHHHHHHHHHHhcccccHH
Confidence 677777888888888887766554432 111110 00001112223445566666666666
Q ss_pred HHHHHhhh----CCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 427 ELFKKLPR----YGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 427 ~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..++..+ .|-++. ......+.+.|...|+.+.|..-|++....
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 66665543 232211 233345666677777777776666655443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.7 Score=37.15 Aligned_cols=212 Identities=13% Similarity=0.019 Sum_probs=97.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..-..+|-..+++++|...+.+..+- ..-+...|+ .. ..++.|.-+..++.+. +--+..|+-....|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444455666777777777766665431 122222221 11 2234444444444432 1123355556667777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
+|.++.|-..+++.-.. ..++.|+ ...|.--+......++...|.+++... -..+.+..++
T Consensus 104 ~GspdtAAmaleKAak~--lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~---------------sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA--LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC---------------SRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh---------------hhHhhhhHHh
Confidence 77777776666665432 1111112 112333333333333333443333332 2233333333
Q ss_pred hhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 038190 248 EDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLIDGY 324 (531)
Q Consensus 248 ~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~ 324 (531)
+++-..+.+-..+.......+ .--..|...|-.+.-..++..|...++.--+. .-.-+..+...|+.+|
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~--------~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYN--------SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcc--------cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 333331111111111111111 11123445555566666777777777763332 1223456667777666
Q ss_pred HhcCCHHHHHHHH
Q 038190 325 CLMGRIDDARKLF 337 (531)
Q Consensus 325 ~~~g~~~~a~~~~ 337 (531)
- .|+.+.+.+++
T Consensus 239 d-~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 D-EGDIEEIKKVL 250 (308)
T ss_pred c-cCCHHHHHHHH
Confidence 4 46666666554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.45 Score=41.45 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 351 SYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 351 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
.|+.-+.. .+.|++..|...|...++..... .-....+-.|..++...|++++|..+|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s--------------------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~ 202 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNS--------------------TYTPNAYYWLGESLYAQGDYEDAAYIFA 202 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC--------------------cccchhHHHHHHHHHhcccchHHHHHHH
Confidence 46655554 45677999999998888754221 1244567779999999999999999999
Q ss_pred HhhhC-CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 431 KLPRY-GPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 431 ~~~~~-g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+.+. +-.|. +..+--|..+..+.|+.++|...|+++.+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99863 22232 467778888899999999999888887765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.4 Score=44.11 Aligned_cols=124 Identities=17% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhC-----CCCC---------CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhH
Q 038190 95 GALAGKKYYVNFICLSERLNTI-----GLLP---------DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTL 160 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~-----g~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 160 (531)
..|.+.|++..|...|++.+.. +..+ -..++..|.-++.+.+++..|+..-+.++..+. .|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHH
Confidence 4677888888888888875432 1111 123466677777788888888888888887753 366666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH-HHHHHHHHhh
Q 038190 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK-VRVLFLDMKG 224 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~ 224 (531)
---..+|...|+++.|...|.++.+. .|+ |-.+-+.|+...-+.....+ ..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~---Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPS---NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677888888888888888888875 443 55555555554444443333 3566666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.78 Score=35.84 Aligned_cols=78 Identities=21% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
.....+.|++++|.+.|+.+..+- +. ...+--.|+.+|.+.++++.|...+++.++..+......|-..+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344557788888888888887652 22 23355667778888888888888888888876655556666666666554
Q ss_pred CC
Q 038190 171 GK 172 (531)
Q Consensus 171 g~ 172 (531)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 43
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=3 Score=39.70 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=100.3
Q ss_pred hhH--HHHHHHHHcc-----CCHHHHHHHHHHHHhC-CCCCC-HhhHHHHHHHHHcc---------CCcchHHHHHHHHH
Q 038190 88 PSF--NSLLGALAGK-----KYYVNFICLSERLNTI-GLLPD-FVSLNILMNCFCKM---------IGVSDAFVALGRIL 149 (531)
Q Consensus 88 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~a~~~~~~~~ 149 (531)
..| ...+++.... -+.+.|+.+|.+.... .+.|+ ...|..+..++... .+..+|...-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 677 7777766542 2467889999999822 12343 44555555444322 23456677777888
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CC
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IY 228 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~ 228 (531)
+.+.. |..+...+..++.-.++++.|..+|++.... .|+ ...+|....-.+.-.|+.++|.+.+++..+.. ..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn---~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STD---IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 87644 7888888888888889999999999999887 553 45666666667778899999999999966542 12
Q ss_pred CCHhhHHHHHHHHHhc
Q 038190 229 PDAFVYNSLIRVYCCA 244 (531)
Q Consensus 229 p~~~~~~~li~~~~~~ 244 (531)
.-.......++.|+..
T Consensus 406 ~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 406 RKAVVIKECVDMYVPN 421 (458)
T ss_pred hHHHHHHHHHHHHcCC
Confidence 1223333444455543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.4 Score=33.58 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=84.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh---HHHHHHHHHh
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV---YNSLIRVYCC 243 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~ 243 (531)
+.-.|..++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. .|... ...++.+|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss-------ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS-------NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAK 81 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS--------HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCcC-------CccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHH
Confidence 344688888888888887641 4556666766666666666666666665442 23222 2334444443
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.+. +...+...+..+...|+-+.-.+++..+.+. -.+++.....+..+
T Consensus 82 ~n~-------------------------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~A 129 (161)
T PF09205_consen 82 RNK-------------------------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANA 129 (161)
T ss_dssp TT----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHH
T ss_pred hcc-------------------------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHH
Confidence 332 2334555677788888888888888888763 36678888888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC
Q 038190 324 YCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
|.+.|+..++.+++.+.-+.|++
T Consensus 130 y~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 130 YKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHhcchhhHHHHHHHHHHhchH
Confidence 99999999999999888887754
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.6 Score=41.35 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+. .+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~------------~~e 219 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT------------LAE 219 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH------------hhh
Confidence 3578889999999999999999999999853 347889999999999999999999999887653 345
Q ss_pred HcCCCCCHHHHHHHHHHHh
Q 038190 486 KRYVKPDEITVSILEELLN 504 (531)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~ 504 (531)
+.|+.|...+...+.....
T Consensus 220 dlgi~P~~~~~~~y~~~~~ 238 (280)
T COG3629 220 ELGIDPAPELRALYEEILR 238 (280)
T ss_pred hcCCCccHHHHHHHHHHhc
Confidence 6788888887777766643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=6.1 Score=40.31 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
.+.++.+.+...+. ++..|..++..+++.+.++...++..+.+
T Consensus 721 ~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 721 PETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred hHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 34444444443333 67788888888888886666555544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.16 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++..+...|.+.|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.52 Score=45.38 Aligned_cols=132 Identities=18% Similarity=0.119 Sum_probs=86.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
.-.+.++..+.+.|-.+.|+.+...-. .-.....+.|+++.|.++.+++ .+...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 346777777888888888887754322 1244566788888887765433 3677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.|+++-|.+.|++.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 358 L~~g~~~lAe~c~~k~~-------------------------------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAK-------------------------------DFSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHTTBHHHHHHHHHHCT--------------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHcCCHHHHHHHHHhhc-------------------------------CccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 88888888888887643 35667777788888777777776666543
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPD 466 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (531)
-++....++.-.|+.++.++++.+
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 245555566667777777666644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.82 Score=34.72 Aligned_cols=91 Identities=12% Similarity=-0.068 Sum_probs=61.9
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHH---HHHHHHhcCC
Q 038190 96 ALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGC---LIRGLCMQGK 172 (531)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~ 172 (531)
+++..|+++.|++.|.+.+..- +-....||.-..++.-.|+.++|++-+++.++..-..+...+.+ -...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5667788888888888877653 45677788888888888888888888887776532223333322 2334556677
Q ss_pred hHHHHHHHHHHHHcC
Q 038190 173 FTEASGLFTKFVAFD 187 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~ 187 (531)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.04 E-value=8 Score=39.50 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=36.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-------cchHHHHHHHHHHCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-------VSDAFVALGRILRKV 152 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~ 152 (531)
.| .+|-.|.+.|++++|.++....... .......+...+..|....+ -+....-|++..+..
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 44 3466778999999999888554433 34455667777777766432 224445556555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.91 Score=39.62 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=66.3
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSP--DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
.|+..+..+ +.|++..|...|...++..+.- ....+--|..++...|+++.|..+|..+.+. .|....-..++--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCCCChHHHHH
Confidence 466555544 4567888888888877764331 1223334677788888888888888887775 3333334456667
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
|.....+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777888888888888887765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.9 Score=33.75 Aligned_cols=129 Identities=10% Similarity=0.046 Sum_probs=74.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
.+.+..++|+.-|..+.+.|...- .+..--.........|+...|...|+++-...-.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Y---------------------pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSY---------------------PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcc---------------------hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 456777888888888777654320 11122223444567888889999998887643333
Q ss_pred cHH-HHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 440 NVV-TYTVMI--CGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 440 ~~~-~~~~l~--~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
-.. -...|= ..+..+|.+++.....+.+.. .+-+--...-..|.-+-.+.|++.+|..+|
T Consensus 128 ~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~-----------------d~n~mR~sArEALglAa~kagd~a~A~~~F 190 (221)
T COG4649 128 QIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAG-----------------DGNPMRHSAREALGLAAYKAGDFAKAKSWF 190 (221)
T ss_pred chhhHHHHHHHHHHHhccccHHHHHHHhhhccC-----------------CCChhHHHHHHHHhHHHHhccchHHHHHHH
Confidence 322 111121 234567777766544433221 122222344566777778888888888888
Q ss_pred HHhhhcchhh
Q 038190 517 PSFLSRNQEE 526 (531)
Q Consensus 517 ~~~~~~~~~~ 526 (531)
+.+......|
T Consensus 191 ~qia~Da~ap 200 (221)
T COG4649 191 VQIANDAQAP 200 (221)
T ss_pred HHHHccccCc
Confidence 8877755444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=3.4 Score=37.22 Aligned_cols=152 Identities=13% Similarity=0.016 Sum_probs=80.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---GIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~ 245 (531)
..|++.+|-..++++... .| .|..+++-.-.+|.-.|+.+.-...++++... +++-.+..-....-++...|
T Consensus 115 ~~g~~h~a~~~wdklL~d--~P---tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YP---TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh--Cc---hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 456666666666776654 33 26666666667777777777777777666543 22211222222333444556
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---GIIPDVVVYSSLID 322 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~ 322 (531)
-+++|++..++|++ . .+.|.-+-.+....+...|+..++.+...+-... +--.-...|-...-
T Consensus 190 ~y~dAEk~A~ralq-------i-------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al 255 (491)
T KOG2610|consen 190 IYDDAEKQADRALQ-------I-------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL 255 (491)
T ss_pred cchhHHHHHHhhcc-------C-------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH
Confidence 66666663333333 2 2345555666666666777777776655443221 00001122333333
Q ss_pred HHHhcCCHHHHHHHHHH
Q 038190 323 GYCLMGRIDDARKLFVS 339 (531)
Q Consensus 323 ~~~~~g~~~~a~~~~~~ 339 (531)
.+...+.++.|.++|+.
T Consensus 256 ~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 256 FHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhhcccchhHHHHHHHH
Confidence 45556777777777765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.18 Score=30.33 Aligned_cols=28 Identities=14% Similarity=-0.064 Sum_probs=15.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI 116 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 116 (531)
+|..+..+|.+.|++++|.++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555556666666666655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.79 E-value=4.2 Score=38.95 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSL 237 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 237 (531)
+-..+..++-+.|+.++|++.|.+|.+.. |. .....+...|+.++...+.+.++..++.+..+...+. -...|+..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~--p~-~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF--PN-LDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc-cchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 33456677778899999999999998752 21 1145578889999999999999999999876532221 23445544
Q ss_pred H
Q 038190 238 I 238 (531)
Q Consensus 238 i 238 (531)
+
T Consensus 338 L 338 (539)
T PF04184_consen 338 L 338 (539)
T ss_pred H
Confidence 3
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.64 E-value=5.3 Score=36.10 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=98.5
Q ss_pred CcCCHHHHHHHHHHHHHcC--CCCCh------hhHHHHHHHHHccCCHHHHHHHHHHHHhC--------CCCCCH-----
Q 038190 64 GEVELNDALCFFNYMIHMQ--PTPFM------PSFNSLLGALAGKKYYVNFICLSERLNTI--------GLLPDF----- 122 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------g~~~~~----- 122 (531)
.+|+++.|..++.++.... ..|+. ..||.-...+.+..+++.|...+++..+. ...++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4679999999999987643 22322 13444444444433888887777766433 122332
Q ss_pred hhHHHHHHHHHccCCcc---hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhH
Q 038190 123 VSLNILMNCFCKMIGVS---DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICY 199 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 199 (531)
.++..++.+|...+..+ .|..+++.+.+.... ...++..-+..+.+.++.+.+.+.+.+|+..-.. ....+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-----~e~~~ 158 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-----SESNF 158 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-----ccchH
Confidence 35667777887777654 455666666554332 3556656677777789999999999999975221 22345
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHhhCCCCCCHh
Q 038190 200 ASIIDGL---CKDGFVNKVRVLFLDMKGRGIYPDAF 232 (531)
Q Consensus 200 ~~l~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~ 232 (531)
...+..+ ... ....|...++.+....+.|...
T Consensus 159 ~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 159 DSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 5555444 333 3455666666666554555543
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.56 E-value=6.7 Score=36.99 Aligned_cols=95 Identities=21% Similarity=0.426 Sum_probs=66.6
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY-NTLIN 357 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~-~~li~ 357 (531)
.+|+..++.-.+....+.|..+|-+..+.| +.+++..++++|..++ .|+...|..+|+--... .||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777777777888888888888877 6677788888888666 47777888888764433 2444444 34555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038190 358 SYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~ 377 (531)
.+...++-+.|..+|+..++
T Consensus 475 fLi~inde~naraLFetsv~ 494 (660)
T COG5107 475 FLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH
Confidence 66677888888888875543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.42 E-value=3.6 Score=33.43 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=64.7
Q ss_pred HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 217 VLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 217 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
++++.+.+.++.|+...+..++..+.+.|.+. .+..+...+ +-+|.......+-.+.. ...
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~-----------~L~qllq~~------Vi~DSk~lA~~LLs~~~--~~~ 75 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS-----------QLHQLLQYH------VIPDSKPLACQLLSLGN--QYP 75 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-----------HHHHHHhhc------ccCCcHHHHHHHHHhHc--cCh
Confidence 34455555666777777777777777666544 333344433 33443333333322222 122
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 297 KAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.+.++--+|.+. =...+..++..+...|++-+|.++.+..... +......++++-.+.++...-..+|+-..
T Consensus 76 ~~~Ql~lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 76 PAYQLGLDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222223222 0012445556666677777777766554322 22223445566556666555445554444
Q ss_pred h
Q 038190 377 S 377 (531)
Q Consensus 377 ~ 377 (531)
+
T Consensus 148 ~ 148 (167)
T PF07035_consen 148 E 148 (167)
T ss_pred H
Confidence 3
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.93 Score=40.19 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCCCCcHHhHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA-FDCRPNVIPNVICYAS 201 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~ 201 (531)
.++..++..+...|+++.+...++.+....+. +...|..++.+|.+.|+...|+..|+++.. .....++.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35566666666677777777777777666433 556677777777777777777777766655 2234444456666655
Q ss_pred HHHHHH
Q 038190 202 IIDGLC 207 (531)
Q Consensus 202 l~~~~~ 207 (531)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 555533
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.17 E-value=8.4 Score=37.00 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCI-PDTSSYNTLINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 375 (531)
..++-+.|+.++|.+.|++|.+.... -.......|++++...+.+.++..++.+.
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344455555555555555443211 12223444555555555555555555544
|
The molecular function of this protein is uncertain. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.11 Score=29.10 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=21.3
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCCHHHHH
Q 038190 75 FNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFI 107 (531)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 107 (531)
|++.++..|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555 6677777777777777777764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.05 E-value=15 Score=39.42 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=15.5
Q ss_pred HHHHHHHHhccCChhHHHhhHHH
Q 038190 496 VSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
...|+.++.+.|..+.|.++=+.
T Consensus 1187 ~~~Ll~~l~~~g~~eqa~~Lq~~ 1209 (1265)
T KOG1920|consen 1187 LKRLLEVLVTFGMDEQARALQKA 1209 (1265)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 44677777777877777665444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.03 E-value=1.2 Score=36.80 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
.+..+...|++.|+.+.|++.|.++......++ .-...+-.+|+.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666667777777777777766665433322 2233555666666666777766666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=8.9 Score=36.87 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
..|.....+++..+.......-.+.+..+|...| -+...|..++.+|... ..++-..+|+++.+..+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--------- 130 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--------- 130 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch---------
Confidence 3456666777777777777777777777777765 2566777777877777 556677777777765432
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 391 AELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|+..-..|+.-|-+ ++.+.+..+|.++..
T Consensus 131 --------------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 131 --------------DVVIGRELADKYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred --------------hHHHHHHHHHHHHH-hchhhHHHHHHHHHH
Confidence 33344444444444 555566666655554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.79 E-value=4.5 Score=32.86 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 72 LCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
.+.+..+.+.++.|+...|..++..+.+.|++.... .+++.++-+|.......+-.+.. ....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 334455556677788888888888888888865544 44455556666555544433332 233344444444332
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 152 VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 152 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
=...+..+++.+...|++-+|+++....... +...-..++.+..+.+|...-..+|+-..++
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~--------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV--------DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0114456777888888888888887765321 2233455677777777766666666665553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.32 Score=27.66 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3667778888888888888877764
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.23 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+|..|...|.+.|++++|..+|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478899999999999999999999653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.52 E-value=12 Score=36.91 Aligned_cols=174 Identities=14% Similarity=0.060 Sum_probs=109.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHc----cCCcchHHHHHHHHHHCCCCCChhh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDF------VSLNILMNCFCK----MIGVSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
...++....-.||-+.+++++.+..+.+---.+ -+|+.++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555666778999999998887654311111 234444444443 34677899999999887 456655
Q ss_pred HHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 038190 160 LGC-LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238 (531)
Q Consensus 160 ~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 238 (531)
|.. -.+.+...|++++|++.|++.......-. .-....+-.+.-.+.-..+|++|.+.|..+.+..-- +..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWK-QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 553 34677788999999999997653110100 013345556667788899999999999999875322 233333333
Q ss_pred H-HHHhcCChhhhhcchHHHHHHHHHHHhC
Q 038190 239 R-VYCCAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 239 ~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
. ++...++.+.+....++|.++|.++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 2 3445566645555556666677776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.47 E-value=3.9 Score=31.36 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+...++.+...|+-+.-.+++..+.+. -.+++...-.+..+|.+.|+..++-+++.+.-
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 44555566666677777766776666542 25566666677777777777776665555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=6.9 Score=34.14 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=126.2
Q ss_pred CCCCCChhhHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC---C
Q 038190 151 KVFSPDVVTLGCLIRG-LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR---G 226 (531)
Q Consensus 151 ~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---g 226 (531)
.+-+||+..-|..-.. -.+..++++|+.-|+++.+.....+ ...-.+..-++..+.+.+++++....|.+|... .
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKg-eWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKG-EWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3345665544433221 1223467888888888776532221 012234455677788888888888877776531 1
Q ss_pred --CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 227 --IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 227 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
-.-+..+.|++++-.+...+.+--...|+..++.++...... .-..|-+-+...|...+.+....+++++
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--------LWFKTNtKLgkl~fd~~e~~kl~KIlkq 170 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--------LWFKTNTKLGKLYFDRGEYTKLQKILKQ 170 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--------eeeeccchHhhhheeHHHHHHHHHHHHH
Confidence 112445567777666655555555555666555655554433 2333455677888888888888888888
Q ss_pred HHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH-----HhcCCHHH
Q 038190 305 MKSRGIIP-----------DVVVYSSLIDGYCLMGRIDDARKLFVSIESEG-CIPDTSSYNTLINSY-----SKIEKVEE 367 (531)
Q Consensus 305 ~~~~~~~~-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~p~~~~~~~li~~~-----~~~~~~~~ 367 (531)
+....-.. =...|..-|++|....+-.+...++++.+... --|.+... .+|+-| .+.|++++
T Consensus 171 Lh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~ 249 (440)
T KOG1464|consen 171 LHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEK 249 (440)
T ss_pred HHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHH
Confidence 76542111 13467777888888888888888888765432 22444333 334433 46678887
Q ss_pred HHHHHHHH
Q 038190 368 ALSLYGEM 375 (531)
Q Consensus 368 a~~~~~~~ 375 (531)
|-.-|-+.
T Consensus 250 AhTDFFEA 257 (440)
T KOG1464|consen 250 AHTDFFEA 257 (440)
T ss_pred HHhHHHHH
Confidence 76444333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=5.1 Score=32.42 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh-hHHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF-VYNS 236 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ 236 (531)
..|..-+. +++.+..++|+.-|..+...|...- .+-..--+.......|+...|...|+++-...-.|... -...
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y---pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY---PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34444433 4556677777777777776543320 11112222334556677777777777776543333322 1111
Q ss_pred HHH--HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 237 LIR--VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 237 li~--~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
+=. .+...|.+++... ..+.+...+ .+-....-..|.-+-.+.|++..|...|.++...
T Consensus 136 lraa~lLvD~gsy~dV~s-------rvepLa~d~------n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSS-------RVEPLAGDG------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHH-------HhhhccCCC------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111 2233444443333 333333222 1222233344444555666666666666665543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.08 E-value=5 Score=32.17 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTP-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
++.+++..++.-+.-..|.. ...++.. ..+.+.|+|.+|+.+|+.+.+.+ |.......|+..|....+ +..++.
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~-D~~Wr~ 98 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG-DPSWRR 98 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC-ChHHHH
Confidence 37888888888887754441 2223332 33567788888888888876553 333333344443333222 222332
Q ss_pred -HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 145 -LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
-+++...+..|+. ..+++.+....+...|.
T Consensus 99 ~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 99 YADEVLESGADPDA---RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHhcCCChHH---HHHHHHHHHhccccchh
Confidence 3445555433333 23444444444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.08 E-value=7.2 Score=33.57 Aligned_cols=211 Identities=13% Similarity=0.014 Sum_probs=105.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 197 ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
..|.-...+|....++++|...+.+..+ +|-.+..+=.|-+.+++|.-+.+++....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~---------------~yEnnrslfhAAKayEqaamLake~~kls-------- 88 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASK---------------GYENNRSLFHAAKAYEQAAMLAKELSKLS-------- 88 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH---------------HHHhcccHHHHHHHHHHHHHHHHHHHHhH--------
Confidence 3444455566666777777766655542 22222222233344444444555554432
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC--CCHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE---GCI--PDTSS 351 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---g~~--p~~~~ 351 (531)
--+..|+-....|...|..+-|-..+++.-+. ...-++++|.++|++.... +-. --...
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el 152 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFEL 152 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 11334555556666666666655555543321 1233444455544443211 100 01122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKK 431 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (531)
+...-+.+.+..++++|-..+.+-... ....... ..-...|.+.|-.|....++..|.+.++.
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~---------------~~~~~~y--~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVA---------------ADKCDAY--NSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhH---------------HHHHhhc--ccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333444555666666655444332110 0000000 00124566777778888899999999988
Q ss_pred hhhCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 432 LPRYG---PEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 432 ~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
-.+.+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 216 ~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 216 CSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 54421 123566777888777 567777766554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.07 E-value=13 Score=36.54 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 392 (531)
+..+|..-+..-.+.|+.+.+.-+|++..-. +..-...|--.+.-....|+.+-|..++....+--++.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~---------- 364 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKK---------- 364 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC----------
Confidence 3456666677777778888887777776531 01112233333333344466666665555443321111
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHHHHH---HHHHHH
Q 038190 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEKAYD---LLPDME 468 (531)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~ 468 (531)
.|....+.+. ..-..|+++.|..+++.+.+. . |+.. .-..-+....+.|+.+.+.. ++....
T Consensus 365 ----------~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 365 ----------TPIIHLLEAR--FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred ----------CcHHHHHHHH--HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 1222222222 233456777777777777654 2 3322 11222334445566665552 222111
Q ss_pred HH--------------------H-hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 038190 469 EK--------------------I-RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDE 507 (531)
Q Consensus 469 ~~--------------------i-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 507 (531)
.. | ++.+.|..++.++.+.- +++...|..+++.....+
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 11 1 56677777777777543 456666777766665554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.02 E-value=16 Score=37.46 Aligned_cols=295 Identities=13% Similarity=0.082 Sum_probs=160.5
Q ss_pred hhhhcccCCCCCcCCHHHHHHHHHHHHHcCCCCChh-----hHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHh
Q 038190 53 LLKYLSENSKSGEVELNDALCFFNYMIHMQPTPFMP-----SFNSLLGALAGKKYYVNFICLSERLNTIGLL----PDFV 123 (531)
Q Consensus 53 l~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~ 123 (531)
+-.+|-.... +++.|...+++......+++.. +...++..+.+.+... |....++.++.--. +-..
T Consensus 65 la~iL~~eT~----n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 65 LASILLEETE----NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHcC----CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4455554432 8999999999876644333322 2234455566665555 88888887654211 2223
Q ss_pred hHHHH-HHHHHccCCcchHHHHHHHHHHCC---CCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCC------CCC
Q 038190 124 SLNIL-MNCFCKMIGVSDAFVALGRILRKV---FSPDVVTLGCLIRGLCM--QGKFTEASGLFTKFVAFDC------RPN 191 (531)
Q Consensus 124 ~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~------~~~ 191 (531)
.|..+ +..+...+++..|.+.++.+...- ..+...++-.++.+... .+..+++++.++++..... .+
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~- 218 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV- 218 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC-
Confidence 33333 223333479999999998876642 23445555555555443 4556777777776633221 12
Q ss_pred CCCcHHhHHHHHHHHH--hcCChhHHHHHHHHHhh-------CC----------CC-------------CCHhhH-----
Q 038190 192 VIPNVICYASIIDGLC--KDGFVNKVRVLFLDMKG-------RG----------IY-------------PDAFVY----- 234 (531)
Q Consensus 192 ~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~-------~g----------~~-------------p~~~~~----- 234 (531)
..|...+|..+++.++ ..|+++.+...++++.+ .. ++ +....|
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~ 298 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEE 298 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHH
Confidence 2356677888877665 45776677666555432 11 00 111111
Q ss_pred ----HHHHH--HHHhcCChhhhhcchHHHHHHHHHHH-hCCCCCCccc--cCCHhhHHHHHH---------HHhcCCCHH
Q 038190 235 ----NSLIR--VYCCAVNWEDAKGNTSAALELHEEFV-NGNGELGVIC--HPDVLSYCSIIN---------SLCKDVLVD 296 (531)
Q Consensus 235 ----~~li~--~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ll~---------~~~~~~~~~ 296 (531)
.-++. ..+..+..+.+.+.++++++..+... ......+..+ ..+...|...+. ..+-.+++.
T Consensus 299 l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~ 378 (608)
T PF10345_consen 299 LYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWS 378 (608)
T ss_pred HHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 11122 23344555689999999999999988 2221100000 001111222222 223478899
Q ss_pred HHHHHHHHHHhCCC-CC-----CHHHHHHHHH--HHHhcCCHHHHHHHHH--------HHHhcCCCCCHHHHH
Q 038190 297 KAKELFLDMKSRGI-IP-----DVVVYSSLID--GYCLMGRIDDARKLFV--------SIESEGCIPDTSSYN 353 (531)
Q Consensus 297 ~a~~~~~~~~~~~~-~~-----~~~~~~~ll~--~~~~~g~~~~a~~~~~--------~~~~~g~~p~~~~~~ 353 (531)
.|...++.+.+... .| ....+...+. .+...|+.+.|...|. .....+...+..++.
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 99999998876421 11 1222233332 2445799999999997 444555544444443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.46 E-value=2.8 Score=34.71 Aligned_cols=97 Identities=10% Similarity=-0.076 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC---CChhhHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFS---PDVVTLGC 162 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~ 162 (531)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+...-.+++..+...+.++...--. ++....-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35677777888888888888888888776544433 35667777777778888877777666543111 11111111
Q ss_pred HHH--HHHhcCChHHHHHHHHHHH
Q 038190 163 LIR--GLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 163 li~--~~~~~g~~~~a~~~~~~~~ 184 (531)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1233567777766665553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.05 E-value=20 Score=36.76 Aligned_cols=383 Identities=11% Similarity=-0.028 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH---ccCCcchHHHHHHHHHHCCCCCChhhHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC---KMIGVSDAFVALGRILRKVFSPDVVTLGC 162 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (531)
+...++.||..+-+.|++++...--..|.+.- +.++..|..-+.... ..++...+..+|++.+..- -++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHHHH
Confidence 66778889999999999988877777776653 556666665555433 4467777788888776553 24444444
Q ss_pred HHHHHH-------hcCChHHHHHHHHHHHHc-CCCCCCCCcHHhHHHH---HHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 038190 163 LIRGLC-------MQGKFTEASGLFTKFVAF-DCRPNVIPNVICYASI---IDGLCKDGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 163 li~~~~-------~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
.+..+. ..++++....+|++.... |..- ......|... -..|..+-..++...+|..-...+ .|.
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~--t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~ 264 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHI--TEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDE 264 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhh--cccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chh
Confidence 443332 346778888888887753 1111 0122333333 334455555567777777666554 344
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHH-------HHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALE-------LHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.+-+.-+....+...++.....++.+.. .|+...... .+-...|-.++.-+...|+.-....++++
T Consensus 265 ~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~-------~~~~q~~~~yidfe~~~G~p~ri~l~~eR 337 (881)
T KOG0128|consen 265 DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKE-------PIKDQEWMSYIDFEKKSGDPVRIQLIEER 337 (881)
T ss_pred hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4433333333333333333333333333 333333322 23345577777888888887666666665
Q ss_pred HHhCCCCCCHHHH---HHHH-----------HHHH-hcCCHHHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 038190 305 MKSRGIIPDVVVY---SSLI-----------DGYC-LMGRIDDARKLFVS---IESEGCIPDTSSYNTLINSYSKIEKVE 366 (531)
Q Consensus 305 ~~~~~~~~~~~~~---~~ll-----------~~~~-~~g~~~~a~~~~~~---~~~~g~~p~~~~~~~li~~~~~~~~~~ 366 (531)
+..... .+...| ...+ .+|. ..+...-...++++ ....+-.+....+..+-..+... +.
T Consensus 338 ~~~E~~-~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~--~~ 414 (881)
T KOG0128|consen 338 AVAEMV-LDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMT--VE 414 (881)
T ss_pred HHHhcc-ccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHH--HH
Confidence 543311 111111 1111 1111 00111111111111 11222223333332222222110 01
Q ss_pred HHHHHHHHHHhCCCCCC-------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChHHHHHHHHHhhhCCCC
Q 038190 367 EALSLYGEMISMGVRPD-------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL-CKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 367 ~a~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
.+..++......+-..+ ...+..|...|.........+...+.......+ .-.++.+.|+.+|+.....|..
T Consensus 415 l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~ 494 (881)
T KOG0128|consen 415 LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG 494 (881)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc
Confidence 11111111111121111 223344444444433322222222222233333 2468899999999998876543
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
-=...|-..++.-...|+...+..+++......-..+.+..+++.+.
T Consensus 495 ~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~ 541 (881)
T KOG0128|consen 495 SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFR 541 (881)
T ss_pred hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHH
Confidence 22225666666666778888888877776666444444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.52 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.+|..+..+|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566777777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.71 E-value=27 Score=37.58 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCH
Q 038190 288 SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTS--SYNTLINSYSKIEKV 365 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~--~~~~li~~~~~~~~~ 365 (531)
.+...+.+++|.-.|+..-+. ..-+.+|..+|++.+|..+..++... -+.. +-..|+.-+...+++
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 333455555555555433211 22345566666666666666555432 1111 124455566666666
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
-+|-++..+... -..-.+..|+++..+++|..+.....
T Consensus 1016 ~eAa~il~e~~s------------------------------d~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS------------------------------DPEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhHHHHHHHHhc------------------------------CHHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 666666655443 12233445666677777777765554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.32 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=9.1
Q ss_pred cHHhHHHHHHHHHhcCChhHH
Q 038190 195 NVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a 215 (531)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.15 E-value=11 Score=31.98 Aligned_cols=205 Identities=14% Similarity=0.050 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+=+.|.-+|++- . .|.++.---....|+.+++.+. +.-+.+||.|.-.+...|+++.|.+.|+
T Consensus 61 ~eeRA~l~fERG----v-----lYDSlGL~~LAR~DftQaLai~--------P~m~~vfNyLG~Yl~~a~~fdaa~eaFd 123 (297)
T COG4785 61 DEERAQLLFERG----V-----LYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFD 123 (297)
T ss_pred hHHHHHHHHHhc----c-----hhhhhhHHHHHhhhhhhhhhcC--------CCcHHHHHHHHHHHHhcccchHHHHHhh
Confidence 456666666542 2 3444332222234555555442 2235678888888889999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHH-HHHhhC
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF-LDMKGR 225 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~m~~~ 225 (531)
...+..+.-+-...|.-| ++--.|++.-|.+-|...-+.+ |+ .|-...|--+. -..-++.+|..-+ ++..+.
T Consensus 124 s~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D--~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~ 196 (297)
T COG4785 124 SVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDD--PN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS 196 (297)
T ss_pred hHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcC--CC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc
Confidence 998875443333333222 3344688888888777766642 21 02233333222 2334555665443 333333
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 038190 226 GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 226 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
|..-|...|-.+.- |+..+ .. +++.+.....+.......-..||--+..-+...|+.++|..+|+..
T Consensus 197 ----d~e~WG~~iV~~yL-gkiS~-e~-------l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 197 ----DKEQWGWNIVEFYL-GKISE-ET-------LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred ----cHhhhhHHHHHHHH-hhccH-HH-------HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 55556555544432 22111 11 3333332220000000011335555666666777777777777666
Q ss_pred HhC
Q 038190 306 KSR 308 (531)
Q Consensus 306 ~~~ 308 (531)
...
T Consensus 264 ian 266 (297)
T COG4785 264 VAN 266 (297)
T ss_pred HHH
Confidence 554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.10 E-value=5.3 Score=39.12 Aligned_cols=103 Identities=19% Similarity=0.112 Sum_probs=71.0
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 289 LCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEA 368 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a 368 (531)
..+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|.+..+ |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 456788888877765532 567788888888888888888888877654 34566666667776655
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+-....+.| ..|...-+|...|+++++.+++..-.+
T Consensus 712 ~~la~~~~~~g----------------------------~~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 712 AVLASLAKKQG----------------------------KNNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHHHHhhc----------------------------ccchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 55555555444 223344567788999999988866543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.33 Score=38.65 Aligned_cols=84 Identities=17% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34555555666666666666665554445566666666666665556555555411 11222334455555555
Q ss_pred hHHHHHHHHHH
Q 038190 173 FTEASGLFTKF 183 (531)
Q Consensus 173 ~~~a~~~~~~~ 183 (531)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.67 E-value=22 Score=35.03 Aligned_cols=369 Identities=9% Similarity=-0.053 Sum_probs=180.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-ccCCcchHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMP-SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFC-KMIGVSDAFVA 144 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~ 144 (531)
+.+.+..+++.++..- |... -|......=.+.|..+.+.++|++.+. |++.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4466677777776533 3333 455555555677778888888888765 35666666766665444 44677777777
Q ss_pred HHHHHHC-CCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh-----cCChhHHHH
Q 038190 145 LGRILRK-VFS-PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK-----DGFVNKVRV 217 (531)
Q Consensus 145 ~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~ 217 (531)
|+.++.. |.. .+...|...|.--..++++.....+++++++ .|...-+. .|.......-. ....+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile---iP~~~~~~-~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE---IPLHQLNR-HFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh---hhhhHhHH-HHHHHHHHHhcCChhhhcCHHHHHH
Confidence 7777653 221 2455677777766777777777777777765 22211111 11111111110 111122111
Q ss_pred HHHHHh--------------------hCCCCCCHhhH--HHHHHHH-------HhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 218 LFLDMK--------------------GRGIYPDAFVY--NSLIRVY-------CCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 218 ~~~~m~--------------------~~g~~p~~~~~--~~li~~~-------~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+-.... ..+-+-+..+- +.+-..+ -..-...+... .|+.-....
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~-------~fE~~Ikrp 285 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW-------GFEEGIKRP 285 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH-------hhhhhcccc
Confidence 111111 11000010000 0010000 00000011111 111111111
Q ss_pred CCC-CccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 038190 269 GEL-GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI- 346 (531)
Q Consensus 269 ~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~- 346 (531)
... .....++..+|...+.--...|+.+.+.-+|+...-.--. =...|-..+.-....|+.+-|..++....+--.+
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 000 0002334567777777778888888888777766532111 1122333333333447777777777665544322
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHH---HHHHHHHhCCCCCCHHH
Q 038190 347 -PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAA---ELFRTLHNTKFELDLTV 408 (531)
Q Consensus 347 -p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~---~~~~~~~~~~~~~~~~~ 408 (531)
|....+.+.+ +-..|+++.|..+++.+.+.- |+ .+..+.+. .++....+... +..+
T Consensus 365 ~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i 438 (577)
T KOG1258|consen 365 TPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGI 438 (577)
T ss_pred CcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--Ccch
Confidence 2222222222 234578888888888877643 44 33444444 22222222211 2222
Q ss_pred HHHHHHHH-----HcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCH
Q 038190 409 FNCLVDGL-----CKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGI 457 (531)
Q Consensus 409 ~~~l~~~~-----~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 457 (531)
.+.+.--+ .-.++.+.|..++.++.+. .+++...|..++..+...+-.
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcc
Confidence 22222222 2367888999999998875 455677777787777666533
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.64 E-value=5.2 Score=39.17 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=93.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
.-+.++.-+.+.|-.++|+++-. .||. - .....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~-------D~d~-r----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST-------DPDQ-R----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC-------Chhh-h----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45566777777777777766531 2221 1 233457899999988876543 6778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
+.+++..|.+.|.+.. -|..|+-.+...|+-+.-..+-....+.|.
T Consensus 678 ~~~~l~lA~EC~~~a~-------------------------------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~--- 723 (794)
T KOG0276|consen 678 SAGELPLASECFLRAR-------------------------------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK--- 723 (794)
T ss_pred hcccchhHHHHHHhhc-------------------------------chhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence 9999999999887754 366777788888887766666666666543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 441 VVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.|.-.-+|...|+++++++++.+-
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence 233445778899999998888543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=2.9 Score=35.21 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
.+..+..+.+.+++.+++.+.+.-++.. +.|...-..++..++-.|++++|..-++-.-..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3444556666666666666666655554 445556666666666667776666655555443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.2 Score=30.92 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
..+-++.+....+.|.+....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.50 E-value=2.7 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++.+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555544444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.47 E-value=36 Score=35.93 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=20.9
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.|......+.+..+++.+....-.++..-.+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 344555566666666666544334445555555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.38 E-value=1 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777776665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.08 E-value=23 Score=33.21 Aligned_cols=66 Identities=8% Similarity=-0.093 Sum_probs=50.4
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
....+|..++..+.+.|.++.|...+..+...+... ++.....-....-..|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445678899999999999999999999988754211 334444445666778999999999988877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.93 E-value=16 Score=31.30 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=8.8
Q ss_pred CChhHHHhhHHHhhhcch
Q 038190 507 ENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 507 g~~~~a~~~~~~~~~~~~ 524 (531)
++.-.+...+++....++
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 344445555555544443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.92 E-value=1.8 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5688899999999999999988887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.85 E-value=24 Score=33.06 Aligned_cols=169 Identities=11% Similarity=0.018 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC---------CC
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG---------IY 228 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---------~~ 228 (531)
..+.-+...|..+|+++.|++.|-+...- +.. ....+..|-.+|..-.-.|+|..+..+..+....- +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs-~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTS-AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcc-hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 46777889999999999999999985432 111 11245567778888888899998888887776541 12
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH-----HH
Q 038190 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL-----FL 303 (531)
Q Consensus 229 p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-----~~ 303 (531)
+-...+..+... .++.|..|.+.|-.......+...++.|...+.-..+.+++-.++-+.-..+ |+
T Consensus 229 ~kl~C~agLa~L---------~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 229 AKLKCAAGLANL---------LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred cchHHHHHHHHH---------HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 222222222222 2233444443554443333334455666655555556665555443322222 22
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+. .+.....+...| .+++....++++++...
T Consensus 300 ~flel----~Pqlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 300 LFLEL----EPQLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred hHHhc----ChHHHHHHHHHh--hhhHHHHHHHHHHhccc
Confidence 22222 344444444444 37788888888887653
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.84 E-value=17 Score=31.27 Aligned_cols=129 Identities=10% Similarity=0.001 Sum_probs=68.1
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-CCHHHHHHHHHHHHhC--CCCCCHH--
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-VLVDKAKELFLDMKSR--GIIPDVV-- 315 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~--~~~~~~~-- 315 (531)
|.+..++.+|...++.|+++|-.|-.-. .-....-.+...|... .+++.|+..|++.-+- |-..+..
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf~--------~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRFT--------MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHHH--------HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3444566777776777777766654322 1122233444555443 5667777777665442 2122222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHH-H--HHhcCCHHHHHHHHHHHHh
Q 038190 316 -VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT---LIN-S--YSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 316 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~---li~-~--~~~~~~~~~a~~~~~~~~~ 377 (531)
.+.-+...-+..+++.+|+++|+++....+..+..-|.. ++. + +.-..+.-.+...+++..+
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 223333444567899999999999887755444433322 111 1 1222455455555555554
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.49 E-value=40 Score=35.21 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred HhcCCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHH--HH
Q 038190 289 LCKDVLVDKAKELFLDMKSR----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY---NTLIN--SY 359 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~---~~li~--~~ 359 (531)
....|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.....+..-.-+...+ ..+.. .+
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34578889998888776654 23345566677777888889999999888776654222233333 33322 34
Q ss_pred HhcCCHHHH--HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcC-CChHHHHHHHHHhhhC
Q 038190 360 SKIEKVEEA--LSLYGEMISMGVRPDNSCILEAAELFRTLHNTK-FELDLTVFNCLVDGLCKS-WRLRSAWELFKKLPRY 435 (531)
Q Consensus 360 ~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 435 (531)
...|+...+ ...|....... ..+.. ..+-..++..+..++.+. +...+|..-+.-....
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~-----------------l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~ 610 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQH-----------------LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY 610 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-----------------hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc
Confidence 455633222 22222221110 00000 011234556666666651 1222222223222222
Q ss_pred CCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYT--VMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
...|-...+. .|+..+...|+.++|...++++...
T Consensus 611 ~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 611 TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222222222 5677778899999998888776554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 441 VVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
..+++.+...|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3567788888888898888888886543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.29 E-value=18 Score=31.02 Aligned_cols=120 Identities=20% Similarity=0.063 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHccCCcchHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLP-DFVSLNILMNCFCKMIGVSDAFVALGRILRK-VFSPDVVTLGCLIRGLCMQGKFTEAS 177 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 177 (531)
.+.+..+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555443111 2455666666666777777777777666542 22334455555666666667777777
Q ss_pred HHHHHHHHcCCCCCCCCcHHhHHHHHH-HHHhcCChhHHHHHHHHHhh
Q 038190 178 GLFTKFVAFDCRPNVIPNVICYASIID-GLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~ 224 (531)
..+.........+ ......... .+...|+++.+...+.+...
T Consensus 116 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-----DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776542221 122222222 56667777777777776643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.18 E-value=1 Score=26.36 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 233 ~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+++.+...|...|++++|...+++++.+.+.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 44555555555555555555555555554444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=29 Score=33.23 Aligned_cols=118 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQP-TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
.|++..|-+-+...++..+ .|+....-+ ..+...|+++.+...+...... +.....+...+++...+.|+++.|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3466666544333333222 233332222 2344568888887777655432 23345567777888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.-+-|+...++ +..+........-..|-++++.-.|+++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88777776555 3333332222333456677888777777654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.89 E-value=2 Score=29.41 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChhHHHhhH
Q 038190 473 ECLKAIELLHKMAKRYVKPD--EITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 473 ~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.++|+..|.+.++.-..+. ..++.+++.+|+..|++.+++++.
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777765443333 257888999999999999988764
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.73 E-value=15 Score=29.56 Aligned_cols=52 Identities=12% Similarity=-0.116 Sum_probs=27.3
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.+.++.+++..+++.+.-..+. ....-..-...+...|++.+|+.+|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666666666666554322 111112223345566667777777666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.70 E-value=7.6 Score=34.77 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh
Q 038190 83 PTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
...++.+-..++..-....+++.+...+-++.... ..++. +-..+++.|.+ -++++++.++..-++.|+-||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence 33455556666666666677788877777665431 11221 22233333333 366678888877788888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++.+|+.+.+.+++.+|.++...|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888777666643
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.60 E-value=10 Score=27.59 Aligned_cols=61 Identities=7% Similarity=0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 389 EAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
+..+-+..+......|++.+..+.+++|.+.+++..|.++|+-.+.+ +.+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 45556667778888999999999999999999999999999998864 22333367666643
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.6 Score=23.13 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
..|..+..++...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577788899999999999988877654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=86.43 E-value=23 Score=31.39 Aligned_cols=89 Identities=12% Similarity=-0.012 Sum_probs=61.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK-- 361 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-- 361 (531)
.=|.+++..++|.+++...-+.-+.--+....+...-|-.|.+.|.+..+.++-....+.--.-+..-|..+++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347889999999988765544333211223445555566699999999999998887765323344558777777654
Q ss_pred ---cCCHHHHHHHH
Q 038190 362 ---IEKVEEALSLY 372 (531)
Q Consensus 362 ---~~~~~~a~~~~ 372 (531)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 69999998876
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.14 E-value=34 Score=33.17 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=37.4
Q ss_pred HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 388 LEAAELFRTLH-NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 388 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
+..+.+...+. +.|...-...+.-+-.-|....++++|.+++..+.+.. ..|...-..++.-+
T Consensus 186 D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 186 DFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 33444444443 23333345566666678888999999999999887753 22444444444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.66 E-value=13 Score=33.43 Aligned_cols=101 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG---IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
+.+..+...++..-....+++.+..++-+++..- ..++. +-...++.+. .-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3445555566666666778888888887776541 11221 1122333333 45677999998888899999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+.+|+.+.+.+++.+|..+...|+..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998887777653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.40 E-value=25 Score=30.87 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHh---CCCC--CCHhhHHHHHHHHHccC
Q 038190 65 EVELNDALCFFNYMIHMQPTPF---MPSFNSLLGALAGKKYYVNFICLSERLNT---IGLL--PDFVSLNILMNCFCKMI 136 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~--~~~~~~~~li~~~~~~g 136 (531)
...+++|+.-|+..++...... -.+...+|....+.+++++..+.|.+|+. ..+. -+....|.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3489999999999988554322 33556678889999999999999888853 1111 24556778887777666
Q ss_pred CcchHHHHHHHHHHCC-CCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-------CcHHhHHHHHH
Q 038190 137 GVSDAFVALGRILRKV-FSPDVV----TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-------PNVICYASIID 204 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~-~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~ 204 (531)
+.+.....|+.-++.- -.-+.. +-..|...|...|++....++++++...-...+.. .-...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 6666555555433210 001111 33457778888889999889988887543222211 12346777788
Q ss_pred HHHhcCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHH-----HhcCChhhhhcc
Q 038190 205 GLCKDGFVNKVRVLFLDMKGR-GIYPDAFVYNSLIRVY-----CCAVNWEDAKGN 253 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~~~~~~a~~~ 253 (531)
.|....+-.....+|++...- .-.|.+... .+|+-| .+.|.+++|...
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhH
Confidence 898888888888888876532 223344333 233333 345666666553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.30 E-value=12 Score=31.43 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSA 425 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A 425 (531)
+|+..+.+|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3555555555555555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.30 E-value=7.6 Score=27.93 Aligned_cols=45 Identities=13% Similarity=0.055 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 105 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
++.+-++.+....+.|++.+..+.+++|.+.+|+..|..+++-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.27 E-value=17 Score=32.47 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=101.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHc-cC-CcchHHHHHHHHHH-CCCCCChhhHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNT-IGLLPDFVSLNILMNCFCK-MI-GVSDAFVALGRILR-KVFSPDVVTLGCLIR 165 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 165 (531)
|..|+. ++..+.+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 34567889999985432 2355688888888887765 22 23333344444443 234678888889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHH-----HhhCCCCCCHhhHHHHHHH
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD-----MKGRGIYPDAFVYNSLIRV 240 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~ 240 (531)
.++..+++..-.++++....... | ..|...|..+|......|+..-...+.++ ++..|+..+...-..+-..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~-~--~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSV-P--GNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCC-C--CCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99999999999999988876411 1 24888899999999999999999999986 3556777666554444433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.04 E-value=46 Score=33.67 Aligned_cols=147 Identities=7% Similarity=-0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHH--H-HHccCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHccC-
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLG--A-LAGKKYYVNFICLSERLNT-------IGLLPDFVSLNILMNCFCKMI- 136 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~--~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 136 (531)
...|...++.....|.. .......++. + +....|.+.|+..|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 56777788777765532 1111122222 2 3456678888888887766 33 3334555555555532
Q ss_pred ----CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH----
Q 038190 137 ----GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM-QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC---- 207 (531)
Q Consensus 137 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 207 (531)
+.+.|..+|...-+.|.+ +....-..+..... ..+...|.++|......|.. .++-.+...|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-------~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-------LAIYRLALCYELGLG 375 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhCCC
Confidence 445566666666666522 33222222211111 13456677777666655422 12212222111
Q ss_pred hcCChhHHHHHHHHHhhCC
Q 038190 208 KDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~g 226 (531)
-..+...|..++.+..+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1235666666666666665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.74 E-value=51 Score=33.88 Aligned_cols=102 Identities=9% Similarity=0.003 Sum_probs=53.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
+..+.+.+.+++|+++.+..... .+ -.......|..+.-.|+++.|-...-.|... +..-|.--+..++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34555666777777766654422 33 2234556666666667777776666666533 455555555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
++......+ +.. + .| ..+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt-~-~~--rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPT-G-PP--RLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCC-C-Cc--ccCchHHHHHHHHHHH
Confidence 554332221 111 1 11 1244566666666665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.42 E-value=13 Score=31.22 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhh---CCCCCcHHHHHHHHHHHHHcCCHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPR---YGPEPNVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~p~~~~~~~l~~~~~~~g~~~~A 460 (531)
-++...-.|...|. ..+.+++..++.+..+ .+-.+|+..+..|+..+.+.|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 36777777777776 6688999999998876 23367899999999999999999987
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=84.35 E-value=30 Score=30.94 Aligned_cols=137 Identities=15% Similarity=0.054 Sum_probs=81.8
Q ss_pred cCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHH
Q 038190 209 DGFVNKVRVLFLDMKG-RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287 (531)
Q Consensus 209 ~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (531)
+..+.+|+++|+.... ..+--|..+...+++......+. -.. .-.++.+.+...-+ -.++..+...++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~--~l~---alYEvV~~l~~t~~-----~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT--KLN---ALYEVVDFLVSTFS-----KSLTRNVIISILE 210 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc--chh---hHHHHHHHHHhccc-----cCCChhHHHHHHH
Confidence 3345666666663222 22444666677777666552221 111 11123333333211 2466667778888
Q ss_pred HHhcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCCCHHHHHHH
Q 038190 288 SLCKDVLVDKAKELFLDMKSR-GIIPDVVVYSSLIDGYCLMGRIDDARKLFVS-----IESEGCIPDTSSYNTL 355 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~g~~p~~~~~~~l 355 (531)
.++..+++..-.++++..... +..-|...|..+|....+.|+..-..++.++ +.+.|+..+...-..+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888999998888888776655 5566788888888888888888777766654 2344444444443333
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.91 E-value=4.2 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHcCCChHHHHHHHHHhhh
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.90 E-value=36 Score=31.53 Aligned_cols=151 Identities=9% Similarity=-0.048 Sum_probs=93.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHH---ccC---------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchH
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALA---GKK---------YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDA 141 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~---~~~---------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 141 (531)
-|++..+.+|. |+.+|-.++..-- ..+ -.+.-+.++++.++.+ +.+...+...+..+.+..+.+..
T Consensus 7 el~~~v~~~P~-di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPH-DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcc-cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555565565 7888888875422 111 1456678888888875 46677788888888888888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHc------CCCCCCCCcHH-------hHHHHHHH
Q 038190 142 FVALGRILRKVFSPDVVTLGCLIRGLCMQ---GKFTEASGLFTKFVAF------DCRPNVIPNVI-------CYASIIDG 205 (531)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~------~~~~~~~~~~~-------~~~~l~~~ 205 (531)
.+.++.++...+. +...|...+...... -.++....+|.+.... +......+-.. .+.-+...
T Consensus 85 ~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~f 163 (321)
T PF08424_consen 85 AKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRF 163 (321)
T ss_pred HHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999887433 677888877665542 2455666666554321 10000001111 22223334
Q ss_pred HHhcCChhHHHHHHHHHhhCCC
Q 038190 206 LCKDGFVNKVRVLFLDMKGRGI 227 (531)
Q Consensus 206 ~~~~~~~~~a~~~~~~m~~~g~ 227 (531)
+..+|..+.|..+++-+.+.++
T Consensus 164 l~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 164 LRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHCCchHHHHHHHHHHHHHHc
Confidence 4567888888888888877543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.85 E-value=1.3 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.1
Q ss_pred HHHHHHHHHhccCChhHHHhhHHH
Q 038190 495 TVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 495 ~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
....+..++...|+.++|.+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345688999999999999998863
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.71 E-value=20 Score=28.39 Aligned_cols=50 Identities=14% Similarity=-0.034 Sum_probs=23.9
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.++++++..+++.+.-..+. ....-..-...+...|++++|+++|+++..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555555555555544221 111111122334555666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.55 E-value=57 Score=33.53 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTP-FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
.+++|+..-+.....-+.. -...+...|..+...|++++|-...-.|... +..-|..-+..+...++......
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~-- 444 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAP-- 444 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhc--
Confidence 7888887776654321110 3457888899999999999999998888743 56677777777777666554432
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHh
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
-+.......+..+|..++..+..
T Consensus 445 -~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 445 -YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred -cCCCCCcccCchHHHHHHHHHHH
Confidence 22222222455677777766665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.26 E-value=1e+02 Score=36.35 Aligned_cols=301 Identities=10% Similarity=-0.057 Sum_probs=156.4
Q ss_pred HHHHHHHccCCcchHHHHHHHH----HHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 127 ILMNCFCKMIGVSDAFVALGRI----LRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 127 ~li~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
.+..+-.+++.+..|...+++- ++. ......+..+...|+..+++|....+...... . . .....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~------~-sl~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---D------P-SLYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---C------c-cHHHH
Confidence 4445566778888998888873 222 11223444455589999999988887764222 1 1 23344
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
+......|++..|...|+.+.+.+.. ...+++.++......+.+....- ..+...... .+....+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~-------~~dg~~~~~-------se~~~~~ 1520 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEIL-------HLDGLIINR-------SEEVDEL 1520 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHh-------hhcchhhcc-------CHHHHHH
Confidence 55567789999999999999876322 35567766666555555554443 333222221 1222223
Q ss_pred HHH-HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHh--cCCHHHHHHHHHHHHhc--------CCC-CC
Q 038190 283 CSI-INSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL--IDGYCL--MGRIDDARKLFVSIESE--------GCI-PD 348 (531)
Q Consensus 283 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~--~g~~~~a~~~~~~~~~~--------g~~-p~ 348 (531)
+.+ +.+--+.++++.....+. +. +..+|... .....+ ..|.-.-.+..+.+.+. +.. .-
T Consensus 1521 ~s~~~eaaW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy 1593 (2382)
T KOG0890|consen 1521 NSLGVEAAWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSY 1593 (2382)
T ss_pred HHHHHHHHhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchH
Confidence 322 344467777777766654 11 11222222 111111 11211111222222211 000 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------------cccHHHHHHHHHHHHhCCCC-----
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------------NSCILEAAELFRTLHNTKFE----- 403 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------~~~~~~a~~~~~~~~~~~~~----- 403 (531)
...|..++....-...-.... .+ .++.++ -...+-.+.+-+.+......
T Consensus 1594 ~~~Y~~~~kLH~l~el~~~~~----~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~ 1667 (2382)
T KOG0890|consen 1594 VRSYEILMKLHLLLELENSIE----EL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKS 1667 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----Hh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccc
Confidence 123333333322111000000 00 011111 00111112222222222112
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
--..+|-...+....+|.++.|...+-...+.+ -+..+-....-+...|+...|+.++++..+.
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 135678888999999999999998887777754 3345566777788999999999999988865
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.12 E-value=65 Score=33.13 Aligned_cols=58 Identities=16% Similarity=-0.083 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-------HHHHHHHHHHHHhCCCCCCHh
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY-------YVNFICLSERLNTIGLLPDFV 123 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~~~~~ 123 (531)
.|++++|.++.+..... .......+-..+..|....+ -++...-|++..+.....|++
T Consensus 124 ~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 124 CGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred cCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45999999999555443 33345677788888876533 236666777776654333554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.11 E-value=4.8 Score=22.06 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+|..+...|...|++++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666667777777777777776544
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.94 E-value=27 Score=28.70 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=40.9
Q ss_pred CCCCH-hhHHHHHHHHHhc----CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHH
Q 038190 227 IYPDA-FVYNSLIRVYCCA----VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKEL 301 (531)
Q Consensus 227 ~~p~~-~~~~~li~~~~~~----~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 301 (531)
+.|+. .++..+..+|... .+..++...+++|.+.|+...... |+...|+.-+... ++|-++
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~--------P~ne~Y~ksLe~~------~kap~l 129 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED--------PNNELYRKSLEMA------AKAPEL 129 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHH------HTHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHH------HhhHHH
Confidence 34543 4555555555443 344566677888888888877744 7888888777776 345666
Q ss_pred HHHHHhCC
Q 038190 302 FLDMKSRG 309 (531)
Q Consensus 302 ~~~~~~~~ 309 (531)
+.++.+.+
T Consensus 130 h~e~~~~~ 137 (186)
T PF06552_consen 130 HMEIHKQG 137 (186)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHH
Confidence 66666654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.79 E-value=1.9 Score=23.51 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 496 VSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 496 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+-.++.++.+.|++++|.+.++++...-+.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 345778888889999999999888766543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.19 E-value=3.9 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.+|..+...|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678889999999999999999999886
|
... |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.17 E-value=24 Score=31.31 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPN-------VVTYTVMICGLCIEGGIEKAYDLLPDMEEKI------------- 471 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i------------- 471 (531)
+.+-..+.+++++|...+.++...|+..+ ..+...+...|.+.|++..--++.....+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred ----------hhHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHhccCChhHHHhhHHHhhhcchhhhhcc
Q 038190 472 ----------RECLKAIELLHKMAKRYVKPDEITVSI-----LEELLNKDENCHECMNLLPSFLSRNQEESKLT 530 (531)
Q Consensus 472 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 530 (531)
..++.-+.+....++...+-....+.. ++.++.+.|++.+|..++..+..+=..-++.+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.12 E-value=0.54 Score=37.41 Aligned_cols=85 Identities=12% Similarity=0.144 Sum_probs=65.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 363 (531)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356777788889999999999998776678899999999999998888888877621 2233356778888888
Q ss_pred CHHHHHHHHHHH
Q 038190 364 KVEEALSLYGEM 375 (531)
Q Consensus 364 ~~~~a~~~~~~~ 375 (531)
.++.+.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 888888888765
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=34 Score=29.20 Aligned_cols=228 Identities=16% Similarity=0.042 Sum_probs=151.9
Q ss_pred cCCcchHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 135 MIGVSDAFVALGRILRKVFS-PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
.+....+...+......... .....+......+...+++..+...+.........+ .....+......+...+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLP---NLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHHHHhhHH
Confidence 34555566666666555322 135677778888999999999999888877520122 25667778888888889999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIR-VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
.+...+.........+ ......... .+...|+++.+.. .+......... .......+......+...
T Consensus 113 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 113 EALELLEKALALDPDP-DLAEALLALGALYELGDYEEALE-------LYEKALELDPE----LNELAEALLALGALLEAL 180 (291)
T ss_pred HHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcCCC----ccchHHHHHHhhhHHHHh
Confidence 9999999988754433 122222233 6778888888888 55555332200 012233444444556778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
++.+.+...+..............+..+...+...++++.+...+......... ....+..+...+...+..+.+...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 899999999999887632214677788888888899999999999998876322 2344444555555667788888888
Q ss_pred HHHHhC
Q 038190 373 GEMISM 378 (531)
Q Consensus 373 ~~~~~~ 378 (531)
......
T Consensus 260 ~~~~~~ 265 (291)
T COG0457 260 EKALEL 265 (291)
T ss_pred HHHHHh
Confidence 777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.90 E-value=26 Score=27.78 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038190 65 EVELNDALCFFNYMIHMQPT-PFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 117 (531)
.++++++..+++.+.-..|+ +...++... .+...|+|.+|+.+|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34788888888888764444 222333333 3557888888888888887664
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.53 E-value=26 Score=30.13 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVY 241 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 241 (531)
..+..|...-++.-|-...+++.+ ...+-.+++ -|.+..+.+--.++.+-....++.-+..-..+++ +
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiE---------PIQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIE---------PIQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhh---------hHHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Confidence 345556666666555555555553 122222222 2455555554455555555556665555555554 3
Q ss_pred HhcCChhhhhc
Q 038190 242 CCAVNWEDAKG 252 (531)
Q Consensus 242 ~~~~~~~~a~~ 252 (531)
...|+...|+.
T Consensus 203 ta~GDMRQalN 213 (333)
T KOG0991|consen 203 TAQGDMRQALN 213 (333)
T ss_pred hccchHHHHHH
Confidence 44566555555
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.52 E-value=4.5 Score=24.27 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038190 320 LIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555443
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 9e-13
Identities = 12/114 (10%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 277 PDVLSYCSIINSLCKDVLVDKAKELFL---DMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
+ + A L + + + + + +Y++++ G+ G +
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY-GEMISMGVRPDNSC 386
+ ++ G PD SY + + ++ + +M G++
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.4 bits (160), Expect = 1e-11
Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 18/244 (7%)
Query: 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213
S L + + + A L + + + Y +++ G + G
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-QKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273
++ + +K G+ PD Y + ++ E+ +L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG------TIERCLEQMSQEGLKLQA 236
Query: 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333
+ +LS + ++ ++ +P V S L+
Sbjct: 237 LFTAVLLSEE------DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
Query: 334 RKLFVSIESEGCIPDT-----SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCIL 388
KL + +++ C+ + + + S K + + + + +
Sbjct: 291 PKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALC 350
Query: 389 EAAE 392
A
Sbjct: 351 RALR 354
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 26/289 (8%), Positives = 80/289 (27%), Gaps = 19/289 (6%)
Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
+ + + A L +H +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLA----HHLLVVHHGQRQKR------KLLTLDM 167
Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID-DARKLFVSI 340
Y +++ + + + +K G+ PD++ Y++ + + + +
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 341 ESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400
EG L++ + ++ + P + ++L R ++
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP---PVNTSKLLRDVYAK 284
Query: 401 KFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE-PNVVTYTVMICGLCIEGGIEK 459
+ + + L + + EL ++ E P + + V ++ ++
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
Query: 460 AYDLLPDMEEKIRECLKAIELLHKMAK----RYVKPDEITVSILEELLN 504
L + + L+ + + + E+ +L+ L
Sbjct: 345 WEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQA 393
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.3 bits (108), Expect = 2e-05
Identities = 20/252 (7%), Positives = 65/252 (25%), Gaps = 9/252 (3%)
Query: 1 MPSSSPATSRTAFKVKPSSSLRNSKKPISLNSENEPSSLHSNSVSTVEEKTKLLKYLSEN 60
+ + ++ + L+ + +S + + E+ L + L E
Sbjct: 44 LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQ-LARLLQEA 102
Query: 61 SKSGEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY---VNFICLSERLNTIG 117
+++ A Q + + + + +
Sbjct: 103 PGKLSLDVEQA--PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR 160
Query: 118 LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEAS 177
L N +M + + + L + +PD+++ ++ + Q +
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 178 GLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSL 237
+ + + + + A ++ + + V + P + L
Sbjct: 221 ---ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 238 IRVYCCAVNWED 249
+R
Sbjct: 278 LRDVYAKDGRVS 289
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 6e-12
Identities = 92/586 (15%), Positives = 167/586 (28%), Gaps = 226/586 (38%)
Query: 11 TAFKVKPSSSLRNSKKPISLNSE--NEPSSLHSNSVSTVEEKTKL---LKYLSENS---- 61
+ K + ++ I N+ +VS ++ KL L L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 62 -------KS---GEVELNDAL-CFFNYMIH-------MQPTPFMPSFNSLL--------- 94
K+ +V L+ + C ++ I P + LL
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 95 GALAGKKYYVNFICLSERLNTIGLLPDFV-SLNIL--------MNCF---CKMI------ 136
+ + + L + + L +L N F CK++
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT--EASGLFTKFVAFDCRPNVIP 194
V+D L S D ++ T E L K++ DCRP +P
Sbjct: 276 QVTD---FLSAATTTHISLDHHSMT-----------LTPDEVKSLLLKYL--DCRPQDLP 319
Query: 195 NVIC-----YASIIDGLCKDGF-------------VNKVRVLFL------DMKGR----G 226
+ SII +DG + + L + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 227 IYPDAFVYNSLI--RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCS 284
++P ++ I + + W D + V
Sbjct: 380 VFPP----SAHIPTILLS--LIWFDVI----------KSDVM-----------------V 406
Query: 285 IINSLCKDVLVDK-AKE-------LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL 336
++N L K LV+K KE ++L++K + + + ++ S++D Y +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHY----------NI 455
Query: 337 FVSIESEGCIPDT-SSYNTLINSYSKI----EKVEEALSLYGEMISMGVRPDNSCILEAA 391
+ +S+ IP Y YS I + +E E
Sbjct: 456 PKTFDSDDLIPPYLDQY-----FYSHIGHHLKNIEHP--------------------ERM 490
Query: 392 ELFRTLHNTKFELDLTVFNCLVDGLCKSW---RLR---SAW-------ELFKKLPRYGP- 437
LFR + LD + ++R +AW ++L Y P
Sbjct: 491 TLFRMVF-----LDF------------RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 438 -EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLH 482
N Y ++ + D LP +EE + K +LL
Sbjct: 534 ICDNDPKYERLVNAI---------LDFLPKIEENLICS-KYTDLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 52/297 (17%), Positives = 88/297 (29%), Gaps = 83/297 (27%)
Query: 261 HEEFVNGNGELGVI--CHPDVLSYC--SIINSL-CKDVLVDKAKELFLDMKSRGII--PD 313
H +F E G + D+LS + +++ CKDV D K + + II D
Sbjct: 6 HMDF-----ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKD 59
Query: 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYG 373
+ +LF ++ S+ K VEE L
Sbjct: 60 ---------------AVSGTLRLFWTLLSKQE-----------EMVQKF--VEEVL---- 87
Query: 374 EMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS---------WRLRS 424
R + ++ +T + ++ D L RL+
Sbjct: 88 -------RINYKFLMSP---IKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 425 AWELFKKLPRYGPEPNVVTY-------TVMICGLCIEGGIEKAYDLLPDMEEKI-----R 472
+L + L P NV+ T + +C +Y + M+ KI +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC------LSYKVQCKMDFKIFWLNLK 190
Query: 473 ECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529
C +L + K + D S + N H L L E+ L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 5e-04
Identities = 26/162 (16%), Positives = 53/162 (32%), Gaps = 28/162 (17%)
Query: 229 PD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL-SYCSII 286
PD A N+L + +E+ + ALE+++ + + P+V + ++
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-------DPNVAKTKNNLA 202
Query: 287 NSLCKDVLVDKAKELF---LDMKSRGII----PDV-VVYSSLIDGYCLMGRIDDARKLFV 338
+ K +A+ L+ L + ++ + G+ D
Sbjct: 203 SCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG- 261
Query: 339 SIESEGCI-------PDT-SSYNTLINSYSKIEKVEEALSLY 372
E G P ++ L Y + K E A +L
Sbjct: 262 --EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.99 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.96 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.54 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.37 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.28 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.22 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.14 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.05 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.94 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.73 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.66 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.53 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.37 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.35 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.18 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.16 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.11 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.05 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.51 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.48 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.37 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.29 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.17 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.72 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.58 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.35 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.03 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.15 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.84 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.72 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.52 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.31 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.7 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.59 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.86 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.52 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.62 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.03 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.07 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.05 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.44 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.86 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.82 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.15 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.12 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.34 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=298.81 Aligned_cols=436 Identities=9% Similarity=-0.064 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
.+..+...+..+ +.++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+
T Consensus 68 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 68 SFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 344444444433 3345555666666666666666666666666532 3455555566666666666666666666
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD-----------CRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
.+... +++..+++.++.+|.+.|++++|+++|+++.... ...+...+..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 55432 3455566666666666666666666665321110 0000012355566666666666666666
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHH-------------------------------HhcCChhhhhcchHHHHHHHHHH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVY-------------------------------CCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~-------------------------------~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
.++|++|.+.+.. +...+..+...+ ...+..-...+.+++|+++|+.+
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 6666666543211 222222221100 00011111112223333355544
Q ss_pred HhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
... +++..+++.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+..
T Consensus 299 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 299 NGL--------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp TTG--------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcC--------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 331 2455555555666666666666666665555443 1244555555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------cccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 345 CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD--------------NSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 345 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
. .+..+|+.++..|.+.|++++|.++|+++.+.. |+ .++.++|+++|+.+.+.+. .+..+|.
T Consensus 370 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 445 (597)
T 2xpi_A 370 P-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYL 445 (597)
T ss_dssp T-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHH
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHH
Confidence 2 245555555555555555555555555555421 22 4455555555555554432 2556666
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------------- 470 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 470 (531)
.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~ 524 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH
Confidence 67777777777777777777666542 235666667777777777777777776666432
Q ss_pred ----HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 471 ----IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 471 ----i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
.|++++|..+++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++...++..
T Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 525 AYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 166677777777777655 3478999999999999999999999999988776543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=276.93 Aligned_cols=411 Identities=12% Similarity=0.041 Sum_probs=351.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+|+++... .|+..+|..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|..+
T Consensus 97 ~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 45999999999999864 457789999999999999999999999998654 67899999999999999999999999
Q ss_pred HHHHHHC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH--------
Q 038190 145 LGRILRK---------------VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS-------- 201 (531)
Q Consensus 145 ~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------- 201 (531)
|+++... +...+..+|+.++.+|.+.|++++|+++|+++...+ |+ +...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~---~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AK---CYEAFDQLVSNHLLT 247 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---CHHHHHHHHHTTCSC
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ch---hhHHHHHHHHhhccc
Confidence 9853222 223357899999999999999999999999999863 32 3333333
Q ss_pred ------------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh
Q 038190 202 ------------------------------IIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK 251 (531)
Q Consensus 202 ------------------------------l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 251 (531)
++..|.+.|++++|.++|+++.+. +++..+|..++.+|.+.|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 355667889999999999998875 579999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038190 252 GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRID 331 (531)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 331 (531)
. +|+.+...+ +.+..+++.++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|+++
T Consensus 326 ~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 326 A-------ITTKILEID-------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp H-------HHHHHHHHC-------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred H-------HHHHHHHcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9 888887665 3477889999999999999999999999998653 457889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------------cccHHHHHHHHHHHHh
Q 038190 332 DARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD------------NSCILEAAELFRTLHN 399 (531)
Q Consensus 332 ~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~a~~~~~~~~~ 399 (531)
+|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+.... .+.+++|.++|+.+.+
T Consensus 391 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 391 EARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999886433 688999999999999999999999999987543222 6889999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---
Q 038190 400 TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK--- 470 (531)
Q Consensus 400 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 470 (531)
.... +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++|+++.+.
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 6543 7899999999999999999999999999875 66888 789999999999999999999999999876
Q ss_pred --------------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038190 471 --------------IRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504 (531)
Q Consensus 471 --------------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (531)
.|++++|..+++++++... .+...+..+..+|.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 2999999999999998653 35667777776664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=227.99 Aligned_cols=376 Identities=15% Similarity=0.052 Sum_probs=320.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+.|+.+.+..|. +...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 56999999999999987765 66778888888999999999999999998765 66788999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
|+++++..+ .+..+|..+..++...|++++|+..|+++... .|+ +...+..+...+...|++++|...|+++.+
T Consensus 90 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 90 YRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD---LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998753 25668999999999999999999999999986 443 567888899999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.. +-+..+|..+...+...|++++|.. .|+++...+ +.+...+..+...+...|++++|...|++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIH-------HFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 2257889999999999999999888 666666544 34577899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
..+.. +.+..++..+..+|.+.|++++|...|+++.+.+.. +..+|..+...|.+.|++++|...|+++.+.. |
T Consensus 229 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-- 302 (388)
T 1w3b_A 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC--P-- 302 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--T--
T ss_pred HHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c--
Confidence 88763 336788999999999999999999999999987543 57789999999999999999999999998742 3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
.+..++..++..+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|++.|
T Consensus 303 -------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 303 -------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 378899999999999999999999999999852 345788999999999999999998877
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCC
Q 038190 465 PDMEEKIRECLKAIELLHKMAKRYVKP-DEITVSILEELLNKDEN 508 (531)
Q Consensus 465 ~~~~~~i~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 508 (531)
+++.+ ..| +...+..+..++.+.|+
T Consensus 363 ~~a~~-------------------~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIR-------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHT-------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHh-------------------hCCCCHHHHHhHHHHHHHccC
Confidence 66543 234 45677778887776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=250.73 Aligned_cols=214 Identities=14% Similarity=0.201 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh--c
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK--G 252 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~--~ 252 (531)
.+..+.+++.+.+.... ....++.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+...++. .
T Consensus 8 ~~e~L~~~~~~k~~~~s---pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~ 84 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQS---PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP 84 (501)
T ss_dssp ----------------C---HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCH
T ss_pred hHHHHHHHHHHhcccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcc
Confidence 34555566665544431 345688899999999999999999999999999999999999999999887765543 2
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.++.|.++|++|...| +.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 85 ~l~~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp HHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 4677888999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 412 (531)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..| +..||+.+
T Consensus 159 A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p----------------------s~~T~~~l 216 (501)
T 4g26_A 159 AYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV----------------------SKSTFDMI 216 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB----------------------CHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc----------------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999999988766 88899999
Q ss_pred HHHHHcC
Q 038190 413 VDGLCKS 419 (531)
Q Consensus 413 ~~~~~~~ 419 (531)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9988763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-30 Score=249.72 Aligned_cols=207 Identities=11% Similarity=0.123 Sum_probs=180.4
Q ss_pred hHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc
Q 038190 213 NKVRVLFLDMKGRGIYPDA-FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK 291 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 291 (531)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|.. +|++|...| +.||..+|+.+|.+|++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~-------lf~~M~~~G------v~pd~~tyn~Li~~c~~ 73 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALR-------LYDEARRNG------VQLSQYHYNVLLYVCSL 73 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHH-------HHHHHHHHT------CCCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHH-------HHHHHHHcC------CCCCHhHHHHHHHHHHh
Confidence 4456666778777766544 468889999999999999999 999999999 99999999999999987
Q ss_pred CCC---------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 292 DVL---------VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 292 ~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
.+. +++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~ 153 (501)
T 4g26_A 74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 153 (501)
T ss_dssp CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence 664 68899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
|++++|.++|++|.+.|+.| |..+|++||.+|++.|++++|.+++++|.+.|..|+..
T Consensus 154 g~~~~A~~l~~~M~~~G~~P----------------------d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 154 GDADKAYEVDAHMVESEVVP----------------------EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp TCHHHHHHHHHHHHHTTCCC----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCHHHHHHHHHHHHhcCCCC----------------------CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999999999988766 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 038190 443 TYTVMICGLCIE 454 (531)
Q Consensus 443 ~~~~l~~~~~~~ 454 (531)
||+.++..+...
T Consensus 212 T~~~l~~~F~s~ 223 (501)
T 4g26_A 212 TFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHSH
T ss_pred HHHHHHHHHhcC
Confidence 999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=221.85 Aligned_cols=367 Identities=12% Similarity=0.012 Sum_probs=311.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|+++.|...++..++.. +.+..+|..+..+|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999998774 4556677888888999999999999999998875 3477899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+++|+..|+++... .|+ +..+|..+..++...|++++|...|+++.+.... +...+..+...+...|++++|..
T Consensus 83 ~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRL--KPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHc--Ccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999886 453 6778999999999999999999999999875322 45567778888888899988888
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.|+.+.... +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++
T Consensus 157 -------~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 157 -------CYLKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp -------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred -------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 676666654 3457889999999999999999999999999864 3357788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 412 (531)
|...|++..+..+. +..++..+...|...|++++|...|+++.+.. |+ +..+|..+
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~~~~~l 277 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PH---------------------FPDAYCNL 277 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SS---------------------CHHHHHHH
T ss_pred HHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC---------------------CHHHHHHH
Confidence 99999999887543 67889999999999999999999999998743 32 67889999
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCC
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPD 492 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~ 492 (531)
+.+|.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|++.++++.+ . .+.+
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------~-~p~~ 338 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE-----------------V-FPEF 338 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-----------------S-CTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------c-CCCc
Confidence 999999999999999999999852 45788999999999999999999877765543 1 2345
Q ss_pred HHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 493 EITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 493 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
..++..++.+|.+.|++++|.+.++++...++.
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 778999999999999999999999998765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-22 Score=197.18 Aligned_cols=333 Identities=11% Similarity=-0.002 Sum_probs=262.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGR 147 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 147 (531)
...+...|..+....|. +...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33444555555554443 67789999999999999999999999998764 56788999999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH---HhHHHH------------HHHHHhcCCh
Q 038190 148 ILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV---ICYASI------------IDGLCKDGFV 212 (531)
Q Consensus 148 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~ 212 (531)
+++.++. +..++..+..+|...|++++|...|+++... .|. +. .++..+ ...+...|++
T Consensus 86 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 86 VIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPS---ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9988643 6789999999999999999999999999875 332 44 566655 4448899999
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC
Q 038190 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD 292 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 292 (531)
++|...|+++.+.. +.+...+..+..+|...|++++|.. .|+.+.... +.+..++..+..+|...
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAIS-------DLKAASKLK-------NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHH-------HHHHHHHHH-------CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHc
Confidence 99999999998753 3377889999999999999999999 666655543 45678999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSL------------IDGYCLMGRIDDARKLFVSIESEGCIPD----TSSYNTLI 356 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~g~~p~----~~~~~~li 356 (531)
|++++|...|+.+.+.. +.+...+..+ ...|...|++++|...|+++.+.... + ...|..+.
T Consensus 225 g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHH
Confidence 99999999999998753 2244445444 78899999999999999999886432 2 44788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..+.+.|++++|...++++.+.. |+ +..+|..++.+|...|++++|...|+++.+.
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~~--p~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~- 358 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQME--PD---------------------NVNALKDRAEAYLIEEMYDEAIQDYETAQEH- 358 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cc---------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 99999999999999999987642 32 7889999999999999999999999999984
Q ss_pred CCCc-HHHHHHHHHH
Q 038190 437 PEPN-VVTYTVMICG 450 (531)
Q Consensus 437 ~~p~-~~~~~~l~~~ 450 (531)
.|+ ...+..+..+
T Consensus 359 -~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 359 -NENDQQIREGLEKA 372 (450)
T ss_dssp -SSSCHHHHHHHHHH
T ss_pred -CcchHHHHHHHHHH
Confidence 454 5555555533
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=199.51 Aligned_cols=367 Identities=11% Similarity=-0.020 Sum_probs=298.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|+++...+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+..++..+..++...|++++|...
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 469999999999999966 588999999999999999999999999999876 55678999999999999999999999
Q ss_pred HHHHHHCCCCCC--------------------------------------------------------------------
Q 038190 145 LGRILRKVFSPD-------------------------------------------------------------------- 156 (531)
Q Consensus 145 ~~~~~~~~~~~~-------------------------------------------------------------------- 156 (531)
|+++.+.+...+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 999988753211
Q ss_pred ----------hhhHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCC----CCcHHhHHHHHHHHHhcCChhH
Q 038190 157 ----------VVTLGCLIRGLCM---QGKFTEASGLFTKFVA-----FDCRPNV----IPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 157 ----------~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
...+..+...+.. .|++++|+..|+++.. ....|+. ..+..++..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 2222233333333 7999999999999987 3222221 1246688889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 215 VRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 215 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
|...|+++.+... +...+..+...+...|++++|.. .++...... +.+..++..+...+...|+
T Consensus 256 A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 256 AHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYN-------YFDKALKLD-------SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGG-------HHHHHHTTC-------TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHH-------HHHHHhhcC-------cCCHHHHHHHHHHHHHhCC
Confidence 9999999987643 37888889999999999999999 777776654 3466788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
+++|...++.+.+... .+...+..+...|...|++++|...++++.+.... +...+..+...|...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988743 35678888999999999999999999999886433 567888999999999999999999998
Q ss_pred HHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 375 MISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK---SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 375 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
+.+...... .......++..+..+|.. .|++++|...++++.+.. +.+..++..+..+|
T Consensus 398 a~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 398 AIELENKLD-----------------GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHHTSS-----------------SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhhhccc-----------------hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 876321100 000014489999999999 999999999999998853 33677888999999
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 038190 452 CIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 452 ~~~g~~~~A~~~~~~~~~~ 470 (531)
...|++++|.+.|++..+.
T Consensus 460 ~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999998888876654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-23 Score=204.30 Aligned_cols=400 Identities=13% Similarity=0.046 Sum_probs=280.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++++..+. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 455566666667777777777777766654 445666666666777777777777777776665432 555666666677
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CCCCCHh---------
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GIYPDAF--------- 232 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~--------- 232 (531)
...|++++|+..|+.+ .. .|+ .....+..+...+....|...++.+... ...|+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~------~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGD------FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHH-hc--CCC------CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 7777777777766522 21 111 1111233334444445566666555432 1111111
Q ss_pred ---------------------hHHHHHHHHHh-cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 233 ---------------------VYNSLIRVYCC-AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 233 ---------------------~~~~li~~~~~-~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
....+...+.. .+.+..+.+.+++|+.+++.+....+........-..++..+...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 11112222111 14556666778888889999988652100000000335777778889
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038190 291 KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALS 370 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 370 (531)
..|++++|...++.+.+. .|+...+..+...|...|++++|...|+++.+.... +..+|..+...|...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999986 456888889999999999999999999999887543 67889999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 371 LYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
.|+++.+.. |+ +...+..+..+|...|++++|..+++++.+.. +.+...+..+..+
T Consensus 332 ~~~~a~~~~--~~---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 332 DFQKAQSLN--PE---------------------NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp HHHHHHHHC--TT---------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHhC--CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 999998743 22 56789999999999999999999999998853 3357788899999
Q ss_pred HHHcCCHHHHHHHHHHHHHH-----------------------H----------hhHHHHHHHHHHHHHcCCCCCHHHHH
Q 038190 451 LCIEGGIEKAYDLLPDMEEK-----------------------I----------RECLKAIELLHKMAKRYVKPDEITVS 497 (531)
Q Consensus 451 ~~~~g~~~~A~~~~~~~~~~-----------------------i----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 497 (531)
+...|++++|++.|+++.+. . +++++|+..++++++.. +.+...+.
T Consensus 388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 466 (537)
T 3fp2_A 388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKI 466 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 99999999999999998775 2 88999999999999765 34678899
Q ss_pred HHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 498 ILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
.++.+|.+.|++++|.+.+++....++..
T Consensus 467 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 467 GLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999977765543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-23 Score=202.55 Aligned_cols=379 Identities=12% Similarity=-0.033 Sum_probs=288.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|......+.+.|++++|+..|+++.+.. |+..+|..+..++.+.|++++|...++++++..+ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567777888999999999999999999875 6899999999999999999999999999998864 367899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCC------------------------------------------------------
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNV------------------------------------------------------ 192 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~------------------------------------------------------ 192 (531)
|...|++++|+..|+++...+.....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876421100
Q ss_pred --------------------CCcHHhHHHHHHHHHh---cCChhHHHHHHHHHhh-----CCCC--------CCHhhHHH
Q 038190 193 --------------------IPNVICYASIIDGLCK---DGFVNKVRVLFLDMKG-----RGIY--------PDAFVYNS 236 (531)
Q Consensus 193 --------------------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~ 236 (531)
..+...+......+.. .|++++|..+|+++.+ ..-. .+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0012333333333443 7888888888888876 3111 13456667
Q ss_pred HHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHH
Q 038190 237 LIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVV 316 (531)
Q Consensus 237 li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 316 (531)
+...+...|++++|.. .++.+.... |+...+..+..++...|++++|...++.+.+.. +.+...
T Consensus 243 ~~~~~~~~~~~~~A~~-------~~~~~l~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHE-------DIKKAIELF--------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHSSCHHHHHH-------HHHHHHHHC--------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred HHHHHHHCCCHHHHHH-------HHHHHHhhC--------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 7777888888777777 666665544 337778888888888888888888888887763 335667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 396 (531)
+..+...|...|++++|...|+++.+.... +...+..+...|...|++++|...++++.+.. |+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 370 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PE------------- 370 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TT-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--cc-------------
Confidence 788888888888888888888888876543 56677888888888888888888888877632 21
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC-CCc----HHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 038190 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP-EPN----VVTYTVMICGLCI---EGGIEKAYDLLPDME 468 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 468 (531)
+..++..+...|...|++++|...++++.+... .++ ...|..+..++.. .|++++|++.|+++.
T Consensus 371 --------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 371 --------APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp --------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 567888899999999999999999998876311 111 3378888888888 898888887776654
Q ss_pred HHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhh
Q 038190 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 469 ~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 526 (531)
+. . +.+...+..++.+|.+.|++++|...+++....++..
T Consensus 443 ~~-----------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 443 KL-----------------D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HH-----------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred Hh-----------------C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 43 2 3356777888888888899999888888876665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-21 Score=188.44 Aligned_cols=288 Identities=11% Similarity=0.033 Sum_probs=243.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+.+|+.+.+..+. +..+|..+...+...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|...
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45999999999999987665 78899999999999999999999999999876 55688999999999999999999999
Q ss_pred HHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc
Q 038190 145 LGRILRKVFSPDV---VTLGCL------------IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 145 ~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (531)
|+++.+..+. +. .++..+ ...+...|++++|+..|+++... .|. +..++..+..+|...
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 117 FKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVW---DAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---ChHHHHHHHHHHHHC
Confidence 9999987532 33 555555 44588999999999999999886 442 788999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHH----
Q 038190 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSI---- 285 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 285 (531)
|++++|...|+++.+.. +.+..++..+...|...|++++|.. .|+.+.... +.+...+..+
T Consensus 191 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~~~~~~-------p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLS-------EVRECLKLD-------QDHKRCFAHYKQVK 255 (450)
T ss_dssp TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CChHHHHHHHHHHH
Confidence 99999999999998753 3368889999999999999999988 666666543 2334444444
Q ss_pred --------HHHHhcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 038190 286 --------INSLCKDVLVDKAKELFLDMKSRGIIPD-----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSY 352 (531)
Q Consensus 286 --------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~ 352 (531)
...+...|++++|..+|+.+.+. .|+ ...+..+..++.+.|++++|...++++.+... .+...|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP-DNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 78899999999999999999885 344 45788889999999999999999999987643 268899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 353 NTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 353 ~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+..+|...|++++|...|+++.+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999873
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-20 Score=185.34 Aligned_cols=365 Identities=13% Similarity=0.037 Sum_probs=268.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++++|+..|+.+.+..|. +..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 356999999999999998776 78899999999999999999999999999876 5578899999999999999999999
Q ss_pred HHHHHHHCCCCCChh-----------------------------------------------------------------
Q 038190 144 ALGRILRKVFSPDVV----------------------------------------------------------------- 158 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 158 (531)
.|+. ....+.....
T Consensus 115 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (537)
T 3fp2_A 115 DLSV-LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY 193 (537)
T ss_dssp HHHH-HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred HHHH-HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence 9963 3221111100
Q ss_pred --hHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCCCCCc-----HHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 159 --TLGCLIRGLC--------MQGKFTEASGLFTKFVAFDCRPNVIPN-----VICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 159 --~~~~li~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
....+...+. ..|++++|+.+|+++... .|+. ++ ..++..+...+...|++++|...|+++.
T Consensus 194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVD-DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCC-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCc-chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1111111111 114678888888888765 3320 11 2246666777888888899999888888
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
+. .|+...+..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFK-------FFQKAVDLN-------PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHH-------HHHHHhccC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 75 3456777778888888888888777 555555543 3456778888888888899999999888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+...|...|++++|...|+++.+.....
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 411 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ- 411 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-
Confidence 887763 224567888888888889999999999888876433 56678888888888899999988888876532100
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------CChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS----------WRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI 453 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 453 (531)
.........+..+..++... |++++|...|+++.+.. +.+...+..+..+|..
T Consensus 412 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 412 ----------------EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp ----------------SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 00111233355566777777 99999999999998853 3367888999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 038190 454 EGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 454 ~g~~~~A~~~~~~~~~~ 470 (531)
.|++++|++.|++..+.
T Consensus 475 ~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 99999999999887765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-18 Score=162.72 Aligned_cols=319 Identities=12% Similarity=0.006 Sum_probs=203.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+..+. +..++..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4566677777777788888888888777654 445667777777777778888888888777776432 55677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI------------IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVY 234 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 234 (531)
+...|++++|...|+++.... |....+...+..+ ...+...|++++|...|+++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 777888888888887777642 2000033344444 456666777777777777766542 2245566
Q ss_pred HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV 314 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 314 (531)
..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++...+... .+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~ 222 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAIS-------DLKAASKLK-------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHK 222 (359)
T ss_dssp HHHHHHHHHTTCHHHHHH-------HHHHHHTTC-------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cch
Confidence 666666676666666666 555555443 34556666677777777777777777776665421 122
Q ss_pred HHHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 315 VVYS------------SLIDGYCLMGRIDDARKLFVSIESEGCIPDT----SSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 315 ~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+. .+...+.+.|++++|...++++.+.... +. ..+..+...|.+.|++++|...+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222 2245567777777777777777765432 22 22444566777777777777777777663
Q ss_pred CCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHH
Q 038190 379 GVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN-VVTYTVMICGL 451 (531)
Q Consensus 379 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~ 451 (531)
.|+ +..++..+..+|...|++++|...|+++.+. .|+ ...+..+..+.
T Consensus 302 --~~~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 302 --EPD---------------------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp --CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred --Ccc---------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 222 5667777777777777777777777777764 343 44444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-18 Score=160.20 Aligned_cols=303 Identities=11% Similarity=-0.017 Sum_probs=246.3
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
+...+..+...+...|++++|...|+++++..+. +..++..+..++...|++++|+..|+++... .|+ +..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 75 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD---FTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---cchHHH
Confidence 4567788889999999999999999999987543 6789999999999999999999999999986 442 678899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCC--CCHhhHHHH------------HHHHHhcCChhhhhcchHHHHHHHHHHHh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIY--PDAFVYNSL------------IRVYCCAVNWEDAKGNTSAALELHEEFVN 266 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 266 (531)
.+...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.. .++.+..
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~-------~~~~~~~ 148 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT-------FLDKILE 148 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH-------HHHHHHH
Confidence 9999999999999999999999875320 133444444 467778888888877 7776666
Q ss_pred CCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 267 GNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+....
T Consensus 149 ~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 149 VC-------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 54 4567889999999999999999999999998874 447888999999999999999999999999886433
Q ss_pred CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH----HHHH
Q 038190 347 PDTSSYN------------TLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL----TVFN 410 (531)
Q Consensus 347 p~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 410 (531)
+...+. .+...+.+.|++++|...++++.+.. |+ +. ..+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~---------------------~~~~~~~~~~ 276 (359)
T 3ieg_A 221 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS---------------------VAEYTVRSKE 276 (359)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CS---------------------SHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC---------------------chHHHHHHHH
Confidence 333333 23667889999999999999987743 21 22 3466
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 411 CLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+..+|...|++++|..++++..+.. +.+..+|..+..+|...|++++|++.|+++.+
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999998852 33688999999999999999999888876554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-16 Score=154.38 Aligned_cols=337 Identities=13% Similarity=-0.004 Sum_probs=189.0
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCcchHHHHHHHHHHCCCCCCh
Q 038190 86 FMPSFNSLLGALAG----KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----MIGVSDAFVALGRILRKVFSPDV 157 (531)
Q Consensus 86 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 157 (531)
+..++..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|..+|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555666666655 666777777777666654 45556666666665 666777777777666654 44
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCC
Q 038190 158 VTLGCLIRGLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK----DGFVNKVRVLFLDMKGRGIYP 229 (531)
Q Consensus 158 ~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p 229 (531)
..+..|...|.. .+++++|+..|++....+ +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 555556666666 566777777776666532 44556666666665 566777777776666553
Q ss_pred CHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHH
Q 038190 230 DAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKEL 301 (531)
Q Consensus 230 ~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~ 301 (531)
+...+..+...|.. .++.++|.. .|+.....+ +..++..+...|.. .+++++|..+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~-------~~~~a~~~~---------~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQ-------WYRKSATSG---------DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHH-------HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 45555555555554 344444444 555555443 34455555555554 5667777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHH
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI-----EKVEEALSLY 372 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~ 372 (531)
|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|+.+|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 76666553 34455555555555 666777777777666553 444555556666555 6666666666
Q ss_pred HHHHhCCCCCC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhC
Q 038190 373 GEMISMGVRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRY 435 (531)
Q Consensus 373 ~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 435 (531)
++..+.+.... ..+.++|+..++...+.+ ++..+..|...|.. .+++++|..+|++..+.
T Consensus 320 ~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 320 TKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66655431000 012233333333333322 44555555555555 55555555555555553
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCI----EGGIEKAYDLLPD 466 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 466 (531)
| ++..+..+...|.. .+++++|.+.|++
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 2 34445555555554 4555555444433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-16 Score=154.74 Aligned_cols=328 Identities=12% Similarity=0.058 Sum_probs=272.9
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----c
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAG----KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----M 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 135 (531)
..++++.|...|+...+.+ +..++..|...|.. .+++++|+..|++..+.| +...+..|...|.. .
T Consensus 55 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 55 TTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 4579999999999998864 56788888889988 899999999999999876 66778888888887 7
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh---
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM----QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK--- 208 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 208 (531)
+++++|..+|++..+.| +...+..|...|.. .+++++|+..|++....+ +..++..+...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-------NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHhcCCC
Confidence 89999999999999876 56778888888887 789999999999998752 67788889999988
Q ss_pred -cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 209 -DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 209 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
.++.++|..+|++..+.| +...+..+...|.. .+++++|.. +|+.....+ +...+.
T Consensus 199 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~-------~~~~a~~~~---------~~~a~~ 259 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV-------LFSQSAEQG---------NSIAQF 259 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHTTT---------CHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH-------HHHHHHHCC---------CHHHHH
Confidence 899999999999998875 55667777777765 455555555 888877665 455677
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 284 SIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM-----GRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 284 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
.+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|...|++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 899999999999998764 566777888888887 89999999999999875 5667778
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCC---------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038190 355 LINSYSKIE---KVEEALSLYGEMISMGVRPD---------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416 (531)
Q Consensus 355 li~~~~~~~---~~~~a~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 416 (531)
+...|...| +.++|+++|++..+.+. +. .++.++|...++...+.+ +...+..|...|
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y 409 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKGE-KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIY 409 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 888887766 78999999999887642 21 478899999999999876 678899999999
Q ss_pred Hc----CCChHHHHHHHHHhhhCC
Q 038190 417 CK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 417 ~~----~g~~~~A~~~~~~~~~~g 436 (531)
.. .+++++|...|++..+.+
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC
Confidence 98 899999999999999864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-18 Score=159.35 Aligned_cols=293 Identities=11% Similarity=-0.022 Sum_probs=240.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.+...+..+...+...|++++|+.+|+++.+.. +.+..++..++.++...|++++|...++++.+..+. +..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 356678888888899999999999999998775 556677888888899999999999999999987533 677888899
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 165 RGLCMQG-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 165 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
..+...| ++++|...|++.... .|. +..+|..+...+...|++++|...|+++.+.... +...+..+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL--EKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT--CTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh--CCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 9999999 999999999999876 342 5778999999999999999999999998875322 45667778888999
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CCCCHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG--------IIPDVV 315 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~ 315 (531)
.|++++|.. .++...... +.+...+..+...+...|++++|...++++.+.. .+.+..
T Consensus 172 ~~~~~~A~~-------~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 172 TNNSKLAER-------FFSQALSIA-------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp TTCHHHHHH-------HHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred HhhHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 998888888 777777654 4567888999999999999999999999887641 133457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
++..+...|...|++++|...|++..+.... +...|..+...|.+.|++++|...|++..+. .|+
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~------------ 302 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRD------------ 302 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCC------------
Confidence 8889999999999999999999999887543 6788899999999999999999999988763 343
Q ss_pred HHHhCCCCCCHHHHHHHHHHH-HcCCChH
Q 038190 396 TLHNTKFELDLTVFNCLVDGL-CKSWRLR 423 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 423 (531)
+...+..+..++ ...|+.+
T Consensus 303 ---------~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 ---------DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ---------CHHHHHHHHHHHHTTTTC--
T ss_pred ---------chHHHHHHHHHHHHHhCchh
Confidence 777888888887 4556543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-18 Score=156.24 Aligned_cols=294 Identities=13% Similarity=0.001 Sum_probs=241.9
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHh
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 198 (531)
+.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|..+++++... .|. +..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL--YPS---NPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---STHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC---CHHH
Confidence 556778888899999999999999999999987543 6667778889999999999999999999986 442 6788
Q ss_pred HHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 199 YASIIDGLCKDG-FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 199 ~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
|..+...+...| ++++|...|++..+... .+...|..+...+...|++++|.. .++...... +.
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~a~~~~-------~~ 157 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMA-------AYFTAAQLM-------KG 157 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHH-------HHHHHHHHT-------TT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHH-------HHHHHHHhc-------cc
Confidence 999999999999 99999999999987642 256778899999999999999888 666655543 33
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCCH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC--------IPDT 349 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--------~p~~ 349 (531)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+... ....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 45677779999999999999999999998874 44678899999999999999999999999876421 2345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
..+..+...|...|++++|...+++..+.. |+ +..++..+..+|...|++++|...|
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~---------------------~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQ---------------------NASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--cc---------------------chHHHHHHHHHHHHhccHHHHHHHH
Confidence 788999999999999999999999988743 22 6778999999999999999999999
Q ss_pred HHhhhCCCCCcHHHHHHHHHHH-HHcCCHH
Q 038190 430 KKLPRYGPEPNVVTYTVMICGL-CIEGGIE 458 (531)
Q Consensus 430 ~~~~~~g~~p~~~~~~~l~~~~-~~~g~~~ 458 (531)
+++.+.. +.+...+..+..++ ...|+.+
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9998852 23577777888777 4556543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-17 Score=159.48 Aligned_cols=404 Identities=10% Similarity=-0.034 Sum_probs=280.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCF-CKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~~~~a~~ 143 (531)
.|+++.|..+|+++.+..|. +...|...+..+.+.|++++|..+|++++... |+...|...+... ...|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHH
Confidence 56999999999999987665 77889999999999999999999999998774 6777777777533 45678887765
Q ss_pred ----HHHHHHH-CCCCC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHH--
Q 038190 144 ----ALGRILR-KVFSP-DVVTLGCLIRGLCM---------QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL-- 206 (531)
Q Consensus 144 ----~~~~~~~-~~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 206 (531)
+|+..+. .|..| +...|...+....+ .|+++.|..+|++.+. .|.. .....|.......
T Consensus 102 ~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~---~P~~-~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 102 KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV---NPMI-NIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT---SCCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh---chhh-hHHHHHHHHHHHHHh
Confidence 7776655 35443 56788888887776 6889999999999987 2321 1234454433321
Q ss_pred -----------HhcCChhHHHHHHHHH------hhCC---CCCC--------HhhHHHHHHHHHhcC-ChhhhhcchHHH
Q 038190 207 -----------CKDGFVNKVRVLFLDM------KGRG---IYPD--------AFVYNSLIRVYCCAV-NWEDAKGNTSAA 257 (531)
Q Consensus 207 -----------~~~~~~~~a~~~~~~m------~~~g---~~p~--------~~~~~~li~~~~~~~-~~~~a~~~~~~a 257 (531)
.+.+++..|..++..+ .+.. ++|+ ...|...+......+ ..++.......+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 1245677777777663 2221 2343 234444443322211 011110012344
Q ss_pred HHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc-------CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 258 LELHEEFVNGNGELGVICHPDVLSYCSIINSLCK-------DVLVD-------KAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
+.+|++..... +.+...|...+..+.+ .|+++ +|..+|+...+.-.+.+...|..++..
T Consensus 258 ~~~y~~al~~~-------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 258 MFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45666666543 4467788888887775 78877 899999998863233468889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCC
Q 038190 324 YCLMGRIDDARKLFVSIESEGCIPD-TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|++..+.. |.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~------------------- 388 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT------------------- 388 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TC-------------------
T ss_pred HHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CC-------------------
Confidence 99999999999999999986322 3 2578888888888999999999999987642 21
Q ss_pred CCCHHHHHHHHHH-HHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHH
Q 038190 403 ELDLTVFNCLVDG-LCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELL 481 (531)
Q Consensus 403 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~ 481 (531)
+...|...+.. +...|++++|..+|++..+.. +-++..|..++..+.+.|+.++|..+|++...
T Consensus 389 --~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~------------ 453 (530)
T 2ooe_A 389 --RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT------------ 453 (530)
T ss_dssp --CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------------
T ss_pred --chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh------------
Confidence 23333333222 336899999999999988752 23578888999999899999888777765433
Q ss_pred HHHHHcC-CCCC--HHHHHHHHHHHhccCChhHHHhhHHHhhhcch
Q 038190 482 HKMAKRY-VKPD--EITVSILEELLNKDENCHECMNLLPSFLSRNQ 524 (531)
Q Consensus 482 ~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 524 (531)
.. ..|+ ...|..++....+.|+.+.+..+.+++....+
T Consensus 454 -----~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 454 -----SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 22 2332 45788888888889999999988887765544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-18 Score=159.83 Aligned_cols=289 Identities=13% Similarity=0.024 Sum_probs=229.2
Q ss_pred CcCCHHHHHH-HHHHHHHcCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc
Q 038190 64 GEVELNDALC-FFNYMIHMQPT---PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 64 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 139 (531)
..|++++|.. .|+......+. .+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3468999998 88877664432 245678899999999999999999999999875 567889999999999999999
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH---------------HHH
Q 038190 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS---------------IID 204 (531)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------------l~~ 204 (531)
+|...|+++++..+ .+..++..+..+|...|++++|+..|+++.... |. +...+.. .+.
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PA---YAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TT---TGGGCC---------------CTTH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC---cHHHHHHHHHHhhhhcccHHHHHHH
Confidence 99999999998864 378899999999999999999999999999864 32 2222221 233
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHH
Q 038190 205 GLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYC 283 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (531)
.+...|++++|...|+++.+..... +..++..+...+...|++++|.. .++...... +.+..++.
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------~~~~~~~~ 255 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVD-------CFTAALSVR-------PNDYLLWN 255 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------cCCHHHHH
Confidence 3448899999999999998753221 57888999999999999999988 555555543 34577899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----------CHHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP----------DTSSYN 353 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p----------~~~~~~ 353 (531)
.+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999998763 3467889999999999999999999999987653221 268899
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 038190 354 TLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 354 ~li~~~~~~~~~~~a~~~~~~ 374 (531)
.+..+|...|++++|..++.+
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-18 Score=158.74 Aligned_cols=304 Identities=11% Similarity=-0.028 Sum_probs=227.1
Q ss_pred HHccCCHHHHHH-HHHHHHhCCC---CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 97 LAGKKYYVNFIC-LSERLNTIGL---LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 97 ~~~~~~~~~a~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...|++++|++ .+++...... ..+...+..+...+.+.|++++|...|+++++..+ .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 334578999998 8887654421 11356788899999999999999999999999864 377899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHH---------------H
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNS---------------L 237 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------l 237 (531)
+++|+..|+++... .|+ +..++..+...+...|++++|...|+++...... +...+.. .
T Consensus 114 ~~~A~~~~~~al~~--~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPD---NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHHHHHHHHHHHhc--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 99999999999987 342 7889999999999999999999999999876432 2222211 2
Q ss_pred HHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 038190 238 IRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVY 317 (531)
Q Consensus 238 i~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 317 (531)
+..+...|++++|.. .++.+....+ ..++..++..+...+...|++++|...|+++.+.. +.+..++
T Consensus 188 ~~~~~~~~~~~~A~~-------~~~~a~~~~p-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 188 LGSLLSDSLFLEVKE-------LFLAAVRLDP-----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp THHHHHHHHHHHHHH-------HHHHHHHHST-----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhhcccHHHHHH-------HHHHHHHhCc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 333346777777777 7777666541 11157889999999999999999999999998763 3367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
..+...|...|++++|...|+++.+... .+...+..+...|.+.|++++|...|+++.+...... . -
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~----------~ 321 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR--G----------P 321 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC--C----------c
Confidence 9999999999999999999999988753 3678899999999999999999999998876321100 0 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
..........+|..+..+|...|++++|..++.+..
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 000011136789999999999999999998887554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-18 Score=158.98 Aligned_cols=273 Identities=12% Similarity=-0.015 Sum_probs=173.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLI 238 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 238 (531)
.+..+...+.+.|++++|+..|+++... .|+ +..+|..+...|...|++++|...|+++.+.. +.+..++..+.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3444455555555555555555555443 221 34445555555555555555555555544432 11344445555
Q ss_pred HHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 038190 239 RVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PDVVVY 317 (531)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 317 (531)
..|...|++++|...+++++++.......... .......+..+...+...|++++|..+|+++.+.... .+..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKN----KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhh----hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 55555555555555222222221111000000 0011234556688899999999999999999887422 168899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTL 397 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 397 (531)
..+...|...|++++|...|+++.+.... +..+|..+..+|...|++++|...|+++.+.. |+
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~-------------- 279 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PG-------------- 279 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC--------------
Confidence 99999999999999999999999987543 68899999999999999999999999988742 32
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC---C--------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038190 398 HNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP---E--------PNVVTYTVMICGLCIEGGIEKAYDLLP 465 (531)
Q Consensus 398 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (531)
+..++..+..+|...|++++|...|+++.+... . .+...|..+..++...|+.+.+.++.+
T Consensus 280 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 280 -------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp -------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred -------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 688999999999999999999999999986310 1 136788999999999999998876654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-17 Score=154.61 Aligned_cols=268 Identities=12% Similarity=-0.014 Sum_probs=216.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++++..+ .+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 355679999999999999999999999999875 56788999999999999999999999999998753 3678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHH----------hHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHhh
Q 038190 165 RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVI----------CYASIIDGLCKDGFVNKVRVLFLDMKGRGIY-PDAFV 233 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 233 (531)
.+|...|++++|+..|+++.... |. +.. .+..+...+...|++++|...|+++.+.... ++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PK---YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HH---HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--cc---chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 99999999999999999998753 21 222 3344588899999999999999999876322 25788
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (531)
+..+...+...|++++|.. .++...... +.+..+|..+..+|...|++++|...|+++.+.. +.+
T Consensus 216 ~~~l~~~~~~~g~~~~A~~-------~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 280 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAID-------AFNAALTVR-------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGF 280 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCc
Confidence 9999999999999999988 666555543 4567899999999999999999999999998863 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-----------PDTSSYNTLINSYSKIEKVEEALSLYGE 374 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----------p~~~~~~~li~~~~~~~~~~~a~~~~~~ 374 (531)
..++..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 888999999999999999999999998765311 1357889999999999999988776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-17 Score=152.12 Aligned_cols=373 Identities=13% Similarity=0.059 Sum_probs=171.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.++++++ .. ..+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...
T Consensus 16 ~~~ld~A~~fae~~----~~--~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERC----NE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhC----CC--hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34899999999998 22 349999999999999999999999763 5777999999999999999999998
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
++...+. .+++.+.+.++.+|.+.|+++++.++++ . |+..+|+.+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------G----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------C----C----------------CTTTHHHHHHHT--
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 8887764 4567889999999999999999888774 2 46679999999999999999999999977
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
..|..++.++.+.|++++|.. .+..+ .++.+|..++.+|...|+++.|......
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVe-------a~~KA------------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVD-------GARKA------------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHH-------HHHHH------------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred -------hhHHHHHHHHHHhccHHHHHH-------HHHHc------------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 369999999999999999888 66654 1578999999999999999999655443
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
+..++.-...++..|.+.|.+++|..+++...... ......|+-+..+|++- ++++..+.++..... +.
T Consensus 203 -----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~-in--- 271 (449)
T 1b89_A 203 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSR-VN--- 271 (449)
T ss_dssp -----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT-SC---
T ss_pred -----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH-hc---
Confidence 22344446678999999999999999999998765 44778888888888765 344444333322211 11
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-----------CCCcHHHHHHHHHHHH-
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-----------PEPNVVTYTVMICGLC- 452 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----------~~p~~~~~~~l~~~~~- 452 (531)
+...++.. . +...|..++..|..-++++.|....-+-...- -..+...|-..+.-|.
T Consensus 272 --i~k~~~~~---~------~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~ 340 (449)
T 1b89_A 272 --IPKVLRAA---E------QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 340 (449)
T ss_dssp --HHHHHHHH---H------TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred --CcHHHHHH---H------HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence 11111111 1 45689999999999999998876443322110 0123444433343333
Q ss_pred --------------HcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 453 --------------IEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 453 --------------~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
..=+...++++|++. +...-...++..+... .+..+-.++-+.|...++++.-+.-++.
T Consensus 341 ~~p~~l~~ll~~l~~~ld~~r~v~~~~~~----~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 341 FKPLLLNDLLMVLSPRLDHTRAVNYFSKV----KQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HCGGGHHHHHHHHGGGCCHHHHHHHHHHT----TCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCcHHHHHHHHHc----CCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333333333333221 3333334444444422 2445556677777777777776666654
Q ss_pred h
Q 038190 519 F 519 (531)
Q Consensus 519 ~ 519 (531)
.
T Consensus 414 ~ 414 (449)
T 1b89_A 414 Y 414 (449)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-14 Score=143.64 Aligned_cols=372 Identities=10% Similarity=0.011 Sum_probs=255.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HccCCHHHHHH----HHHHHHhC-CCCC-CHhhHHHHHHHHHc--
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGAL-AGKKYYVNFIC----LSERLNTI-GLLP-DFVSLNILMNCFCK-- 134 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~-- 134 (531)
..|+++.|..+|++++... |+...|...+... ...|+++.|.+ +|++.... |..| +...|...+....+
T Consensus 58 ~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~ 135 (530)
T 2ooe_A 58 KAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVE 135 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCC
Confidence 3569999999999998855 5777888877533 45677776665 77776543 5433 45678877776654
Q ss_pred -------cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH-------------HhcCChHHHHHHHHHHHHc--CCC---
Q 038190 135 -------MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL-------------CMQGKFTEASGLFTKFVAF--DCR--- 189 (531)
Q Consensus 135 -------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~~~--~~~--- 189 (531)
.|+++.|..+|++.++.........|....... ...+++..|..++.++... +..
T Consensus 136 ~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~ 215 (530)
T 2ooe_A 136 AVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA 215 (530)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred CcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 688999999999999831111123443322211 1234567777777663211 111
Q ss_pred CCCCCc--------HHhHHHHHHHHHhc----CCh----hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCC
Q 038190 190 PNVIPN--------VICYASIIDGLCKD----GFV----NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC-------AVN 246 (531)
Q Consensus 190 ~~~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~~~ 246 (531)
+...|+ ...|...+...... ++. +.+..+|++.... .+-+...|......+.+ .|+
T Consensus 216 ~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 216 PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp CCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 011122 34566655443332 222 3677889888764 23367778877777765 677
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGY 324 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~ 324 (531)
++.+....++|+.+++.....- .+.+...|..++..+.+.|++++|..+|+.+.+. .|+ ...|..++..+
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 366 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFA 366 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTT------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHH
Confidence 7633222334555888877532 2446788999999999999999999999999986 443 35888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC
Q 038190 325 CLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN-SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403 (531)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (531)
.+.|++++|..+|++..+.... +...|..... .+...|+.++|..+|+...+.. |+
T Consensus 367 ~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~-------------------- 423 (530)
T 2ooe_A 367 RRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GD-------------------- 423 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TT--------------------
T ss_pred HHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CC--------------------
Confidence 9999999999999999886322 2333332222 2346899999999999887642 32
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++..|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++++++.+.
T Consensus 424 -~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 424 -IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999853 2232 447888888888999999998888776554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-16 Score=147.05 Aligned_cols=267 Identities=12% Similarity=-0.031 Sum_probs=210.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+..+ .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44566777788888889999999998887764 44677888888888888999999999988887743 36678888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH--------------HH-HHHhcCChhHHHHHHHHHhhCCCCCC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI--------------ID-GLCKDGFVNKVRVLFLDMKGRGIYPD 230 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~ 230 (531)
.+...|++++|+..++++.... |. +...+..+ .. .+...|++++|...++++.+... .+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 171 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-ND 171 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TT---TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--Cc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CC
Confidence 8889999999999998888753 32 23333333 22 37778899999999999887532 26
Q ss_pred HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 038190 231 AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGI 310 (531)
Q Consensus 231 ~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 310 (531)
...+..+...+...|++++|.. .++...... +.+..++..+...+...|++++|...++++.+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~-------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAA-------NLRRAVELR-------PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhccHHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 7888888999999999888888 666655543 3457789999999999999999999999988763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 311 IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP-----------DTSSYNTLINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p-----------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 375 (531)
+.+..++..+...|...|++++|...|+++.+..... +...|..+..+|.+.|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3367889999999999999999999999988764332 4678889999999999999999988653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-15 Score=146.80 Aligned_cols=225 Identities=13% Similarity=-0.067 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 292 DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.+++++|.+++++..... +.+..++..+...|...|++++|...+++..+..+. +..++..+..+|...+....+...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHH
Confidence 345566666666655542 234555666666666777777777777666665332 344455554444321111000000
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcH--HHHHHHHH
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNV--VTYTVMIC 449 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~ 449 (531)
... ..........+.|...++.+.+... .+..++..+...|...|++++|...|++..+....+.. ..+..+..
T Consensus 304 ~~~---~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 304 NGM---YGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 000 0000001123444555555444332 25567889999999999999999999999885333221 12233332
Q ss_pred -HHHHcCCHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 450 -GLCIEGGIEKAYDLLPDMEEK-------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 450 -~~~~~g~~~~A~~~~~~~~~~-------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
.+...|++++|++.|++..+. .+....+..++++.+... +.+..+|..++.+|...|++++|++.+++...
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234689999999999988765 244455556666666544 34667899999999999999999999998665
Q ss_pred cc
Q 038190 522 RN 523 (531)
Q Consensus 522 ~~ 523 (531)
.+
T Consensus 459 ~~ 460 (472)
T 4g1t_A 459 SG 460 (472)
T ss_dssp --
T ss_pred cC
Confidence 43
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-16 Score=144.01 Aligned_cols=278 Identities=10% Similarity=-0.032 Sum_probs=196.6
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
..+..+...+...|++++|..+|+++.+..+. +..++..+..++...|++++|...|+++... .|. +..++..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l 95 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPK---DIAVHAAL 95 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcC---CHHHHHHH
Confidence 34556666666777777777777777665432 5556666667777777777777777776665 231 45566666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
...+...|++++|...|+++.+.... +...+..+.. ..|+....
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~ 139 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQ-----------------------------------ADVDIDDL 139 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhH-----------------------------------HHHHHHHH
Confidence 77777777777777777666654211 1111111100 00111111
Q ss_pred HHHHH--HHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 283 CSIIN--SLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 283 ~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
..+.. .+...|++++|..+++++.+.. +.+...+..+...|...|++++|...++++.+.... +...|..+...|.
T Consensus 140 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 217 (327)
T 3cv0_A 140 NVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLA 217 (327)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 12212 3778889999999999998764 337888999999999999999999999999887533 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC-
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP- 439 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 439 (531)
..|++++|...++++.+.. |+ +..++..+..+|...|++++|...++++.+.....
T Consensus 218 ~~~~~~~A~~~~~~a~~~~--~~---------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALDIN--PG---------------------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred HcCCHHHHHHHHHHHHHcC--CC---------------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 9999999999999987742 22 67889999999999999999999999998742221
Q ss_pred ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 440 ----------NVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 440 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...|..+..++...|++++|..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999998888643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-15 Score=151.31 Aligned_cols=351 Identities=12% Similarity=0.086 Sum_probs=207.7
Q ss_pred CCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 66 VELNDALCFFNYMIHMQP--TPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
|.+.+|+++++++.-.+. .-+....+.++.+..+. +..+..++.+++... ....+...+...|.+++|..
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHH
Confidence 366666666666653211 01234445555554444 445555554444311 12335555666677777777
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
+|++.. ......+.++. ..+++++|.++.+++. +..+|..+..++...|++++|++.|.+.
T Consensus 1071 IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn----------~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN----------EPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 776642 11122222222 5566777777666542 4556777777777777777777777553
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHH
Q 038190 224 GRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFL 303 (531)
Q Consensus 224 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 303 (531)
-|...|..++.++.+.|+++++.+ .+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIe-------yL~mArk~~--------~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVK-------YLQMARKKA--------RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhhc--------ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 256666667777777777777766 443333322 22223334666777777666433332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPD 383 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (531)
+ .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++..
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------- 1248 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------- 1248 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------
Confidence 1 234555566667777777777777777663 356777777777777777777776542
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 384 NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 384 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+++
T Consensus 1249 ---------------------n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1249 ---------------------STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred ---------------------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45666666677777777666666554322 2455566677777777777777777
Q ss_pred HHHHHHH-------------------HhhHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccCChhHHHh
Q 038190 464 LPDMEEK-------------------IRECLKAIELLHKMAKRYVKP------DEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 464 ~~~~~~~-------------------i~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
++..... -++..+++++|..-. .+++ +...|.-++..|.+.|++++|..
T Consensus 1303 lE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1303 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7665332 155556666665443 2222 45679999999999999999884
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=138.58 Aligned_cols=247 Identities=9% Similarity=0.028 Sum_probs=117.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDF--VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
..|++..|+..++..... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...|+.++|
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345555555544443322 1221 2333344455555555554443322 1 123344444444555555555555
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSA 256 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 256 (531)
++.++++...+..|+ +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|..
T Consensus 85 ~~~l~~ll~~~~~P~---~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~---- 151 (291)
T 3mkr_A 85 VAELDREMSRSVDVT---NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK---- 151 (291)
T ss_dssp HHHHHHHHHSCCCCS---CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH----
T ss_pred HHHHHHHHhcccCCC---CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH----
Confidence 555555544332232 334444444555555555555555544 2244444445555555555555554
Q ss_pred HHHHHHHHHhCCCCCCccccCCHhh---HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038190 257 ALELHEEFVNGNGELGVICHPDVLS---YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 333 (531)
.++.+.... |+... ....+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|
T Consensus 152 ---~l~~~~~~~--------p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 152 ---ELKKMQDQD--------EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp ---HHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HHHHHHhhC--------cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence 333333322 22110 011222233445666666666666554 234555666666666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 038190 334 RKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEE-ALSLYGEMIS 377 (531)
Q Consensus 334 ~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~ 377 (531)
...|+++.+..+. +..++..++..+...|+.++ +.++++++.+
T Consensus 220 ~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 220 EGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6666666555332 45556666666666666544 3455555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=153.38 Aligned_cols=220 Identities=11% Similarity=0.013 Sum_probs=62.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
+.|++++|.++++++ +++.+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 445566666666665 23346666666666666666666666432 345566666666666666666666
Q ss_pred HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
.++..++. . +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..
T Consensus 83 yl~~ark~--~----~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~------ 143 (449)
T 1b89_A 83 YLQMARKK--A----RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL------ 143 (449)
T ss_dssp --------------------------------CHHHHTTTTT-------CC----------------CTTTHHH------
T ss_pred HHHHHHHh--C----ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHH------
Confidence 55555442 1 244556666666666666666665553 2455566666666666666666666
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFV 338 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 338 (531)
.|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|.....
T Consensus 144 -~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 144 -LYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp -HHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred -HHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 55432 24666666666666666666666655 155666666666666666666644333
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMI 376 (531)
Q Consensus 339 ~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 376 (531)
.+. ..+.....++..|.+.|.+++|..+++...
T Consensus 202 ~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 202 HIV-----VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 211 233333445666666666666666666554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=168.29 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=120.3
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKS---RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
-..||+++|++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 355 LINSYSKIEKV-EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 355 li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
+|.++++.|+. ++|.++|++|.+.|+.| |..+|++++.++.+. ..++..+++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~P----------------------D~vtY~~ll~~~eR~----~vL~~Vrkv- 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKL----------------------QALFTAVLLSEEDRA----TVLKAVHKV- 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCS----------------------HHHHHHSCCCHHHHH----HHHHHHGGG-
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCC----------------------ChhhcccccChhhHH----HHHHHHHHh-
Confidence 99999999874 78889999998888766 889999888765554 333444444
Q ss_pred hCCCCCc------HHHHHHHHHHHHHcC
Q 038190 434 RYGPEPN------VVTYTVMICGLCIEG 455 (531)
Q Consensus 434 ~~g~~p~------~~~~~~l~~~~~~~g 455 (531)
..++.|+ ..+...|.+.|.+.+
T Consensus 259 ~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred CcccCCCCCCcccccchHHHHHHHccCC
Confidence 2334443 445555666666655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=166.40 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 348 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
-..+|+++|.+|++.|++++|.++|++|.+.+ ..|+.||..+||+||.+||+.|++++|.+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-------------------~kG~~PdvvTYNtLI~Glck~G~~~eA~~ 186 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-------------------QKRKLLTLDMYNAVMLGWARQGAFKELVY 186 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-------------------HHHTTCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-------------------hcCCCCCHhHHHHHHHHHHhCCCHHHHHH
Confidence 45689999999999999999999999886531 22345699999999999999999999999
Q ss_pred HHHHhhhCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 038190 428 LFKKLPRYGPEPNVVTYTVMICGLCIEGGI-EKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD 506 (531)
Q Consensus 428 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 506 (531)
+|++|.+.|+.||..||+++|.++++.|+. ++|.++|++|. +.|+.||..+|++++....+.
T Consensus 187 Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~-----------------~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-----------------QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----------------HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-----------------HcCCCCChhhcccccChhhHH
Confidence 999999999999999999999999999974 66766665554 459999999999998877776
Q ss_pred CChhHHHhhH
Q 038190 507 ENCHECMNLL 516 (531)
Q Consensus 507 g~~~~a~~~~ 516 (531)
+-++.+.++.
T Consensus 250 ~vL~~Vrkv~ 259 (1134)
T 3spa_A 250 TVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHGGGC
T ss_pred HHHHHHHHhC
Confidence 6555555443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=137.69 Aligned_cols=271 Identities=10% Similarity=0.048 Sum_probs=208.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++..|+..++......|.........+.++|...|+++.|+..++. . -+|+..++..+...+...++.+.|...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 468999999998875543332234667778999999999999987754 2 366778889999999999999999999
Q ss_pred HHHHHHCCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 145 LGRILRKVFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 145 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
++++...+..| +...+..+..++...|++++|++.+++ | .+..++..++..+.+.|++++|...|+++.
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------G---DSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999876444 556777788999999999999999987 2 378899999999999999999999999998
Q ss_pred hCCCCCCHhhH---HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHH
Q 038190 224 GRGIYPDAFVY---NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKE 300 (531)
Q Consensus 224 ~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 300 (531)
+.. |+.... ..++..+...|++++|.. +|+++.... +.+...++.+..++.+.|++++|..
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~-------~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYY-------IFQEMADKC-------SPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHH-------HHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 763 443211 122333444466676666 887777764 4678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038190 301 LFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD-ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSL 371 (531)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 371 (531)
.|++..+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.....+.+.++++..-
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 999988864 3478889999999999999875 678999998874 33322 23344555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-14 Score=141.70 Aligned_cols=312 Identities=11% Similarity=-0.085 Sum_probs=214.9
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----C---CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCC----
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTI-----G---LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKV---- 152 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---- 152 (531)
.....||.|...+...|++++|++.|++..+. + -+....+|..+..+|...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34568999999999999999999999987542 1 12235688999999999999999999999887531
Q ss_pred -C-C-CChhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH---HHhcCChhHHHHHHHHHhh
Q 038190 153 -F-S-PDVVTLGCLIRGLCMQ--GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG---LCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 153 -~-~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~ 224 (531)
. . ....++..+..++... +++++|+..|++.... .|+ +...+..+..+ +...++.++|++.|++..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~---~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPK---NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1 1 1234666666566554 4689999999999886 443 55666655555 3456788899999988876
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
... .+...+..+...+...+... +.+++|.+.++...... +.+..++..+...|...|++++|...+++
T Consensus 204 l~p-~~~~~~~~l~~~~~~~~~~~---~~~~~a~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 204 LNP-DNQYLKVLLALKLHKMREEG---EEEGEGEKLVEEALEKA-------PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HCS-SCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCC-cchHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 532 24555655555555443321 22334444777666654 45677888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLM-------------------GRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV 365 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~ 365 (531)
..+.. +-+..++..+...|... +.++.|...+++..+.... +...+..+...|...|++
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccH
Confidence 98763 23566666666555332 2356788888887776543 566788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCChHHHHHHHHHhhh
Q 038190 366 EEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVD-GLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 434 (531)
++|...|++..+....+. . ....+..+.. .+...|++++|+..|++..+
T Consensus 351 ~~A~~~~~kaL~~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPV-----A---------------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHHHSCCCHH-----H---------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCh-----H---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999887543221 0 0012222222 23467888888888887776
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-13 Score=136.40 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=225.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGL--LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
--...+++|...|.+.+|++++++..-.+- .-+....+.++.+..+. +..+..++.+...+. ....+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 345566777788888888888888773321 12334555566666655 445555555544321 13346677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN 246 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 246 (531)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1059 ai~lglyEEAf~IYkKa~~---------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV---------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC---------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 7778888888888887531 2223333332 6677888888877552 46677788888888888
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL 326 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 326 (531)
+++|.. .|... -|...|..++.+|.+.|++++|.++|....+.. ++....+.++.+|++
T Consensus 1121 ~kEAId-------sYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1121 VKEAID-------SYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHH-------HHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 877777 44321 245667778888888888888888887766653 333334457778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 327 MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 327 ~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.+++++...+ .+ .++...|..+...|...|++++|..+|...
T Consensus 1180 l~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------------------------------- 1221 (1630)
T 1xi4_A 1180 TNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------------------------- 1221 (1630)
T ss_pred hcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------------------------
Confidence 8877754333 22 245666777888888888888888888663
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------Hhh
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-------------IRE 473 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------i~~ 473 (531)
..|..++.+|++.|++++|.+.+++.. +..+|..+..+|...|++..|......+... .|.
T Consensus 1222 ~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~ 1295 (1630)
T 1xi4_A 1222 SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGY 1295 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCC
Confidence 278999999999999999999999874 6689999999999999999887766433111 388
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--CChhHHHhhH
Q 038190 474 CLKAIELLHKMAKRYVKPDEITVSILEELLNKD--ENCHECMNLL 516 (531)
Q Consensus 474 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 516 (531)
+++|+.+++..+... +-....|.-+..+|.+. ++..++.+++
T Consensus 1296 feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1296 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998887433 22234566666666654 3344444433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-14 Score=123.04 Aligned_cols=200 Identities=13% Similarity=-0.049 Sum_probs=158.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4566788889999999999999999999998874 346888999999999999999999999999987644 67788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHH
Q 038190 356 INSYSKI-----------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRS 424 (531)
Q Consensus 356 i~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 424 (531)
...|... |++++|+..|++..+. .|+ +...+..+..+|...|++++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~---------------------~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR---------------------YAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc---------------------cHHHHHHHHHHHHHcCChHH
Confidence 9999999 9999999999988774 333 78899999999999999999
Q ss_pred HHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038190 425 AWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLN 504 (531)
Q Consensus 425 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 504 (531)
|...|++..+.. .++..+..+..+|...|++++|+..|++..+. . +.+...+..+..++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------------~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----------------A-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------S-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------C-CCChHHHHHHHHHHH
Confidence 999999999876 68889999999999999999998888765543 2 335678889999999
Q ss_pred ccCChhHHHhhHHHhh
Q 038190 505 KDENCHECMNLLPSFL 520 (531)
Q Consensus 505 ~~g~~~~a~~~~~~~~ 520 (531)
+.|++++|.+.+++..
T Consensus 197 ~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 197 LKGKAEEAARAAALEH 212 (217)
T ss_dssp C---------------
T ss_pred HccCHHHHHHHHHHHh
Confidence 9999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-14 Score=135.58 Aligned_cols=336 Identities=11% Similarity=-0.039 Sum_probs=180.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-----
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY---VNFICLSERLNTIGLLPDFVSLNILMNCFCKMI----- 136 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----- 136 (531)
.|++++|.++|+...+.| +..++..|...|...|+. ++|+..|++..+. ++..+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCc
Confidence 347777777777776654 334455555556666666 7777777777643 4555666666444443
Q ss_pred CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 137 GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTE---ASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
++++|..+|++..+.|. ...+..|...|...+..+. +.+.+......| +...+..|...|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-------~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-------YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-------CTTHHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCcc
Confidence 56677777777777652 2366667777766665433 333444433322 3445666677777766555
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV---NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
++......+...-...+...+..+...|...| +.++|.. .|+.....+ .++...+..+...|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~-------~~~~aa~~g-------~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLK-------QMEAGVSRG-------TVTAQRVDSVARVLG 224 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHTT-------CSCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHH-------HHHHHHHCC-------CHHHHHHHHHHHHHh
Confidence 44444333222111113335666666666655 3333333 777777766 344444455666665
Q ss_pred cC----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 038190 291 KD----VLVDKAKELFLDMKSRGIIPDVVVYSSLIDG-Y--CLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE 363 (531)
Q Consensus 291 ~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~ 363 (531)
.. +++++|..+|++.. .| +...+..|... | ...+++++|...|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 44 57777777777766 32 44455555554 3 34677777777777777665 5556666666665 34
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhh
Q 038190 364 -----KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPR 434 (531)
Q Consensus 364 -----~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 434 (531)
++++|+.+|++.. .| ++..+..|...|.. ..++++|..+|++..+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g-------------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR-------------------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT-------------------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHh-CC-------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 6666666666554 22 66777777777766 3478888888888877
Q ss_pred CCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 038190 435 YGPEPNVVTYTVMICGLCI----EGGIEKAYDLLPDME 468 (531)
Q Consensus 435 ~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 468 (531)
.| +......|...|.. ..++.+|...|+...
T Consensus 351 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 351 NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 55 33444555555543 345666655555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-14 Score=122.73 Aligned_cols=200 Identities=12% Similarity=-0.054 Sum_probs=155.6
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++++..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 366788888889999999999999999998875 557788899999999999999999999999987643 677888899
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhh
Q 038190 165 RGLCMQ-----------GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFV 233 (531)
Q Consensus 165 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 233 (531)
.++... |++++|+..|++.... .|+ +..+|..+..++...|++++|+..|++..+.. .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 153 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPR---YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEI 153 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--Ccc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHH
Confidence 999999 9999999999999886 453 67889999999999999999999999998876 57888
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+..+..++...|++++|.. .|+...... +.+...+..+...+...|++++|...|++...
T Consensus 154 ~~~la~~~~~~g~~~~A~~-------~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALA-------QYAKALEQA-------PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHH-------HHHHHHHHS-------TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8889999999999999888 555555443 34677888889999999999999998887643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.8e-14 Score=134.36 Aligned_cols=141 Identities=16% Similarity=-0.001 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLM----GRIDDARKLFVSIESEGCIPDTSSYNTLINS-Y--SKIEKVE 366 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~-~--~~~~~~~ 366 (531)
+.++|...|+...+.|. ++...+..+...|... +++++|...|++.. .| +...+..+... | ...++++
T Consensus 194 ~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHH
T ss_pred cHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHH
Confidence 45555555555555442 2333333344444332 45555555555554 22 33333344333 2 2345555
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHhhhCCCCCcH
Q 038190 367 EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-----RLRSAWELFKKLPRYGPEPNV 441 (531)
Q Consensus 367 ~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~g~~p~~ 441 (531)
+|+.+|++..+.| +...+..|...|. .| ++++|..+|++.. .| ++
T Consensus 269 ~A~~~~~~Aa~~g-------------------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~ 318 (452)
T 3e4b_A 269 QMMKYLDNGRAAD-------------------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EV 318 (452)
T ss_dssp HHHHHHHHHHHTT-------------------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CH
T ss_pred HHHHHHHHHHHCC-------------------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CH
Confidence 5555555555433 3444444554444 22 5555555555554 21 33
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 038190 442 VTYTVMICGLCI----EGGIEKAYDLLPDMEE 469 (531)
Q Consensus 442 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 469 (531)
..+..|...|.. ..++++|++.|++..+
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 444444444433 2255555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-13 Score=128.00 Aligned_cols=254 Identities=8% Similarity=-0.009 Sum_probs=203.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-cchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-VSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
..+|+.+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++++..+. +..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4578888889999999999999999999875 5567889999999999996 99999999999998644 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-c
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC-A 244 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~ 244 (531)
++...|++++|+..|++++.. .|+ +..+|..+..++...|++++|+..|+++.+.... +...|+.+..++.. .
T Consensus 175 ~~~~~g~~~eAl~~~~kal~l--dP~---~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQ--DAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHh--Ccc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 999999999999999999987 553 7889999999999999999999999999986443 67888888888888 5
Q ss_pred CChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038190 245 VNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV--LVDKAKELFLDMKSRGIIPDVVVYSSLID 322 (531)
Q Consensus 245 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 322 (531)
|..++|. .+.+++.++...... +-+...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..
T Consensus 249 ~~~~eA~--~~~el~~~~~Al~l~-------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~ 317 (382)
T 2h6f_A 249 GYNDRAV--LEREVQYTLEMIKLV-------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVD 317 (382)
T ss_dssp CSCSHHH--HHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHH
T ss_pred CcchHHH--HHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHH
Confidence 5546663 222334666666544 346778888888898888 689999999888 33 3446788889999
Q ss_pred HHHhcC---------CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Q 038190 323 GYCLMG---------RIDDARKLFVSI-ESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 323 ~~~~~g---------~~~~a~~~~~~~-~~~g~~p~~~~~~~li~~~~ 360 (531)
+|.+.| ..++|.++|+++ .+.... ....|..+...+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 998874 358999999998 665321 3445555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-13 Score=120.48 Aligned_cols=231 Identities=14% Similarity=-0.004 Sum_probs=175.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 196 VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 196 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
...|..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+.+++++...... . .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~------~ 75 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRA-D------Y 75 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-C------H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccccc-c------h
Confidence 3456666667777777777777777766654 45666667777777777777777644444443221100 0 0
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.....++..+...+...|++++|...|+++.+. .|+. ..+...|++++|...++.+...... +...+..+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 145 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHH
Confidence 011567888999999999999999999999885 3443 3466778999999999999886432 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
...+...|++++|...|++..+.. | .+..++..+..+|...|++++|...|+++.+.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~--~---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA--P---------------------EDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--c---------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999988743 2 26789999999999999999999999999885
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
. +.+...|..+..++...|++++|++.|++..+
T Consensus 203 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 D-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 33578899999999999999999998876554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=123.30 Aligned_cols=226 Identities=12% Similarity=-0.017 Sum_probs=149.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--C----hhhH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP--D----VVTL 160 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~ 160 (531)
...|..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|...++++.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3466777777778888888888888887766 667777777788888888888888887777653221 1 4677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 038190 161 GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRV 240 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 240 (531)
..+..++...|++++|+..|++.... .| +. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~----~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HR----TA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CC----CH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cc----hh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 77777777888888888888777764 22 21 23455566777777777776642 1134455666666
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (531)
+...|++++|.. .++...... +.+..++..+..++...|++++|...++...+.. +.+...+..+
T Consensus 149 ~~~~~~~~~A~~-------~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 213 (258)
T 3uq3_A 149 YFTKSDWPNAVK-------AYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 213 (258)
T ss_dssp HHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHhcCHHHHHH-------HHHHHHhcC-------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 666666666666 444444432 2345666667777777777777777777766653 2245666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 038190 321 IDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...|...|++++|...|++..+.
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 67777777777777777766554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-11 Score=120.71 Aligned_cols=444 Identities=12% Similarity=0.027 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---cchHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG---VSDAFVA 144 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~ 144 (531)
..+.+..|++.+..+|. |..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 45566677888887776 9999999999999999999999999999887 36677889999988888888 9999999
Q ss_pred HHHHHHCCC-CCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHHc-CC-CCCCCCcHHhHHHHHHHHHh-----
Q 038190 145 LGRILRKVF-SPDVVTLGCLIRGLCMQGKF--------TEASGLFTKFVAF-DC-RPNVIPNVICYASIIDGLCK----- 208 (531)
Q Consensus 145 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~~----- 208 (531)
|++.+...+ +|++..|...+....+.++. +.+.++|+..... |. .+ .+...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~---~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP---KSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS---SCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc---cchHHHHHHHHHHHhccccC
Confidence 999998742 37888999888766665553 3345788876653 44 44 245688888876543
Q ss_pred ----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC------hhhhhcchHHHHHHHHHHHhCCCCCCcc----
Q 038190 209 ----DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVN------WEDAKGNTSAALELHEEFVNGNGELGVI---- 274 (531)
Q Consensus 209 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~------~~~a~~~~~~a~~~~~~~~~~~~~~~~~---- 274 (531)
.++++.+..+|+.........-..+|......-...+. ..+....|..|...+..+..........
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 34577899999998864222122333322211111111 1111123444455555443222111000
Q ss_pred --------ccC-C------HhhHHHHHHHHhcCC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 275 --------CHP-D------VLSYCSIINSLCKDV-------LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 275 --------~~~-~------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
+++ + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|+.++
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~ 361 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDST 361 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTT
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHH
Confidence 010 1 134555554333332 134456778887765 34477888888888888899999
Q ss_pred HH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCCcccHHHHHHHHHHHHhCCC
Q 038190 333 AR-KLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGV---------RPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 333 a~-~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
|. .+|++..... +.+...|-..+....+.|+++.|.++|+.+..... .|+.. .. .+.+..
T Consensus 362 a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~---~~---~~~~~~--- 431 (679)
T 4e6h_A 362 VITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE---SA---INQLKS--- 431 (679)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH---HH---HHHHHH---
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch---hh---hhhhcc---
Confidence 96 9999998753 23566677888888999999999999999876310 01000 00 000000
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----------
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE-GGIEKAYDLLPDMEEK----------- 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----------- 470 (531)
-...+|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|.++|+...+.
T Consensus 432 -~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y 510 (679)
T 4e6h_A 432 -KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKY 510 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 023467777777778888888888888887640011233333333223333 4478888888887776
Q ss_pred ------HhhHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhh
Q 038190 471 ------IRECLKAIELLHKMAKRYVKP--DEITVSILEELLNKDENCHECMNLLPSFLSRNQEESK 528 (531)
Q Consensus 471 ------i~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 528 (531)
+++.+.|+.+|+..+.....+ ....|..+++.-.+.|+.+.+..+.+++....+..++
T Consensus 511 ~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 511 LDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 277888888998888654322 3467888888888999999999999999887766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-13 Score=120.43 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIR 165 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 165 (531)
..+......+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+....++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566677778888888888888887764 34555777777888888888888888888877432222 223777788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
++...|++++|+..|++.... .|. +..+|..+...|...|++++|...|++..+.. +.+...+..+...+...+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHhc--Ccc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 888888888888888888775 332 56678888888888888888888888877652 224555555552333344
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC---HHHHHHHHHHHHhCC-CCCC------HH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL---VDKAKELFLDMKSRG-IIPD------VV 315 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~ 315 (531)
++++|.. .|+...... +.+...+..+..++...|+ +++|...+++..+.. -.|+ ..
T Consensus 157 ~~~~A~~-------~~~~a~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 157 EYVKADS-------SFVKVLELK-------PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp CHHHHHH-------HHHHHHHHS-------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHH-------HHHHHHHhC-------ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 5555555 555555543 2335566666777766666 666777777665531 1122 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+|..+...|...|++++|...|++..+..+. +...+..
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~ 260 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHH
Confidence 5666777777888888888888887776432 3444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-12 Score=114.23 Aligned_cols=222 Identities=12% Similarity=-0.025 Sum_probs=134.0
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGE 270 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~ 270 (531)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.. .|+.....+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~-------~~~~a~~~~-- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAAS-------FYAKACDLN-- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHH-------HHHHHHHCC--
Confidence 34445555555555555555555555555421 33444444455554 444444444 444433322
Q ss_pred CCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 038190 271 LGVICHPDVLSYCSIINSLCK----DVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIES 342 (531)
Q Consensus 271 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 342 (531)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 73 -------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 73 -------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp -------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 34455556666666 677777777777766653 55666666666766 6777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 038190 343 EGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK 418 (531)
Q Consensus 343 ~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 418 (531)
.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-------------------------DSPGCFNAGNMYHH 194 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHH
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-------------------------CHHHHHHHHHHHHc
Confidence 54 45556666666666 667777777776666543 45566667777777
Q ss_pred ----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 038190 419 ----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI----EGGIEKAYDLLPDMEE 469 (531)
Q Consensus 419 ----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 469 (531)
.+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 777777777777777643 25556666666666 6777777666665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-14 Score=125.17 Aligned_cols=153 Identities=8% Similarity=-0.150 Sum_probs=99.7
Q ss_pred CcCCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcch
Q 038190 64 GEVELNDALCFFNYMIHMQPT---PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD 140 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 140 (531)
..|++++|+..|+.+.+..+. .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346888888888888775322 135567777777888888888888888877664 4456677777777777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHH
Q 038190 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFL 220 (531)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 220 (531)
|...|+++++..+. +..++..+..+|...|++++|...|+++... .| +.......+..+...|++++|...++
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~----~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DP----NDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----TCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC----CChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777777765422 4566677777777777777777777777664 22 22222233333444566666666665
Q ss_pred HHhh
Q 038190 221 DMKG 224 (531)
Q Consensus 221 ~m~~ 224 (531)
+...
T Consensus 169 ~~~~ 172 (275)
T 1xnf_A 169 QHFE 172 (275)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-12 Score=112.75 Aligned_cols=224 Identities=16% Similarity=0.025 Sum_probs=158.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK----DGFVNKVRVLFLDMKGRGIYPDA 231 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~ 231 (531)
+..++..+...+...|++++|+..|++.... + +..++..+...|.. .+++++|...|++..+.+ +.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 74 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 74 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CH
Confidence 3445556666666677777777777766652 1 44566666666666 777777777777766654 55
Q ss_pred hhHHHHHHHHHh----cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhc----CCCHHHHHHHHH
Q 038190 232 FVYNSLIRVYCC----AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCK----DVLVDKAKELFL 303 (531)
Q Consensus 232 ~~~~~li~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~ 303 (531)
..+..+...|.. .+++++|.. .|+.....+ +..++..+...|.. .+++++|...|+
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~-------~~~~a~~~~---------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQ-------YYSKACDLK---------YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHH-------HHHHHHHTT---------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHH-------HHHHHHHcC---------CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 556666666666 666665555 555444433 45566777777777 788888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 038190 304 DMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEM 375 (531)
Q Consensus 304 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~ 375 (531)
+..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++.
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 888765 56667777777777 788888888888888764 56677778888888 88888888888887
Q ss_pred HhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCC
Q 038190 376 ISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 376 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 436 (531)
.+.+ +...+..+...|.. .+++++|...|++..+.|
T Consensus 213 ~~~~-------------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 213 CELE-------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTT-------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HhCC-------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7653 45677788888888 888999999998888754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=121.05 Aligned_cols=241 Identities=10% Similarity=-0.092 Sum_probs=186.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHccCCcchHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--FVSLNILMNCFCKMIGVSDAF 142 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~ 142 (531)
.|++++|+..|+.+.+..|. +..+|..+...+...|++++|+..++++.+.+..++ ..+|..+...+...|++++|.
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 46999999999999997765 666899999999999999999999999998431222 224889999999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..|+++.+..+. +..++..+..+|...|++++|+..|++.... .|. +..+|..+...+...+++++|...|++.
T Consensus 95 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 95 QQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT---DPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987543 6679999999999999999999999999875 442 6778888883444456999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCC---hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHH
Q 038190 223 KGRGIYPDAFVYNSLIRVYCCAVN---WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299 (531)
Q Consensus 223 ~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 299 (531)
.+... .+...+..+...+...++ +++|...+++++++........ ...-..+|..+...|...|++++|.
T Consensus 169 ~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 169 LELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------KDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc------hHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 87532 246777778888888888 7888886666666543211100 0001357888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHH
Q 038190 300 ELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l 320 (531)
+.|++..+.. +-+......+
T Consensus 242 ~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 242 AAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhcC-ccHHHHHHHh
Confidence 9999998863 2244444333
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=124.67 Aligned_cols=249 Identities=11% Similarity=-0.012 Sum_probs=192.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 97 LAGKKYYVNFICLSERLNTIGLL---PDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
+...|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++++..+. +..++..+..+|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 34568999999999999986421 24568889999999999999999999999987543 688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGN 253 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 253 (531)
++|+..|++.... .|. +..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|..
T Consensus 94 ~~A~~~~~~al~~--~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~- 165 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE- 165 (275)
T ss_dssp HHHHHHHHHHHHH--CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH-
T ss_pred HHHHHHHHHHHhc--Ccc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH-
Confidence 9999999999986 442 6788999999999999999999999999875 3444444445555566677777776
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP---DVVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~ 330 (531)
.+....... +++...+ .++..+...++.++|...++...+..... +..++..+...|...|++
T Consensus 166 ------~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 166 ------VLKQHFEKS-------DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp ------HHHHHHHHS-------CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHhcC-------CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 776665543 2333344 47788888999999999999987653211 257788899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038190 331 DDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLY 372 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 372 (531)
++|...|++..+.. |+. +.....++...|++++|++.+
T Consensus 232 ~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999874 322 334456777888999988776
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-12 Score=111.89 Aligned_cols=208 Identities=8% Similarity=-0.064 Sum_probs=173.0
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 456678889999999999999999999988763 346788999999999999999999999999887543 678889999
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 357 NSYSKI-EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 357 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..|... |++++|...++++.+.+..|. +...+..+..++...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPT---------------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSC---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcc---------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999 999999999999987322232 5778999999999999999999999999875
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhh
Q 038190 436 GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 436 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
. +.+...+..+..++...|++++|.+.++++.+. ....+...+..+...+...|+.++|..+
T Consensus 143 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 143 Q-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR-----------------VEVLQADDLLLGWKIAKALGNAQAAYEY 204 (225)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------HCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3 235788889999999999999998888765442 2214667788888889999999999999
Q ss_pred HHHhhhcchh
Q 038190 516 LPSFLSRNQE 525 (531)
Q Consensus 516 ~~~~~~~~~~ 525 (531)
++.+...++.
T Consensus 205 ~~~~~~~~p~ 214 (225)
T 2vq2_A 205 EAQLQANFPY 214 (225)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9998765543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=132.03 Aligned_cols=312 Identities=13% Similarity=0.036 Sum_probs=206.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc--HHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN--VICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP 229 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p 229 (531)
....+......+...|++++|+..|++.... .|.. +. ..+|..+...+...|++++|...|++.... +-.|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--Cccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3444555566666777777777777776665 2210 11 245666667777777777777777665332 1111
Q ss_pred -CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC--------------
Q 038190 230 -DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL-------------- 294 (531)
Q Consensus 230 -~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-------------- 294 (531)
...++..+...+...|++++|...+++++++...... ......++..+...+...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--------ccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 2345666667777778888887777776666655421 11224567778888888888
Q ss_pred ------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHH
Q 038190 295 ------VDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINS 358 (531)
Q Consensus 295 ------~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~ 358 (531)
+++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++..+...
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999888876542 1111 2456788888999999999999999987653111 12 2378888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC--
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY-- 435 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 435 (531)
|...|++++|...+++..+... +.+.. ....++..+...|...|++++|...+++..+.
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLAR------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHH------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 9999999999999988764210 00000 02557889999999999999999999988752
Q ss_pred --CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCh
Q 038190 436 --GPEP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP-DEITVSILEELLNKDENC 509 (531)
Q Consensus 436 --g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 509 (531)
+-.+ ...++..+..+|...|++++|++.+++..+ +.... +..+ ...++..+..++...|+.
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------~~~~~---~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE----------ISREV---GDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------HHHHT---TCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------HHHHh---cCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 155778889999999999999999876543 22222 2222 234566677777777765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-12 Score=122.08 Aligned_cols=248 Identities=12% Similarity=-0.015 Sum_probs=151.6
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
..+|..+..++.+.|++++|+..++++++..+. +..+|+.+..++...|+ +++|+..|++.+.. .|+ +..+|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---~~~a~~ 170 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---NYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC---CHHHHH
Confidence 345666666666667777777777777666433 55666667777777775 77777777777665 332 566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
.+..++...|++++|+..|+++.+.... +...|..+..+
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~---------------------------------------- 209 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWV---------------------------------------- 209 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH----------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHH----------------------------------------
Confidence 6666666666666666666666553211 34444444444
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDA-----RKLFVSIESEGCIPDTSSYNT 354 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~g~~p~~~~~~~ 354 (531)
+...|++++|+..|+++.+... -+...|+.+..++.. .|..++| ...|++.+..... +...|..
T Consensus 210 --------~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~ 279 (382)
T 2h6f_A 210 --------IQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNY 279 (382)
T ss_dssp --------HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred --------HHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 4444455555555555444321 134445555555554 3333444 4667776665433 5667777
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---------ChH
Q 038190 355 LINSYSKIE--KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW---------RLR 423 (531)
Q Consensus 355 li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~ 423 (531)
+...+...| ++++|++.+.++ + ..|+ +...+..++.+|.+.| .++
T Consensus 280 l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~---------------------~~~al~~La~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 280 LKGILQDRGLSKYPNLLNQLLDL-Q--PSHS---------------------SPYLIAFLVDIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp HHHHHTTTCGGGCHHHHHHHHHH-T--TTCC---------------------CHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHccCccchHHHHHHHHHh-c--cCCC---------------------CHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 777777777 578888877776 2 3333 6788888888888864 258
Q ss_pred HHHHHHHHh-hhCCCCCc-HHHHHHHHHHHH
Q 038190 424 SAWELFKKL-PRYGPEPN-VVTYTVMICGLC 452 (531)
Q Consensus 424 ~A~~~~~~~-~~~g~~p~-~~~~~~l~~~~~ 452 (531)
+|.++|+++ .+. .|. ...|..+...+.
T Consensus 336 ~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 336 KALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 999999998 653 454 445665555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=9.9e-13 Score=116.68 Aligned_cols=132 Identities=10% Similarity=-0.098 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.... +..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 445555555666666666666666665543 334445555555555555555555555555554321 344555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
...|++++|+..|+++...+..| .+...+..+...+...|++++|...|++..+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYP---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCT---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555554411122 1344455555555555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-12 Score=113.15 Aligned_cols=202 Identities=14% Similarity=-0.018 Sum_probs=162.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+...|++++|...|+++.+... .+..++..+..+|...|++++|+..|+++... .|. +..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~---~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSR---NARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC---cHHHHHH
Confidence 45677888888899999999999999988753 36778888999999999999999999998876 332 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
+...+...|++++|..+|+++...+..| +...+..+...+...|++++|.. .++...... +.+..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-------~~~~~~~~~-------~~~~~ 176 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-------YFEKSLRLN-------RNQPS 176 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------SCCHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC-------cccHH
Confidence 9999999999999999999988743344 45667778888888888888888 555555543 33567
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78888888889999999999998887753 3466777888888888899999999998888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-13 Score=130.09 Aligned_cols=280 Identities=14% Similarity=0.051 Sum_probs=202.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHccCCcchHHHHHHHHHHC----C-CCCChhh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----VSLNILMNCFCKMIGVSDAFVALGRILRK----V-FSPDVVT 159 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 159 (531)
.+..+...+...|++++|+..|+++.+.+ +.+. .++..+..++...|++++|...++++++. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667778888888888888887764 2233 46777788888888888888888877653 1 1223457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF-----------------VNKVRVLFLD 221 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 221 (531)
+..+...|...|++++|+..|++........+ ......++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77888888899999999988888765411100 00134578888888999999 8888888877
Q ss_pred HhhC----CCC-CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 222 MKGR----GIY-PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 222 m~~~----g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
..+. +.. ....++..+...+...|++++|...+++++++...... ......++..+...|...|+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD--------RAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHHHHCcCHH
Confidence 6542 111 12346777888899999999999988887777665321 1122447888999999999999
Q ss_pred HHHHHHHHHHhCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHH
Q 038190 297 KAKELFLDMKSRGI--I---PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-----PDTSSYNTLINSYSKIEKVE 366 (531)
Q Consensus 297 ~a~~~~~~~~~~~~--~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-----p~~~~~~~li~~~~~~~~~~ 366 (531)
+|...+++..+... . ....++..+...|...|++++|...+++..+.... ....++..+...|...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 99999988765411 0 12467788888999999999999999987653110 12347778889999999999
Q ss_pred HHHHHHHHHHh
Q 038190 367 EALSLYGEMIS 377 (531)
Q Consensus 367 ~a~~~~~~~~~ 377 (531)
+|...|++..+
T Consensus 361 ~A~~~~~~al~ 371 (411)
T 4a1s_A 361 RALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=112.46 Aligned_cols=160 Identities=13% Similarity=-0.049 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+..+ .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455556666666666666666666665543 33455555555666666666666666666555432 244455555555
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 167 LCMQ-GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 167 ~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+... |++++|+..++++......| .+..++..+...+...|++++|...|+++.+... .+...+..+...+...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYP---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCS---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 5666 66666666665555411111 1344555555555555555555555555544311 12334444444444444
Q ss_pred Chhhhhc
Q 038190 246 NWEDAKG 252 (531)
Q Consensus 246 ~~~~a~~ 252 (531)
++++|..
T Consensus 162 ~~~~A~~ 168 (225)
T 2vq2_A 162 QLGDADY 168 (225)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 4444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-13 Score=129.82 Aligned_cols=284 Identities=14% Similarity=0.052 Sum_probs=210.7
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHC----CCC-C
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRK----VFS-P 155 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~ 155 (531)
.....+......+...|++++|+..|+++.+.+ +.+ ..++..+...+...|+++.|...++++... +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 355566777788889999999999999998774 333 356778888899999999999999887653 111 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC--------------------hhH
Q 038190 156 DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF--------------------VNK 214 (531)
Q Consensus 156 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~ 214 (531)
...++..+...|...|++++|+..+++......... ......++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245778888999999999999999988775421110 00124478888899999999 999
Q ss_pred HHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 215 VRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 215 a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
|...+++.... +..+ ...++..+...+...|++++|...+++++++...... ......++..+...+
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------KAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC--------cHHHHHHHHHHHHHH
Confidence 99998876532 2111 2346777888899999999999988887777655211 112244788899999
Q ss_pred hcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINSY 359 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~ 359 (531)
...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 9999999999999987653 1111 1557788889999999999999999987653111 11 45778888999
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 038190 360 SKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~ 377 (531)
...|++++|...+++..+
T Consensus 318 ~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=130.61 Aligned_cols=286 Identities=11% Similarity=0.044 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDV----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVI 197 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 197 (531)
..+..+...+...|++++|...|+++++.... +. .++..+...|...|++++|+..|++....... .+......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34555667888999999999999999987533 33 47888999999999999999999988754111 10112456
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhhhcchH
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGR----G-IYPDAFVYNSLIRVYCCAVN-----------------WEDAKGNTS 255 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~ 255 (531)
++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7889999999999999999999887653 1 11134567778888999999 666666555
Q ss_pred HHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCH
Q 038190 256 AALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRI 330 (531)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~ 330 (531)
+++++...... ......++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++
T Consensus 208 ~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (411)
T 4a1s_A 208 ENLKLMRDLGD--------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279 (411)
T ss_dssp HHHHHHHHHTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHcCC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCH
Confidence 55555544321 1223457888888999999999999999887654110 11 23677788888889999
Q ss_pred HHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCC
Q 038190 331 DDARKLFVSIESEGCI-----PDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELD 405 (531)
Q Consensus 331 ~~a~~~~~~~~~~g~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (531)
++|...+++..+.... ....++..+...|...|++++|...+++..+.. .... .....
T Consensus 280 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~--~~~~~ 342 (411)
T 4a1s_A 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELG--DRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT--CHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCC--ChHHH
Confidence 9999888887653111 014566777778888888888888877765410 0000 00002
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..++..+..+|...|++++|..+|++..+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33555666666666666666666666655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=115.20 Aligned_cols=206 Identities=14% Similarity=0.093 Sum_probs=156.8
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.....|..+...+...|++++|..+|+++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 455678888889999999999999999998863 346888899999999999999999999999887543 678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 436 (531)
..|...|++++|...++++.+.. | .+...+..+...+...|++++|..+++++.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--M---------------------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--C---------------------CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--C---------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999988743 2 267889999999999999999999999998752
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhH
Q 038190 437 PEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLL 516 (531)
Q Consensus 437 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 516 (531)
+.+...+..+...+...|++++|++.|+++.+. . +.+..++..++.+|.+.|++++|...+
T Consensus 156 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 156 -ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----------------D-PGHADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------------C-TTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------C-cccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 346788889999999999999998888765442 2 345778899999999999999999999
Q ss_pred HHhhhcchhh
Q 038190 517 PSFLSRNQEE 526 (531)
Q Consensus 517 ~~~~~~~~~~ 526 (531)
++....++..
T Consensus 217 ~~~~~~~p~~ 226 (243)
T 2q7f_A 217 DKAIDIQPDH 226 (243)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHccCcch
Confidence 9987765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-13 Score=117.30 Aligned_cols=201 Identities=9% Similarity=-0.082 Sum_probs=100.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
....|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+... .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34455555666666666666666666666543 33455666666666666666666666666665532 24556666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
.+...|++++|+..++++.... | .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--M---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--C---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHHhC--C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcC
Confidence 6666666666666666666542 2 145556666666666666666666666655432 123444555555555555
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
++++|.. .++...... +.+..++..+..++...|++++|...++++.+.
T Consensus 174 ~~~~A~~-------~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALS-------QFAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHH-------HHHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 5555555 333333322 223444555555555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-13 Score=124.48 Aligned_cols=281 Identities=14% Similarity=0.065 Sum_probs=198.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHC----CC-CCChhh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRK----VF-SPDVVT 159 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 159 (531)
.+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|+++.|...++++.+. +. .....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566778888888888888887764 223 356777777888888888888888776543 11 112456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCC--------------------hhHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGF--------------------VNKVRVL 218 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 218 (531)
+..+...+...|++++|...+++........+ ......++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888999999888888765421111 00113477788888888888 8888888
Q ss_pred HHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC
Q 038190 219 FLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293 (531)
Q Consensus 219 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 293 (531)
+++.... +..+ ....+..+...+...|++++|...+++++++...... ......++..+...+...|
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------KAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHHHcC
Confidence 8776432 1111 2346777788888999999999977777777655321 1223457888899999999
Q ss_pred CHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcC
Q 038190 294 LVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGC----I-PDTSSYNTLINSYSKIE 363 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~-p~~~~~~~li~~~~~~~ 363 (531)
++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+... . ....++..+...|.+.|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 999999999887653110 11 55677888899999999999999998765311 1 11346778889999999
Q ss_pred CHHHHHHHHHHHHhC
Q 038190 364 KVEEALSLYGEMISM 378 (531)
Q Consensus 364 ~~~~a~~~~~~~~~~ 378 (531)
++++|...+++..+.
T Consensus 318 ~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999998763
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-12 Score=123.16 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=180.0
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV-DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR 329 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 329 (531)
...+++++..++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...|..+..+|...|+
T Consensus 81 ~~~~~~al~~l~~~~~~~-------~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA-------QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC-------CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccC-------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 344566666777766544 45788899999999999999 99999999998863 3358899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhC
Q 038190 330 IDDARKLFVSIESEGCIPDTSSYNTLINSYSKI---------EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNT 400 (531)
Q Consensus 330 ~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 400 (531)
+++|...|++..+.. |+...+..+...|... |++++|+..|++..+.. |+
T Consensus 153 ~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~----------------- 211 (474)
T 4abn_A 153 VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VL----------------- 211 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TT-----------------
T ss_pred HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CC-----------------
Confidence 999999999999874 6678899999999999 99999999999988742 32
Q ss_pred CCCCCHHHHHHHHHHHHcC--------CChHHHHHHHHHhhhCCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 401 KFELDLTVFNCLVDGLCKS--------WRLRSAWELFKKLPRYGPEP----NVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
+...|..+..+|... |++++|...|++..+. .| +...|..+..+|...|++++|++.|++..
T Consensus 212 ----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 212 ----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999998 9999999999999985 44 78889999999999999999988887655
Q ss_pred HHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 469 EKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 469 ~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
+. . +.+...+..+..++...|++++|.+..+++.
T Consensus 286 ~l-----------------~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 286 AL-----------------D-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HH-----------------C-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred Hh-----------------C-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 43 2 2345678889999999999999987666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-13 Score=123.23 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=199.7
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHh
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPD----VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVIC 198 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 198 (531)
.+......+...|++++|...|+++++.... + ..++..+...+...|++++|+..+++....... .+......+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4455667788999999999999999987533 3 357888999999999999999999887643111 100013567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhhhhcc
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPD----AFVYNSLIRVYCCAVN--------------------WEDAKGN 253 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 253 (531)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999988764310 112 3467778888888998 6666665
Q ss_pred hHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcC
Q 038190 254 TSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG----I-IPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ll~~~~~~g 328 (531)
+++++.+...... ......++..+...+...|++++|...+++..+.. . .....++..+...|...|
T Consensus 166 ~~~a~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 166 YEENLSLVTALGD--------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 5555555544321 12234578888889999999999999998876531 0 111336777888889999
Q ss_pred CHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC
Q 038190 329 RIDDARKLFVSIESEGCI-PD----TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE 403 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (531)
++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.. .... ...
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~--~~~ 300 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA---------------QELK--DRI 300 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHT--CHH
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------------HhcC--CcH
Confidence 999999999887643111 11 4566777888888999999988888765421 0000 000
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
....++..+...|...|++++|...+++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1234667777888888888888888887776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=120.60 Aligned_cols=253 Identities=14% Similarity=0.016 Sum_probs=169.6
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR-------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNG 267 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~ 267 (531)
+..++..+...+...|++++|..+|+++.+. ........+..+...+...|++++|...+++++.+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777777788888888888888777652 122235567777788888888888888777777777766443
Q ss_pred CCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038190 268 NGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR------GI-IPDVVVYSSLIDGYCLMGRIDDARKLFVSI 340 (531)
Q Consensus 268 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 340 (531)
. .+....++..+...+...|++++|...++++.+. +. ......+..+...|...|++++|...++++
T Consensus 106 ~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 106 D------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp T------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred C------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 2345677889999999999999999999988764 22 223566788889999999999999999998
Q ss_pred Hhc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHHHHhCCCCCCH
Q 038190 341 ESE------GCIP-DTSSYNTLINSYSKIEKVEEALSLYGEMISMG-------VRPDNSCILEAAELFRTLHNTKFELDL 406 (531)
Q Consensus 341 ~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 406 (531)
.+. +..| ...++..+...|...|++++|...++++.+.. ..+.... .....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------------~~~~~ 244 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP---------------IWMHA 244 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC---------------HHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH---------------HHHHH
Confidence 764 2122 34577888999999999999999999887521 1110000 00012
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 407 TVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
..+..+...+...+.+.+|...++...... ..+..++..+..+|...|++++|+++|++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233344445555667777777777776531 23467788999999999999999999877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=116.44 Aligned_cols=306 Identities=11% Similarity=-0.089 Sum_probs=204.2
Q ss_pred HHccCCHHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--HHccCCcchHH-----------HHHHHHHHCCCCCC---
Q 038190 97 LAGKKYYVNFICLSERLNTI--GLLPDF--VSLNILMNC--FCKMIGVSDAF-----------VALGRILRKVFSPD--- 156 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~--- 156 (531)
+.+.+++++|..+++++.+. .+..|. ..|..++.. ..-.++++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 34567888888888877543 122233 233333322 11223333333 56666544211111
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CC--C
Q 038190 157 -VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GI--Y 228 (531)
Q Consensus 157 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~--~ 228 (531)
...+......+...|++++|+..|++....... ++......+|..+...|...|++++|...+++..+. +- .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566778899999999999998764211 110013467888999999999999999999887643 11 1
Q ss_pred CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 229 PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 229 p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
....++..+...|...|++++|...+.+|+++...... ......++..+..+|...|++++|...+++..+.
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ--------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12356778888999999999999988888887765421 1223457888999999999999999999988772
Q ss_pred ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 038190 309 ----GI-IPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPDTSSYNTLINSYSKIEK---VEEALSLYGEMI 376 (531)
Q Consensus 309 ----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~ 376 (531)
+. +....++..+...|.+.|++++|...+++..+. +.......+..+...|...|+ .++|+.++++.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 22 334677888999999999999999999987653 111122335667778888888 66666666554
Q ss_pred hCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 377 SMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 377 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+..+ .....+..+...|...|++++|...|++..+
T Consensus 333 --~~~~---------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 333 --MLYA---------------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --TCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCHH---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2111 1345677889999999999999999998875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=121.13 Aligned_cols=311 Identities=10% Similarity=-0.054 Sum_probs=211.9
Q ss_pred HHccCCcchHHHHHHHHHHCC--CCCC--hhhHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCCCCC
Q 038190 132 FCKMIGVSDAFVALGRILRKV--FSPD--VVTLGCLIRG--LCMQGKFTEAS-----------GLFTKFVAFDCRPNVIP 194 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 194 (531)
+.+.+++++|..+++.+.+.- .+.+ ...|-.++.. ....++++.+. +.++.+.......+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 346799999999999986642 2223 3333333322 22234444444 66666654210000000
Q ss_pred cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCC
Q 038190 195 NVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNG 269 (531)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~ 269 (531)
....+......+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|...+.+|++++......
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-- 179 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-- 179 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--
Confidence 0111223566788899999999999998764 1111 24577888899999999999999888888887653210
Q ss_pred CCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038190 270 ELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PD----VVVYSSLIDGYCLMGRIDDARKLFVSIESE- 343 (531)
Q Consensus 270 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 343 (531)
......+++.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...|++..+.
T Consensus 180 -----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 180 -----NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 1123467888999999999999999999987753110 11 247888899999999999999999998762
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 038190 344 ---GC-IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKS 419 (531)
Q Consensus 344 ---g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 419 (531)
+. .....++..+...|.+.|++++|...+++..+.. ... +.+.....+..+...|...
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~---~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKA---GDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHH---TCHHHHHHHHHHHHHHTSS
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHc---CCHHHHHHHHHHHHHHhCC
Confidence 22 2245678889999999999999999998876521 100 1011223467788999999
Q ss_pred CC---hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 420 WR---LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 420 g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
|+ +++|..++++... .......+..+...|...|++++|.+.|++..+
T Consensus 317 ~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99 7888888887632 122345677889999999999999998876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.1e-11 Score=107.62 Aligned_cols=218 Identities=10% Similarity=0.025 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------ccCCc-------chHHHHHHHHHH-CCCCCChhhHHHHHHHHH
Q 038190 104 VNFICLSERLNTIGLLPDFVSLNILMNCFC-------KMIGV-------SDAFVALGRILR-KVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 104 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~ 168 (531)
++|+.+|++++... +.+...|..++..+. +.|++ ++|..+|++.++ .. +-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56777777776653 456667777666654 34776 788888888887 33 235668888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHH-hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVI-CYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-CAVN 246 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~ 246 (531)
..|++++|..+|++.... .|. +.. +|..++..+.+.|++++|..+|++..+... .+...|........ ..|+
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCC
T ss_pred hcCCHHHHHHHHHHHHhc--ccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCC
Confidence 888888888888888874 332 333 788888888888888888888888887532 23333332222211 2466
Q ss_pred hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHH
Q 038190 247 WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG-IIP--DVVVYSSLIDG 323 (531)
Q Consensus 247 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~ 323 (531)
.++|.. +|+...... +.+...|..++..+.+.|++++|..+|+...... +.| ....|..++..
T Consensus 185 ~~~A~~-------~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 185 KSVAFK-------IFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHH-------HHHHHHHHH-------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 666666 444433322 2355667777777777788888888887777752 343 35567777777
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 038190 324 YCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~ 343 (531)
+.+.|+.+.|..+++++.+.
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-10 Score=104.46 Aligned_cols=224 Identities=11% Similarity=0.017 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-------hcCChhhhhcchHHHHHHHHHHHhC-CCCCCccccCCHhhHHH
Q 038190 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYC-------CAVNWEDAKGNTSAALELHEEFVNG-NGELGVICHPDVLSYCS 284 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~~~~~~a~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 284 (531)
++|..+|++..... +-+...|..+...+. ..|+++......++|+.+|++.... . +.+...|..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------KKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------cccHHHHHH
Confidence 56777777776642 225666666666554 3466633333345555688888773 3 345668999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-h
Q 038190 285 IINSLCKDVLVDKAKELFLDMKSRGIIPD-VV-VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS-K 361 (531)
Q Consensus 285 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~-~ 361 (531)
++..+...|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+.... +...|........ .
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Confidence 999999999999999999999985 443 33 7999999999999999999999999987542 4445544333322 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCC-
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEP- 439 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p- 439 (531)
.|++++|..+|++..+. .|+ +...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~---------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK--YGD---------------------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp SCCHHHHHHHHHHHHHH--HTT---------------------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred cCCHHHHHHHHHHHHHh--CCC---------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 69999999999988763 232 78899999999999999999999999999852 455
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 440 -NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 440 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3668888999999999999998888776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-10 Score=109.37 Aligned_cols=282 Identities=11% Similarity=-0.028 Sum_probs=188.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCC--cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhH
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP--NVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVY 234 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~ 234 (531)
.....+...|++++|...+++..... +...+ -..+++.+...+...|++++|...+++.... |... ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455667788888888888877643 21101 1124566667777888888888888776542 1110 12234
Q ss_pred HHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---
Q 038190 235 NSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII--- 311 (531)
Q Consensus 235 ~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--- 311 (531)
..+...+...|++++|...+++++++........ .+.....+..+...+...|++++|...+++..+....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 5667778889999999997777777665432111 0112445677888899999999999999988764221
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 312 -PDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT-SSYN-----TLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 312 -~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
....++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~- 249 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN- 249 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-
Confidence 12456777888899999999999999998754222111 1222 233457789999999999988754321110
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCCcH-HHHHHHHHHHHHcCCHHH
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEPNV-VTYTVMICGLCIEGGIEK 459 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~ 459 (531)
......+..+...+...|++++|...+++.... |..++. ..+..+..++...|++++
T Consensus 250 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 250 ------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp ------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 112335678889999999999999999988652 222222 366677788899999999
Q ss_pred HHHHHHHHHHH
Q 038190 460 AYDLLPDMEEK 470 (531)
Q Consensus 460 A~~~~~~~~~~ 470 (531)
|...+++....
T Consensus 312 A~~~l~~al~~ 322 (373)
T 1hz4_A 312 AQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-13 Score=122.47 Aligned_cols=253 Identities=14% Similarity=0.028 Sum_probs=134.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChh
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTI-------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVV 158 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 158 (531)
+..+|..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...++++++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------ 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------
Confidence 3445666666666677777777766666542 111223344444444445555555555444443320
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC------CC-CCCH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR------GI-YPDA 231 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~ 231 (531)
+.... +..+ ....++..+...|...|++++|...|++..+. +. ....
T Consensus 100 ----------------------~~~~~-~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 100 ----------------------EKTLG-KDHP---AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp ----------------------HHHHC-TTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------------------HHHhC-CCCh---HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 00000 0011 13344555555555556666655555555432 11 1123
Q ss_pred hhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC---
Q 038190 232 FVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR--- 308 (531)
Q Consensus 232 ~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 308 (531)
..+..+...+...|++++|...++++++++....... .+....++..+..++...|++++|...++++.+.
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD------DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777776666665554432222 1233557888999999999999999999988763
Q ss_pred ----CCCCCHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 309 ----GIIPDVVV-------YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 309 ----~~~~~~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
...+.... +..+...+...+.+.++...+....... .....++..+..+|.+.|++++|..+|++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122111 2222223334445555555666655432 12456788899999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-11 Score=99.11 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=95.1
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...|..+...|...|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666665542 224555666666666666666666666666554332 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCC
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGP 437 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 437 (531)
.+...++++.|...+.+..+.. |+ +...+..+..+|...|++++|++.|++..+..
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~---------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~- 137 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TV---------------------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK- 137 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--cc---------------------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-
Confidence 6666666666666666555421 21 45556666666666666666666666665532
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+.+..+|..+..+|.+.|++++|++.|++.
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 224555666666666666666665555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-12 Score=122.97 Aligned_cols=212 Identities=9% Similarity=-0.093 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY-VNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
+++|+..++......+ .+...|..+...+...|++ ++|++.|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555566665544333 2566667777777777777 77777777776654 3346677777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc--------
Q 038190 147 RILRKVFSPDVVTLGCLIRGLCMQ---------GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD-------- 209 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 209 (531)
++++.. |+..++..+..+|... |++++|+..|++.... .|+ +...|..+..+|...
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL---DGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHhhcccc
Confidence 777663 4456666677777777 7777777777777665 332 566677777777766
Q ss_pred CChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHH
Q 038190 210 GFVNKVRVLFLDMKGRGIY--PDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIIN 287 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 287 (531)
|++++|...|++..+.... -+...|..+..+|...|++++|.. .|+...... +.+...+..+..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~-------~~~~al~l~-------p~~~~a~~~l~~ 300 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE-------GFSQAAALD-------PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHHhC-------CCCHHHHHHHHH
Confidence 7777777777776654210 255666667777777777766666 443333322 233445666666
Q ss_pred HHhcCCCHHHHHHHH
Q 038190 288 SLCKDVLVDKAKELF 302 (531)
Q Consensus 288 ~~~~~~~~~~a~~~~ 302 (531)
++...|++++|.+.+
T Consensus 301 ~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 301 LLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-11 Score=98.76 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 392 (531)
++.+|..+...|.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|...+....... |+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~--------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TT--------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ch---------
Confidence 6788999999999999999999999999988654 78889999999999999999999999987743 22
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 038190 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK-- 470 (531)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 470 (531)
+...+..+...+...++++.|...+.+..+.. +-+...+..+..+|...|++++|++.|++..+.
T Consensus 72 ------------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p 138 (184)
T 3vtx_A 72 ------------SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP 138 (184)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc
Confidence 67788899999999999999999999998752 336788899999999999999999999999886
Q ss_pred ---------------HhhHHHHHHHHHHHHHc
Q 038190 471 ---------------IRECLKAIELLHKMAKR 487 (531)
Q Consensus 471 ---------------i~~~~~a~~~~~~~~~~ 487 (531)
.|++++|+..|++.++.
T Consensus 139 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 139 GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 39999999999999864
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-10 Score=107.74 Aligned_cols=283 Identities=12% Similarity=-0.017 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcc
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF----VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVI 274 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~ 274 (531)
+......+...|++++|...+++........+.. .+..+...+...|++++|...+++++.+.... +.
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~----- 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH---DV----- 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TC-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc---Cc-----
Confidence 3445556778999999999999987653222222 45566677888999999999777777765542 10
Q ss_pred ccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038190 275 CHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----GII--P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347 (531)
Q Consensus 275 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 347 (531)
......++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 1112344667888899999999999999887653 222 2 23456677888999999999999999987653221
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCC
Q 038190 348 ----DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVF--NCLVDGLCKSWR 421 (531)
Q Consensus 348 ----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 421 (531)
....+..+...+...|++++|...+++.......+ +..+..... ...+..+...|+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG------------------KYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS------------------CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc------------------CcchhHHHHHHHHHHHHHHHCCC
Confidence 23567778888999999999999999876531111 011011111 134455789999
Q ss_pred hHHHHHHHHHhhhCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH-HHHH
Q 038190 422 LRSAWELFKKLPRYGPEP---NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE-ITVS 497 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~-~~~~ 497 (531)
+++|..++++.......+ ....+..+...+...|++++|.+.+++.... . ...+..++. ..+.
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~----------~---~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN----------A---RSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------H---HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H---HhCcchhhHHHHHH
Confidence 999999999988643221 1235667788899999999999988765432 1 122322222 2566
Q ss_pred HHHHHHhccCChhHHHhhHHHhh
Q 038190 498 ILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 498 ~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
.+..++...|+.++|...+++..
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 67777888888888887777643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.6e-11 Score=112.85 Aligned_cols=241 Identities=10% Similarity=-0.085 Sum_probs=174.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGI-YPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
.....+...|++++|...|++..+.-. .++ ..++..+...|...|+++.|...+.+|++++.......
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~------- 178 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS------- 178 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH-------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch-------
Confidence 345556778888888888888765311 112 34567777888888999988888888777765422100
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR----GII-PDVVVYSSLIDGYCLMGRIDDARKLFVSIES-----EGC 345 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~g~ 345 (531)
.....+++.+..+|...|++++|.+.|++..+. +.. ....++..+...|...|++++|...|++..+ ...
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 113557888999999999999999999887753 111 1235678888899999999999999999876 332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---h
Q 038190 346 IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR---L 422 (531)
Q Consensus 346 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~ 422 (531)
. ...++..+...|.+.|++++|...+++..+..... +.+.....+..+...|...|+ +
T Consensus 259 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 259 L-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR------------------SHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp G-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT------------------CCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred h-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 2 36778888999999999999999999987632211 111234456777778888888 8
Q ss_pred HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 423 RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 423 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+|..++++... .......+..+...|...|++++|.+.|++..+
T Consensus 320 ~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888877432 112344667888999999999999999976543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-08 Score=102.07 Aligned_cols=390 Identities=13% Similarity=0.035 Sum_probs=257.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCc---
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY---YVNFICLSERLNTIG-LLPDFVSLNILMNCFCKMIGV--- 138 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~--- 138 (531)
+.++.|..+|+++...-|. +...|..-+..-.+.++ ++.+..+|++.+... .+|+...|..-+....+.++.
T Consensus 80 ~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred CcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 4899999999999997665 77889999998888888 999999999998864 238888898888776665554
Q ss_pred -----chHHHHHHHHHH-CCC-CC-ChhhHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 139 -----SDAFVALGRILR-KVF-SP-DVVTLGCLIRGLCM---------QGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 139 -----~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
+.+.++|+.++. .|. .+ +...|...+..... .++++.+..+|++.+. .|.. .-..+|..
T Consensus 159 ~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~---iP~~-~~~~~w~~ 234 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC---QPMD-CLESMWQR 234 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT---SCCS-SHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh---CccH-HHHHHHHH
Confidence 334477877665 455 44 34688887765442 3457788899999885 2321 12233432
Q ss_pred HHHHHHh-------------cCChhHHHHHHHHHhh--CCCC---CC--------------------HhhHHHHHHHHHh
Q 038190 202 IIDGLCK-------------DGFVNKVRVLFLDMKG--RGIY---PD--------------------AFVYNSLIRVYCC 243 (531)
Q Consensus 202 l~~~~~~-------------~~~~~~a~~~~~~m~~--~g~~---p~--------------------~~~~~~li~~~~~ 243 (531)
....-.. ..+++.|...+.++.. .++. |. ...|...+..--.
T Consensus 235 Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~ 314 (679)
T 4e6h_A 235 YTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESD 314 (679)
T ss_dssp HHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHh
Confidence 2221111 1123344455544321 1111 10 1233333332222
Q ss_pred cCC-hhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHH
Q 038190 244 AVN-WEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK-ELFLDMKSRGIIPDVVVYSSLI 321 (531)
Q Consensus 244 ~~~-~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll 321 (531)
.+. .++. ........+|++..... +-....|...+..+...|+.++|. .+|+..... .+.+...|...+
T Consensus 315 ~~~~l~~~-~~~~Rv~~~Ye~aL~~~-------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a 385 (679)
T 4e6h_A 315 NKLELSDD-LHKARMTYVYMQAAQHV-------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLS 385 (679)
T ss_dssp CTTCCCHH-HHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred CCccccch-hhHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 110 1110 11233444666666543 456777888888888889988996 999998874 344666777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 038190 322 DGYCLMGRIDDARKLFVSIESEGC---------IPD------------TSSYNTLINSYSKIEKVEEALSLYGEMISM-G 379 (531)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~g~---------~p~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~ 379 (531)
...-+.|+++.|.++|+.+.+... .|+ ...|...+....+.|..+.|..+|.+..+. +
T Consensus 386 ~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~ 465 (679)
T 4e6h_A 386 EQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK 465 (679)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 888899999999999999876410 132 236777788888889999999999999875 2
Q ss_pred CCCC-------------cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC--cHHHH
Q 038190 380 VRPD-------------NSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP--NVVTY 444 (531)
Q Consensus 380 ~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~ 444 (531)
.... .++.+.|..+|+...+. ++-+...|...++.....|+.+.|..+|++.+.....+ ....|
T Consensus 466 ~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw 544 (679)
T 4e6h_A 466 LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIF 544 (679)
T ss_dssp GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2211 23467888888887765 33466777788888888888888999998888753211 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 445 TVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
...+.--.+.|+.+.+.++.+++.+.
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777888888888888887765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-10 Score=107.88 Aligned_cols=317 Identities=13% Similarity=-0.043 Sum_probs=213.1
Q ss_pred CChhhHHHHHHHH--HccCCHHHHHHHHHHHHhC--CCCCCH--hhHHHHHHH--HHccCCcchHH---------HHHHH
Q 038190 85 PFMPSFNSLLGAL--AGKKYYVNFICLSERLNTI--GLLPDF--VSLNILMNC--FCKMIGVSDAF---------VALGR 147 (531)
Q Consensus 85 ~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~--~~~~g~~~~a~---------~~~~~ 147 (531)
|+...-+.|-..| ...+++++|..+++++.+. .+..|. ..|-.++.. ..-.+.+..+. ..++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3444444555555 6788899999988887542 122232 233444332 11223444444 66666
Q ss_pred HHHCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 148 ILRKVFSPDV----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR-PNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 148 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
+.......+. ..+......+...|++++|+..|++....... ++......++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 12333455677899999999999998764221 111113557888999999999999999999887
Q ss_pred hhC----CC-CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH
Q 038190 223 KGR----GI-YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD 296 (531)
Q Consensus 223 ~~~----g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 296 (531)
.+. +- .+ ...+++.+...|...|++++|...+.+|+++.+.... ......++..+..+|...|+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN--------DRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHCCCHH
Confidence 642 11 11 2456778888999999999999988888887755311 1223457888999999999999
Q ss_pred HHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC---
Q 038190 297 KAKELFLDMKS-----RGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGC----IPDTSSYNTLINSYSKIEK--- 364 (531)
Q Consensus 297 ~a~~~~~~~~~-----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~p~~~~~~~li~~~~~~~~--- 364 (531)
+|...+++..+ .. +....++..+...|.+.|++++|...+++..+... ......+..+...|...++
T Consensus 240 ~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999887 42 22367788899999999999999999999876422 1123455666667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
..+|+..+++. +..+ .....+..+...|...|++++|...|++..+
T Consensus 319 ~~~al~~~~~~---~~~~---------------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKK---NLHA---------------------YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHT---TCHH---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CChh---------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666552 2111 1334677899999999999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=111.73 Aligned_cols=207 Identities=16% Similarity=0.008 Sum_probs=155.9
Q ss_pred HHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC------CC-CCC
Q 038190 241 YCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR------GI-IPD 313 (531)
Q Consensus 241 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~ 313 (531)
....|++++|...+++|++++......+ .+....++..+...+...|++++|...++++.+. +- +..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHD------HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSS------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 3567899999999999999999887655 3445778899999999999999999999988764 21 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESE-----GC--IPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSC 386 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 386 (531)
..++..+...|...|++++|...|++..+. +. ......+..+...|...|++++|...+++..+.
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 156 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-------- 156 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 567888999999999999999999998764 11 123567888899999999999999999887653
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC-------------------------------
Q 038190 387 ILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY------------------------------- 435 (531)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------- 435 (531)
++.......+....++..+..+|...|++++|..+++++.+.
T Consensus 157 -------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (283)
T 3edt_B 157 -------YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229 (283)
T ss_dssp -------HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCC
T ss_pred -------HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchh
Confidence 111100111124567889999999999999999999988752
Q ss_pred -----------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 436 -----------------GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 436 -----------------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
.......++..+..+|...|++++|+++|++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp C------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 001123456777888888888888888777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-11 Score=119.73 Aligned_cols=175 Identities=10% Similarity=0.014 Sum_probs=150.9
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+..+|+.|...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|+..|+++++..+. +..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998875 446788999999999999999999999999987543 6789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+|...|++++|++.|++..+. .|+ +..+|+.+..+|...|++++|+..|++..+.... +...+..+..++...|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~---~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 999999999999999999886 553 7889999999999999999999999998875322 5778888999999999
Q ss_pred ChhhhhcchHHHHHHHHHHHhCC
Q 038190 246 NWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
++++|.+.+++++++........
T Consensus 160 ~~~~A~~~~~kal~l~~~~~~~~ 182 (723)
T 4gyw_A 160 DWTDYDERMKKLVSIVADQLEKN 182 (723)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhChhHHhhc
Confidence 99999998988888887766554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=110.39 Aligned_cols=236 Identities=12% Similarity=-0.050 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHH
Q 038190 65 EVELNDALCFFNYMIHM-------QPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI------GL-LPDFVSLNILMN 130 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~ 130 (531)
.|++++|...|++..+. .......+|..+...+...|++++|+..++++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45666677666666552 22224668899999999999999999999998754 21 223557889999
Q ss_pred HHHccCCcchHHHHHHHHHHCC-----C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHH
Q 038190 131 CFCKMIGVSDAFVALGRILRKV-----F--SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYA 200 (531)
Q Consensus 131 ~~~~~g~~~~a~~~~~~~~~~~-----~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 200 (531)
++...|++++|...++++++.. . +....++..+...|...|++++|+..|++..... ..++......++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999988751 1 2245688889999999999999999999988751 0111112466889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC-------CCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCc
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGR-------GIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGV 273 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 273 (531)
.+...|...|++++|...|++..+. ...+....+...+..+...+........+..+...++.....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 247 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD------ 247 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC------
Confidence 9999999999999999999988753 122332233333333333333333333233333333222111
Q ss_pred cccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 274 ICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 274 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
.+....++..+...|...|++++|..+|++..+
T Consensus 248 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 -SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123345677788888888888888888887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-10 Score=93.53 Aligned_cols=162 Identities=18% Similarity=0.083 Sum_probs=87.4
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSY 359 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 359 (531)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344555555666666666666666555432 224555555555666666666666666665554321 445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 439 (531)
...|++++|...++++.+.. | .+...+..+...+...|++++|..+++++.+.. +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--P---------------------INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PN 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhcCHHHHHHHHHHHHhcC--c---------------------HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-cc
Confidence 55666666666655554421 1 144555555555555666666666655555432 22
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...+..+...+...|++++|.+.++++
T Consensus 143 ~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 143 EGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555555555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8.4e-10 Score=92.23 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. |
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------ 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA--P------------ 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------
Confidence 44556666777778888888888777665332 56677777777788888888888887776532 2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK---- 470 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 470 (531)
.+..++..+...+...|++++|.++++++.+.. +.+...+..+..++...|++++|++.++++.+.
T Consensus 74 ---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 74 ---------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 156677777777888888888888888777642 335667777777777888888888888777665
Q ss_pred -------------HhhHHHHHHHHHHHHH
Q 038190 471 -------------IRECLKAIELLHKMAK 486 (531)
Q Consensus 471 -------------i~~~~~a~~~~~~~~~ 486 (531)
.|++++|...++++.+
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2667777777776664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-09 Score=92.07 Aligned_cols=186 Identities=13% Similarity=-0.000 Sum_probs=146.3
Q ss_pred CCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038190 277 PDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 277 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 356 (531)
.|...+......+...|++++|...|++..+....++...+..+..++...|++++|...|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999998754367788888999999999999999999999987544 667888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHcCCChHHHHHHH
Q 038190 357 NSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDL-------TVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
..|...|++++|...+++..+.. |+ +. .+|..+...+...|++++|...|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PG---------------------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CC---------------------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 99999999999999999988743 32 34 46888899999999999999999
Q ss_pred HHhhhCCCCCc---HHHHHHHHHHHHHcCCH--HHHHHH-------H-HHHHHHHhhHHHHHHHHHHHHHcC
Q 038190 430 KKLPRYGPEPN---VVTYTVMICGLCIEGGI--EKAYDL-------L-PDMEEKIRECLKAIELLHKMAKRY 488 (531)
Q Consensus 430 ~~~~~~g~~p~---~~~~~~l~~~~~~~g~~--~~A~~~-------~-~~~~~~i~~~~~a~~~~~~~~~~~ 488 (531)
++..+. .|+ ...|..+..+|...|+. +++..+ + .......+.+++|+..+++.++..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999984 565 56777888888776654 222211 0 111111366778888888887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-10 Score=114.52 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=148.2
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
+-+..+|+.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...|++.++.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3456789999999999999999999999998863 235788999999999999999999999999987544 67899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 356 INSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 356 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..+|...|++++|++.|++..+. .|+ +...|..+..+|...|++++|++.|++.++.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~---------------------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPA---------------------FADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998874 343 7889999999999999999999999999985
Q ss_pred CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 436 GPEP-NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 436 g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.| +...|..+..+|...|++++|.+.+++..+.
T Consensus 141 --~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 141 --KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred --CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 44 5778999999999999999999998877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-09 Score=91.66 Aligned_cols=174 Identities=12% Similarity=-0.031 Sum_probs=93.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++.++..+. +..++..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 34555555555566666666666666655542245555555555566666666666666666555322 44455555666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcH-------HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC---HhhHHH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNV-------ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD---AFVYNS 236 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ 236 (531)
|...|++++|+..|++.... .|+ +. .+|..+...+...|++++|...|++..+. .|+ ...+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPG---NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 66666666666666665554 221 23 33555555555666666666666665543 232 234444
Q ss_pred HHHHHHhcCCh--------------------hhhhcchHHHHHHHHHHHhCC
Q 038190 237 LIRVYCCAVNW--------------------EDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 237 li~~~~~~~~~--------------------~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+...+...|+. ..+.+.+++|+..++...+..
T Consensus 159 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44444444443 222334466666777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-09 Score=97.02 Aligned_cols=214 Identities=9% Similarity=-0.063 Sum_probs=146.2
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
++++|...|++. ...|...|++++|...+.+|++++..... ......+|+.+..+|.
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~a~~~~~lg~~~~ 88 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--------EDEAGNTYVEAYKCFK 88 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHH
Confidence 477787777776 33567788888888888888777654311 1112567888899999
Q ss_pred cCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCC-C----HHHHHHHHHHH
Q 038190 291 KDVLVDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLM-GRIDDARKLFVSIESEGCIP-D----TSSYNTLINSY 359 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~g~~p-~----~~~~~~li~~~ 359 (531)
..|++++|...|++..+. |-.. -..+++.+..+|... |++++|...|++..+..... + ..++..+...|
T Consensus 89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 999999999888877653 1110 135778888889986 99999999999877642110 1 35688889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 360 SKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
.+.|++++|+..|++..+...... .... ....|..+..++...|++++|...|++..+. .
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~ 229 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNR-----------------LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--D 229 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCT-----------------TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCC-----------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--C
Confidence 999999999999999887532211 0000 1126788889999999999999999999873 4
Q ss_pred CcHH------HHHHHHHHHH--HcCCHHHHHHHHHH
Q 038190 439 PNVV------TYTVMICGLC--IEGGIEKAYDLLPD 466 (531)
Q Consensus 439 p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~ 466 (531)
|+.. .+..++.++. ..+++++|++.|++
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 4321 2344555553 34556666555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=4.9e-08 Score=86.52 Aligned_cols=254 Identities=10% Similarity=-0.008 Sum_probs=162.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY 282 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (531)
++-..-.|++..++.-...+.. .. .......+.+++...|++..... ..|....+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~--~~-~~~~~~~~~Rs~iAlg~~~~~~~----------------------~~~~~~a~ 74 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK--VT-DNTLLFYKAKTLLALGQYQSQDP----------------------TSKLGKVL 74 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC--CC-CHHHHHHHHHHHHHTTCCCCCCS----------------------SSTTHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcCc--cc-hHHHHHHHHHHHHHcCCCccCCC----------------------CCHHHHHH
Confidence 3344456888877763332221 11 22333445577777776654221 23444444
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHh
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PDTSSYNTLINSYSK 361 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~ 361 (531)
..+...+ ..+ |...|++..+.+ .++..++..+..++...|++++|.+++.+.+..|.. -+...+..++..+.+
T Consensus 75 ~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 75 DLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 4444433 322 677888777665 456666678888999999999999999998776541 256778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHH--HHc--CCChHHHHHHHHHh
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL-----DLTVFNCLVDG--LCK--SWRLRSAWELFKKL 432 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~ 432 (531)
.|+.+.|.+.+++|.+. .| +..+...|+.+ ... .+++++|..+|+++
T Consensus 149 ~~r~d~A~k~l~~~~~~------------------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNA------------------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp TTCHHHHHHHHHHHHHH------------------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc------------------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 99999999999999774 22 23455555555 333 34999999999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHcC-CCCCHHHHHHHHHHHhccCChh
Q 038190 433 PRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM-AKRY-VKPDEITVSILEELLNKDENCH 510 (531)
Q Consensus 433 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~ 510 (531)
.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +-.. .+.+ -+-+..++..++.+....|+
T Consensus 205 ~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~----------~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 205 SQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD----------YYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp HTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH----------HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred HHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh----------cccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 874 455334444555888999999998888654321 0000 0000 02355677667666666776
Q ss_pred HHHhhHHHhhhcchh
Q 038190 511 ECMNLLPSFLSRNQE 525 (531)
Q Consensus 511 ~a~~~~~~~~~~~~~ 525 (531)
+|.++++++....+.
T Consensus 271 ~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 271 DTEDLTNQLVKLDHE 285 (310)
T ss_dssp TTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 788888887766543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=111.28 Aligned_cols=190 Identities=6% Similarity=-0.145 Sum_probs=152.1
Q ss_pred CcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 038190 64 GEVELNDALCFFNYMI--------HMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 135 (531)
..|++++|++.|+++. +..+. +...|..+..++.+.|++++|+..|+++.+.. +.+...|..+..++...
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 4569999999999998 54444 66789999999999999999999999998875 55778999999999999
Q ss_pred CCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 136 IGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 136 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
|++++|...|+++++..+. +...+..+..+|.+.|++++ +..|++..+. .|+ +..+|..+..++.+.|++++|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~---~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDG---VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCc---hHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999988643 67788999999999999999 9999999986 453 778999999999999999999
Q ss_pred HHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChhhh-hcchHHHHHHHHHH
Q 038190 216 RVLFLDMKGRGIYPD-AFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEF 264 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a-~~~~~~a~~~~~~~ 264 (531)
...|++..+. .|+ ...+..+..++...+..+++ .+.+++|.+.+..+
T Consensus 554 ~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 554 VRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999998875 344 55666677777666654444 45555665565544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-09 Score=93.58 Aligned_cols=245 Identities=16% Similarity=0.054 Sum_probs=167.1
Q ss_pred chHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHH
Q 038190 139 SDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ--G-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKV 215 (531)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (531)
.+|.+++.+..+.- +.+...+ .+ + +. + ++++|...|++. ...|...|++++|
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~A 56 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA-------------------ATIYRLRKELNLA 56 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH-------------------HHHHHHTTCTHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH-------------------HHHHHHcCCHHHH
Confidence 35666777666652 2221122 22 2 32 2 477777777665 3346778999999
Q ss_pred HHHHHHHhhC----CCCCC-HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 216 RVLFLDMKGR----GIYPD-AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 216 ~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
...|++..+. |-.++ ..+|+.+..+|...|++++|...+++|++++..... ...-..+++.+...|.
T Consensus 57 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 57 GDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--------FRRGANFKFELGEILE 128 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHH
Confidence 9998877543 22222 467888899999999999999988888887754311 1112457888999999
Q ss_pred cC-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHH
Q 038190 291 KD-VLVDKAKELFLDMKSRGIIP-D----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT------SSYNTLINS 358 (531)
Q Consensus 291 ~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~------~~~~~li~~ 358 (531)
.. |++++|...|++..+..... + ..++..+...|.+.|++++|...|++..+....... ..|..+..+
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 99999999999887641110 1 356888899999999999999999999986543222 156778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHhhh
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLC--KSWRLRSAWELFKKLPR 434 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 434 (531)
+...|++++|...|++..+. .|+... ......+..++.+|. ..+++++|+..|+++..
T Consensus 209 ~~~~g~~~~A~~~~~~al~l--~p~~~~----------------~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSE--DPNFAD----------------SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCCC----------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 99999999999999987652 232000 001224555666665 56789999999988775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-07 Score=83.71 Aligned_cols=244 Identities=9% Similarity=-0.024 Sum_probs=158.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
|+-..-.|++..++.-...+.. .........+.+++...|++... ....|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 4445567888888774333221 22223444455778777777642 1123333344433333 2322
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGI-YPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
|+..|+++...+ + ++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+
T Consensus 85 --a~~~l~~l~~~~--~---~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 --NIEELENLLKDK--Q---NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp --CCHHHHHTTTTS--C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHhcC--C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 677777776543 1 2455566888888889999999999988766543 1256667778888888888888888
Q ss_pred chHHHHHHHHHHHhCCCCCCccccC-----CHhhHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHP-----DVLSYCSIINSLC----KDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.++.|.... | +..+...++.++. ..+++.+|..+|+++.+. .|+..+...++.+
T Consensus 158 -------~l~~~~~~~--------~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~ 220 (310)
T 3mv2_B 158 -------IFDNYTNAI--------EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNL 220 (310)
T ss_dssp -------HHHHHHHHS--------CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHH
T ss_pred -------HHHHHHhcC--------ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHH
Confidence 888776643 5 3455555665532 234899999999999776 4554444555558
Q ss_pred HHhcCCHHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 324 YCLMGRIDDARKLFVSIESEG---------CIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+.+.|++++|.+.++.+.+.- -.-+..+...+|......|+ +|.++++++.+.
T Consensus 221 ~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 221 HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 999999999999999776531 02256666566666666676 888999999874
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-08 Score=88.29 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=148.2
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD---VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-P-DTS 350 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p-~~~ 350 (531)
+.+...+......+.+.|++++|...|+.+.+... .+ ...+..+..+|.+.|++++|...|+++.+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566777788899999999999999999988632 13 677888889999999999999999999987432 1 245
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 038190 351 SYNTLINSYSK--------IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRL 422 (531)
Q Consensus 351 ~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 422 (531)
.+..+..++.. .|++++|...|+++.+. .|+......+...+..+... ....+..+...|...|++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAK----LARKQYEAARLYERRELY 164 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccCH
Confidence 67777888888 99999999999999874 34433333333332222211 122346778999999999
Q ss_pred HHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 038190 423 RSAWELFKKLPRYGPEPN----VVTYTVMICGLCIE----------GGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488 (531)
Q Consensus 423 ~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~ 488 (531)
++|...|+++++. .|+ ...+..+..+|... |++++|+..|+ ++++..
T Consensus 165 ~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~-----------------~~~~~~ 225 (261)
T 3qky_A 165 EAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE-----------------RLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH-----------------HHHHHC
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH-----------------HHHHHC
Confidence 9999999999874 233 45677777788766 55555555554 444333
Q ss_pred CCCC--HHHHHHHHHHHhccCChhHHHhh
Q 038190 489 VKPD--EITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 489 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
.... ......+..++.+.|+++++..+
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 2211 23455566666666666665544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-08 Score=79.97 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=104.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
+|..+...+...|++++|+.+++++.+.+ +.+..++..+...+...|+++.|...++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 56777888888899999999998887764 44667788888888888999999999988887653 35667888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
..|++++|...++++... .| .+..++..+...+...|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CC---CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 899999999999888875 33 25677888888888999999999988887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=89.87 Aligned_cols=158 Identities=11% Similarity=-0.021 Sum_probs=126.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHc------
Q 038190 65 EVELNDALCFFNYMIHMQPTPF--MPSFNSLLGALAGKKYYVNFICLSERLNTIGL--LPDFVSLNILMNCFCK------ 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~------ 134 (531)
.|++++|+..|+.+.+..|... ..++..+..++.+.|++++|+..|+++.+... +....++..+..++..
T Consensus 28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence 4699999999999998766521 56888899999999999999999999988631 1224567778888888
Q ss_pred --cCCcchHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 135 --MIGVSDAFVALGRILRKVFSPDVVTL-----------------GCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 135 --~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
.|++++|...|+++++..+. +.... ..+..+|...|++++|+..|++++.. .|+....
T Consensus 108 ~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 184 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWA 184 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTH
T ss_pred ccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchH
Confidence 99999999999999987533 33333 45678899999999999999999886 3432224
Q ss_pred HHhHHHHHHHHHhc----------CChhHHHHHHHHHhhC
Q 038190 196 VICYASIIDGLCKD----------GFVNKVRVLFLDMKGR 225 (531)
Q Consensus 196 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~ 225 (531)
...+..+..+|... |++++|...|+++.+.
T Consensus 185 ~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 185 DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 55788888888866 8899999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.8e-08 Score=77.01 Aligned_cols=126 Identities=16% Similarity=0.221 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 038190 317 YSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRT 396 (531)
Q Consensus 317 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 396 (531)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ |
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-------------- 66 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-------------- 66 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C--------------
Confidence 344455555556666666666655544322 44455555555666666666666666555422 1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038190 397 LHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 397 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
.+...+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.++++
T Consensus 67 -------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 67 -------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp -------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 144555556666666666666666666665532 223455555666666666666665555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=7.9e-07 Score=86.23 Aligned_cols=269 Identities=10% Similarity=-0.091 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC-cchHHHHHH
Q 038190 68 LNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG-VSDAFVALG 146 (531)
Q Consensus 68 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~ 146 (531)
++.|+.+|+.+...-| . |+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~~P--~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYM--S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHHHH--T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHHCC--C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666777766655322 1 6677777777777764 4577777776666655552 345566666
Q ss_pred HHHHC-CCCC-ChhhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh------------
Q 038190 147 RILRK-VFSP-DVVTLGCLIRGLC----MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCK------------ 208 (531)
Q Consensus 147 ~~~~~-~~~~-~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------ 208 (531)
.++.. |..+ +...|...+..+. ..++.+.+..+|++.+.. |... -...|......-..
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGS-LSELWKDFENFELELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTT-HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhh-HHHHHHHHHHHHHHhccccHHHHHHH
Confidence 66542 3222 4556666665443 234566677777777652 2110 11222222221100
Q ss_pred -cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHH
Q 038190 209 -DGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV-NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSII 286 (531)
Q Consensus 209 -~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 286 (531)
.+.+..|..+++.+...--..+...|...+..-...+ ..++. .....+..+|++..... +.+...|...+
T Consensus 149 ~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~-~~~~Rv~~~ye~al~~~-------p~~~~lW~~ya 220 (493)
T 2uy1_A 149 TLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGR-PHESRMHFIHNYILDSF-------YYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHH-HHHHHHHHHHHHHHHHT-------TTCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcch-hhHHHHHHHHHHHHHcC-------CCCHHHHHHHH
Confidence 1123334444444332100013334554444322111 01111 01233445777776643 44577788888
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCC---CHHHHHH
Q 038190 287 NSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEG---------CIP---DTSSYNT 354 (531)
Q Consensus 287 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g---------~~p---~~~~~~~ 354 (531)
..+.+.|+.+.|..+|+..... +.+...+. .|+...+.++ +++.+.+.- ..+ ....|..
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 8889999999999999999987 33332222 2222211111 122222110 001 1245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 038190 355 LINSYSKIEKVEEALSLYGEM 375 (531)
Q Consensus 355 li~~~~~~~~~~~a~~~~~~~ 375 (531)
.+..+.+.+..+.|..+|++.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh
Confidence 677777778899999999988
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-07 Score=80.45 Aligned_cols=173 Identities=13% Similarity=-0.042 Sum_probs=137.5
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG----RIDDAR 334 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~ 334 (531)
..|+...+.+ +..++..+...|...+++++|..+|++..+.| +...+..|...|.. + ++++|.
T Consensus 7 ~~~~~aa~~g---------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 7 SQYQQQAEAG---------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHCC---------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3777776655 67788889999999999999999999998875 66778888888887 6 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 335 KLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFN 410 (531)
Q Consensus 335 ~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 410 (531)
..|++..+.| +...+..|...|.. .+++++|+.+|++..+.+... .++..+.
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~---------------------~~~~a~~ 129 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD---------------------AAVDAQM 129 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH---------------------HHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc---------------------chHHHHH
Confidence 9999998875 67778888888877 788999999998887754210 0267888
Q ss_pred HHHHHHHc----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 038190 411 CLVDGLCK----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIE-G-----GIEKAYDLLPDMEEK 470 (531)
Q Consensus 411 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 470 (531)
.|...|.. .+++++|..+|++..+. ..+...+..|...|... | ++++|++.|++..+.
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 99999988 88999999999999885 23555777787777653 3 788888888766554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=87.17 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH----------------HHHHHHccCCcchHHHHHHHHHHCCCCCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNI----------------LMNCFCKMIGVSDAFVALGRILRKVFSPDV 157 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 157 (531)
...+...|++++|+..|++..+.. +-+...|.. +..++.+.|++++|...|++.++..+. +.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence 334445566666666666555442 222334444 667777777777777777777776533 56
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC--hhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF--VNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
.++..+..++...|++++|+..|++.... .|+ +..+|..+...|...|. .+.+...++.... ..|....+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EAD---NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 67777777777777777777777777765 442 56677777776655443 3334444444432 122222222
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHh
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVN 266 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 266 (531)
....++...|++++|.. .|++...
T Consensus 162 ~~g~~~~~~~~~~~A~~-------~~~~al~ 185 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARN-------SLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHTHHHHHH-------HHHHHTT
T ss_pred HHHHHHHHccCHHHHHH-------HHHHHHH
Confidence 33334444555555555 5555554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.5e-09 Score=83.82 Aligned_cols=139 Identities=9% Similarity=-0.108 Sum_probs=92.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|.......+. +...+-.+...|.+.|++++|++.|++.++.. +-+..+|..+..++.+.|++++|...
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34777777777776553322 34455667777777778888887777777664 44666777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL-FTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
|+++++..+. +..++..+..+|.+.|++++|... +++..+. .|+ +..+|......+...|+
T Consensus 88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~---~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPG---SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STT---CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcC---CHHHHHHHHHHHHHhCc
Confidence 7777776433 566777777777777777665544 4666654 443 56666666666655553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-08 Score=84.77 Aligned_cols=152 Identities=13% Similarity=-0.030 Sum_probs=103.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCcchHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGVSDAFV 143 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~ 143 (531)
.|++++|...|+++.+..|. +...|..+...+.+.|++++|+..+++..... |+...+..+... +...+....|..
T Consensus 19 ~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 35788888888887776555 66778888888888888888888888876553 244433322212 222234445677
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
.+++.++..+. +...+..+..++...|++++|+..|+++......+ .+...+..+...+...|+.++|...|++..
T Consensus 96 ~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 96 RLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGA---QDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc---ChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777776432 56777778888888888888888888877653221 134567777888888888888888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-08 Score=82.89 Aligned_cols=160 Identities=13% Similarity=0.046 Sum_probs=114.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIP-DVVVYSS----------------LIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.+......+...|++++|...|++..+. .| +...+.. +..+|.+.|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444556677899999999999998876 33 3445555 788899999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWR-- 421 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 421 (531)
.+. +...|..+...|...|++++|...|++..+. .|+ +..+|..+..+|...|+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~---------------------~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EAD---------------------NLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---------------------CHHHHHHHHHHHHHHhHHH
Confidence 644 7788899999999999999999999998874 343 77888888888876654
Q ss_pred hHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038190 422 LRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDME 468 (531)
Q Consensus 422 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (531)
...+...++.... ..|....+.....++...|++++|+..|++..
T Consensus 140 ~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 140 KKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445555555542 22223334444555666777777766665543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.2e-08 Score=99.97 Aligned_cols=153 Identities=12% Similarity=-0.025 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++++|...|+++.+..+. +...|..+...+.+.|++++|++.|++..+.. +.+..++..+..++...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6899999999999887665 67889999999999999999999999999875 556788999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc---CChhHHHHHHHHH
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---GFVNKVRVLFLDM 222 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m 222 (531)
++.++..+. +...+..+..+|...|++++|.+.|++..+. .|+ +..++..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE---EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999987543 6789999999999999999999999999886 442 678899999999999 9999999999998
Q ss_pred hhCC
Q 038190 223 KGRG 226 (531)
Q Consensus 223 ~~~g 226 (531)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=93.12 Aligned_cols=232 Identities=10% Similarity=-0.014 Sum_probs=153.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+++++..+.... + + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 35788999999888764332 1 0 11147788888887765 3466677888888888
Q ss_pred HHHHHHCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHHhHHHHHHHHHhcCChhHHHHH
Q 038190 145 LGRILRKVFSP-----DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVL 218 (531)
Q Consensus 145 ~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 218 (531)
|.+........ -..+|+.+..+|...|++++|+..|++........+.. .-..+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 88776542111 13477788888889999999999998876542221100 123577888888888 999999999
Q ss_pred HHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCC-HhhHHHHHHHHhcC
Q 038190 219 FLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPD-VLSYCSIINSLCKD 292 (531)
Q Consensus 219 ~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~ 292 (531)
|++..+. |-.. ...++..+...|...|++++|...+++++++...... .+. ...+..+..++...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN---------YPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------hhHHHHHHHHHHHHHHHc
Confidence 9887643 1110 1456777888899999999999977777766543211 111 23566677778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPD------VVVYSSLIDGYCLMGRIDDARK 335 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~g~~~~a~~ 335 (531)
|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 209 g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999887 4 222 12234444444 4566655554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-06 Score=78.66 Aligned_cols=222 Identities=9% Similarity=-0.031 Sum_probs=159.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hcc---CC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK--YYVNFICLSERLNTIGLLPDFVSLNILMNCF----CKM---IG 137 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~ 137 (531)
..++|+.+++.++..+|. +..+|+.--..+...+ ++++++++++.+.... +-+..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 557899999999998776 6778888888888888 9999999999998875 44555677665555 445 78
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC----
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT--EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF---- 211 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 211 (531)
+++++.+++.+++..+. +-.+|+.-..++.+.|.++ ++++.+++++..+ |. |..+|+.-...+...+.
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~---N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LK---NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TT---CHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CC---CHHHHHHHHHHHHhccccchh
Confidence 89999999999987644 7888888888888888888 9999999999873 42 78888877777777666
Q ss_pred --hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 212 --VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 212 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
++++++.++.+...... |...|+.+-..+.+.|+...... +....+...+. .-+.+...+..+..++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~------~~~~~~~~~~~----~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLE------EFSLQFVDLEK----DQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGH------HHHHTTEEGGG----TEESCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHH------HHHHHHHhccC----CCCCCHHHHHHHHHHH
Confidence 77788888877765433 67777777666666665433221 13333322110 0134556666677777
Q ss_pred hcCCCHHHHHHHHHHHHh
Q 038190 290 CKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~ 307 (531)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 777777777777777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-07 Score=78.84 Aligned_cols=179 Identities=12% Similarity=0.065 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 038190 296 DKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIE----KVEEALSL 371 (531)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~ 371 (531)
.+|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677888888774 77888889999999999999999999999875 67778888888887 6 89999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCCCC-CcHHHHHH
Q 038190 372 YGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYGPE-PNVVTYTV 446 (531)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~ 446 (531)
|++..+.| +...+..|...|.. .+++++|..+|++..+.|.. .++..+..
T Consensus 76 ~~~A~~~g-------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~ 130 (212)
T 3rjv_A 76 AEKAVEAG-------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQML 130 (212)
T ss_dssp HHHHHHTT-------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHH
T ss_pred HHHHHHCC-------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence 98887755 77888999999988 89999999999999986421 12778888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-C-----ChhHHHhhH
Q 038190 447 MICGLCI----EGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKD-E-----NCHECMNLL 516 (531)
Q Consensus 447 l~~~~~~----~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~ 516 (531)
|...|.. .+++++|++.|++. .+. ..+...+..|..+|... | ++++|...+
T Consensus 131 Lg~~y~~g~g~~~d~~~A~~~~~~A-----------------~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~ 191 (212)
T 3rjv_A 131 LGLIYASGVHGPEDDVKASEYFKGS-----------------SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWL 191 (212)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHH-----------------HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHH-----------------HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Confidence 8888888 77788887666554 333 22344566777777653 3 788999998
Q ss_pred HHhhhcchh
Q 038190 517 PSFLSRNQE 525 (531)
Q Consensus 517 ~~~~~~~~~ 525 (531)
++....+..
T Consensus 192 ~~A~~~g~~ 200 (212)
T 3rjv_A 192 NVSCLEGFD 200 (212)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHcCCH
Confidence 887665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=87.58 Aligned_cols=181 Identities=12% Similarity=-0.001 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALG 146 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 146 (531)
..+.....+.... ..+...+..+...+.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444445555442 2355677888888999999999999999998875 5577889999999999999999999999
Q ss_pred HHHHCCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 147 RILRKVFSPDVVTLG-CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 147 ~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++.... |+..... .....+...++.++|+..|++.... .|+ +...+..+...+...|++++|...|.++.+.
T Consensus 176 ~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P~---~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 176 TIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NPE---DAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CCc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 988764 4443333 2334467778888999999998886 553 7889999999999999999999999999876
Q ss_pred CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHH
Q 038190 226 GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALE 259 (531)
Q Consensus 226 g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~ 259 (531)
.... +...+..+...+...|+.+++...+.+++.
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 3221 266788999999999999999885555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=9.9e-09 Score=82.33 Aligned_cols=145 Identities=11% Similarity=-0.018 Sum_probs=112.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
|...+...|++++|+..+....... +-+...+..+...|.+.|++++|...|+++++..+. +..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 3445567789999999999987553 234556778899999999999999999999998644 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHH-HHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVL-FLDMKGRGIYPDAFVYNSLIRVYCCAV 245 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~~ 245 (531)
+++|+..|++..+. .|+ +..+|..+...|.+.|++++|... +++..+... -+..+|......+...|
T Consensus 81 ~~~A~~~~~~al~~--~p~---~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 81 TDKAVECYRRSVEL--NPT---QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 99999999999987 553 788999999999999999876665 577776422 25566666555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-06 Score=78.30 Aligned_cols=225 Identities=7% Similarity=-0.019 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CcchHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc---CC
Q 038190 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI--GVSDAFVALGRILRKVFSPDVVTLGCLIRGL----CMQ---GK 172 (531)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 172 (531)
..++|+++++.++..+ +-+..+|+.--.++...| ++++++..++.++...+. +..+|+.-..++ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3468999999998875 445667888888888888 999999999999998654 667787766666 555 78
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhh
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN--KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDA 250 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 250 (531)
+++++.+++++... .| .+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+...+... .
T Consensus 126 ~~~EL~~~~~~l~~--~p---kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~-~ 198 (306)
T 3dra_A 126 PYREFDILEAMLSS--DP---KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA-T 198 (306)
T ss_dssp THHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC-C
T ss_pred HHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc-h
Confidence 99999999999987 45 28889998888888889988 999999999987554 6777776665555555411 1
Q ss_pred hcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 038190 251 KGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDK-AKELFLDMKSRG--IIPDVVVYSSLIDGYCLM 327 (531)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 327 (531)
...++++++.++...... +-|...|+-.-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.
T Consensus 199 ~~~~~eEl~~~~~aI~~~-------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhC-------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 123555666777777765 4577888888888877777443 445666555432 134678888889999999
Q ss_pred CCHHHHHHHHHHHHh
Q 038190 328 GRIDDARKLFVSIES 342 (531)
Q Consensus 328 g~~~~a~~~~~~~~~ 342 (531)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999886
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-08 Score=83.52 Aligned_cols=163 Identities=10% Similarity=-0.019 Sum_probs=126.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH-
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG- 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 166 (531)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+....+ +...+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 356667778889999999999999987764 45678899999999999999999999999877643 44433332222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP-DAFVYNSLIRVYCCAV 245 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 245 (531)
+...++...|+..|++.... .|+ +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPD---NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHhhcccchHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 22333444578899998876 453 68899999999999999999999999998864432 3567888999999999
Q ss_pred ChhhhhcchHHHH
Q 038190 246 NWEDAKGNTSAAL 258 (531)
Q Consensus 246 ~~~~a~~~~~~a~ 258 (531)
+.++|...+.+++
T Consensus 159 ~~~~A~~~y~~al 171 (176)
T 2r5s_A 159 QGNAIASKYRRQL 171 (176)
T ss_dssp SSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-07 Score=78.67 Aligned_cols=183 Identities=10% Similarity=-0.034 Sum_probs=127.1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT--SSYNT 354 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~ 354 (531)
...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 345566777889999999999999999875321 1 1356778889999999999999999999987543211 23444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038190 355 LINSYSK------------------IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGL 416 (531)
Q Consensus 355 li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 416 (531)
+..++.. .|++++|...|+++.+. .|+......+......+... .......+...|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~----~~~~~~~~a~~~ 157 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDR----LAKYEYSVAEYY 157 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4445543 56778888888887763 34433333333222222210 011224567889
Q ss_pred HcCCChHHHHHHHHHhhhCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 417 CKSWRLRSAWELFKKLPRYGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
.+.|++++|...|+++++. .|+ ...+..+..+|.+.|++++|++.++.+..
T Consensus 158 ~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 158 TERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 9999999999999999874 343 25678889999999999999888876543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-08 Score=100.45 Aligned_cols=174 Identities=9% Similarity=-0.075 Sum_probs=141.3
Q ss_pred HccCCHHHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 98 AGKKYYVNFICLSERLN--------TIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|...|+++++..+. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999998 443 456678889999999999999999999999987543 77899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
.|++++|+..|++..+. .|+ +...|..+..++.+.|++++ ...|++..+.... +...|..+..++.+.|++++
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~---~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPG---ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STT---CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCC---ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999987 453 67889999999999999999 9999999875332 67788889999999999998
Q ss_pred hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCC
Q 038190 250 AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVL 294 (531)
Q Consensus 250 a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 294 (531)
|.. .|++....+ +-+...+..+..++...++
T Consensus 553 A~~-------~~~~al~l~-------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVR-------TLDEVPPTS-------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHH-------HHHTSCTTS-------TTHHHHHHHHHHHTC----
T ss_pred HHH-------HHHhhcccC-------cccHHHHHHHHHHHHccCC
Confidence 888 666665543 2235567777777766554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-07 Score=82.28 Aligned_cols=158 Identities=7% Similarity=-0.050 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHc-----
Q 038190 65 EVELNDALCFFNYMIHMQPTPF--MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF---VSLNILMNCFCK----- 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~----- 134 (531)
.|++++|+..|+.+.+..|... ..++..+..++.+.|++++|+..|+++.+.. +-+. .++..+..++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhh
Confidence 4699999999999998766422 3578888899999999999999999998764 2122 244444544443
Q ss_pred -------------cCCcchHHHHHHHHHHCCCCCChhhH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 038190 135 -------------MIGVSDAFVALGRILRKVFSPDVVTL-----------------GCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 135 -------------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.|++++|...|+++++..+. +..++ ..+...|.+.|++++|+..|++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 174 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGML 174 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 57899999999999987433 33333 234567788899999999999988
Q ss_pred HcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 185 AFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.. .|+......++..+..++.+.|++++|.+.++.+...+
T Consensus 175 ~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 175 RD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 76 33211123568888889999999999999999887763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-08 Score=88.16 Aligned_cols=153 Identities=11% Similarity=-0.036 Sum_probs=127.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHccCCcchHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLN-ILMNCFCKMIGVSDAF 142 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~ 142 (531)
..|++++|...|+++.+..|. +..++..+...+.+.|++++|+..++++.... |+..... .....+.+.++.+.|.
T Consensus 129 ~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 129 QESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhcccCccH
Confidence 356999999999999998776 77889999999999999999999999987763 4544333 3333466788899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDM 222 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 222 (531)
..+++.....+. +...+..+...+...|++++|+..|.++... .|+. .+...+..++..+...|+.++|...|++.
T Consensus 206 ~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 206 QQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTA-ADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--cccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999988643 7789999999999999999999999999987 3321 13778999999999999999999998876
Q ss_pred h
Q 038190 223 K 223 (531)
Q Consensus 223 ~ 223 (531)
.
T Consensus 282 l 282 (287)
T 3qou_A 282 L 282 (287)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-06 Score=79.42 Aligned_cols=367 Identities=11% Similarity=-0.031 Sum_probs=191.5
Q ss_pred cC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHH
Q 038190 100 KK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEAS 177 (531)
Q Consensus 100 ~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 177 (531)
.| ++..|..+|+++... -|. |+++.+..+|++.+.. .|++..|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777654 233 7899999999999885 5799999999988877764 45677
Q ss_pred HHHHHHHHc-CCCCCCCCcHHhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhh-
Q 038190 178 GLFTKFVAF-DCRPNVIPNVICYASIIDGLC----KDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAK- 251 (531)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~- 251 (531)
.+|+..... |.++ .+...|...+..+. ..++.+.+..+|++.......--...|...... ........+.
T Consensus 69 ~~fe~al~~vg~d~---~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYW---DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCT---TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCc---ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 888887764 4344 36678888887654 346788999999999874221112222222211 1111111111
Q ss_pred ------cchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC--C-----HHHHHHHHHHHHhCCCCCCHHHHH
Q 038190 252 ------GNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV--L-----VDKAKELFLDMKSRGIIPDVVVYS 318 (531)
Q Consensus 252 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~ 318 (531)
..+..|..+++.+...- ...+...|...+.--...+ - .+.+..+|+++.... +.+...|.
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~------~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~ 217 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLI------RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF 217 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH------hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 12222333444333211 0113345555554432221 1 345677888888753 44677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHH
Q 038190 319 SLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398 (531)
Q Consensus 319 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 398 (531)
..+..+.+.|+.+.|..+|++.... + .+...|. .|....+.++. ++.+.+.-..... +.+ ..
T Consensus 218 ~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~---~~~-----~~- 279 (493)
T 2uy1_A 218 FYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEA---ESA-----EK- 279 (493)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhcc---chh-----hh-
Confidence 8888888899999999999999887 2 2333332 22221111111 2222211000000 000 00
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-------
Q 038190 399 NTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI-EGGIEKAYDLLPDMEEK------- 470 (531)
Q Consensus 399 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~------- 470 (531)
.. .......|...+..+.+.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+...+.
T Consensus 280 ~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 280 VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp -C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 00 0001233444455544555555566666555 21 01122233221111111 22455555555554442
Q ss_pred ----------HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 471 ----------IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 471 ----------i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
+++.+.|+.+|+.+. .....|..++..-...|+.+.+..++++...
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 134455555555541 2466677777766777888888877776553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-08 Score=88.56 Aligned_cols=204 Identities=9% Similarity=-0.036 Sum_probs=143.4
Q ss_pred cCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 135 MIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 135 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
.|++++|..++++..+.... . + +...++++.|...|.+. ...|...|++++
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a-------------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA-------------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH-------------------HHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH-------------------HHHHHHcCCHHH
Confidence 46777888888877654211 1 0 11146677777666554 345677889999
Q ss_pred HHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 215 VRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 215 a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
|...|.+..+. +-.. -..+|+.+...|...|++++|...+++|++++..... ...-..++..+...|
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--------~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT--------PDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHH
Confidence 98888876542 1111 1346778888899999999999988888887754211 111245788888999
Q ss_pred hcCCCHHHHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGII----P-DVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIPD-TSSYNTLINSY 359 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p~-~~~~~~li~~~ 359 (531)
.. |++++|+..|++..+.... . ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 88 9999999999987653111 0 1457888889999999999999999998763 11111 23566677788
Q ss_pred HhcCCHHHHHHHHHHHH
Q 038190 360 SKIEKVEEALSLYGEMI 376 (531)
Q Consensus 360 ~~~~~~~~a~~~~~~~~ 376 (531)
...|++++|...|++..
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 88899999999999987
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=94.13 Aligned_cols=150 Identities=13% Similarity=-0.014 Sum_probs=112.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 038190 100 KKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGL 179 (531)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 179 (531)
.|++++|++.+++..+.. +.+...+..+...+...|++++|...|++.++..+. +..++..+..+|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 446788999999999999999999999999987543 678899999999999999999999
Q ss_pred HHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---CChhhhhcchHH
Q 038190 180 FTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCA---VNWEDAKGNTSA 256 (531)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~ 256 (531)
|++..+. .|+ +...+..+...|...|++++|.+.|++..+... .+...+..+...+... |+.++|...+++
T Consensus 80 ~~~al~~--~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA--APE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc--CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9999986 443 678999999999999999999999999887532 2577888889999999 888888874433
Q ss_pred H
Q 038190 257 A 257 (531)
Q Consensus 257 a 257 (531)
+
T Consensus 154 a 154 (568)
T 2vsy_A 154 A 154 (568)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.6e-06 Score=74.69 Aligned_cols=170 Identities=12% Similarity=0.025 Sum_probs=123.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGI-IPDV----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSS 351 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~ 351 (531)
+...+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778899999999999999887532 2221 13344666777788999999999999874322 22 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHH
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFE-LDLTVFNCLVDGLCKSWRLRSAWELFK 430 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (531)
++.+...|...|++++|...|+++.+. ++... +.. ....+|..+...|.+.|++++|..+++
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~---------------~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQ---------------LEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHSS--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHhcc--cchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 889999999999999999999988641 00000 001 133478899999999999999999999
Q ss_pred HhhhC----CCCCc-HHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 038190 431 KLPRY----GPEPN-VVTYTVMICGLCIEG-GIEKAYDLLPDME 468 (531)
Q Consensus 431 ~~~~~----g~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 468 (531)
+..+. +..+. ..+|..+..+|...| ++++|++.+++..
T Consensus 221 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88752 22222 678889999999999 4799998886543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-05 Score=71.59 Aligned_cols=172 Identities=8% Similarity=-0.050 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-C-CcchHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKK-YYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM-I-GVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g-~~~~a~~ 143 (531)
..++|+.+++.++..+|. +..+|+.--..+...| ++++++.+++.+.... +-+..+|+.-..++... + ++++++.
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 567899999999998887 7788998888888888 5999999999999886 55777888888777776 7 8999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC----
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFT--------EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF---- 211 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 211 (531)
+++.+++..+. |..+|+....++.+.|.++ ++++.++++++. .|. |..+|+.....+.+.+.
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~---N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGR---NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHhccccccc
Confidence 99999987643 7788887777777766666 899999999987 442 88899999888888876
Q ss_pred ---hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 212 ---VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 212 ---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 68888888888775433 777777666666555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-07 Score=70.54 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|......+.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|+..++++++..+. +..+|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 466777778888888888888888887765 556778888888888888888888888888877533 667788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
...|++++|+..|++..+. .|+ +..++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~---~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPS---NEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcC---CHHHHHHHH
Confidence 8888888888888888876 443 555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-06 Score=74.45 Aligned_cols=244 Identities=12% Similarity=0.046 Sum_probs=171.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVAL 145 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~ 145 (531)
++.+|...|..+...+ +..++|+++++.++..+ +-+..+|+.--.++...| ++++++..+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5666666665554433 34468999999998875 446667888888888888 599999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc-C-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh--------HH
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQ-G-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN--------KV 215 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a 215 (531)
+.++...+. +..+|+.-..++... + ++++++.+++++... .| .+..+|+.-.-.+.+.|.++ ++
T Consensus 113 ~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dp---kNy~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 113 NEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DP---KNYHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CT---TCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhccccccchhhHHHH
Confidence 999998755 778999888888777 7 899999999999876 44 27888887777776666666 89
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCH
Q 038190 216 RVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLV 295 (531)
Q Consensus 216 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 295 (531)
++.++++.+.... |...|+.....+.+.+........++++++.+....... +-|...|+-+-..+.+.|+.
T Consensus 187 Le~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 187 LDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCC
Confidence 9999999886544 777888777777776653222334566677887777765 45677777666666655543
Q ss_pred --------------------HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 296 --------------------DKAKELFLDMKSRG-----IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 296 --------------------~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.........+...+ -.+.......++..|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222221 1356777888888888888888888888887643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=77.17 Aligned_cols=171 Identities=10% Similarity=-0.005 Sum_probs=122.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcH----HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----Hh
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNV----ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY-PD----AF 232 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~ 232 (531)
..+..+...|++++|..++++....... .++. ..+..+...+...+++++|...|++....... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccC---ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3467788899999999999998874211 1232 23445777777888999999999998874222 22 23
Q ss_pred hHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC----
Q 038190 233 VYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR---- 308 (531)
Q Consensus 233 ~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 308 (531)
+++.+...|...|++++|...+++|++.++.... . ......++..+...|.+.|++++|...+++..+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 6888889999999999999988888877655311 1 1223447888889999999999999988877643
Q ss_pred CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 038190 309 GIIPD-VVVYSSLIDGYCLMG-RIDDARKLFVSIES 342 (531)
Q Consensus 309 ~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 342 (531)
+..+. ..+|..+..+|.+.| ++++|.+.+++...
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222 566777777888888 46888887777653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-06 Score=74.89 Aligned_cols=133 Identities=11% Similarity=-0.153 Sum_probs=106.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+..+...+...|++++|+..|++.. .|+..++..+..++...|++++|...|++.++..+ .+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667788899999999998774 56788899999999999999999999999888753 36778888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC----------CC-CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPN----------VI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~----------~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
..|++++|+..|++......... .. ....++..+..+|...|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999887532110 00 123678889999999999999999999988763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.1e-07 Score=70.74 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=84.5
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|...|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45567778888999999999999999988863 336788888999999999999999999999887654 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 038190 358 SYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=74.92 Aligned_cols=110 Identities=12% Similarity=-0.068 Sum_probs=85.6
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 74 FFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|+.+....+. +...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++++...+
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 44555443332 45567777888888899999999999888765 55777888888888888999999999988888753
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
. +...+..+..+|...|++++|+..|++....
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 6677888888888899999999988888775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=78.31 Aligned_cols=173 Identities=10% Similarity=-0.051 Sum_probs=125.5
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV-----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCI---PD-- 348 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~---p~-- 348 (531)
...+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556778888999999999999988775322111 22344556678889999999999998764221 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMG-VRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
..+|+.+...|...|++++|...|++..+.. ..++ .......++..+..+|...|++++|..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-----------------~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------------NEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-----------------cccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 4578899999999999999999999876310 0010 000022588999999999999999999
Q ss_pred HHHHhhhC----CCCC-cHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 038190 428 LFKKLPRY----GPEP-NVVTYTVMICGLCIEGGIEKA-YDLLPDME 468 (531)
Q Consensus 428 ~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 468 (531)
++++..+. +... -..+|..+..+|...|++++| ...+++..
T Consensus 218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99998752 1111 167788999999999999999 77676543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.6e-07 Score=67.99 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+++++++.+.. +.+..++..+...+...|++++|..+++.+.+..+ .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567777777778888888888888877654 34566777777777777888888888777776542 356677777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHH
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLC 207 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (531)
+...|++++|...|+++... .|. +...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPN---NAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCC---cHHHHHHHHHHHH
Confidence 77778888888777777665 332 4445555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-06 Score=72.72 Aligned_cols=140 Identities=14% Similarity=0.001 Sum_probs=110.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS 360 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 360 (531)
.+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.... +...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 45567778889999999999998763 568899999999999999999999999999887533 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 361 KIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK--FEL-DLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
..|++++|...|++..+......... ....+ ..| ....+..+..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLID----------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEE----------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHH----------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999987431100000 00000 011 3467889999999999999999999999874
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=9.1e-07 Score=72.00 Aligned_cols=129 Identities=10% Similarity=-0.016 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.++..+ .+..++..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456666777778888888888888877654 44667777777788888888888888888777643 3566777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH--HHHHHHHhcCChhHHHHHHHHHh
Q 038190 168 CMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA--SIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 168 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
...|++++|...|++.... .|. +...+. .++..+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPH---DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765 231 334443 33333666677777777776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=75.45 Aligned_cols=99 Identities=9% Similarity=-0.130 Sum_probs=76.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|...|+++++..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 34567777777888888888888888887765 456777888888888888888888888888877543 5667777888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|...|++++|+..|++....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.6e-08 Score=89.63 Aligned_cols=150 Identities=13% Similarity=0.006 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------------HhhHHHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD--------------FVSLNILMNCF 132 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~~~~~li~~~ 132 (531)
++++|...|+......+. +...|..+...+.+.|++++|+..|++..+...... ..+|..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p~-~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLE-QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444332222 456788888888899999999999999887642211 46777888888
Q ss_pred HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh
Q 038190 133 CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 133 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (531)
.+.|++++|...++++++..+. +..+|..+..+|...|++++|+..|++.... .|+ +..++..+..++...|+.
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~---~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPN---NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS---CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877533 6677778888888888888888888888776 442 566777788888888887
Q ss_pred hHH-HHHHHHHh
Q 038190 213 NKV-RVLFLDMK 223 (531)
Q Consensus 213 ~~a-~~~~~~m~ 223 (531)
++| ...|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 44555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.2e-07 Score=75.14 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=99.6
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHccCCc--ch
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNC-FCKMIGV--SD 140 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~~ 140 (531)
..|++++|...|+...+..+. +...|..+...+...|++++|+..|++..+.. +.+...+..+..+ +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 356899999999999887765 77899999999999999999999999998765 4567788888888 7788998 99
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 141 AFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
|...++.+++..+. +...+..+..+|...|++++|...|++....
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999887533 5778888899999999999999999999886
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-06 Score=77.90 Aligned_cols=178 Identities=9% Similarity=-0.057 Sum_probs=131.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHccCCcchHHHHHHHHHHCCCC---CC--
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-----VSLNILMNCFCKMIGVSDAFVALGRILRKVFS---PD-- 156 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~-- 156 (531)
...+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...+++.++.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345566778889999999999999988876422111 22445566778889999999999998864322 11
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFD-CRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP- 229 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p- 229 (531)
..+++.+...|...|++++|+..|++..... ..++. .....+++.+...|...|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4488899999999999999999999987321 12210 012258899999999999999999999987643 1111
Q ss_pred CHhhHHHHHHHHHhcCChhhh-hcchHHHHHHHHHH
Q 038190 230 DAFVYNSLIRVYCCAVNWEDA-KGNTSAALELHEEF 264 (531)
Q Consensus 230 ~~~~~~~li~~~~~~~~~~~a-~~~~~~a~~~~~~~ 264 (531)
-..+|..+...|...|++++| ...+++|+.+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 156788888999999999999 77688888776553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=77.58 Aligned_cols=159 Identities=8% Similarity=-0.087 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHccCCcc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTI----GLL-PDFVSLNILMNCFCKMIGVS 139 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~ 139 (531)
.|++++|.+.++.+.. .+.....++..+...+...|++++|+..+++..+. +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4688999885555533 33335667888888888999999999988887652 111 22346777777888888888
Q ss_pred hHHHHHHHHHHC----CCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCCh
Q 038190 140 DAFVALGRILRK----VFS--PDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 140 ~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 212 (531)
+|...+++..+. +.. ....++..+...+...|++++|...+++........+. ..-..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888877653 111 12345677778888888888888888777643211110 01123456667777777888
Q ss_pred hHHHHHHHHHhh
Q 038190 213 NKVRVLFLDMKG 224 (531)
Q Consensus 213 ~~a~~~~~~m~~ 224 (531)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777766553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3e-06 Score=68.88 Aligned_cols=128 Identities=10% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. |+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-----------
Confidence 44566666777888888888888887776433 57777888888888888888888888877642 22
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYT--VMICGLCIEGGIEKAYDLLPDM 467 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 467 (531)
+...+..+..++...|++++|...|+++.+.. +.+...+. .++..+...|++++|++.+.+.
T Consensus 80 ----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 80 ----------YIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 67788888889999999999999999888742 22344443 3333466778888888777654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.2e-06 Score=68.12 Aligned_cols=118 Identities=8% Similarity=-0.034 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.... +..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 45677777788888888888888888887664 446677777888888888888888888888776432 5667777788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (531)
++...|++++|...|++.... .|. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~---~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSS---CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGG---GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCC---chHHHHHHHHHHHHhc
Confidence 888888888888888887765 331 4455666666655544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.7e-06 Score=65.49 Aligned_cols=96 Identities=10% Similarity=0.046 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
.+......|.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|+..|++..+. .|+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~------------ 79 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSK------------ 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhh------------
Confidence 3445555666666666666666666655432 5566666666666677777777666666553 222
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
+...|..+..+|...|++++|.+.|++.++.
T Consensus 80 ---------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 ---------FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5566666777777777777777777766663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-06 Score=66.93 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++...+..+ .+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4456666777777778888888877776653 34566677777777777777777777777776542 245667777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCCh
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFV 212 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (531)
+...|++++|...|++.... .|+ +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~--~p~---~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL--DPD---NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhc--Ccc---chHHHHHHHHHHHHHhcC
Confidence 77777777777777777665 332 455666666666665553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-07 Score=75.65 Aligned_cols=143 Identities=10% Similarity=-0.014 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC--
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-- 229 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-- 229 (531)
..++..+...+...|++++|+..+++........+. .....++..+...+...|++++|...+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344455555555555555555555554432111000 012334555555566666666666665554332 1111
Q ss_pred CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 230 DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 230 ~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
....+..+...+...|++++|...+++++++...... ...-..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD--------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1233455555666666666666655555554332110 111123455666677777777777777666543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-06 Score=76.73 Aligned_cols=98 Identities=15% Similarity=-0.011 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++++++..+. +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4455566666666777777777777666553 335556666666666666677776666666665422 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
|...|++++|+..|++....
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-07 Score=73.80 Aligned_cols=122 Identities=8% Similarity=0.028 Sum_probs=101.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCh--
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG-LCMQGKF-- 173 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 173 (531)
+...|++++|+..+++..+.. +.+...+..+..++...|+++.|...|+++.+..+. +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 345788999999999988765 557789999999999999999999999999987533 67788888888 7789998
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
++|+..|++.... .|+ +...+..+...|...|++++|...|++..+.
T Consensus 98 ~~A~~~~~~al~~--~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSN---EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999999986 442 6788999999999999999999999999875
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=76.61 Aligned_cols=187 Identities=9% Similarity=-0.081 Sum_probs=138.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHccCCHHHHHHHHHHHHhCCCCCC----------------
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSL-------LGALAGKKYYVNFICLSERLNTIGLLPD---------------- 121 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~g~~~~---------------- 121 (531)
.++...|.+.|.++.+..|. ....|..+ ..++.+.++..+++..+.+-.+ +.|+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45999999999999998876 67789888 5666666666666666665554 1221
Q ss_pred ------HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCc
Q 038190 122 ------FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPN 195 (531)
Q Consensus 122 ------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 195 (531)
...+..+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+..... ++ |.
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d--~~ 168 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PD--KF 168 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SC--HH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CC--cc
Confidence 1233445677888999999999999988765 33336666777899999999999999865442 11 11
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 196 --VICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 196 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
..++..+..++...|++++|+..|++.......|. .........++.+.|+.++|.. +|+++....
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-------~l~~a~a~~ 238 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-------LLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-------HHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhcC
Confidence 34788889999999999999999999985433243 3355566677888999998888 887777755
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=9.1e-06 Score=62.07 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|..+++++.+.. |
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~------------ 74 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P------------ 74 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--C------------
Confidence 4445555555556666666666665554432 244555555666666666666666666655421 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY 435 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (531)
.+..++..+...|...|++++|..+|+++.+.
T Consensus 75 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 75 ---------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 14555666666666666666666666666553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.6e-06 Score=76.75 Aligned_cols=98 Identities=12% Similarity=0.005 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--SN---------------------NEKGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678888888999999999999998887742 32 778899999999999999999999
Q ss_pred HHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHH
Q 038190 429 FKKLPRYGPEPNVVTYTVMICGLCIEGGIEKA-YDLLPDMEEK 470 (531)
Q Consensus 429 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 470 (531)
|+++.+.. +-+...+..+..++...|++++| ..+|+.|...
T Consensus 253 ~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 253 FQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998852 23567888888889899999888 4567666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.7e-07 Score=77.88 Aligned_cols=131 Identities=17% Similarity=-0.009 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------hhHHHHHHHHHccCCcchHHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF----------------VSLNILMNCFCKMIGVSDAFVALGRILR 150 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 150 (531)
...+..+...+...|++++|+..|++..+.. +.+. .++..+..++...|++++|...++.+++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4467777788889999999999999988753 1122 5677777788888888888888888877
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHH-HHHHHHhh
Q 038190 151 KVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVR-VLFLDMKG 224 (531)
Q Consensus 151 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~ 224 (531)
..+ .+..++..+..+|...|++++|+..|++.... .|+ +..++..+...+...++.+++. ..|..|..
T Consensus 117 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 IDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPN---NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 643 35667777888888888888888888887765 332 5667777777777666666655 44444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.1e-07 Score=71.14 Aligned_cols=110 Identities=12% Similarity=-0.064 Sum_probs=86.3
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038190 109 LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDC 188 (531)
Q Consensus 109 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 188 (531)
.|+++.... +.+...+..+...+.+.|++++|...|+.++...+. +...|..+..+|...|++++|+..|++....
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 344444432 234556777788888899999999999998887533 7778888889999999999999999998876
Q ss_pred CCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 189 RPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 189 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.|+ +...|..+..+|...|++++|...|+...+.
T Consensus 85 ~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIX---EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 443 6778888899999999999999999888764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=68.84 Aligned_cols=99 Identities=10% Similarity=-0.130 Sum_probs=79.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++++...+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34456667777888899999999999888765 457778888888888889999999999888887543 6667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+|...|++++|+..|++....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999888888765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.2e-06 Score=74.28 Aligned_cols=186 Identities=11% Similarity=0.018 Sum_probs=126.8
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
+...+..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677888899999999999999999998863 237888999999999999999999999999987543 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C-cccHHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 358 SYSKIEKVEEALSLYGEMISMGVRP--D-NSCILEAA-----ELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
+|...|++++|...|++..+..... . ...+.... ..+..........+......+...+ .|++++|.+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHH
Confidence 9999999999999999887632110 0 01111111 1122223334444555544443332 68888998888
Q ss_pred HHhhhCCCCCcHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 038190 430 KKLPRYGPEPNVV-TYTVMICGLCIE-GGIEKAYDLLPDMEE 469 (531)
Q Consensus 430 ~~~~~~g~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 469 (531)
+...+. .|+.. ....+...+.+. +.+++|.++|+++.+
T Consensus 159 ~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 159 QRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp SGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred Hhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888764 45433 333333333333 556666666665443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-06 Score=74.66 Aligned_cols=128 Identities=11% Similarity=-0.029 Sum_probs=73.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC--C
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP--D 278 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ 278 (531)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+. .|+...... .| .
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~-------~l~~a~~~~-------d~~~~ 170 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVID-------QVKSAGKWP-------DKFLA 170 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHH-------HHTTGGGCS-------CHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHH-------HHHHhhccC-------CcccH
Confidence 34455555666666666665555432 222233333345555666665555 443221110 01 1
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD--VVVYSSLIDGYCLMGRIDDARKLFVSIESEG 344 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 344 (531)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 22455667778888888888888888775433243 2345555666777888888888888888764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.4e-06 Score=63.53 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 315 VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 315 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.. |+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~----------- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PT----------- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC-----------
Confidence 34444444444555555555555554443221 34444555555555555555555555544421 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...+..+..+|...|++++|...|++..+
T Consensus 83 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 83 ----------FIKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------chHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555555556666666666655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-06 Score=63.86 Aligned_cols=98 Identities=8% Similarity=-0.072 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++++++..+. +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456777778888888888888888887765 456778888888888888888888888888877533 56778888888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
+...|++++|+..|++....
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=6.8e-06 Score=63.43 Aligned_cols=120 Identities=10% Similarity=-0.040 Sum_probs=99.2
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
+...+..+...+...|+++.|...++++.+..+ .+..++..+..++...|++++|+..+++.... .|. +...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPA---YSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--Ccc---CHHHHH
Confidence 455778888899999999999999999988753 36788889999999999999999999999886 442 677899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW 247 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 247 (531)
.+...+...|++++|...|++..+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887532 2566677777777666653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.6e-06 Score=63.09 Aligned_cols=98 Identities=13% Similarity=0.135 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...+..+...+.+.|++++|+..|++..+. .|+ +...|..+..+|...|++++|+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~---------------------~~~~~~nlg~~~~~~~~~~~A~~~ 64 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS---------------------NITFYNNKAAVYFEEKKFAECVQF 64 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHhHHHHHHHhhhHHHHHHH
Confidence 345677888999999999999999998873 343 788999999999999999999999
Q ss_pred HHHhhhCC--CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 429 FKKLPRYG--PEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 429 ~~~~~~~g--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+++.++.. ..++ ..+|..+..++...|++++|++.|++...
T Consensus 65 ~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988631 1111 23567777888888888888777765443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-05 Score=60.99 Aligned_cols=98 Identities=7% Similarity=-0.073 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3455666666667777777777777766553 335556666666666677777777777766665322 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
+...|++++|...|++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 67777777777777666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-05 Score=67.43 Aligned_cols=193 Identities=9% Similarity=-0.066 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY----------YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
-.++|+.+++.++..+|. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-..++...+
T Consensus 45 ~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 45 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp CSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 446899999999997776 66778765544443333 688999999998875 557788988888888888
Q ss_pred C--cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc----
Q 038190 137 G--VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK-FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---- 209 (531)
Q Consensus 137 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 209 (531)
+ +++++.+++.+++..+. |..+|+.-..++...|. ++++++.+++++.. .|. |..+|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~---N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS---NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSC---CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHhhhcc
Confidence 4 78999999999998644 88899988888888898 58999999999987 442 788888877776655
Q ss_pred ----------CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----hhhhcchHHHHHHHHHHHhCC
Q 038190 210 ----------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNW----EDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 210 ----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~----~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+.++++++.++........ |...|+-+-..+.+.... ..-...++++++.++++.+..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578888888888765333 667776544444433111 112245667777888888755
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.3e-06 Score=64.47 Aligned_cols=99 Identities=15% Similarity=-0.020 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|+++.|...++.+++..+. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 56677777777888888888888888877664 445667777777777888888888888877776533 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|++++|+..|++....
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 788888888888887777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-06 Score=66.96 Aligned_cols=100 Identities=12% Similarity=-0.069 Sum_probs=80.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 165 (531)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|...|+++++..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777888888888999988888888765 446778888888888888888888888888887533 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 038190 166 GLCMQGKFTEASGLFTKFVAFD 187 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~ 187 (531)
+|...|++++|+..|++.....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888763
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-05 Score=60.54 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
.+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+.. |+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~------------ 70 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PN------------ 70 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC------------
Confidence 4445555566666666666666666655332 45566666666666666666666666665532 22
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 396 TLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 396 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...|..+..+|...|++++|...|++..+
T Consensus 71 ---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 71 ---------FVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 455666666666666666666666666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.31 E-value=8e-06 Score=61.02 Aligned_cols=103 Identities=9% Similarity=-0.092 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|++.|++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------- 69 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV-------------- 69 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------
Confidence 55678889999999999999999999998753 336778889999999999999998877665432
Q ss_pred HHcCCCC--CHHHHHHHHHHHhcc-CChhHHHhhHHHhhhcchhh
Q 038190 485 AKRYVKP--DEITVSILEELLNKD-ENCHECMNLLPSFLSRNQEE 526 (531)
Q Consensus 485 ~~~~~~~--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~ 526 (531)
. +. +...+..+..++.+. |++++|.+.+++....++.+
T Consensus 70 ---~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 ---I-EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp ---S-CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ---C-cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 2 23 578889999999999 99999999999998877654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=5.3e-05 Score=72.56 Aligned_cols=200 Identities=8% Similarity=-0.116 Sum_probs=140.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHh----
Q 038190 65 EVELNDALCFFNYMIHMQPTPFM----------------PSFNSLLGALAGKKYYVNFICLSERLNTIG-LLPDFV---- 123 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~---- 123 (531)
.|++++|++.|..+.+..+.... .++..+...|...|++++|.+.+..+...- ..++..
T Consensus 17 ~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 17 EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 46999999999999986554221 247788999999999999999999875421 112221
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRK----VFSP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVI 197 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 197 (531)
+.+.+-..+...|+++.|..++...... +..+ -..++..+...|...|++++|..+++++...-...+.. ....
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 2333334445678999999998887642 2222 24577889999999999999999999887542222211 2355
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYPD--AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...+.++++.+...
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~ 249 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNL 249 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999887542 11111 2345556667778888888888777766665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00051 Score=61.89 Aligned_cols=229 Identities=10% Similarity=-0.024 Sum_probs=153.1
Q ss_pred HccCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC----------cchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 98 AGKKYYV-NFICLSERLNTIGLLPDFVSLNILMNCFCKMIG----------VSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 98 ~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
.+.|.+. +|+++++.++..+ +-+..+|+.--.++...+. +++++.+++.++...+. +..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 8999999999875 3445567665555544443 67899999999987644 78899988888
Q ss_pred HHhcC--ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 167 LCMQG--KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF-VNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 167 ~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
+...| ++++++.+++++... +| .|..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~--dp---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA--DE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHh--CC---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 88888 489999999999987 44 288899888888888888 58999999999987544 77778776666555
Q ss_pred cCChhh-------hhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcC-----------CCHHHHHHHHHHH
Q 038190 244 AVNWED-------AKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKD-----------VLVDKAKELFLDM 305 (531)
Q Consensus 244 ~~~~~~-------a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~ 305 (531)
...... ..+.++++++.+....... +-|..+|+-+-..+.+. +.++++++.++++
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-------P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-------PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 422110 1134666777888777765 44666676444444443 3456777777777
Q ss_pred HhCCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 038190 306 KSRGIIPDV-VVYSSLID---GYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 306 ~~~~~~~~~-~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~ 343 (531)
.+. .||. ..+..++. .....|..+++...+.++.+.
T Consensus 265 le~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 265 QEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred Hhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 765 3332 22222211 111345666677777777665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4e-06 Score=66.19 Aligned_cols=98 Identities=11% Similarity=-0.103 Sum_probs=79.7
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+.+.|++++|...|+.++...+. +...|..+..+|...|++++|+..|++.... .|+ +...|..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~ 91 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALM--DIN---EPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CTHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC---CcHHHHH
Confidence 445666777788889999999999998887543 6778888888899999999999999998876 443 6677888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
+..+|...|++++|...|+...+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888899999999999999887754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-05 Score=63.22 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++..+.. |+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 77 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PK---------- 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC----------
Confidence 344555555566666666666666666554322 45556666666666666666666666665532 21
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 394 FRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
+...|..+..+|...|++++|...|++..+
T Consensus 78 -----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 78 -----------YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455666666666666666666666666665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=61.53 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC------hhhHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD------VVTLG 161 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~ 161 (531)
.++..+...+.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|+..+++.++..+... ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345666677777777777777777776654 44556677777777777777777777777665432111 12455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566666667777777777666553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=4.4e-05 Score=57.45 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=86.6
Q ss_pred CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHH
Q 038190 121 DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYA 200 (531)
Q Consensus 121 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 200 (531)
....+..+...+...|+++.|...++......+ .+...+..+..++...|++++|...+++.... .|. +...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPD---WGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--Ccc---cHHHHH
Confidence 345677888899999999999999999988753 36778888999999999999999999999886 342 677899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 201 SIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+..++...|++++|...|++..+..
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999999998753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-05 Score=60.35 Aligned_cols=98 Identities=14% Similarity=0.037 Sum_probs=76.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLG 161 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (531)
+...|..+...+...|++++|+..|++..+.. |+ ..++..+..++...|++++|...++...+..+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 55677777888888888999988888888763 44 567777788888888888888888888776432 566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888888888888888888888775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=63.08 Aligned_cols=96 Identities=8% Similarity=-0.161 Sum_probs=61.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+++++..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34445556666677777777777766654 345566666666666777777777777766665432 4556666666666
Q ss_pred hcCChHHHHHHHHHHHHc
Q 038190 169 MQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~ 186 (531)
..|++++|+..|++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-05 Score=67.28 Aligned_cols=131 Identities=14% Similarity=-0.013 Sum_probs=90.4
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD---------------VVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+..+...+...|++++|...|++..+...... ...+..+..+|...|++++|...+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44567777888889999999999998887521111 267777788888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChH
Q 038190 344 GCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLR 423 (531)
Q Consensus 344 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 423 (531)
... +...+..+..+|...|++++|...|++..+.. |+ +..++..+..++...++.+
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~---------------------~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PN---------------------NLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CC---------------------cHHHHHHHHHHHHHHHHHH
Confidence 432 66777888888888888888888888877632 32 5667777777777666666
Q ss_pred HHH-HHHHHhh
Q 038190 424 SAW-ELFKKLP 433 (531)
Q Consensus 424 ~A~-~~~~~~~ 433 (531)
++. ..|..+.
T Consensus 174 ~~~~~~~~~~f 184 (198)
T 2fbn_A 174 KKDKLTFGGMF 184 (198)
T ss_dssp C----------
T ss_pred HHHHHHHHHHh
Confidence 655 4444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-05 Score=75.63 Aligned_cols=207 Identities=12% Similarity=-0.045 Sum_probs=143.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC-C
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPD----------------FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-D 156 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 156 (531)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999987642211 1247788999999999999999998876532111 1
Q ss_pred h----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCC-CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CC--
Q 038190 157 V----VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVI-PNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GI-- 227 (531)
Q Consensus 157 ~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~-- 227 (531)
. .+.+.+...+...|+++.|..+++............ .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 233334444556789999999998876532111111 13557888999999999999999999887542 11
Q ss_pred CC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 228 YP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 228 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
.+ ...++..++..|...|++++|...+.+++.+....... ...-...+..+...+...+++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-------TQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-------HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 24567888899999999999999777776655432110 01113456777788889999999998887765
Q ss_pred h
Q 038190 307 S 307 (531)
Q Consensus 307 ~ 307 (531)
+
T Consensus 244 ~ 244 (434)
T 4b4t_Q 244 E 244 (434)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-05 Score=59.06 Aligned_cols=97 Identities=10% Similarity=-0.057 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-CChhhHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-PDVVTLGCLIRG 166 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~ 166 (531)
..|..+...+...|++++|+..+++..+.. +.+..++..+..++...|++++|...++++.+.... .+..++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 344445555555555555555555554432 223444444444444455555555555544443211 023344444444
Q ss_pred HHhc-CChHHHHHHHHHHHH
Q 038190 167 LCMQ-GKFTEASGLFTKFVA 185 (531)
Q Consensus 167 ~~~~-g~~~~a~~~~~~~~~ 185 (531)
+... |++++|++.+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 445555444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-05 Score=60.54 Aligned_cols=101 Identities=9% Similarity=-0.121 Sum_probs=80.3
Q ss_pred CCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHh
Q 038190 119 LPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVIC 198 (531)
Q Consensus 119 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 198 (531)
+.+...+..+...+...|+++.|...|+..++..+. +...+..+..++...|++++|+..|++.... .|+ +...
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~---~~~~ 79 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQ---SVKA 79 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Cch---hHHH
Confidence 345667888888888888888888888888877533 5678888888888888888888888888876 342 6778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 199 YASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
|..+..++...|++++|...|++..+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888888888887653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=61.17 Aligned_cols=98 Identities=8% Similarity=0.011 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC--CC----hhhHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFS--PD----VVTLG 161 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 161 (531)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|...++.+.+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 355666666777777777777777776654 345566666666777777777777777766654321 11 44566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 162 CLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 162 ~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+..++...|++++|...|++....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6666666677777777777666654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=84.22 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---------------HhhHHHHHHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPD---------------FVSLNILMNC 131 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---------------~~~~~~li~~ 131 (531)
++++|...|+......+. ....|..+...+.+.|++++|+..|++.++.. +.+ ..+|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444332222 45577888888899999999999999987753 222 4677777777
Q ss_pred HHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCC
Q 038190 132 FCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGF 211 (531)
Q Consensus 132 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (531)
|.+.|++++|+..++++++..+. +..+|..+..+|...|++++|+..|++.... .|+ +..++..+..++.+.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~---~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQ---NKAARLQISMCQKKAKE 400 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C-------CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHH
Confidence 88888888888888888776533 5667777778888888888888888887765 342 55677777777777777
Q ss_pred hhHHHH-HHHHH
Q 038190 212 VNKVRV-LFLDM 222 (531)
Q Consensus 212 ~~~a~~-~~~~m 222 (531)
.+++.+ .+..|
T Consensus 401 ~~~a~~~~~~~~ 412 (457)
T 1kt0_A 401 HNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 766653 33444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=60.55 Aligned_cols=115 Identities=10% Similarity=0.027 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAEL 393 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 393 (531)
...+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE------------ 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc------------
Confidence 345666777788888888888888888776432 6677888888888899999999988887663210
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHH
Q 038190 394 FRTLHNTKFELD----LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGL 451 (531)
Q Consensus 394 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 451 (531)
..++ ..++..+..+|...|++++|...|+++.+. .|+...+..+..+.
T Consensus 71 --------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 --------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp --------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred --------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 0012 667888999999999999999999999885 45665555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=8.4e-06 Score=78.87 Aligned_cols=115 Identities=10% Similarity=-0.005 Sum_probs=86.0
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
..|++++|...|+++.+..+. +..+|..+..++.+.|++++|++.+++..+.. +.+..++..+..+|...|++++|..
T Consensus 18 ~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 456899999999988887665 67788888888888899999999998888775 4467788888888888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRG--LCMQGKFTEASGLFT 181 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 181 (531)
.|+++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888876432 44455555555 777788888888877
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-05 Score=60.11 Aligned_cols=96 Identities=10% Similarity=-0.065 Sum_probs=81.5
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASII 203 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 203 (531)
.+..+...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..|++.... .|+ +...+..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~---~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPK---DIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---CHHHHHHHH
Confidence 4556677888899999999999999987543 7788888999999999999999999999887 453 677889999
Q ss_pred HHHHhcCChhHHHHHHHHHhhC
Q 038190 204 DGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.++...|++++|...|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00017 Score=56.92 Aligned_cols=100 Identities=12% Similarity=-0.019 Sum_probs=86.8
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD----VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSS 351 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 351 (531)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++..+.... +...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHH
Confidence 345677888999999999999999999999876 455 677888889999999999999999999887433 6778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 352 YNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 352 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
+..+..+|...|++++|...|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888999999999999999999998874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=9e-05 Score=56.97 Aligned_cols=95 Identities=14% Similarity=-0.037 Sum_probs=59.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDF---VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD--VVTLGCLIR 165 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 165 (531)
..+...+...|++++|+..|+++.+.. +.+. ..+..+..++.+.|++++|...|+.+++..+... ..++..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344555666777777777777776643 2222 3566666667777777777777777766543211 445566666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038190 166 GLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~ 186 (531)
++...|++++|...|+++...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777664
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=77.78 Aligned_cols=137 Identities=7% Similarity=-0.105 Sum_probs=105.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CC-CHhhHH
Q 038190 166 GLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-----GI-YP-DAFVYN 235 (531)
Q Consensus 166 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g~-~p-~~~~~~ 235 (531)
.+...|++++|+.++++..... ..++......+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999998887542 22222123458999999999999999999999886532 21 12 346688
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSR 308 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 308 (531)
.|...|...|++++|...+++|+++++.....+ .+....+.+.+..++...+.+++|+.+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS------HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999887665 3334455666777788888899999999888753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-06 Score=81.71 Aligned_cols=124 Identities=10% Similarity=-0.017 Sum_probs=98.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
|..+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|...++++++..+. +..++..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344455678899999999999998874 456889999999999999999999999999998543 67889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH--HHhcCChhHHHHHHH
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG--LCKDGFVNKVRVLFL 220 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 220 (531)
.|++++|++.|++..+. .|+ +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~--~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV--KPH---DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH--STT---CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999886 342 44556666555 888899999999988
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.1e-05 Score=62.29 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 038190 316 VYSSLIDGYCLMGRIDDARKLFVSIESEGCI-PD----TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEA 390 (531)
Q Consensus 316 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 390 (531)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------- 79 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA----------- 79 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Confidence 4455555666666666666666665442110 01 1356677778888888888888887765421
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 391 AELFRTLHNTKF-ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY----GPEP-NVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
. +.+. .....++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+
T Consensus 80 ----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 80 ----R---QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp ----H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----H---HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 0 0000 012456788899999999999999999988752 1111 2456778888899999999999888
Q ss_pred HHHHH
Q 038190 465 PDMEE 469 (531)
Q Consensus 465 ~~~~~ 469 (531)
++..+
T Consensus 153 ~~a~~ 157 (164)
T 3ro3_A 153 EKHLE 157 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=6e-06 Score=62.61 Aligned_cols=25 Identities=8% Similarity=-0.091 Sum_probs=9.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLN 114 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~ 114 (531)
|..+...+...|++++|+..|++..
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333344444444443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=63.86 Aligned_cols=136 Identities=12% Similarity=-0.026 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-C----Ch
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLL-PD----FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-P----DV 157 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~ 157 (531)
.++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++..+.... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777777888888888888877543211 11 135666777777778888888777776653211 0 13
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-CCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 158 VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPN-VIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 158 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
.++..+..++...|++++|...+++........+ ......++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4566666777777777777777776654311110 00113345566666666677777776666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.4e-05 Score=75.16 Aligned_cols=133 Identities=6% Similarity=-0.045 Sum_probs=101.5
Q ss_pred HHHhcCChhHHHHHHHHHhhC---CCCC----CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccC
Q 038190 205 GLCKDGFVNKVRVLFLDMKGR---GIYP----DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHP 277 (531)
Q Consensus 205 ~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (531)
.+...|++++|..++++..+. -+.+ ...+++.+..+|...|++++|...+++++++++...... .+-
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~------Hp~ 391 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN------NAQ 391 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT------CHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC------CHH
Confidence 356789999999999887542 1222 246788999999999999999999999999998887665 444
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSR-----G--IIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE 343 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 343 (531)
...+++.|...|...|++++|..++++..+- | .+....+.+.+-.++...+.++.|+.+|.++.+.
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999887642 2 1112334455666777778888888888887653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-06 Score=62.18 Aligned_cols=106 Identities=12% Similarity=-0.027 Sum_probs=80.9
Q ss_pred ccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHH
Q 038190 99 GKKYYVNFICLSERLNTIG--LLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 176 (531)
..|++++|+..|++.++.+ -+.+..++..+..++...|++++|...|+++++..+. +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3578888889998888764 1334567889999999999999999999999998644 678889999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHh
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCK 208 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (531)
+..|++........ ++...|...+..|..
T Consensus 81 ~~~~~~al~~~p~~---~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 81 VELLLKIIAETSDD---ETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHCCC---HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHhCCCc---HHHHHHHHHHHHHHH
Confidence 99999998864332 355556666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=4.6e-05 Score=70.94 Aligned_cols=120 Identities=12% Similarity=-0.027 Sum_probs=61.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI---------------GLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVF 153 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 153 (531)
.|..+...+.+.|++++|+..|++.++. --+.+..+|..+..++.+.|++++|...++++++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 3556666677777777777777776641 0011233445555555555555555555555554432
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhH
Q 038190 154 SPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNK 214 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (531)
. +..++..+..+|...|++++|+..|++..+. .|+ +...+..+...+...++.++
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~---~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE---DKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHHHHHHHHHH
Confidence 1 3444555555555555555555555555543 221 33444444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.7e-05 Score=61.51 Aligned_cols=99 Identities=12% Similarity=0.025 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CC----------CCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTI-------GL----------LPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
...+......+.+.|++++|+..|.+.+.. .- +.+..+|..+..++.+.|+++.|...++.++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677777888899999999998887754 00 1122345555555555666666666666555
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+..+. +...|..+..+|...|++++|+..|++....
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 54322 4445555555566666666666666555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00097 Score=65.72 Aligned_cols=189 Identities=10% Similarity=-0.012 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGR----------IDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
...++|++.++++...+.. +...|+.--.++...|+ ++++.+.++.+.+...+ +..+|+.-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456889999999886422 55666666666666666 99999999999988766 888898888888888
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHhhhCCCCC
Q 038190 363 E--KVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW-RLRSAWELFKKLPRYGPEP 439 (531)
Q Consensus 363 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p 439 (531)
+ +++++++.++++.+.. | -|..+|+....++.+.| .++++++.++++.+..+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d--~---------------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~- 176 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD--E---------------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS- 176 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC--T---------------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-
T ss_pred ccccHHHHHHHHHHHHhhc--c---------------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-
Confidence 8 7799999999998854 2 28899999999999999 899999999999986433
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhH
Q 038190 440 NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHE 511 (531)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 511 (531)
|...|+.....+...++..++..- ..+ ..+.++++++++++++... +-+...|..+..++.+.|+.++
T Consensus 177 n~saW~~r~~ll~~l~~~~~~~~~-~~~--~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 177 NYSSWHYRSCLLPQLHPQPDSGPQ-GRL--PENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHSCCCCSSSC-CSS--CHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred CccHHHHHHHHHHhhccccccccc-ccc--cHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 778888877777664211000000 000 0023455666666666554 3367889999999998888655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00014 Score=69.94 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--SA---------------------NEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc---------------------cHHHHHHHHHHHHHccCHHHHHHH
Confidence 4677788888888889988888888887632 32 678888888999999999999999
Q ss_pred HHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 038190 429 FKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 429 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
|+++++. .| +...+..+..++.+.|+.++|.
T Consensus 374 ~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 374 FEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988874 34 4567777777888888777665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00025 Score=54.37 Aligned_cols=96 Identities=19% Similarity=0.035 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHH
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV---VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD--TSSYNTLI 356 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~--~~~~~~li 356 (531)
+..+...+...|++++|...|+.+.+.... +. ..+..+..+|...|++++|...|+++.+...... ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 445677888999999999999999875321 22 4777788899999999999999999988753311 56678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 038190 357 NSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
.+|...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999874
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00016 Score=58.34 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHH
Q 038190 349 TSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWEL 428 (531)
Q Consensus 349 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (531)
...|..+..+|.+.|++++|+..+++..+. .|+ +...|..+..+|...|++++|...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~---------------------~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EET---------------------NEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STT---------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCc---------------------chHHHHHHHHHHHHHhcHHHHHHH
Confidence 456777777888888888888888877763 232 677788888888888888888888
Q ss_pred HHHhhhCCCCCc
Q 038190 429 FKKLPRYGPEPN 440 (531)
Q Consensus 429 ~~~~~~~g~~p~ 440 (531)
|++..+. .|+
T Consensus 120 ~~~al~l--~p~ 129 (162)
T 3rkv_A 120 LKLLLRN--HPA 129 (162)
T ss_dssp HHHHHHH--CGG
T ss_pred HHHHHhc--CCC
Confidence 8888774 454
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00021 Score=70.36 Aligned_cols=174 Identities=9% Similarity=-0.081 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKY----------YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
..++|+..++.+...+|. +..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 567899999999998887 77888887777777777 999999999999876 557778999888899999
Q ss_pred --CcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc----
Q 038190 137 --GVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG-KFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD---- 209 (531)
Q Consensus 137 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 209 (531)
++++++..++++++..+. +..+|+....++.+.| .++++++.++++++. .|. +..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~---n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS---NYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCC---CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCC---CccHHHHHHHHHHhhcccc
Confidence 669999999999998644 8889999888889999 899999999999876 443 788898888777663
Q ss_pred ----------CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 210 ----------GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 210 ----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+.++++++.+++....... +...|...-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888765322 67778777777777766544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.9e-05 Score=57.17 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKM 484 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~ 484 (531)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|++.+++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--------------- 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------
Confidence 56788889999999999999999999998852 33678889999999999999999877765543
Q ss_pred HHcCCCCC-------HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 485 AKRYVKPD-------EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 485 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
..|+ ...+..+..++...|++++|...+++++..
T Consensus 67 ----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 107 (111)
T 2l6j_A 67 ----YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEG 107 (111)
T ss_dssp ----SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSSS
T ss_pred ----hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHHH
Confidence 2344 566777888999999999998888776543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00017 Score=67.09 Aligned_cols=89 Identities=11% Similarity=0.004 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHH
Q 038190 348 DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWE 427 (531)
Q Consensus 348 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 427 (531)
+...|..+..+|.+.|++++|+..+++..+. .|+ +...|..+..+|...|++++|..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~---------------------~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPS---------------------NTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cch---------------------hHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788888889999999999999888864 333 77888899999999999999999
Q ss_pred HHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHH
Q 038190 428 LFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAY 461 (531)
Q Consensus 428 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 461 (531)
.|+++.+. .| +...+..+..++...++.+++.
T Consensus 329 ~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 329 DLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998874 34 5666666777776667666654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-05 Score=70.64 Aligned_cols=129 Identities=11% Similarity=-0.004 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh------------------hHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFV------------------SLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
..|..+...+.+.|++++|+..|++..... |+.. .|..+..++.+.|++++|...+++++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345666667777788888888888776542 3322 55566666666666666666666666
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHH-HHhcCChhHHHHHHHHHhh
Q 038190 150 RKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDG-LCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 150 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~ 224 (531)
+..+ .+..+|..+..+|...|++++|+..|++.... .|+ +..++..+... ....+..+.+..+|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~---~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APD---DKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6532 24556666666666666666666666666543 221 33344444433 2233445555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00024 Score=55.90 Aligned_cols=63 Identities=16% Similarity=0.006 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCCCCcHHhH----HHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAF-----DCRPNVIPNVICY----ASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
.|..+..++.+.|++++|+..+++.+.. ...|+ +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777888888888888888777764 11332 56677 7888888888888888888887754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=56.56 Aligned_cols=97 Identities=15% Similarity=-0.024 Sum_probs=74.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC------CH-----hhHHHHHHHHHccCCcchHHHHHHHHHHC------
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLP------DF-----VSLNILMNCFCKMIGVSDAFVALGRILRK------ 151 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 151 (531)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 44555666777888888888888887653110 22 27888888888999999999999888876
Q ss_pred -CCCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 152 -VFSPDVVTL----GCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 152 -~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+. +...| .....++...|++++|+..|++..+.
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 432 55677 88889999999999999999998765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00086 Score=52.19 Aligned_cols=111 Identities=13% Similarity=-0.023 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEA 368 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a 368 (531)
+++++|.++|++..+.|. ++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356788888888887762 2332 5566666677888888888887764 56677777777776 6777777
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCC
Q 038190 369 LSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 436 (531)
+.+|++..+.| ++..+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g-------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN-------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT-------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 66777778888877 778888888888887765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00059 Score=53.17 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCcchHH
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK----MIGVSDAF 142 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~ 142 (531)
++++|+..|++..+.+. ...+ |...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 55555555555555442 1122 4444444445555555555555543 34444444444444 44555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 038190 143 VALGRILRKVFSPDVVTLGCLIRGLCM----QGKFTEASGLFTKFVA 185 (531)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~ 185 (531)
.+|++..+.| +...+..|...|.. .+++++|...|++..+
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 5555554443 33444444444444 4455555555544444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=8.2e-05 Score=55.95 Aligned_cols=80 Identities=11% Similarity=-0.137 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHH
Q 038190 70 DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRIL 149 (531)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 149 (531)
.|+..|+.+.+..+. +...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567778888776654 67788888888888888888888888887765 4456678888888888888888888888877
Q ss_pred HC
Q 038190 150 RK 151 (531)
Q Consensus 150 ~~ 151 (531)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=67.07 Aligned_cols=145 Identities=13% Similarity=0.106 Sum_probs=86.6
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038190 279 VLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINS 358 (531)
Q Consensus 279 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 358 (531)
...+..+...+.+.|++++|...|++..+. .|+... +...|+..++...+ ....|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 556777888888899999999999887765 333321 22334444443322 12377888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCC
Q 038190 359 YSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPE 438 (531)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 438 (531)
|.+.|++++|+..+++..+.. |+ +...|..+..+|...|++++|...|++..+. .
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~--p~---------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~ 294 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE--EK---------------------NPKALFRRGKAKAELGQMDSARDDFRKAQKY--A 294 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--C
Confidence 999999999999999988742 32 7889999999999999999999999999874 4
Q ss_pred Cc-HHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 038190 439 PN-VVTYTVMICGLC-IEGGIEKAYDLLPDM 467 (531)
Q Consensus 439 p~-~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 467 (531)
|+ ...+..+..... ..+..+++.++|.+|
T Consensus 295 p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 295 PDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 444444444422 344455555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=3.2e-05 Score=57.66 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC-C----hhhH
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-D----VVTL 160 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~ 160 (531)
+...|..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...++++++..+.. + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34556666667777777777777777776654 3456666677777777777777777777776653221 0 3334
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 038190 161 GCLIRGLCMQGKFTEASGL 179 (531)
Q Consensus 161 ~~li~~~~~~g~~~~a~~~ 179 (531)
..+..++...|+++.|+..
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 4444444444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=8.3e-05 Score=58.41 Aligned_cols=96 Identities=10% Similarity=-0.023 Sum_probs=72.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCH----------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYY----------VNFICLSERLNTIGLLPDFVSLNILMNCFCK 134 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 134 (531)
.+.+++|+..++...+.+|. +...|..+..++...+++ ++|+..|++.++.. +-+..+|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 34789999999999998877 888888888888887765 48888888888775 4466788888888877
Q ss_pred cC-----------CcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 135 MI-----------GVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 135 ~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
.| ++++|...|+++++. .|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 64 788888888888776 44544444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00034 Score=52.43 Aligned_cols=79 Identities=16% Similarity=0.018 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038190 105 NFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 105 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.|+..|++..+.. +.+...+..+..++...|++++|...|+++++..+. +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3555666665543 345566666666677777777777777776665422 45566666666777777777777776665
Q ss_pred H
Q 038190 185 A 185 (531)
Q Consensus 185 ~ 185 (531)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=48.64 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHC
Q 038190 88 PSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRK 151 (531)
Q Consensus 88 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 151 (531)
..|..+...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444455555555555555555554432 223344444444444555555555555544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=46.37 Aligned_cols=81 Identities=19% Similarity=0.126 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHH
Q 038190 122 FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYAS 201 (531)
Q Consensus 122 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (531)
...+..+...+...|++++|...+++.++..+. +..++..+..++...|++++|+..|++.... .|+ +..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~---~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN---NAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCC---CHHHHHH
Confidence 345556666666667777777777666665322 4556666666666777777777777666654 232 4445555
Q ss_pred HHHHHHh
Q 038190 202 IIDGLCK 208 (531)
Q Consensus 202 l~~~~~~ 208 (531)
+..++..
T Consensus 83 l~~~~~~ 89 (91)
T 1na3_A 83 LGNAKQK 89 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00073 Score=63.77 Aligned_cols=92 Identities=13% Similarity=-0.096 Sum_probs=71.8
Q ss_pred cCCChHHHHHHHHHhhh---CCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Q 038190 418 KSWRLRSAWELFKKLPR---YGPEPN----VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVK 490 (531)
Q Consensus 418 ~~g~~~~A~~~~~~~~~---~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~ 490 (531)
..|++++|..++++.++ .-+.|+ ..+++.+..+|...|++++|+.++++ ++.++++..-.. .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~----------aL~i~~~~lG~~-H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK----------IIKPYSKHYPVY-S 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------HHHHHHHHSCSS-C
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH----------HHHHHHHHcCCC-C
Confidence 46889999999998765 112232 46789999999999999999999864 566676666332 3
Q ss_pred CCH-HHHHHHHHHHhccCChhHHHhhHHHhh
Q 038190 491 PDE-ITVSILEELLNKDENCHECMNLLPSFL 520 (531)
Q Consensus 491 ~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 520 (531)
|+. .+++.|+.+|...|++++|..++++..
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 444 679999999999999999999988743
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0006 Score=53.55 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=60.5
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcc----------hHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038190 98 AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVS----------DAFVALGRILRKVFSPDVVTLGCLIRGL 167 (531)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~li~~~ 167 (531)
.+.+.+++|++.+++..+.. +.+...|..+..++...++++ +|+..|++.++..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567788888888888775 557778888888888777654 777777777766433 555666677777
Q ss_pred HhcC-----------ChHHHHHHHHHHHHc
Q 038190 168 CMQG-----------KFTEASGLFTKFVAF 186 (531)
Q Consensus 168 ~~~g-----------~~~~a~~~~~~~~~~ 186 (531)
...| ++++|+..|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 6653 666666666666654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0025 Score=46.14 Aligned_cols=65 Identities=20% Similarity=0.002 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77889999999999999999999999999853 225678999999999999999999999876654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00066 Score=49.35 Aligned_cols=61 Identities=13% Similarity=-0.026 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038190 123 VSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFV 184 (531)
Q Consensus 123 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 184 (531)
.++..+..++...|++++|...|+++++..+. +..+|..+..+|...|++++|+..|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444443322 33344444444444444444444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.01 Score=61.76 Aligned_cols=169 Identities=15% Similarity=0.074 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 038190 283 CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKI 362 (531)
Q Consensus 283 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~ 362 (531)
..++..+.+.|.+++|.++.+.- ..-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 66677777788888877665321 11133456779999998886443 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHH
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVV 442 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 442 (531)
++++.|.+.|..+.. |..+...|...|+.+...++.+.....|
T Consensus 695 ~~~~~A~~~y~~~~d-------------------------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------ 737 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD-------------------------------LESLFLLHSSFNNKEGLVTLAKDAETTG------ 737 (814)
T ss_dssp TCHHHHHHHHHHHTC-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred CCHHHHHHHHHHccC-------------------------------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence 999999999987642 3344555555777776666655555432
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChhHHHhh
Q 038190 443 TYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE----ITVSILEELLNKDENCHECMNL 515 (531)
Q Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 515 (531)
-++....+|.+.|++++|++++.++ +++++|..+-+. . .|.. .+...+...+...|+.+.|..+
T Consensus 738 ~~~~A~~~~~~~g~~~~a~~~~~~~----~~~~~A~~lA~~---~--~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l 805 (814)
T 3mkq_A 738 KFNLAFNAYWIAGDIQGAKDLLIKS----QRFSEAAFLGST---Y--GLGDNEVNDIVTKWKENLILNGKNTVSERV 805 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHHHHHH---T--TCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred chHHHHHHHHHcCCHHHHHHHHHHc----CChHHHHHHHHH---h--CCChHHHHHHHHHHHHHHHhccchhHHHhh
Confidence 2244445577788888888887664 566777776554 2 3444 5666677777788876555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0015 Score=61.85 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=81.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCC-CHhh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR-----G-IYP-DAFV 233 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~~ 233 (531)
+..+.+.|++++|+.++++..... ..++......+++.|..+|...|++++|+.++++.... | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999998642 22222223458899999999999999999999887542 2 122 2456
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
++.+...|...|++++|...+++|+++++.....+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999999998876554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00077 Score=63.64 Aligned_cols=94 Identities=4% Similarity=-0.107 Sum_probs=76.8
Q ss_pred hcCChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHh
Q 038190 208 KDGFVNKVRVLFLDMKGR---GIYPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVL 280 (531)
Q Consensus 208 ~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 280 (531)
..|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+..+++++++++...... .+-...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~------Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY------SLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS------CHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC------ChHHHH
Confidence 457899999999887542 12222 46788999999999999999999999999999887665 344466
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+++.+...|...|++++|+.++++..+
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 799999999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=62.16 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=80.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccc
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGR---GIYPD----AFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVIC 275 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (531)
+..+.+.|++++|..++++..+. -+.|+ ..+++.+..+|...|++++|+..+++++++++...... .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~------H 367 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS------H 367 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS------C
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC------C
Confidence 45566789999999999998753 12222 45788899999999999999999999999999887665 4
Q ss_pred cCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 276 HPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 276 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
+....+++.+...|...|++++|..++++..+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44566799999999999999999999987764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.027 Score=51.05 Aligned_cols=142 Identities=9% Similarity=-0.033 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 038190 311 IPDVVVYSSLIDGYC--LMG---RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385 (531)
Q Consensus 311 ~~~~~~~~~ll~~~~--~~g---~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 385 (531)
+.+...|...+++.. ..+ +..+|..+|++..+..+. ....|..+..+|.... ..+. .+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~-------------~~~~-~~~~ 255 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRH-------------SQHP-LDEK 255 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH-------------HHSC-CCHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHh-------------ccCC-Cchh
Confidence 456677777776543 333 457899999999987433 3455555555554100 0000 0000
Q ss_pred cHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 038190 386 CILEAAELFRTLHN-TKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLL 464 (531)
Q Consensus 386 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (531)
........+..... ...+.+..+|..+...+...|++++|...++++... .|+...|..+...+.-.|++++|++.|
T Consensus 256 ~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~ 333 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAY 333 (372)
T ss_dssp HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00111111111111 112447889998888888889999999999999996 478888888888999999999998888
Q ss_pred HHHHH
Q 038190 465 PDMEE 469 (531)
Q Consensus 465 ~~~~~ 469 (531)
++...
T Consensus 334 ~~Alr 338 (372)
T 3ly7_A 334 LTAFN 338 (372)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.036 Score=50.19 Aligned_cols=144 Identities=8% Similarity=-0.082 Sum_probs=96.5
Q ss_pred CCCChhhHHHHHHHHHc--c---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc---cCCcc--h---HHHHHHHHH
Q 038190 83 PTPFMPSFNSLLGALAG--K---KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCK---MIGVS--D---AFVALGRIL 149 (531)
Q Consensus 83 ~~~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~g~~~--~---a~~~~~~~~ 149 (531)
+..+..+|...+++... . .++.+|+.+|++.++.. +-....|..+..+|.- .+.+. . ....+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 44578899998877542 2 34688999999999874 3344556555544431 11111 1 111222211
Q ss_pred HC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 038190 150 RK-VFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIY 228 (531)
Q Consensus 150 ~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 228 (531)
.. ..+.+..+|..+...+...|++++|...+++....+ | +...|..+...+.-.|++++|.+.|++.... .
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~ 340 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M----SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--R 340 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 11 124467788887777777899999999999999873 3 6777888888899999999999999988875 4
Q ss_pred CCHhhHH
Q 038190 229 PDAFVYN 235 (531)
Q Consensus 229 p~~~~~~ 235 (531)
|...||.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 6666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.099 Score=45.40 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHcC-----CChHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKS-----WRLRSAWELFKKLPRYGPEP--NVVTYTVMICGLCIE-GGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 469 (531)
+...|..|...|... |+.++|.+.|++.++. .| +..++..+...++.. |+.++|.+.+++...
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 356899999999994 9999999999999995 55 377788888888884 989988777765543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0042 Score=44.69 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=34.0
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCcchHHHHHHHHHHCC
Q 038190 95 GALAGKKYYVNFICLSERLNTIGLLPDFV-SLNILMNCFCKMIGVSDAFVALGRILRKV 152 (531)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 152 (531)
..+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|...|+++++..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34555666666666666665543 33444 56666666666666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.038 Score=42.83 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=63.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHcCCHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSW---RLRSAWELFKKLPRYGPEP--NVVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 460 (531)
.+..+.+-|....+.+. ++..+.-.+.+++++.+ +++++..+++...+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34445555555555444 58889899999999988 6779999999998853 24 355666777889999999999
Q ss_pred HHHHHHHHHH
Q 038190 461 YDLLPDMEEK 470 (531)
Q Consensus 461 ~~~~~~~~~~ 470 (531)
.++++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999888776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=41.85 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHcCCChHHHHHHHHHhhhCCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 412 LVDGLCKSWRLRSAWELFKKLPRYGPEPNVV-TYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
....+...|++++|...|+++.+.. +.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4567888999999999999998852 22566 8888999999999999998888765543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.051 Score=38.43 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=22.5
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.++|..++++.++..+. ++.+...+...+.+.|++++|+..|+++..
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555555544322 334444444455555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.039 Score=57.34 Aligned_cols=117 Identities=14% Similarity=-0.022 Sum_probs=77.2
Q ss_pred HHHccCCHHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChH
Q 038190 96 ALAGKKYYVNFIC-LSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFT 174 (531)
Q Consensus 96 ~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 174 (531)
.....+++++|.+ ++.. .++......++..+.+.|.++.|.++.+. . ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence 3345788888866 4421 11122337777788888888888765521 1 11234456789999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhh
Q 038190 175 EASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWED 249 (531)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 249 (531)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+.
T Consensus 670 ~A~~~~~~~----------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 670 LARDLLTDE----------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHHTTC----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhh----------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 998886544 2677899999999999999999999998764 3444445554554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.23 Score=43.20 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=81.0
Q ss_pred hhHHHHHH-HHHhc-CChhhhhcchHHHHHHHHHHHhCCCCCCccccCC---HhhHHHHHHHHhc-----CCCHHHHHHH
Q 038190 232 FVYNSLIR-VYCCA-VNWEDAKGNTSAALELHEEFVNGNGELGVICHPD---VLSYCSIINSLCK-----DVLVDKAKEL 301 (531)
Q Consensus 232 ~~~~~li~-~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~ 301 (531)
..|..++. .+... ..--.++.....|...+++..+.+ |+ ...|..+...|.+ -|+.++|.+.
T Consensus 155 L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--------P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 155 LYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--------PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 34544443 33333 222346666777888888888865 54 5678888888888 4999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 038190 302 FLDMKSRGIIPDVVVYSSLIDGYCL-MGRIDDARKLFVSIESEGCI--PDTSSYNT 354 (531)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~--p~~~~~~~ 354 (531)
|++..+.+..-+..++......++. .|+.+.+.+.+++.+..... |+....+.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999987432246677777788887 49999999999999987665 55444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.051 Score=39.41 Aligned_cols=67 Identities=13% Similarity=-0.001 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHhhhC------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRSAWELFKKLPRY------GPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+..-+-.+...+.+.|+++.|...|+...+. +-.+....+..+..++.+.|++++|+.++++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 35666778999999999999999999988763 11245778899999999999999998888776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.3 Score=38.89 Aligned_cols=130 Identities=10% Similarity=0.102 Sum_probs=77.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 038190 164 IRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCC 243 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 243 (531)
.......|+++.|.++.+++. +...|..|.......|+++-|.+.|..... +..+.-.|..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~ 72 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLV 72 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHH
Confidence 445567788888888877651 577888888888888888888888887764 3444444555
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.|+.+.-.. +-+.....+ -++.....+.-.|+++++.++|.+.. .-|. -...
T Consensus 73 tg~~e~L~k-------la~iA~~~g------------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~e------A~~~ 124 (177)
T 3mkq_B 73 TGDVNKLSK-------MQNIAQTRE------------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPL------AYAV 124 (177)
T ss_dssp HTCHHHHHH-------HHHHHHHTT------------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHH------HHHH
T ss_pred hCCHHHHHH-------HHHHHHHCc------------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHH------HHHH
Confidence 555544333 333322222 24555556667778887777774432 1111 1111
Q ss_pred HHhcCCHHHHHHHHHHH
Q 038190 324 YCLMGRIDDARKLFVSI 340 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~ 340 (531)
....|..+.|.++.+.+
T Consensus 125 A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 125 AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHh
Confidence 22356666666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.09 Score=40.76 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 038190 295 VDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG---RIDDARKLFVSIESEGCIP--DTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~g~~p--~~~~~~~li~~~~~~~~~~~a~ 369 (531)
...+.+-|.+..+.|. ++..+.-.+..++++.. +++++..+|+.+.+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455666766666654 57777777788888888 6679999999988874 23 3455666777889999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHH
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFR 395 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 395 (531)
+.++.+.+ +.|+........+.++
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHH
Confidence 99999987 4565333333333333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.065 Score=41.90 Aligned_cols=121 Identities=10% Similarity=-0.024 Sum_probs=77.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhC-CCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HhhHHHH
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRY-GPEPN-------VVTYTVMICGLCIEGGIEKAYDLLPDMEEK---IRECLKA 477 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---i~~~~~a 477 (531)
+-.=+..+...|.++.|+-+.+-+... +..|+ ..++..+.+++...|++..|...|++..+. +.+...+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444567788899999998888776541 11233 235667888999999999999999876554 1111110
Q ss_pred HHHHH--HHH--HcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhhcchhhhhc
Q 038190 478 IELLH--KMA--KRYVKPDEITVSILEELLNKDENCHECMNLLPSFLSRNQEESKL 529 (531)
Q Consensus 478 ~~~~~--~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 529 (531)
..... ... .....++.+.---+..+|.+.|++++|+.+++.+|.+...++..
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 00000 000 00122334555568999999999999999999999887776543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.12 Score=36.51 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=57.1
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 154 SPDVVTLGCLIRGLCMQGK---FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 154 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
+.+...+..+..++...++ .++|..+|++.... +|+ ++.+...+...+...|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3467778888888765554 79999999999987 553 78899999999999999999999999999863
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.1 Score=37.72 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCCcchHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 125 LNILMNCFCKMIGVSDAFVALGRILRKV------FSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 125 ~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
+..+...+.+.|++..|..+|+.+++.- -.....++..+..++.+.|+++.|+..+++....
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344444444445555554444444321 0123344555555555555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0017 Score=60.22 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=145.8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038190 87 MPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRG 166 (531)
Q Consensus 87 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 166 (531)
...|..|..+....+...+|++-|-+ .-|+..|..+|.++.+.|.+++-...+....+.. .+..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34677788887777777777665532 1255667778888888888888877776665542 344555677788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC--------------------
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-------------------- 226 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-------------------- 226 (531)
|++.++..+..+++ . . |+..-...+..-|...|.++.|.-+|..+....
T Consensus 126 yAk~~rL~elEefl----~---~----~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---G----PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HHTSCSSSTTTSTT----S---C----CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HHhhCcHHHHHHHH----c---C----CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887765543322 1 1 355555666666777777776666655442210
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
-.-++.||..+-.+|...+.+.-|.- .--.+. +.+| -...++..|...|.+++.+.+++...
T Consensus 195 KAns~ktWKeV~~ACvd~~EfrLAqi-------cGLniI---------vhad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 195 KANSTRTWKEVCFACVDGKEFRLAQM-------CGLHIV---------VHAD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp TCCSSCSHHHHTHHHHHSCTTTTTTH-------HHHHHH---------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred hcCChhHHHHHHHHHhCchHHHHHHH-------hcchhc---------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 11266788888888888877766643 111111 1111 23345666788888888888888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 038190 307 SRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESE-GCI------PDTSSYNTLINSYSKIEKVEEAL 369 (531)
Q Consensus 307 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~------p~~~~~~~li~~~~~~~~~~~a~ 369 (531)
.. -....-+|+-|.-.|++- ++++..+.++....+ ++. -....|.-++-.|.+-.+++.|.
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 43 234677788888778775 344444443332221 111 02344556666666666666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.7 Score=34.57 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=99.6
Q ss_pred hHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHh---h
Q 038190 159 TLGCLIRG--LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAF---V 233 (531)
Q Consensus 159 ~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~ 233 (531)
+...|+.+ +.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|.. .
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s-------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~N 76 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS-------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQN 76 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC-------CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhc
Confidence 33444443 44568888888888888764 15666777777777777777777777766542 2221 1
Q ss_pred HHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC
Q 038190 234 YNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD 313 (531)
Q Consensus 234 ~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 313 (531)
...++.+|.+.+ .+...+...+..+...|+-++-.+++..+.. +.+|+
T Consensus 77 lKrVi~C~~~~n-------------------------------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~ 124 (172)
T 1wy6_A 77 LKSVVECGVINN-------------------------------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVS 124 (172)
T ss_dssp THHHHHHHHHTT-------------------------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSC
T ss_pred HHHHHHHHHHhc-------------------------------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCC
Confidence 233444444332 2344556677788888888988888888654 34678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038190 314 VVVYSSLIDGYCLMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 314 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 346 (531)
+...-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 888888889999999999999999988888764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=1 Score=35.82 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=27.0
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038190 290 CKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIE 341 (531)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 341 (531)
...|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3456666666665544 145566666666666666666666665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.56 Score=34.87 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHcCCChHH---HHHHHHHhhhCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 404 LDLTVFNCLVDGLCKSWRLRS---AWELFKKLPRYGPEP--NVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
++..+--.+.+++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 577788888999999887666 889999888753 23 3344456777899999999999888887765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=5.4 Score=36.82 Aligned_cols=85 Identities=11% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Q 038190 408 VFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKR 487 (531)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~ 487 (531)
+...++.++...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+. +. .+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~----------L~--~eL 239 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTT----------LA--DDL 239 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HH--HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH--HHh
Confidence 56677888999999999999999988742 347789999999999999999999999776543 11 145
Q ss_pred CCCCCHHHHHHHHHHHhc
Q 038190 488 YVKPDEITVSILEELLNK 505 (531)
Q Consensus 488 ~~~~~~~~~~~l~~~~~~ 505 (531)
|+.|+..+-...-..+..
T Consensus 240 G~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 240 GIDPGPTLRALNERILRQ 257 (388)
T ss_dssp SCCCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 888888876655555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.84 Score=33.94 Aligned_cols=83 Identities=13% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcch---HHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 103 YVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSD---AFVALGRILRKV-FSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 103 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
+..+.+-|.+....| .++..+-..+..++.+..+... ++.+++.+.+.+ +.......-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444434 2455555555555555554443 555555555543 11122222234455666666666666
Q ss_pred HHHHHHHc
Q 038190 179 LFTKFVAF 186 (531)
Q Consensus 179 ~~~~~~~~ 186 (531)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.72 E-value=10 Score=39.16 Aligned_cols=257 Identities=10% Similarity=-0.037 Sum_probs=128.6
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHccCCcchHHHHHHHHHHCCC-------CCChhhHHHHHHHH
Q 038190 97 LAGKKYYVNFICLSERLNTIGLLPDFVSL--NILMNCFCKMIGVSDAFVALGRILRKVF-------SPDVVTLGCLIRGL 167 (531)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~~~ 167 (531)
....|+.++++.++......+-..+..+- ..+.-+....|..+++..++...+...- .+....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777777776655432111233322 2223334455555567776666554311 01111222233333
Q ss_pred HhcCC-hHHHHHHHHHHHHcCCCCCCCCcH--HhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH--HHH
Q 038190 168 CMQGK-FTEASGLFTKFVAFDCRPNVIPNV--ICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR--VYC 242 (531)
Q Consensus 168 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~ 242 (531)
+-.|. -+++.+.+..+.... . +.. .+--.|...++..|+.+....++..+.+.. +..+...+.- ++.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~---~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll 535 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--S---ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALI 535 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--C---HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHhcC--C---HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhh
Confidence 33342 245666666666531 0 011 122233444556778777777777766531 2233333333 344
Q ss_pred hcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 243 CAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSY--CSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSL 320 (531)
Q Consensus 243 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (531)
..|+.+.+.. +.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..++.....+
T Consensus 536 ~~g~~e~~~~-------li~~L~~~~-------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAVi 600 (963)
T 4ady_A 536 NYGRQELADD-------LITKMLASD-------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVI 600 (963)
T ss_dssp TTTCGGGGHH-------HHHHHHHCS-------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred hCCChHHHHH-------HHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHH
Confidence 5677766666 666665532 2222222 234456778888877777888887652 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 038190 321 IDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV-EEALSLYGEMIS 377 (531)
Q Consensus 321 l~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~ 377 (531)
.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+++.++..+..
T Consensus 601 aLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 601 ALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 334445677677777777666543 23333333333344444443 567777777764
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.64 E-value=0.017 Score=53.76 Aligned_cols=193 Identities=9% Similarity=0.013 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHH
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVAL 145 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 145 (531)
|++.+|++.|-+. -|...|..+|.+..+.|.+++.+..+.-..+. .-++.+=+.|+-+|++.+++.+-.+.+
T Consensus 68 ~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl 139 (624)
T 3lvg_A 68 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI 139 (624)
T ss_dssp SSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred CchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH
Confidence 4677777666333 35668999999999999999999988766554 345566678999999999887754433
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----------------CCCCCcHHhHHHHHHHHHhc
Q 038190 146 GRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCR----------------PNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 146 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~ 209 (531)
. .||..-...+.+-|...|.++.|.-+|..+.....- ..-..++.||..+-.+|...
T Consensus 140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~ 212 (624)
T 3lvg_A 140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG 212 (624)
T ss_dssp S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHS
T ss_pred c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCc
Confidence 1 356666677788888888888887777654322100 00014677999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHH
Q 038190 210 GFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSL 289 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 289 (531)
+.+.-|.-.--.+.-. +| -...++..|-..|.+++-+. +++.-.... ......|+.|.-.|
T Consensus 213 ~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIs-------LlEaglglE-------rAHmGmFTELaILY 273 (624)
T 3lvg_A 213 KEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELIT-------MLEAALGLE-------RAHMGMFTELAILY 273 (624)
T ss_dssp CTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTT-------THHHHTTST-------TCCHHHHHHHHHHH
T ss_pred hHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHH-------HHHHHhCCC-------chhHHHHHHHHHHH
Confidence 9888876654444322 11 12234555667777777766 555444322 23455566555555
Q ss_pred hcC
Q 038190 290 CKD 292 (531)
Q Consensus 290 ~~~ 292 (531)
++-
T Consensus 274 sKY 276 (624)
T 3lvg_A 274 SKF 276 (624)
T ss_dssp HSS
T ss_pred Hhc
Confidence 543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.52 E-value=2 Score=32.99 Aligned_cols=55 Identities=20% Similarity=0.109 Sum_probs=38.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYP 229 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 229 (531)
.+|.++|.++|+.++.. ... =...|......-.+.|++..|.+++......+..|
T Consensus 73 i~D~d~aR~vy~~a~~~--hKk---FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARAN--CKK---FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHH--CTT---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHH--hHH---HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 36778888888887764 111 25566666677777888888888888887766553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.24 E-value=2 Score=32.91 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIP 347 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p 347 (531)
++.++|.++|+.+.+.+-.. ...|....+.-.+.|++..|.+++...+..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45556666666554432222 5555555555566777777777777777666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.92 E-value=1 Score=45.37 Aligned_cols=49 Identities=10% Similarity=-0.047 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 472 RECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 472 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
++++.|+.+-++....- +.+..+|..|..+|...|+++.|+-.+..+|.
T Consensus 351 ~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 351 GDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 56666777777776543 44679999999999999999999999999985
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.31 E-value=1 Score=45.28 Aligned_cols=126 Identities=14% Similarity=0.031 Sum_probs=80.0
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHccCC-cchHHHHHHHHHH-------CCCCCCh--
Q 038190 91 NSLLGALAGKKY-YVNFICLSERLNTIGLLPDFVSL--NILMNCFCKMIG-VSDAFVALGRILR-------KVFSPDV-- 157 (531)
Q Consensus 91 ~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~~~-------~~~~~~~-- 157 (531)
..++..+...++ ++.|+.+++++.... |...++ ..++..+...++ --+|.+++.+.++ .-...+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 588999999998764 433332 233333333332 2234444444432 1111111
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 158 --------VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 158 --------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
...+.-.+.|...|+++.|+.+-++.... .|. +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPs---eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALD---SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--Cch---hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222244566789999999999999876 553 67899999999999999999999998875
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.70 E-value=2.8 Score=31.34 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=38.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|+..+--.+.+++.+..+.++- .+++.+++...+.+..-....+-.+.-++.+.|++++|.+.++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~--------------~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDE--------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHH--------------HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45555555566666666554422 3444455555443321123445556666666666666666666
Q ss_pred Hhhhc
Q 038190 518 SFLSR 522 (531)
Q Consensus 518 ~~~~~ 522 (531)
.+-..
T Consensus 103 ~lL~~ 107 (134)
T 3o48_A 103 TLFEH 107 (134)
T ss_dssp HHHTT
T ss_pred HHHhh
Confidence 65444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.66 E-value=1.3 Score=31.08 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444444444445555555555555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.59 E-value=4.3 Score=30.48 Aligned_cols=64 Identities=16% Similarity=0.012 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...+...++.+...|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4456777788888889988888888886442 467888888888999999988888777765544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.50 E-value=12 Score=35.34 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hc
Q 038190 292 DVLVDKAKELFLDMKSR-----GIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYS----KI 362 (531)
Q Consensus 292 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~----~~ 362 (531)
.|+++.|.+.+-.+.+. ....+......++..|...|+++...+.+..+....-. -......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 36788888877666542 34556777888999999999999888877766543222 1222334443332 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChHHHHHHHHHhhh--CCC
Q 038190 363 EKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFEL---DLTVFNCLVDGLCKSWRLRSAWELFKKLPR--YGP 437 (531)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~ 437 (531)
...+.... ..+.+. +....+..+-. .......|...|...|++.+|.+++..+.. .|.
T Consensus 108 ~~~d~~~~--~~~i~~---------------l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~ 170 (445)
T 4b4t_P 108 KSLDLNTR--ISVIET---------------IRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS 170 (445)
T ss_dssp CTTHHHHH--HHHHHC---------------CSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS
T ss_pred CchhHHHH--HHHHHH---------------HHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 22221111 011110 00000111111 123446788999999999999999999864 332
Q ss_pred CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCChhHH
Q 038190 438 EPN---VVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE--ITVSILEELLNKDENCHEC 512 (531)
Q Consensus 438 ~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 512 (531)
... ...+...+..|...+++.+|..+++++... .......|+. ..+...+..+...++|.+|
T Consensus 171 ~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~-------------~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 171 MEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK-------------TFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------hcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222 446667788899999999998888776433 1111222221 3455566666666666666
Q ss_pred HhhHHHh
Q 038190 513 MNLLPSF 519 (531)
Q Consensus 513 ~~~~~~~ 519 (531)
...+...
T Consensus 238 ~~~y~e~ 244 (445)
T 4b4t_P 238 AQYLQEI 244 (445)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=1.3 Score=40.95 Aligned_cols=110 Identities=12% Similarity=0.019 Sum_probs=77.3
Q ss_pred CHhhHHHHHHHHH---ccCCcchHHHHHHHHHHC--CCC-CCh------------------hhHHHHHHHHHhcCChHHH
Q 038190 121 DFVSLNILMNCFC---KMIGVSDAFVALGRILRK--VFS-PDV------------------VTLGCLIRGLCMQGKFTEA 176 (531)
Q Consensus 121 ~~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~li~~~~~~g~~~~a 176 (531)
|...|..++.... ..|+.+.|...++.++.. |.. ++. .+...++..+...|++.+|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3334555544322 347788888888877764 211 111 1223356667789999999
Q ss_pred HHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHhhHH
Q 038190 177 SGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-----RGIYPDAFVYN 235 (531)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 235 (531)
+..+..+... .| -+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+-.
T Consensus 191 ~~~l~~~~~~--~P---~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 191 IAELEALTFE--HP---YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHH--ST---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHh--CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 9999998876 45 2788999999999999999999999988754 48999877543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.52 E-value=5.6 Score=30.18 Aligned_cols=73 Identities=8% Similarity=0.043 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHH
Q 038190 438 EPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 438 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
.|+..+--.+.+++.++.+.++. .+++.+++...+.+..-....+-.|.-++.+.|++++|.+.++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di--------------~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDE--------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHH--------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45666666677777777665532 4455555555544432234455567777777777777777777
Q ss_pred Hhhhcch
Q 038190 518 SFLSRNQ 524 (531)
Q Consensus 518 ~~~~~~~ 524 (531)
.+-...+
T Consensus 102 ~lL~~eP 108 (144)
T 1y8m_A 102 TLFEHER 108 (144)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 6655433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.62 E-value=12 Score=32.98 Aligned_cols=168 Identities=12% Similarity=0.010 Sum_probs=94.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHH
Q 038190 281 SYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKL----FVSIESEGCIPDTSSYNTLI 356 (531)
Q Consensus 281 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~~~~~g~~p~~~~~~~li 356 (531)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35556666777778888887765432 224455665555443 44445567777766666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 357 NSYSKIEKVE-EALSLYGEMISMGVRPDNSCILEAAELFRTLHNTK--FELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 357 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
..+.....-+ .=..+++++. ++..+.| ..-++.....+...|.+.|++.+|...|-.-.
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai------------------~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMN------------------NWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHH------------------HHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHCCCCCchHHHHHHHHH------------------HHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 6554432111 0112222222 1222111 12378888999999999999999988775221
Q ss_pred hCCCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH---HhhHHHHHHHHHHHH
Q 038190 434 RYGPEPNVVTYTVMICGLCIE---GGIEKAYDLLPDMEEK---IRECLKAIELLHKMA 485 (531)
Q Consensus 434 ~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~---i~~~~~a~~~~~~~~ 485 (531)
.-+...+..++.-+... |...++--++-+..-. +++...|..+++...
T Consensus 162 ----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 162 ----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 11455666666666655 6665553333332222 367777777766554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.03 E-value=6.9 Score=42.20 Aligned_cols=151 Identities=11% Similarity=0.020 Sum_probs=97.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCC--------------
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSP-------------- 155 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-------------- 155 (531)
...++..+...+.++.+.++.... +.++...-.+..++...|++++|...|.+... |+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccc
Confidence 345666677778887777765543 23444445566788889999999999876521 1110
Q ss_pred ---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 156 ---------DVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 156 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
-..-|..++..+.+.+.++.+.++-...++.....+.......|..+.+.+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 11235667788888888888888777666542211100012257888899999999999999888887654
Q ss_pred CCCCHhhHHHHHHHHHhcCChh
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~ 248 (531)
. -...+..++...|..+..+
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHH
T ss_pred H--HHHHHHHHHHHHHhCCChh
Confidence 3 3455666776666665544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.07 E-value=7.8 Score=28.96 Aligned_cols=70 Identities=13% Similarity=0.018 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 401 KFELDLTVFNCLVDGLCKSWRL---RSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 401 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..|+..+--.+.+++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4456777777778888887754 568888988887542123455667778899999999998888776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.05 E-value=1.8 Score=36.97 Aligned_cols=51 Identities=10% Similarity=-0.040 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHH
Q 038190 99 GKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILR 150 (531)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 150 (531)
+.|+++++++....-++.. +.|...-..++..+|-.|+++.|.+-++...+
T Consensus 9 ~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444444444443332 33344444444444444444444444444433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.44 E-value=3.1 Score=31.01 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR 434 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (531)
.|++.+..+.+++|.+.+++..|..+|+-.+.
T Consensus 85 VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 85 VPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555555555555555555555555555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.86 E-value=22 Score=38.28 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038190 280 LSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDV----VVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTL 355 (531)
Q Consensus 280 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 355 (531)
.-|..++..+.+.+.++.+.++-....+....-+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34667777788888888887777665543211121 2567778888888888888888877776543 35666777
Q ss_pred HHHHHhcCCHHHH
Q 038190 356 INSYSKIEKVEEA 368 (531)
Q Consensus 356 i~~~~~~~~~~~a 368 (531)
+..++..|..+.-
T Consensus 978 V~~lce~~~~~~L 990 (1139)
T 4fhn_B 978 VNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCHHHH
T ss_pred HHHHHhCCChhhh
Confidence 7777777765543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.82 E-value=7.3 Score=27.40 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
+.-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+-.+.+ +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 34456677778888899999999999999999999999999999998864 23344567766643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.15 E-value=2.3 Score=33.26 Aligned_cols=22 Identities=5% Similarity=-0.067 Sum_probs=13.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH
Q 038190 284 SIINSLCKDVLVDKAKELFLDM 305 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~ 305 (531)
-+..+|.+.+++++|+.+++.+
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHCCHHHHHHHHhcC
Confidence 3556666666666666666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.12 E-value=23 Score=32.54 Aligned_cols=93 Identities=16% Similarity=0.059 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHH-
Q 038190 284 SIINSLCKDVLVDKAKELFLDMKSRGIIPD-----VVVYSSLIDGYCLMGRIDDARKLFVSIESE--GCIPDTSSYNTL- 355 (531)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l- 355 (531)
.++..|...|++.+|..++..+.+.--..| ..++..-++.|...+++.++...+...... .+.+++..-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 578899999999999999988876421212 334566677889999999999999887643 222333322221
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 038190 356 ---INSYS-KIEKVEEALSLYGEMI 376 (531)
Q Consensus 356 ---i~~~~-~~~~~~~a~~~~~~~~ 376 (531)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22445 7899999998887654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.34 E-value=12 Score=27.93 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 421 RLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 421 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
|.-+..+-++.+....+.|++....+.+.+|.+.+++.-|+++|+-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45567777788877888999999999999999999999999999887776
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.34 E-value=36 Score=31.29 Aligned_cols=168 Identities=11% Similarity=-0.078 Sum_probs=99.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC---CHhhHHHHHHHHHccCC-cchHHH----HHHHHHHCCC-CCChh
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIG-LLP---DFVSLNILMNCFCKMIG-VSDAFV----ALGRILRKVF-SPDVV 158 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~---~~~~~~~li~~~~~~g~-~~~a~~----~~~~~~~~~~-~~~~~ 158 (531)
+...|...|.+.|+.++..+++......= .-+ .......++..+....+ .+.-.+ .+++.....- -....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999888764321 111 23346677777766533 233333 3333333210 00001
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCC-CCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHhhHH
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNV-IPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR--GIYPDAFVYN 235 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~ 235 (531)
+-.-++..|...|++.+|..++.++...-...+. .--..++..-+..|...+++.++...+...... .+.+++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~- 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ- 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-
Confidence 1225789999999999999999988864222110 012335667778899999999999999887542 232333322
Q ss_pred HHHH-----HHH-hcCChhhhhcchHHH
Q 038190 236 SLIR-----VYC-CAVNWEDAKGNTSAA 257 (531)
Q Consensus 236 ~li~-----~~~-~~~~~~~a~~~~~~a 257 (531)
..++ .+. ..+++..|...+-++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2222 234 566777776644444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 531 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 0.001
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 36/246 (14%)
Query: 162 CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLD 221
L QG+ A F K V D PN + Y ++ + L + ++ +L
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLD--PN---FLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 222 MKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLS 281
A V+ +L VY + A A+EL F + +
Sbjct: 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD--------------A 273
Query: 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLF---V 338
YC++ N+L + V +A++ + + R ++L + G I++A +L+ +
Sbjct: 274 YCNLANALKEKGSVAEAEDCY-NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 339 SIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLH 398
+ E ++++ L + + K++EAL Y E I + P A+ + +
Sbjct: 333 EVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF------ADAYSNMG 380
Query: 399 NTKFEL 404
NT E+
Sbjct: 381 NTLKEM 386
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 531 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.4 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.21 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.2 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.79 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.62 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.57 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.29 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.24 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.61 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.48 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.29 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.23 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.4 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.87 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6e-21 Score=179.37 Aligned_cols=375 Identities=15% Similarity=0.049 Sum_probs=302.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|.+.|+++.+..|. +..++..+...+.+.|++++|+..|+++.+.. +-+..++..+..++.+.|++++|...
T Consensus 12 ~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 47999999999999998765 78889999999999999999999999998875 55678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG 224 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 224 (531)
+....+.... +..............+....+............. ...............+....+...+.....
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-----LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccc-----cccccccccccccccchhhhhHHHHHHhhc
Confidence 9999887543 4555555666666667777776666666554222 455666677777788888888888887776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHH
Q 038190 225 RGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLD 304 (531)
Q Consensus 225 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 304 (531)
.. +-+...+..+...+...|+++.|.. .++...... +-+..++..+...+...|++++|...++.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~-------~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 228 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIH-------HFEKAVTLD-------PNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHH-------HHHHHHHhC-------cccHHHHHHHhhhhhccccHHHHHHHHHH
Confidence 43 2256677778888888888888888 555554433 34567888999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038190 305 MKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDN 384 (531)
Q Consensus 305 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 384 (531)
....+ ..+...+..+...+.+.|++++|...|++..+.... +..+|..+...+...|++++|.+.++......
T Consensus 229 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 301 (388)
T d1w3ba_ 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC----- 301 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-----
T ss_pred hHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-----
Confidence 88764 346777888899999999999999999999887543 67788999999999999999999999887642
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCC-cHHHHHHHHHHHHHcCCHHHHHHH
Q 038190 385 SCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEP-NVVTYTVMICGLCIEGGIEKAYDL 463 (531)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 463 (531)
+.+...+..+...+...|++++|...|++..+. .| +..++..+..+|...|++++|++.
T Consensus 302 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 302 ------------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ------------------CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 237788999999999999999999999999874 44 577888899999999999999877
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCC
Q 038190 464 LPDMEEKIRECLKAIELLHKMAKRYVKPD-EITVSILEELLNKDEN 508 (531)
Q Consensus 464 ~~~~~~~i~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 508 (531)
|++..+ +.|+ ...+..++.+|.+.|+
T Consensus 362 ~~~al~-------------------l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIR-------------------ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHT-------------------TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHH-------------------hCCCCHHHHHHHHHHHHHcCC
Confidence 765442 3454 6788999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.2e-20 Score=173.50 Aligned_cols=366 Identities=12% Similarity=0.006 Sum_probs=289.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+.+.|++++|++.++++.+.. +-+..++..+..++.+.|++++|...++++++..+. +..++..+..+|...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 3456778899999999999998774 446788999999999999999999999999987543 67789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhc
Q 038190 173 FTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKG 252 (531)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 252 (531)
+++|+..+......... +...+..........+....+............. ...............+....+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-----FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred ccccccccccccccccc-----cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHH
Confidence 99999999999886322 4555666666666677777777666665554333 33334444445555555555555
Q ss_pred chHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038190 253 NTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDD 332 (531)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 332 (531)
.+....... +.+...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++
T Consensus 157 -------~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 221 (388)
T d1w3ba_ 157 -------CYLKAIETQ-------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp -------HHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred -------HHHHhhccC-------cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHH
Confidence 555554443 3456778888899999999999999999988763 2357788889999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 038190 333 ARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCL 412 (531)
Q Consensus 333 a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 412 (531)
|...+++....+.. +...+..+...+.+.|++++|...|++..+. .|+ +..++..+
T Consensus 222 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~---------------------~~~~~~~l 277 (388)
T d1w3ba_ 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPH---------------------FPDAYCNL 277 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSS---------------------CHHHHHHH
T ss_pred HHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC---------------------CHHHHHHH
Confidence 99999998887543 6777888899999999999999999998874 333 77889999
Q ss_pred HHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-
Q 038190 413 VDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKP- 491 (531)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~- 491 (531)
..++...|++++|...++..... .+.+...+..+..++...|++++|++.|++..+ ..|
T Consensus 278 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------------~~p~ 337 (388)
T d1w3ba_ 278 ANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE-------------------VFPE 337 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-------------------SCTT
T ss_pred HHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH-------------------hCCC
Confidence 99999999999999999998875 245778888999999999999998777765432 234
Q ss_pred CHHHHHHHHHHHhccCChhHHHhhHHHhhhcchh
Q 038190 492 DEITVSILEELLNKDENCHECMNLLPSFLSRNQE 525 (531)
Q Consensus 492 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 525 (531)
+..++..++.+|.+.|++++|...+++....++.
T Consensus 338 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4678889999999999999999999987765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.5e-13 Score=121.57 Aligned_cols=223 Identities=17% Similarity=0.054 Sum_probs=155.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|+.+++..|. +..+|..+..++...|++++|+..|.+..+.. +-+...+..+..++...|++++|...
T Consensus 32 ~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~ 109 (323)
T d1fcha_ 32 EGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEI 109 (323)
T ss_dssp TTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccc
Confidence 46899999999999987776 67889999999999999999999999988765 44677888888899999999999999
Q ss_pred HHHHHHCCCCCCh--------------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcC
Q 038190 145 LGRILRKVFSPDV--------------VTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDG 210 (531)
Q Consensus 145 ~~~~~~~~~~~~~--------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (531)
++.+......... ......+..+...+.+.+|...|.+........ .+..++..+...+...|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~---~~~~~~~~l~~~~~~~~ 186 (323)
T d1fcha_ 110 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS---IDPDVQCGLGVLFNLSG 186 (323)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS---CCHHHHHHHHHHHHHTT
T ss_pred hhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcc---cccccchhhHHHHHHHH
Confidence 9988876422100 001111223334455667777777766653222 25566777777777788
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHh
Q 038190 211 FVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLC 290 (531)
Q Consensus 211 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 290 (531)
++++|...|++...... -+...|..+...+...|++++|.. .|+...+.. +-+..++..+..+|.
T Consensus 187 ~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~-------~~~~al~~~-------p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 187 EYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA-------AYRRALELQ-------PGYIRSRYNLGISCI 251 (323)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHhhhhccccccccccc-ccccchhhhhhcccccccchhHHH-------HHHHHHHHh-------hccHHHHHHHHHHHH
Confidence 88888888877765422 245667777777777777777777 444433322 234556777777777
Q ss_pred cCCCHHHHHHHHHHHHh
Q 038190 291 KDVLVDKAKELFLDMKS 307 (531)
Q Consensus 291 ~~~~~~~a~~~~~~~~~ 307 (531)
+.|++++|...|++..+
T Consensus 252 ~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777777655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.3e-12 Score=118.40 Aligned_cols=235 Identities=13% Similarity=0.011 Sum_probs=170.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
-.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|+++.|...|+++++..+. +...+..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence 345667889999999999999999875 456789999999999999999999999999987643 678888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCC----------CcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHhhHHHHHH
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVI----------PNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG-IYPDAFVYNSLIR 239 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~ 239 (531)
|++++|.+.+++........... .+.......+..+...+.+.+|...|.+..+.. -..+...+..+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 99999999999988753211000 000011112223344556777777777765432 2235566777777
Q ss_pred HHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 038190 240 VYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSS 319 (531)
Q Consensus 240 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (531)
.+...|++++|.. .++...... +-+..+|..+..++...|++++|.+.|++..+.. +-+..++..
T Consensus 181 ~~~~~~~~~~A~~-------~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 245 (323)
T d1fcha_ 181 LFNLSGEYDKAVD-------CFTAALSVR-------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 245 (323)
T ss_dssp HHHHTTCHHHHHH-------HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHhhhhc-------ccccccccc-------cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHH
Confidence 7888888887777 555544433 3356677788888888888888888888877652 225667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 038190 320 LIDGYCLMGRIDDARKLFVSIES 342 (531)
Q Consensus 320 ll~~~~~~g~~~~a~~~~~~~~~ 342 (531)
+..+|.+.|++++|...|++.++
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.2e-10 Score=106.70 Aligned_cols=312 Identities=10% Similarity=-0.034 Sum_probs=202.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCCCC--cHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhHH
Q 038190 163 LIRGLCMQGKFTEASGLFTKFVAFDCRPNVIP--NVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVYN 235 (531)
Q Consensus 163 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~ 235 (531)
....+...|++++|+.++++.... .|...+ ...++..+...|...|++++|...|++..+. +..+ ....+.
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 345566777777777777777664 222111 1235666677777778888877777766542 1111 123344
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CC
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRG----II 311 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~ 311 (531)
.+...+...|++..+...+..++.+........ .......+..+...+...|+++.+...+....... ..
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch------hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 555667778888888887777666655433222 11123456667788899999999999998877642 22
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 038190 312 PDVVVYSSLIDGYCLMGRIDDARKLFVSIESE----GCIP--DTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNS 385 (531)
Q Consensus 312 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 385 (531)
.....+..+...+...+++..+...+.+.... +..+ ....+..+...+...|+++.|...++.........
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 246 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--- 246 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT---
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc---
Confidence 23455666677788899999999888876542 1111 12345566777889999999999988765432211
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhh----CCCCCc-HHHHHHHHHHHHHcCCHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPR----YGPEPN-VVTYTVMICGLCIEGGIEKA 460 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A 460 (531)
.......+..+..++...|++++|...+++... .+..|+ ...+..+..+|...|++++|
T Consensus 247 ----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 247 ----------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp ----------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 122445677789999999999999999998864 233443 45677888999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHhccCChhHHHh
Q 038190 461 YDLLPDMEEKIRECLKAIELLHKMAKRYVK----PDEITVSILEELLNKDENCHECMN 514 (531)
Q Consensus 461 ~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~ 514 (531)
++.+++..+ +...+ |.. -....+..++..+...|+.+++..
T Consensus 311 ~~~l~~Al~----------l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 311 QRVLLDALK----------LANRT---GFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHH----------HHHHH---CCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHH----------Hhhhc---CcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 998876443 32222 221 122345556677777777776654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.8e-09 Score=98.55 Aligned_cols=279 Identities=8% Similarity=-0.109 Sum_probs=186.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC-----CChhhHHH
Q 038190 92 SLLGALAGKKYYVNFICLSERLNTIGLLPD----FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS-----PDVVTLGC 162 (531)
Q Consensus 92 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 162 (531)
.....+...|++++|+.++++..+.....+ ..++..+..++...|++++|...|+++.+.... .....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 334556678888888888888876531111 235666777788888888888888877653211 11235556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC----CCCCCHhhHH
Q 038190 163 LIRGLCMQGKFTEASGLFTKFVAFD---CRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR----GIYPDAFVYN 235 (531)
Q Consensus 163 li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~ 235 (531)
+...+...|++..+...+.+..... ..+........+..+...+...|+++.+...+...... +.......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6777888899999888887765421 11111112235566777888899999999988877643 2222334455
Q ss_pred HHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---
Q 038190 236 SLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIP--- 312 (531)
Q Consensus 236 ~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 312 (531)
.....+...+....+...+.++..++...... .......+......+...|+++.|...++...+.....
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYH-------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-------CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 56666777788887777665555544332111 11123456667778889999999999998876553222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIES----EGCIPD-TSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
....+..+...+...|++++|...++.... .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 244566678889999999999999998763 233333 34677788899999999999999987654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=5e-09 Score=93.41 Aligned_cols=219 Identities=7% Similarity=-0.006 Sum_probs=104.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI-GVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
|+.+...+.+.+.+++|+++++++++.. +-+..+|+....++...| ++++|+..++.+++..+. +..+|+.+..++.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 3333334444555555555555555543 333445555555555443 355555555555554322 4455555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
+.|++++|+..++++... .|. +..+|..+...+...|++++|+..|+.+.+.... +...|+.+...+.+.+...
T Consensus 124 ~l~~~~eAl~~~~kal~~--dp~---n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQ--DAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHTCCTTHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred hhccHHHHHHHHhhhhhh--hhc---chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 555555555555555554 332 4555555555555555555555555555553222 3444444444444444332
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGII-PDVVVYSSLIDGYC 325 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~ 325 (531)
.. ..+++|++.+....... +.+...|..+...+.. ...+++.+.++...+.... .+...+..+...|.
T Consensus 198 ~~-~~~~~ai~~~~~al~~~-------P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 198 DR-AVLEREVQYTLEMIKLV-------PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp SH-HHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hh-hhhHHhHHHHHHHHHhC-------CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 21 12333444555444433 2244445544444333 3345555555555443211 13344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=6.9e-09 Score=92.52 Aligned_cols=131 Identities=8% Similarity=-0.023 Sum_probs=75.5
Q ss_pred hHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCCCCcHHhHHHH
Q 038190 124 SLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG-KFTEASGLFTKFVAFDCRPNVIPNVICYASI 202 (531)
Q Consensus 124 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (531)
+++.+...+.+.+.+++|+.+++++++..+. +..+|+....++...| ++++|+..++..... .|. +..+|+.+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~---~~~a~~~~ 118 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---NYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT---CHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHh---hhhHHHHH
Confidence 4555555555666666666666666665433 4556666666665554 366666666666554 332 55666666
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 203 IDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
...+.+.|++++|+..++++.+.... +...|..+...+...|++++|+. .++.+...+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~-------~~~~al~~~ 176 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQ-------YVDQLLKED 176 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHH-------HHHHHHHHC
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHC
Confidence 66666666666666666666553221 45555555555555555555555 555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=1.7e-08 Score=89.78 Aligned_cols=197 Identities=12% Similarity=0.065 Sum_probs=151.3
Q ss_pred cCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038190 244 AVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDG 323 (531)
Q Consensus 244 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 323 (531)
.+....+....+++..+|+...... .+.+...|...+......|+++.|..+|+.+.+.........|...+..
T Consensus 70 ~~~~~~~~~~~~~a~~i~~ral~~~------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~ 143 (308)
T d2onda1 70 KGDMNNAKLFSDEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 143 (308)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH
T ss_pred HHHHhhcccchHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444445556667777888887654 3456667888888999999999999999999876443345678899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCC
Q 038190 324 YCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN-SYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKF 402 (531)
Q Consensus 324 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 402 (531)
+.+.|+++.|.++|+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .|
T Consensus 144 ~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p-------------------- 200 (308)
T d2onda1 144 ARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YG-------------------- 200 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HT--------------------
T ss_pred HHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hh--------------------
Confidence 99999999999999999987644 3334433333 344568899999999988774 22
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCC-CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 403 ELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYG-PEPN--VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+...|...++.+...|+++.|..+|++..... ..|. ...|...+.--...|+.+.+.++++++.+.
T Consensus 201 -~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 201 -DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp -TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 278899999999999999999999999998742 3443 457888888888899999998888776554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=2.8e-08 Score=88.36 Aligned_cols=84 Identities=8% Similarity=0.134 Sum_probs=46.3
Q ss_pred cchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHH
Q 038190 138 VSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRV 217 (531)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (531)
.+.|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++... .|. ....+|...+..+.+.|+.+.|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~--~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI--DPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSS--CTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHHcCChHHHHH
Confidence 3555566666655433334455555566666666666666666666543 211 013345666666666666666666
Q ss_pred HHHHHhhC
Q 038190 218 LFLDMKGR 225 (531)
Q Consensus 218 ~~~~m~~~ 225 (531)
+|+.+.+.
T Consensus 156 i~~~al~~ 163 (308)
T d2onda1 156 IFKKARED 163 (308)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 66665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=4.7e-09 Score=94.91 Aligned_cols=248 Identities=8% Similarity=-0.046 Sum_probs=157.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----------HccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038190 102 YYVNFICLSERLNTIGLLPDFVSLNILMNCF----------CKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQG 171 (531)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 171 (531)
..++|++++++.++.. |-+...|+..-..+ ...|++++|+..++.+++..+. +...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence 3466777777666553 22233343322222 2234466777778877776433 6666776766666655
Q ss_pred --ChHHHHHHHHHHHHcCCCCCCCCcHHhHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChh
Q 038190 172 --KFTEASGLFTKFVAFDCRPNVIPNVICYA-SIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWE 248 (531)
Q Consensus 172 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 248 (531)
++++|+..++++... .| ++...+. .....+...+.++.|+..++.+.+.... +...|..+...+...|+++
T Consensus 122 ~~~~~~a~~~~~~al~~--~~---~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 122 EPNWARELELCARFLEA--DE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp SCCHHHHHHHHHHHHHH--CT---TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhh--Cc---hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHH
Confidence 367888888887775 33 2455544 3445666778888888888877766433 6677777778888888888
Q ss_pred hhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 038190 249 DAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMG 328 (531)
Q Consensus 249 ~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 328 (531)
+|...+..+++++..- ......+...+..+++...+....... +++...+..+...+...|
T Consensus 196 ~A~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~ 256 (334)
T d1dcea1 196 DSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQ 256 (334)
T ss_dssp CSSSCCSSCHHHHHHH------------------HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHhHHhHHHH------------------HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHh
Confidence 8888666666654321 112223344555666777776666553 234445555666677778
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 329 RIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 329 ~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
+.++|...+.+.....+. +...|..+..+|...|+.++|.+.++...+
T Consensus 257 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 257 SELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888877765322 456667777788888888888888888776
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=5.8e-10 Score=101.03 Aligned_cols=264 Identities=6% Similarity=-0.069 Sum_probs=188.5
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH---H-------HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGA---L-------AGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMI 136 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~-------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 136 (531)
..++|+++++.+++.+|. +...|+..-.. + ...|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 458999999999997766 55666543333 2 23345789999999998775 556778888887777765
Q ss_pred --CcchHHHHHHHHHHCCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChh
Q 038190 137 --GVSDAFVALGRILRKVFSPDVVTLG-CLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVN 213 (531)
Q Consensus 137 --~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (531)
++++|...+..++...+. +...+. .....+...+.+++|+..++.++.. .|. +..+|+.+...+.+.|+++
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~---~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFS---NYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCC---CHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCC---CHHHHHHHHHHHHHhcCHH
Confidence 478999999999887533 455554 4456777889999999999998876 443 7889999999999999998
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCC
Q 038190 214 KVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDV 293 (531)
Q Consensus 214 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 293 (531)
+|...+...... ... .......+...+..+++.. .+....... +++...+..+...+...+
T Consensus 196 ~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~-------~~~~~l~~~-------~~~~~~~~~l~~~~~~~~ 256 (334)
T d1dcea1 196 DSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAW-------FYHRWLLGR-------AEPLFRCELSVEKSTVLQ 256 (334)
T ss_dssp CSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHH-------HHHHHHHSC-------CCCSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHH-------HHHHHHHhC-------cchhhHHHHHHHHHHHHh
Confidence 886655543332 111 1223334455566666666 666655554 344555666777788889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPD-TSSYNTLINSYS 360 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~ 360 (531)
+.++|...+.+..+.. +.+..++..+...|...|++++|.+.|+++.+.. |+ ...|..+...+.
T Consensus 257 ~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 257 SELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 9999999998887663 2245677788888999999999999999999873 43 445555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=1.7e-08 Score=87.39 Aligned_cols=152 Identities=11% Similarity=-0.125 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 67 ELNDALCFFNYMIHMQPTP---FMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.+.|+.-++++....... ...+|..+...|.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 5677777777777643221 23467777888999999999999999998875 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038190 144 ALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMK 223 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 223 (531)
.|+++++..+. +..++..+..+|...|++++|+..|++..+. .|. +......+...+.+.+..+.+..+.....
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPN---DPFRSLWLYLAEQKLDEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccc---cHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 99999987543 5678888999999999999999999999876 332 45554445555566666666655555555
Q ss_pred hC
Q 038190 224 GR 225 (531)
Q Consensus 224 ~~ 225 (531)
..
T Consensus 167 ~~ 168 (259)
T d1xnfa_ 167 KS 168 (259)
T ss_dssp HS
T ss_pred cc
Confidence 43
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=9.8e-09 Score=88.97 Aligned_cols=218 Identities=14% Similarity=-0.008 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038190 102 YYVNFICLSERLNTIGLLP---DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASG 178 (531)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 178 (531)
+.+.++.-+++........ ...+|..+..+|.+.|+++.|...|++.++..+. +..+|..+..+|...|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 4556666667776543211 2346777888999999999999999999988644 77899999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHH
Q 038190 179 LFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAAL 258 (531)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~ 258 (531)
.|++.... .|+ +..++..+..+|...|++++|...|+...+... .+......+..++.+.+..+....
T Consensus 93 ~~~~al~~--~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~------ 160 (259)
T d1xnfa_ 93 AFDSVLEL--DPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEV------ 160 (259)
T ss_dssp HHHHHHHH--CTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHH------
T ss_pred hhhHHHHH--Hhh---hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHH------
Confidence 99999987 443 677899999999999999999999999887532 234433333334444443333322
Q ss_pred HHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHH----HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038190 259 ELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVD----KAKELFLDMKSRGIIP-DVVVYSSLIDGYCLMGRIDDA 333 (531)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 333 (531)
+........ ++...++ ++..+....... .+...+...... .| ...+|..+...|...|++++|
T Consensus 161 -~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A 228 (259)
T d1xnfa_ 161 -LKQHFEKSD--------KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSA 228 (259)
T ss_dssp -HHHHHHHSC--------CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHhhccc--------hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHH
Confidence 334433332 2222222 233332222222 111111111110 11 234566677888889999999
Q ss_pred HHHHHHHHhcC
Q 038190 334 RKLFVSIESEG 344 (531)
Q Consensus 334 ~~~~~~~~~~g 344 (531)
.+.|+..+...
T Consensus 229 ~~~~~~al~~~ 239 (259)
T d1xnfa_ 229 TALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHcC
Confidence 99999888764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=1.2e-07 Score=83.35 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHH-hcCChhhhhcchHHHHHHHHHHHhCCCCC
Q 038190 198 CYASIIDGLCKDGFVNKVRVLFLDMKGR----GI-YPDAFVYNSLIRVYC-CAVNWEDAKGNTSAALELHEEFVNGNGEL 271 (531)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 271 (531)
+|..+..+|.+.|++++|...+++..+. |- .....++..+...|. ..|++++|...+.+|++++.....
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~----- 153 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS----- 153 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc-----
Confidence 4555555555566666665555544321 10 001233444444553 458888888877777776553211
Q ss_pred CccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038190 272 GVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPD-----V-VVYSSLIDGYCLMGRIDDARKLFVSIESEGC 345 (531)
Q Consensus 272 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 345 (531)
..--..++..+...+...|++++|..+|+++........ . ..+...+..+...|+++.|...+++..+..+
T Consensus 154 ---~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 154 ---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred ---hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 111245678889999999999999999999887532211 1 2234445567788999999999999877632
Q ss_pred C-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHH
Q 038190 346 I-PD---TSSYNTLINSYSK--IEKVEEALSLYGEM 375 (531)
Q Consensus 346 ~-p~---~~~~~~li~~~~~--~~~~~~a~~~~~~~ 375 (531)
. ++ ......++.++.. .+.+++|+..|+.+
T Consensus 231 ~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 11 2234556666654 24567777776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.1e-06 Score=71.37 Aligned_cols=141 Identities=11% Similarity=-0.121 Sum_probs=106.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLC 168 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 168 (531)
.|+. ...+...|+++.|++.|+++. +|+..+|..+..++...|+++.|+..|++.++..+. +...|..+..+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHH
Confidence 3443 445678899999999988642 677888889999999999999999999999988644 6778888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCC----------CC-cHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHH
Q 038190 169 MQGKFTEASGLFTKFVAFDCRPNV----------IP-NVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYN 235 (531)
Q Consensus 169 ~~g~~~~a~~~~~~~~~~~~~~~~----------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 235 (531)
+.|++++|+..|++.......... .. ...++..+..++.+.|++++|.+.|.........+......
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~ 159 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKID 159 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHH
Confidence 999999999999988753211100 00 13456677888999999999999999988765554333333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.6e-06 Score=75.83 Aligned_cols=207 Identities=12% Similarity=-0.022 Sum_probs=141.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCcccc
Q 038190 202 IIDGLCKDGFVNKVRVLFLDMKGR----GIYP-DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICH 276 (531)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (531)
....|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...+..+++++..... ..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~--------~~ 114 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--------FR 114 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc--------ch
Confidence 345677888888888888877542 1111 2357888889999999999999988888888765422 22
Q ss_pred CCHhhHHHHHHHHh-cCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-
Q 038190 277 PDVLSYCSIINSLC-KDVLVDKAKELFLDMKSR----GIIP-DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDT- 349 (531)
Q Consensus 277 ~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~- 349 (531)
....++..+...|. ..|++++|.+.|++..+. +..+ -..++..+...|...|++++|...|+++.........
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~ 194 (290)
T d1qqea_ 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (290)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence 33456677777774 469999999999887642 2111 1345788889999999999999999998875332111
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CCCh
Q 038190 350 -----SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK--SWRL 422 (531)
Q Consensus 350 -----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~ 422 (531)
..+...+..+...|+++.|...+++..+...... ..........++.++.. .+.+
T Consensus 195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~------------------~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA------------------DSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------------------------HHHHHHHHHHHHTTCTTTH
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc------------------chHHHHHHHHHHHHHHhcCHHHH
Confidence 2234455677788999999999998866421110 00123355667777665 3568
Q ss_pred HHHHHHHHHhhh
Q 038190 423 RSAWELFKKLPR 434 (531)
Q Consensus 423 ~~A~~~~~~~~~ 434 (531)
++|+..|+++.+
T Consensus 257 ~eai~~y~~~~~ 268 (290)
T d1qqea_ 257 SEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHHHHHhh
Confidence 888888877664
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=7.7e-07 Score=65.64 Aligned_cols=104 Identities=9% Similarity=-0.060 Sum_probs=61.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
...+.+.|++++|+..|.+.++.. +-+...|..+..++...|++++|+..++.+++..+. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 444556666666666666666554 445556666666666666666666666666665432 555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcHHhHHHHHH
Q 038190 174 TEASGLFTKFVAFDCRPNVIPNVICYASIID 204 (531)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 204 (531)
++|+..|++.... .|+ +...+..+-.
T Consensus 88 ~~A~~~~~~a~~~--~p~---~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKH--EAN---NPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTT--CTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCC---CHHHHHHHHH
Confidence 6666666666654 332 4444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.3e-06 Score=69.44 Aligned_cols=117 Identities=10% Similarity=-0.086 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|+++.|++.|+.+ ..|+..+|..+...+...|++++|++.|++.++.. +-+...|..+..++.+.|++++|...
T Consensus 18 ~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 18 KKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp TTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 46999999999876 44677889999999999999999999999999886 56788999999999999999999999
Q ss_pred HHHHHHCCCC--------------C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 145 LGRILRKVFS--------------P-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 145 ~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
|++.+..... + ...++..+..++.+.|++++|.+.|+.....
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9998764211 0 1245566788899999999999999998875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.9e-06 Score=63.50 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=51.1
Q ss_pred HHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhc
Q 038190 130 NCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKD 209 (531)
Q Consensus 130 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (531)
..+.+.|++++|...|+++++..+. +...|..+..+|...|++++|+..+++.... .|+ +...|..+..++...
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~---~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPD---WGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHh--ccc---hhhHHHHHHHHHHHc
Confidence 4445556666666666666555322 4455555566666666666666666665554 332 455555666666666
Q ss_pred CChhHHHHHHHHHhhC
Q 038190 210 GFVNKVRVLFLDMKGR 225 (531)
Q Consensus 210 ~~~~~a~~~~~~m~~~ 225 (531)
|++++|+..|+...+.
T Consensus 85 ~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.4e-06 Score=67.07 Aligned_cols=91 Identities=12% Similarity=-0.024 Sum_probs=71.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038190 94 LGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKF 173 (531)
Q Consensus 94 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 173 (531)
...|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+++++..+. +..+|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 456778888888888888888775 556777888888888888888888888888877533 667788888888888888
Q ss_pred HHHHHHHHHHHHc
Q 038190 174 TEASGLFTKFVAF 186 (531)
Q Consensus 174 ~~a~~~~~~~~~~ 186 (531)
++|+..+++....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888888776
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=2e-06 Score=67.44 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=85.5
Q ss_pred CcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHH
Q 038190 64 GEVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFV 143 (531)
Q Consensus 64 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 143 (531)
+.|++++|+..|+.+++.+|. +...|..+...|...|++++|+..|+++++.. +-+..+|..+..++...|++++|..
T Consensus 22 ~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 22 KAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 467999999999999998877 88899999999999999999999999999876 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHH
Q 038190 144 ALGRILRKVFSPDVVTLGCLIR 165 (531)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~li~ 165 (531)
.+++..+..+. +...+..+..
T Consensus 100 ~~~~a~~~~p~-~~~~~~~l~~ 120 (159)
T d1a17a_ 100 DYETVVKVKPH-DKDAKMKYQE 120 (159)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHH
Confidence 99999987533 4445444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.38 E-value=1.9e-06 Score=70.70 Aligned_cols=100 Identities=16% Similarity=0.005 Sum_probs=75.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHH
Q 038190 85 PFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLI 164 (531)
Q Consensus 85 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 164 (531)
|+...+......+.+.|++++|+..|.+.++.. +.+..+|..+..+|.+.|+++.|+..|+.+++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 566666677777888888888888888877765 556777778888888888888888888888776432 566777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 038190 165 RGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 165 ~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+|...|++++|+..|++....
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888777653
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=4.6e-06 Score=68.34 Aligned_cols=97 Identities=9% Similarity=0.017 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038190 313 DVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAE 392 (531)
Q Consensus 313 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~ 392 (531)
+...+......|.+.|++++|...|++.++..+. +...|..+..+|.+.|++++|+..|+...+ +.|+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~--------- 70 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQ--------- 70 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTT---------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCC---------
Confidence 3333444444455555555555555554444322 444455555555555555555555555443 2222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 038190 393 LFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLP 433 (531)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (531)
+..+|..+..+|...|++++|...|+++.
T Consensus 71 ------------~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 71 ------------SVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555555555555555555555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.33 E-value=0.00063 Score=57.85 Aligned_cols=61 Identities=8% Similarity=-0.154 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCI----EGGIEKAYDLLPDME 468 (531)
Q Consensus 405 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 468 (531)
+..+...|...|.. ..++++|..+|++..+.| ++..+..|...|.. ..+.++|.+.|++..
T Consensus 177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 245 (265)
T ss_dssp CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 44444445544443 446666777776666654 34444455555543 224555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.29 E-value=0.00077 Score=57.26 Aligned_cols=114 Identities=19% Similarity=0.058 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 038190 293 VLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCL----MGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEK 364 (531)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~ 364 (531)
.....+...+...... .+...+..|...|.. ..+...+...++...+.| +......+...|.. ..+
T Consensus 124 ~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC
T ss_pred chhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccc
Confidence 3445555555555443 244555556555554 345666666666666654 44444444444443 345
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCCC
Q 038190 365 VEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYGP 437 (531)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 437 (531)
.+.|+.+|....+.| ++..+..|...|.+ ..+.++|.++|++..+.|.
T Consensus 198 ~~~A~~~~~~aa~~g-------------------------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 198 FKEALARYSKACELE-------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhhHhhhhccc-------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 666666666655544 56677777777765 3478888888888877653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=2.1e-06 Score=62.57 Aligned_cols=89 Identities=9% Similarity=-0.148 Sum_probs=50.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038190 93 LLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQGK 172 (531)
Q Consensus 93 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 172 (531)
+...+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|...|+++++..+. +..++..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 3444555666666666666665543 334555566666666666666666666666555422 45555556666666666
Q ss_pred hHHHHHHHHHH
Q 038190 173 FTEASGLFTKF 183 (531)
Q Consensus 173 ~~~a~~~~~~~ 183 (531)
+++|++.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00037 Score=60.84 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038190 282 YCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK 361 (531)
Q Consensus 282 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 361 (531)
|..++-.|.+.|+++.|..+. .+. .++..-...++..+.+.++.+...++.....+. ++...+.++.....
T Consensus 177 ~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~ 247 (336)
T d1b89a_ 177 WAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSP 247 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGG
T ss_pred hHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhcc
Confidence 344555566666666665443 222 334444556677778888887777777766654 33445667777776
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 362 IEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 362 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.-++...++.+++ .+- +......++...+.+ +..+.++|...|...++++.-.+..
T Consensus 248 ~~d~~r~V~~~~k---~~~------l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 248 RLDHTRAVNYFSK---VKQ------LPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp GCCHHHHHHHHHH---TTC------TTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHh---cCC------cHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 6777766666543 221 223344455544444 3456777777777777765443333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=3.3e-06 Score=61.53 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=76.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|...|+++++..|. +..+|..+..++.+.|++++|+..|++..+.. +.+..++..+..+|...|++++|.+.
T Consensus 29 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~~ 106 (112)
T d1hxia_ 29 LANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 106 (112)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHHH
Confidence 46999999999999998876 78999999999999999999999999998876 55788999999999999999999999
Q ss_pred HHHHH
Q 038190 145 LGRIL 149 (531)
Q Consensus 145 ~~~~~ 149 (531)
+++.+
T Consensus 107 l~~~l 111 (112)
T d1hxia_ 107 LRAWL 111 (112)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=0.0015 Score=56.93 Aligned_cols=99 Identities=9% Similarity=0.104 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Q 038190 409 FNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRY 488 (531)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~ 488 (531)
....+..+.+.++.+...++..-..+. .| ...+.++......-+..+.++.+++- ++..-...+++.....+
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~----~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKV----KQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHT----TCTTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhc----CCcHHHHHHHHHHHHcC
Confidence 344556677777777766666666553 23 44567777777777777777766542 34445556666655544
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHhhHHH
Q 038190 489 VKPDEITVSILEELLNKDENCHECMNLLPS 518 (531)
Q Consensus 489 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 518 (531)
+..+.+++...|...++++.-+..++.
T Consensus 279 ---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 456889999999999997766665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=7.4e-06 Score=60.36 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=63.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC---cchHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIG---VSDAFVALGRILRKVFSPD-VVTLGCLIRG 166 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 166 (531)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+|++++.....|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666667777777777777777765 5566777777777765443 3457777777766543333 2356667777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 038190 167 LCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~ 186 (531)
|.+.|++++|++.|++++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=9e-06 Score=59.91 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038190 318 SSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKV---EEALSLYGEMISMGVRPDNSCILEAAELF 394 (531)
Q Consensus 318 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~a~~~~ 394 (531)
..+++.+...+++++|++.|++.+..++. +..++..+..++.+.++. ++|+.+|+++...+..|+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~----------- 70 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE----------- 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-----------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-----------
Confidence 34556666777777777777777776543 566666666666654443 346666666554321110
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCc
Q 038190 395 RTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPN 440 (531)
Q Consensus 395 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 440 (531)
...+|..|..+|.+.|++++|.+.|+++++. .|+
T Consensus 71 ----------~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~--~P~ 104 (122)
T d1nzna_ 71 ----------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 104 (122)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred ----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--CcC
Confidence 1235666777777777777777777777763 454
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.1e-05 Score=76.22 Aligned_cols=212 Identities=9% Similarity=-0.082 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHH
Q 038190 140 DAFVALGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLF 219 (531)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 219 (531)
+|.+.|+++.+.... ....+..+..++...|++++| |++++.. +|. ....++... ......+..+.+.+
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~---~a~~~~~e~--~Lw~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLE---YALDKKVEQ--DLWNHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHH---HHHHHTHHH--HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--Chh---hHHHHhHHH--HHHHHHHHHHHHHH
Confidence 456667666654211 233445555666666666654 5555543 110 011111111 11111244566666
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHH
Q 038190 220 LDMKGRGIYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAK 299 (531)
Q Consensus 220 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 299 (531)
+...+....++..-....+..+ ...+.+.|+.++..+....... +++...+..+...+.+.|+.+.|.
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~-----l~~a~~~Y~~ai~~l~~~~~l~-------~~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLF-----LEAASGFYTQLLQELCTVFNVD-------LPCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHH-----HHHHHHHHHHHHHHHTC------------------------------------
T ss_pred HHhcccccCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCC-------hhhHHHHHHhHHHHHhCCCHHHHH
Confidence 6665543333333222222222 2234454555544544433322 345556777788888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038190 300 ELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMISM 378 (531)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 378 (531)
..+....... ...++..+...+...|++++|...|++..+..+. +...|+.+...|...|+..+|+..|.+....
T Consensus 141 ~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 141 KPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp --CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7776655431 1356677788888999999999999999887544 6688999999999999999999999888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=7.8e-05 Score=58.69 Aligned_cols=110 Identities=15% Similarity=0.042 Sum_probs=68.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCC--------------CHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLP--------------DFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD 156 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 156 (531)
......+.+.|++++|+..|.+.++.-... -..+|+.+..+|.+.|+++.|+..++.+++..+. +
T Consensus 17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~ 95 (170)
T d1p5qa1 17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-N 95 (170)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-c
Confidence 344455666677777777776665431000 0134555666777777777777777777776533 6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHH
Q 038190 157 VVTLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGL 206 (531)
Q Consensus 157 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (531)
+.++..+..+|...|++++|+..|++.... .|+ +..+...+....
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~---n~~~~~~l~~~~ 140 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQL--YPN---NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSS---CHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC---CHHHHHHHHHHH
Confidence 667777777777777777777777777765 332 444444444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=0.00025 Score=55.61 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.+|+.+..+|.+.|++++|+..++..++.. |+ ++.+|..++.+|...|++++|...|
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~---------------------~~~a~~~~g~~~~~~g~~~~A~~~~ 119 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD--SN---------------------NEKGLSRRGEAHLAVNDFELARADF 119 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc--cc---------------------chhhhHHHHHHHHHhhhHHHHHHHH
Confidence 356678888999999999999999988743 33 7889999999999999999999999
Q ss_pred HHhhhCCCCC-cHHHHHHHHHHHHHc
Q 038190 430 KKLPRYGPEP-NVVTYTVMICGLCIE 454 (531)
Q Consensus 430 ~~~~~~g~~p-~~~~~~~l~~~~~~~ 454 (531)
++..+. .| +......+..+..+.
T Consensus 120 ~~al~l--~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 120 QKVLQL--YPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHH--CSSCHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 999884 45 444544444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=3.7e-05 Score=57.26 Aligned_cols=103 Identities=16% Similarity=0.090 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 038190 160 LGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDAFVYNSLIR 239 (531)
Q Consensus 160 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 239 (531)
+..+...+.+.|++++|+..|++.+.. .|. +..+|..+..+|.+.|++++|+..++++.+... .+...+..+..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~-~~~~~~~~~a~ 80 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 445677888899999999999998886 443 788888899999999999999999988775311 13344556666
Q ss_pred HHHhcCChhhhhcchHHHHHHHHHHHhCC
Q 038190 240 VYCCAVNWEDAKGNTSAALELHEEFVNGN 268 (531)
Q Consensus 240 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 268 (531)
+|...|+...+...+++|++.|+......
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777887766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=0.00013 Score=54.14 Aligned_cols=95 Identities=7% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCC------hhhHHHH
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPD------VVTLGCL 163 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 163 (531)
+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|+++.|...++.+++..+... ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4455666777777777777777777664 44566777777777777777777777777665422110 1244455
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 038190 164 IRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 164 i~~~~~~g~~~~a~~~~~~~~~ 185 (531)
...+...+++++|+..|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5566666677777777766654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=0.00019 Score=55.17 Aligned_cols=111 Identities=9% Similarity=-0.042 Sum_probs=59.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038190 90 FNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCM 169 (531)
Q Consensus 90 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 169 (531)
+..-...+.+.|++.+|+..|.+.+..-..... ..+......... ....+|..+..+|.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~--------------~~~~~~~~~~~~------~~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--------------WDDQILLDKKKN------IEISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--------------CCCHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh--------------hhhHHHHHhhhh------HHHHHHhhHHHHHHH
Confidence 344455677788888888888887653211000 000000000000 012345555666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 170 QGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 170 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.|++++|+..+++.+.. .|. +..+|..+..++...|++++|+..|+...+.
T Consensus 80 l~~~~~Al~~~~~al~~--~p~---~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKI--DKN---NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TTCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccc--cch---hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666554 332 5556666666666666666666666666554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00054 Score=54.00 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038190 406 LTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMA 485 (531)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~ 485 (531)
...+..++.++...|++++|...++++++.. +-+...|..++.+|.+.|+..+|++.|+++.+. +. .
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~----------L~--~ 133 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTT----------LA--D 133 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HH--H
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HH--H
Confidence 4578889999999999999999999999853 337889999999999999999999999876442 21 2
Q ss_pred HcCCCCCHHHHHHHHHHHh
Q 038190 486 KRYVKPDEITVSILEELLN 504 (531)
Q Consensus 486 ~~~~~~~~~~~~~l~~~~~ 504 (531)
+.|+.|+..+....-..+.
T Consensus 134 eLG~~P~~~l~~l~~~il~ 152 (179)
T d2ff4a2 134 DLGIDPGPTLRALNERILR 152 (179)
T ss_dssp HHSCCCCHHHHHHHHHHHT
T ss_pred HhCCCcCHHHHHHHHHHHh
Confidence 4589999877555444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.79 E-value=0.00032 Score=55.34 Aligned_cols=124 Identities=8% Similarity=-0.063 Sum_probs=88.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 038190 91 NSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVTLGCLIRGLCMQ 170 (531)
Q Consensus 91 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 170 (531)
..........|++++|.+.|.+.+... +.... .......-+...-..+... ....+..+...+...
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 334456778899999999999987642 11110 0111111122222222211 345778899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHhh
Q 038190 171 GKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKG-----RGIYPDAFV 233 (531)
Q Consensus 171 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 233 (531)
|++++|+..++++... .|. +...|..++.+|.+.|+..+|++.|+++.. .|+.|+..+
T Consensus 81 g~~~~Al~~~~~al~~--~P~---~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFE--HPY---REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHH--STT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHh--CCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999999987 553 889999999999999999999999998743 589998765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00019 Score=56.40 Aligned_cols=62 Identities=6% Similarity=-0.098 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 038190 159 TLGCLIRGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGR 225 (531)
Q Consensus 159 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 225 (531)
.+..+..++.+.|++++|+..+++.++. .|+ +..+|..+..++...|++++|+..|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~---~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEI--DPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhh--hhh---hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4444555555555555555555555543 332 4555555555555555555555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.73 E-value=1.8e-05 Score=67.23 Aligned_cols=120 Identities=10% Similarity=-0.079 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCcchHHHH
Q 038190 65 EVELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKMIGVSDAFVA 144 (531)
Q Consensus 65 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 144 (531)
.|++++|+..|++.++..|. +...+..+...++..|++++|+..++...+.. +-+...+..+...+...+..+++...
T Consensus 9 ~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHHH
Confidence 56899999999999988776 88889999999999999999999999988763 22333444444443322222222111
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 145 LGRILRKVFSPDVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.......+.+++...+......+...|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111122233444456677788888888888888775
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.00073 Score=51.77 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
.+|..+..+|.+.|++++|++.++...+.. |+ +..+|..++.+|...|++++|...|
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~---------------------~~ka~~~~g~~~~~lg~~~~A~~~~ 124 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KN---------------------NVKALYKLGVANMYFGFLEEAKENL 124 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TT---------------------CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc--ch---------------------hhhhhHHhHHHHHHcCCHHHHHHHH
Confidence 355667777777777777777777776632 32 6677777777777777777777777
Q ss_pred HHhhhC
Q 038190 430 KKLPRY 435 (531)
Q Consensus 430 ~~~~~~ 435 (531)
++..+.
T Consensus 125 ~~al~l 130 (153)
T d2fbna1 125 YKAASL 130 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.00057 Score=53.50 Aligned_cols=80 Identities=11% Similarity=-0.043 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038190 278 DVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLIN 357 (531)
Q Consensus 278 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 357 (531)
....|..+..++.+.|++++|+..++.+.+.. +.+...|..+..+|...|++++|...|++..+..+. +......+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567778888899999999999999988764 346788888889999999999999999998887433 4445544444
Q ss_pred HH
Q 038190 358 SY 359 (531)
Q Consensus 358 ~~ 359 (531)
+.
T Consensus 154 ~~ 155 (169)
T d1ihga1 154 VK 155 (169)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=1.4e-05 Score=75.51 Aligned_cols=227 Identities=6% Similarity=-0.065 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCcchHHHHHHHH
Q 038190 70 DALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIGLLPDF-VSLNILMNCFCKMIGVSDAFVALGRI 148 (531)
Q Consensus 70 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 148 (531)
+|.+.|+++.+..+. ...+|..+..++...+++++| |++++... |+- ..++. ...+.+ ..+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~-e~~Lw~-~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV-EQDLWN-HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH-HHHHHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH-HHHHHH-HHHHHHHHHHHHh
Confidence 577888888764333 234566666777777777765 66665432 221 11111 111111 1234556666666
Q ss_pred HHCCCCCChhhHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 038190 149 LRKVFSPDVVTLGCLI--RGLCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRG 226 (531)
Q Consensus 149 ~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 226 (531)
.+....++..-..... ......+.++.|+..+...... .| ++...+..+...+.+.|+.+.|...+.......
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l--~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV--DL---PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC------------------------------------CCHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--Ch---hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 5543333332222211 1122234455555544443332 33 256667777888888888888887776654321
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 038190 227 IYPDAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMK 306 (531)
Q Consensus 227 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 306 (531)
...++..+...+...+++++|...|.+|++ .. +-+..+|+.+...+...|+..+|...|.+..
T Consensus 151 ---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~-------l~-------P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 151 ---CQHCLVHLGDIARYRNQTSQAESYYRHAAQ-------LV-------PSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HC-------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 124556667777777777777774444444 32 3455788888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhc
Q 038190 307 SRGIIPDVVVYSSLIDGYCLM 327 (531)
Q Consensus 307 ~~~~~~~~~~~~~ll~~~~~~ 327 (531)
... +|-..++..|...+.+.
T Consensus 214 ~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 214 AVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp SSS-BCCHHHHHHHHHHHHHH
T ss_pred hCC-CCCHHHHHHHHHHHHHh
Confidence 764 45677777777766543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.62 E-value=0.00036 Score=54.60 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=47.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCC-----------HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCC
Q 038190 89 SFNSLLGALAGKKYYVNFICLSERLNTI---GLLPD-----------FVSLNILMNCFCKMIGVSDAFVALGRILRKVFS 154 (531)
Q Consensus 89 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 154 (531)
.+......+.+.|++.+|+..|.+.+.. ....+ ..+|..+..+|.+.|++++|+..++.+++..+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p- 95 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 95 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc-
Confidence 3455666788888888888888776532 11111 11222333344444444444444444444332
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038190 155 PDVVTLGCLIRGLCMQGKFTEASGLFTKFVA 185 (531)
Q Consensus 155 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 185 (531)
.+..+|..+..+|...|++++|+..|+++..
T Consensus 96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=0.00014 Score=55.31 Aligned_cols=69 Identities=10% Similarity=-0.040 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 038190 66 VELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGK----------KYYVNFICLSERLNTIGLLPDFVSLNILMNCFCKM 135 (531)
Q Consensus 66 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 135 (531)
+.+++|+..|+...+..|. +..+|..+..++... +.+++|+..|++.++.. +.+..+|..+..+|...
T Consensus 11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 4688999999999988776 777888877777644 33466777777776654 44556666666666554
Q ss_pred C
Q 038190 136 I 136 (531)
Q Consensus 136 g 136 (531)
|
T Consensus 89 g 89 (145)
T d1zu2a1 89 A 89 (145)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.57 E-value=0.0023 Score=49.75 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHH
Q 038190 350 SSYNTLINSYSKIEKVEEALSLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELF 429 (531)
Q Consensus 350 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (531)
..|..+..+|.+.|++++|+..++...+. .|+ +..+|..+..+|...|++++|...|
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--~p~---------------------~~~a~~~~~~~~~~l~~~~~A~~~~ 121 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL--DSA---------------------NEKGLYRRGEAQLLMNEFESAKGDF 121 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhc--ccc---------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666778889999999999999998874 333 7889999999999999999999999
Q ss_pred HHhhhCCCCCc-HHHHHHHHHHHHH
Q 038190 430 KKLPRYGPEPN-VVTYTVMICGLCI 453 (531)
Q Consensus 430 ~~~~~~g~~p~-~~~~~~l~~~~~~ 453 (531)
+++++. .|+ ......+-.+...
T Consensus 122 ~~al~l--~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 122 EKVLEV--NPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHH
Confidence 999884 444 4444444444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=0.00015 Score=61.42 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038190 326 LMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSKIEKVEEALSLYGEMIS 377 (531)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 377 (531)
+.|++++|...+++.++..+. +...+..+...|+..|++++|...|+...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456666666666666655433 556666666666666666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.0014 Score=50.38 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=75.7
Q ss_pred HHHHHH--HHHHHcCCChHHHHHHHHHhhhCC-CCC----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 038190 407 TVFNCL--VDGLCKSWRLRSAWELFKKLPRYG-PEP----------NVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRE 473 (531)
Q Consensus 407 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~g-~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~ 473 (531)
.+|..+ ...+...|++++|+..|++.++.. -.| ....|+.+..+|...|++++|++.++
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~-------- 79 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD-------- 79 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh--------
Confidence 355555 566778899999999999998621 112 14578889999999999999987775
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCChhHHHhhHHHhhhc
Q 038190 474 CLKAIELLHKMAKRYVKPD---EITVSILEELLNKDENCHECMNLLPSFLSR 522 (531)
Q Consensus 474 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 522 (531)
+++.++.+......... ...+..++.+|...|++++|++.+++...-
T Consensus 80 --~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 80 --KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp --HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555443221111 235677899999999999999998885543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.29 E-value=0.0011 Score=50.09 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHH
Q 038190 213 NKVRVLFLDMKGRGIYPDAFVYNSLIRVYCCAV----NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINS 288 (531)
Q Consensus 213 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 288 (531)
++|+..|++..+.... +..+|..+..+|...| +...+...++.|.+.|+..... .|+...|...+..
T Consensus 58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--------~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 58 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--------CCCHHHHHHHHHH
Confidence 4455555555543211 3444554544444433 2333444556666677777664 4665555555444
Q ss_pred HhcCCCHHHHHHHHHHHHhCCC
Q 038190 289 LCKDVLVDKAKELFLDMKSRGI 310 (531)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~ 310 (531)
+ ..|.+++.++.+.|+
T Consensus 129 ~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 129 T------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp H------HTHHHHHHHHHHSSS
T ss_pred H------HHHHHHHHHHHHHhc
Confidence 4 455666666666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.24 E-value=0.0017 Score=49.87 Aligned_cols=107 Identities=14% Similarity=0.019 Sum_probs=71.2
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHHhhCCC-CC----------CHhhHHHHHHHHHhcCChhhhhcchHHHHHHHHHH
Q 038190 198 CYASI--IDGLCKDGFVNKVRVLFLDMKGRGI-YP----------DAFVYNSLIRVYCCAVNWEDAKGNTSAALELHEEF 264 (531)
Q Consensus 198 ~~~~l--~~~~~~~~~~~~a~~~~~~m~~~g~-~p----------~~~~~~~li~~~~~~~~~~~a~~~~~~a~~~~~~~ 264 (531)
+|..+ ...+...|++++|+..|++..+... .| ....|+.+..+|...|++++|...+++++.++...
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455566777777777777654210 01 13567788889999999999999999999888776
Q ss_pred HhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 038190 265 VNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKS 307 (531)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (531)
....... .+.....+..+..+|...|++++|...|++..+
T Consensus 89 ~~~~~~~---~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDE---GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccc---cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543100 001123466677888888888888888877654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0058 Score=41.92 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHHHHccCCcchHHHHHHHHHHCCC-----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038190 127 ILMNCFCKMIGVSDAFVALGRILRKVF-----SP-DVVTLGCLIRGLCMQGKFTEASGLFTKFVAF 186 (531)
Q Consensus 127 ~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 186 (531)
.+...+.+.|+++.|...|++.++... .+ ...+++.+..++.+.|++++|+..++++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 444444455555555555554443210 01 1234555555555566666666666555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.0048 Score=42.37 Aligned_cols=77 Identities=13% Similarity=-0.054 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCC-HhhHHHHHHHHHccCCcchHHHHHHHHHHCCCCCChhh
Q 038190 86 FMPSFNSLLGALAGKKYYVNFICLSERLNTIG-----LLPD-FVSLNILMNCFCKMIGVSDAFVALGRILRKVFSPDVVT 159 (531)
Q Consensus 86 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 159 (531)
+...+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|...++++++..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 34455567788889999999999998876531 1122 457888999999999999999999999987543 4445
Q ss_pred HHHH
Q 038190 160 LGCL 163 (531)
Q Consensus 160 ~~~l 163 (531)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.38 Score=43.53 Aligned_cols=48 Identities=6% Similarity=-0.156 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChhHHHhhHHHhhh
Q 038190 471 IRECLKAIELLHKMAKRYVKPDEITVSILEELLNKDENCHECMNLLPSFLS 521 (531)
Q Consensus 471 i~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 521 (531)
+|....|...+..+... .+......+.....+.|.++.|+....+...
T Consensus 394 ~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 394 WNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp TTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred cCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 37788888888777643 2455566788888899999999887776543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.25 E-value=0.082 Score=38.54 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 038190 294 LVDKAKELFLDMKSRGIIPDVVVYSSLIDGYCLMGRIDDARKLFVSIESEGCIPDTSSYNTLINSYSK----IEKVEEAL 369 (531)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~----~~~~~~a~ 369 (531)
++++|.++|++..+.|.. ..+..|. .....+.++|.+.+++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 567888888887777632 2222222 233457788888888877765 44444445544443 23455555
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHhhhCC
Q 038190 370 SLYGEMISMGVRPDNSCILEAAELFRTLHNTKFELDLTVFNCLVDGLCK----SWRLRSAWELFKKLPRYG 436 (531)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 436 (531)
++|++..+.| ++.....|...|.. ..+.++|..+|++..+.|
T Consensus 80 ~~~~~aa~~g-------------------------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN-------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT-------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC-------------------------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555555543 55666666666665 457778888888877765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.23 E-value=0.073 Score=38.82 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 038190 67 ELNDALCFFNYMIHMQPTPFMPSFNSLLGALAGKKYYVNFICLSERLNTIG 117 (531)
Q Consensus 67 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 117 (531)
++++|++.|++..+.|. ...+..|.. ....+.++|+..+++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc
Confidence 56666666666655442 222222221 22344555555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.40 E-value=0.5 Score=33.03 Aligned_cols=140 Identities=11% Similarity=0.031 Sum_probs=95.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCCCCcHHhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcC
Q 038190 167 LCMQGKFTEASGLFTKFVAFDCRPNVIPNVICYASIIDGLCKDGFVNKVRVLFLDMKGRGIYPDA-FVYNSLIRVYCCAV 245 (531)
Q Consensus 167 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~ 245 (531)
+.-.|..++..+++.+.... .+..-||.++--....-+.+-..++++.+-+. +..+. .....++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s-------s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~Nlk~vv~C~~~~n 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS-------STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQNLKSVVECGVINN 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCSCTHHHHHHHHHTT
T ss_pred HHHhhhHHhHHHHHHHHccc-------CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhhcHHHHHHHHHHhc
Confidence 45568888888888888764 15666777777777777777777777776542 11110 11223333433222
Q ss_pred ChhhhhcchHHHHHHHHHHHhCCCCCCccccCCHhhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038190 246 NWEDAKGNTSAALELHEEFVNGNGELGVICHPDVLSYCSIINSLCKDVLVDKAKELFLDMKSRGIIPDVVVYSSLIDGYC 325 (531)
Q Consensus 246 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 325 (531)
.+...+...++.+.+.|+-+.-.++++.+.+. -++++...-.+..+|.
T Consensus 84 -------------------------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~k 131 (161)
T d1wy6a1 84 -------------------------------TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALR 131 (161)
T ss_dssp -------------------------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHH
T ss_pred -------------------------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 23445566778888888888888888887774 4678888888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC
Q 038190 326 LMGRIDDARKLFVSIESEGCI 346 (531)
Q Consensus 326 ~~g~~~~a~~~~~~~~~~g~~ 346 (531)
+.|...++.+++.+.-+.|++
T Consensus 132 kig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 132 RVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HTTCHHHHHHHHHHHHHTTCH
T ss_pred HhcchhhHHHHHHHHHHHhHH
Confidence 999999999999888888764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.58 Score=32.87 Aligned_cols=71 Identities=8% Similarity=0.051 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChhHHHhhHH
Q 038190 439 PNVVTYTVMICGLCIEGGIEKAYDLLPDMEEKIRECLKAIELLHKMAKRYVKPDE-ITVSILEELLNKDENCHECMNLLP 517 (531)
Q Consensus 439 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~i~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 517 (531)
|...+--.+..+++++.+.+. .++|+.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d--------------~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~ 97 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVND--------------ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVD 97 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHH--------------HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHH--------------HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555556666666554432 234444454444332 1122 455556666777777777777766
Q ss_pred Hhhhcch
Q 038190 518 SFLSRNQ 524 (531)
Q Consensus 518 ~~~~~~~ 524 (531)
++...++
T Consensus 98 ~~L~ieP 104 (124)
T d2pqrb1 98 TLFEHER 104 (124)
T ss_dssp HHHHHCT
T ss_pred HHHccCC
Confidence 6555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.29 E-value=1.2 Score=31.18 Aligned_cols=67 Identities=15% Similarity=0.046 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHcCC---ChHHHHHHHHHhhhCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 403 ELDLTVFNCLVDGLCKSW---RLRSAWELFKKLPRYGPEPN-VVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 403 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
.+++.+-=...+++.+.. +.++|+.+++...+.+ +.+ ...+-.|..+|.+.|++++|.+.++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 356666666777777664 4678999999988642 223 346667888899999999999888887765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.88 E-value=1.7 Score=30.24 Aligned_cols=64 Identities=16% Similarity=0.012 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038190 405 DLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEE 469 (531)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (531)
+...+...++.+...|+-+.-.++++.+.+. -+|++...-.+..+|.+-|...++-+++.+.-+
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456667778888888888888888887664 367888888888999999988888777665443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.58 E-value=0.65 Score=30.66 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 038190 424 SAWELFKKLPRYGPEPNVVTYTVMICGLCIEGGIEKAYDLLPDMEEK 470 (531)
Q Consensus 424 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (531)
+..+-++.+....+.|.+....+.+.+|.+.+++.-|+++|+-+..+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555555555555555555444
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.87 E-value=3.3 Score=27.23 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhCCCCCcHHHHHHHHHH
Q 038190 386 CILEAAELFRTLHNTKFELDLTVFNCLVDGLCKSWRLRSAWELFKKLPRYGPEPNVVTYTVMICG 450 (531)
Q Consensus 386 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 450 (531)
+.-++.+-+..+......|++.+..+.+++|.+.+++..|.++|+..+.+ +.++...|..+++-
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 34456667777888899999999999999999999999999999998864 23345566666543
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