Citrus Sinensis ID: 038200
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WVU0 | 530 | Pentatricopeptide repeat- | yes | no | 0.906 | 0.894 | 0.512 | 1e-154 | |
| Q9SJG6 | 559 | Pentatricopeptide repeat- | no | no | 0.906 | 0.847 | 0.347 | 6e-79 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.925 | 0.749 | 0.344 | 3e-78 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.900 | 0.882 | 0.326 | 9e-77 | |
| Q9FLS9 | 499 | Pentatricopeptide repeat- | no | no | 0.868 | 0.909 | 0.330 | 1e-75 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.917 | 0.759 | 0.310 | 2e-75 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.902 | 0.761 | 0.304 | 9e-73 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.934 | 0.760 | 0.302 | 1e-72 | |
| P0C8Q7 | 534 | Pentatricopeptide repeat- | no | no | 0.885 | 0.867 | 0.324 | 8e-72 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.810 | 0.739 | 0.343 | 2e-71 |
| >sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 248/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A LITSG F+++S W I LLK S+ FG YTV +++ I +C N V K
Sbjct: 35 ITHLFQVHARLITSGNFWDSS-WAIRLLKSSSRFGDSSYTVSIYRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P+SYTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSL++MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AAH+LFD MP
Sbjct: 152 VLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N++SWNIMIS Y + NPG S+ LFREM+++GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 DKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V +A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE G++LF A++NG + PDE+TF+GV+C C RA L+++G+ Y+ M+D ++IKPN
Sbjct: 332 PEGGLELFEAMINGM-----LRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +P+ ++++ ES W +LLS RF G + E +
Sbjct: 387 FGHQWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 169/487 (34%), Positives = 261/487 (53%), Gaps = 13/487 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++L QI A LI +GL + + L A +Y LVF IN+ F N +I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMI--KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P+ + ++ M+ P T+ S+F + + G G HG+ +K G+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N++++MY G + A +F+ M D+++WNS++ G + G + A LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+RN VSWN MISG+ ++G +L +FREM + + + TM S+L AC +G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y VR + N I+ TALID+Y KC +E VF+ + L CWN+MILG +
Sbjct: 278 RWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANN 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + LF+ L + PD ++FIGV+ AC + + ++FR M + Y I+
Sbjct: 338 GFEERAMDLFSELER-----SGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M N+ GA L EEAE +++ MP + D +++W SLLS CR G V M +
Sbjct: 393 PSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEED-----TVIWSSLLSACRKIGNVEMAK 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK-EV 477
R AK +DP + Y L N YA G +E+ R LMK+R+M + GC +++ EV
Sbjct: 448 RAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEV 507
Query: 478 VEKLKVG 484
E + G
Sbjct: 508 HEFISCG 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 180/523 (34%), Positives = 275/523 (52%), Gaps = 39/523 (7%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLK-------HSADFGSPDYTVLVFKCINNPGTF 53
++ L QI A I SG ++ +L+ H D DY +F + F
Sbjct: 36 IRDLSQIHAVFIKSGQM-RDTLAAAEILRFCATSDLHHRDL---DYAHKIFNQMPQRNCF 91
Query: 54 CVNAVIKAYSNSCVPDQ--GVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCH 110
N +I+ +S S + + +M+ + F+ PN +TF S+ +CAKTG ++ G H
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF---------VQMSPR-----DLISW 156
GLALK G + VM++L+ MY G M AR +F V M+ R +++ W
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216
N ++ G++R GD AA LFD M +R+VVSWN MISGYS +G ++++FREM K R
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276
N T+ SVL A R G +H Y + ++ + +L +ALID+YSKC +E A V
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHV 331
Query: 277 FDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336
F+ + N++ W+AMI G IHG+ + I F + V P ++ +I ++ AC
Sbjct: 332 FERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV-----RPSDVAYINLLTACS 386
Query: 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396
L+ EGR+YF QM+ ++P HY CM +L + L +EAEE + MP D+
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD--- 443
Query: 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456
++W +LL CR QG V M +R+A +DM P D Y L N+YA G W +V+ +R
Sbjct: 444 --VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 457 LMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
MK++ + + PGC L+D+ V+ + V K E+N M+
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAK-EINSML 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 257/487 (52%), Gaps = 16/487 (3%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A +I GL +SF ++ DY +F ++NP F N++I+AY+++
Sbjct: 28 KINASIIIHGLS-QSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 CVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + Y Q+++ F +P+ +TF +F SCA G G HG K G F +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY F + A +F +M RD+ISWNS++SG+ R G M A LF +M ++ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MISGY+ G ++ FREM +G ++ ++ SVL +C + G+ +H Y
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R + ALI++YSKC + A ++F M ++++ W+ MI G+ HG
Sbjct: 267 AERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I+ F + V P+ ITF+G++ AC + EG +YF M Y+I+P HY
Sbjct: 327 IETFNEMQRAKV-----KPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ ++ A A E A EI + MP M +S +W SLLS CR G + +
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
V+++P+D Y L N+YA G+WEDV+R+R++++ M + PG L+++ +V++ G
Sbjct: 437 VELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSG 496
Query: 485 H----FW 487
FW
Sbjct: 497 DNSKPFW 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 256/478 (53%), Gaps = 24/478 (5%)
Query: 1 MKQLLQIQAHLITSGLF---------FNNSFWTINLLKHSADFGSP--DYTVLVFKCINN 49
+K L Q A ITSG F N + I + SA Y VF+ I N
Sbjct: 17 LKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATSVFRFITN 76
Query: 50 PGTFCVNAVIKA---YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA--KTGCVE 104
P TFC N +I+ + S + + F+++M + P+ +TF +F +CA K G +
Sbjct: 77 PSTFCFNTIIRICTLHEPSSLSSKR--FFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLT 134
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
H AL+ G+ +L +N+LI +Y +D A +F + RD++++N ++ G V
Sbjct: 135 LVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLV 194
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
++ ++ A ELFD MP R++VSWN +ISGY++ + ++KLF EM+ G + ++ + S
Sbjct: 195 KAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVS 254
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L+AC +S + +G+++H YT R L + L T L+D Y+KC ++ A +F+ +D+
Sbjct: 255 TLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKT 314
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
L WNAMI G +HG E + F +V+ I PD +TFI V+ C + L+ E
Sbjct: 315 LFTWNAMITGLAMHGNGELTVDYFRKMVS-----SGIKPDGVTFISVLVGCSHSGLVDEA 369
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R F QM Y + HY CMA+L A L EEA E++ +MP+D N + + W L
Sbjct: 370 RNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNRE-KLLAWSGL 428
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
L CR G + + E+ A + P+D Y+ ++ +YA A +WE+V +VRE++ + +
Sbjct: 429 LGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDK 486
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 154/496 (31%), Positives = 268/496 (54%), Gaps = 16/496 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAV 58
+ ++LQI A ++ L + + +NL H A G +++ +F +P F A
Sbjct: 42 VDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAA 101
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I S + + DQ + Y+Q++ + PN +TF SL SC+ + G + H LK G+
Sbjct: 102 INTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ V L+++Y G + A+ +F +M R L+S ++++ + + G++ AA LFD
Sbjct: 158 GIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDS 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237
M ER++VSWN+MI GY++ G P +L LF++++ G D+ T+ + L+AC +
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
GR +H + + ++ N+ + T LID+YSKC +E A VF+ +++V WNAMI G+ +
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG ++ ++LF + T + P +ITFIG + AC A L+ EG + F M Y I
Sbjct: 338 HGYSQDALRLFNEMQGIT----GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L A + A E ++ M NM +S++W S+L C+ G +
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNM-----NMDADSVLWSSVLGSCKLHGDFVLG 448
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEV 477
+ +A+ + ++ ++ Y L N+YA G +E VA+VR LMK++ + + PG ++++
Sbjct: 449 KEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENK 508
Query: 478 VEKLKVGHFWRGGMKE 493
V + + G KE
Sbjct: 509 VHEFRAGDREHSKSKE 524
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 148/486 (30%), Positives = 252/486 (51%), Gaps = 14/486 (2%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPD---YTVLVFKCINNPGTFCVNAV 58
++L QI A ++ +GL +S+ L S D Y +VF + P TF N +
Sbjct: 28 EELKQIHARMLKTGLM-QDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM 86
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
I+ +S S P++ ++ Y +M+ + N+YTF SL +C+ E H K G
Sbjct: 87 IRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGY 146
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ ++ +NSLIN Y G A +F ++ D +SWNS++ G+V++G M A LF
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
M E+N +SW MISGY ++ +L+LF EM S ++ ++A+ L+AC + +G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
+ +H Y +T ++ + +L LID+Y+KC ++E A VF ++ +++ W A+I G+ H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E I F + I P+ ITF V+ AC L+ EG+ F M Y +K
Sbjct: 327 GHGREAISKFMEM-----QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY C+ +L A L +EA+ +++MP + +++W +LL CR + + E
Sbjct: 382 PTIEHYGCIVDLLGRAGLLDEAKRFIQEMP-----LKPNAVIWGALLKACRIHKNIELGE 436
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVV 478
+ + + +DP RY N++A+ +W+ A R LMK++ + ++PGC + L+
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 479 EKLKVG 484
+ G
Sbjct: 497 HEFLAG 502
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/535 (30%), Positives = 277/535 (51%), Gaps = 46/535 (8%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP--DYTVLVFKCINNPGTFCVNAV 58
++ L QI I G+ +S++T L+ H A S Y + C P F N +
Sbjct: 18 LRALTQIHGLFIKYGVD-TDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTL 76
Query: 59 IKAYSNSCVPDQGVVFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
++ YS S P V +++M++ GF+ P+S++F + + + G H ALK+G
Sbjct: 77 VRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHG 136
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
++ L V +LI MYG G ++ AR +F +M +L++WN++++ R D++ A E+FD
Sbjct: 137 LESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFD 196
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLF------------------------------ 207
M RN SWN+M++GY K+G + ++F
Sbjct: 197 KMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLY 256
Query: 208 -REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266
RE+ ++G N+ ++ VL+AC +S F G+ +HG+ + + ++ ALID+YS+
Sbjct: 257 FRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSR 316
Query: 267 CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE 325
C V +A+ VF+ M + R +V W +MI G +HG+ EE ++LF N A G ++PD
Sbjct: 317 CGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF----NEMTAYG-VTPDG 371
Query: 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385
I+FI ++ AC A L+ EG YF +M Y I+P HY CM +LY + ++A + +
Sbjct: 372 ISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFIC 431
Query: 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445
+MP + +I+W +LL C G + + E++ + ++DP + L N YA A
Sbjct: 432 QMP-----IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATA 486
Query: 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500
G+W+DVA +R+ M +R+ + LV++ + + K G +G E K+ E
Sbjct: 487 GKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKE 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 155/478 (32%), Positives = 262/478 (54%), Gaps = 15/478 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINL-LKHSADFGSPDYTVLVFKCINNPGTFCVNAVI 59
M +L +I LIT GL F + L + G DY +++P + N VI
Sbjct: 21 MSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVI 80
Query: 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD 119
+ +SNS P++ + Y+QM++ G +P+ T+ L S ++ + GG H +K+G++
Sbjct: 81 RGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLE 140
Query: 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIM 179
++L + N+LI+MYG F AR +F +M ++L++WNSI+ + +SGD+ +A +FD M
Sbjct: 141 WDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEM 200
Query: 180 PERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEG 238
ER+VV+W+ MI GY K G +L++F +MM+ G + N+ TM SV+ AC N G
Sbjct: 201 SERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRG 260
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF--DSMADRNLVCWNAMILGHC 296
++VH Y + L +IL T+LID+Y+KC + A VF S+ + + + WNA+I G
Sbjct: 261 KTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLA 320
Query: 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356
HG E ++LF + I PDEITF+ ++ AC L+ E +F+ + +
Sbjct: 321 SHGFIRESLQLFHKMRE-----SKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKE-SG 374
Query: 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416
+P HY CM ++ + A L ++A + + +MP + M +LL+ C G + +
Sbjct: 375 AEPKSEHYACMVDVLSRAGLVKDAHDFISEMP-----IKPTGSMLGALLNGCINHGNLEL 429
Query: 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDL 474
E + K +++ P + RY L NVYA+ Q+ +RE M+K+ + ++ G ++DL
Sbjct: 430 AETVGKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDL 487
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 252/442 (57%), Gaps = 18/442 (4%)
Query: 52 TFCVNAVIKAYSNSCVPDQ---GVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108
+F N +I+A ++ Q + YL+M + P+ +TF L S + G
Sbjct: 24 SFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQR 83
Query: 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGD 168
H L G+D + V SL+NMY G + A+ +F +DL +WNS+V+ + ++G
Sbjct: 84 THAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGL 143
Query: 169 MSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-----KSGFRGNDKTMA 223
+ A +LFD MPERNV+SW+ +I+GY G +L LFREM ++ R N+ TM+
Sbjct: 144 IDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMS 203
Query: 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM-AD 282
+VL+ACGR +G+ VH Y + ++ +I+L TALID+Y+KC +E A+RVF+++ +
Sbjct: 204 TVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSK 263
Query: 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342
+++ ++AMI ++G +E +LF+ + +I+P+ +TF+G++ ACV L+
Sbjct: 264 KDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD----NINPNSVTFVGILGACVHRGLIN 319
Query: 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402
EG+ YF+ MI+ + I P+ HY CM +LY + L +EAE + MP + D ++W
Sbjct: 320 EGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPD-----VLIWG 374
Query: 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462
SLLS R G + E K +++DP + Y L NVYA G+W +V +R M+ +
Sbjct: 375 SLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKG 434
Query: 463 MGRMPGCRLVDLKEVVEKLKVG 484
+ ++PGC V+++ VV + VG
Sbjct: 435 INKVPGCSYVEVEGVVHEFVVG 456
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| 147772239 | 901 | hypothetical protein VITISV_031859 [Viti | 0.946 | 0.549 | 0.573 | 1e-174 | |
| 224133640 | 564 | predicted protein [Populus trichocarpa] | 0.946 | 0.877 | 0.572 | 1e-168 | |
| 449434472 | 575 | PREDICTED: pentatricopeptide repeat-cont | 0.940 | 0.855 | 0.530 | 1e-162 | |
| 357483883 | 665 | Pentatricopeptide repeat-containing prot | 0.946 | 0.744 | 0.541 | 1e-161 | |
| 356495350 | 579 | PREDICTED: pentatricopeptide repeat-cont | 0.950 | 0.858 | 0.542 | 1e-157 | |
| 145339360 | 530 | pentatricopeptide repeat-containing prot | 0.906 | 0.894 | 0.512 | 1e-152 | |
| 297819826 | 530 | binding protein [Arabidopsis lyrata subs | 0.906 | 0.894 | 0.516 | 1e-151 | |
| 449491452 | 547 | PREDICTED: pentatricopeptide repeat-cont | 0.892 | 0.853 | 0.509 | 1e-146 | |
| 356540832 | 560 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.910 | 0.85 | 0.522 | 1e-145 | |
| 6562284 | 486 | putative protein [Arabidopsis thaliana] | 0.804 | 0.866 | 0.492 | 1e-133 |
| >gi|147772239|emb|CAN73672.1| hypothetical protein VITISV_031859 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 294/513 (57%), Positives = 372/513 (72%), Gaps = 18/513 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M+QL QIQA+LI SGLF F +LK SAD+ +YT+L+F+ I++P T CVNAVIK
Sbjct: 385 MRQLSQIQAYLIISGLF-RKPFVASKVLKVSADYADVNYTILIFRSIDSPDTVCVNAVIK 443
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S V Q +VFY + ++NGFM NS+TF LF C K GCVE G HG A+KNGVD
Sbjct: 444 AYSISSVAHQALVFYFETLRNGFMCNSFTFPPLFSCCRKXGCVEYGEKFHGQAIKNGVDN 503
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
L V NS+++MYGC G ++ A +F +MS RDL+SWNSI+ + + G + AH LFD MP
Sbjct: 504 VLDVQNSMVHMYGCCGVVEXAEKVFGEMSKRDLVSWNSIIDAYAKLGHLVLAHRLFDAMP 563
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERN VSWNIM+ GY K GNPGC+LKLFREM +G RG + TM SVLTAC RSAR EGRS
Sbjct: 564 ERNAVSWNIMMGGYLKGGNPGCALKLFREMANAGLRGGETTMVSVLTACCRSARLKEGRS 623
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
+HG +RT LK ++ILDTALID+YSKC++V+VA+ V+D M NLVCWNAMILGHCIHG
Sbjct: 624 IHGVLIRTFLKSSLILDTALIDMYSKCERVDVARVVYDRMTKXNLVCWNAMILGHCIHGN 683
Query: 301 PEEGIKLFTALVNGT---------------VAGGSISPDEITFIGVICACVRAELLTEGR 345
E+G+KLF +V+G + G + PDEITFIGV+CAC R LL EGR
Sbjct: 684 AEDGLKLFEEMVDGIRSEDGEINLDKGIKRIEGQGLJPDEITFIGVLCACAREGLLAEGR 743
Query: 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405
Y+ QMI+ + IKPNFAHYWCMANL+AG L +EAEEILR MPE+++++S+ES W LL
Sbjct: 744 SYYSQMINTFHIKPNFAHYWCMANLFAGVGLVQEAEEILRSMPEEDEDLSWESSFWAGLL 803
Query: 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465
S CRFQG V + ER+A ++ +PQ+ S Y+ LLNVYAVAG+WEDVARV+E++K+R + +
Sbjct: 804 SSCRFQGXVFLGERIATYLIESEPQNISYYRLLLNVYAVAGRWEDVARVKEMVKERGIKQ 863
Query: 466 MPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498
MPGC L DLKE+V + K+G W+ GM EVN M
Sbjct: 864 MPGCNLADLKEIVHEFKLGEKWQQGM--EVNTM 894
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa] gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 286/500 (57%), Positives = 367/500 (73%), Gaps = 5/500 (1%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAY 62
L QIQA LIT GLF S W+ LLKH ADFG DYT+ +FK I +PGTF VN V+KAY
Sbjct: 66 HLYQIQAQLITCGLF---SLWSPRLLKHFADFGDIDYTIFIFKFIASPGTFVVNNVVKAY 122
Query: 63 SNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL 122
S S P++ +VFY +M+K+GF PNSYTFVSLFG CAK GC + G HG A+KNGVD L
Sbjct: 123 SLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRIL 182
Query: 123 PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182
PV NSLI+ YGC G M A+ +F +MS RDL+SWNSI+ G+ G++ AH LF++MPER
Sbjct: 183 PVENSLIHCYGCCGDMGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPER 242
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
NVVSWNI+ISGY K NPGC L LFR+MM G RGND T+ SVL+ACGRSAR EGRSVH
Sbjct: 243 NVVSWNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVH 302
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
G+ V+ N+I +T LID+Y++C KVE+A+R+FD + RNL CWNAMILGHC+HG P+
Sbjct: 303 GFIVKKFSSMNVIHETTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPD 362
Query: 303 EGIKLFTALVNGTVAG--GSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
+G++LF +V+ G S+ PDE+TFIGV+CAC RA LLTEG+ +F QMI + +KPN
Sbjct: 363 DGLELFKDMVDRAGLGKRDSVHPDEVTFIGVLCACARAGLLTEGKNFFSQMIYNHGLKPN 422
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
FAH+WCMANLYA A L +EAE+ILR E+ ++M ES++W +LL+ CRFQG VA+ ER+
Sbjct: 423 FAHFWCMANLYARAGLIQEAEDILRTTQEEEEDMPLESLVWANLLNSCRFQGNVALGERI 482
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
A S +DM+P + Y+ LLNVYAV G+W+DVA V++L+K + GR PGC LVDLKE+V
Sbjct: 483 ANSLIDMEPWNILHYRLLLNVYAVGGRWDDVAMVKDLVKTKMKGRTPGCNLVDLKEIVHN 542
Query: 481 LKVGHFWRGGMKEEVNKMME 500
+VG + E ++M+
Sbjct: 543 YEVGRLLPERIGELNTQLMK 562
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434472|ref|XP_004135020.1| PREDICTED: pentatricopeptide repeat-containing protein At3g51320-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/509 (53%), Positives = 364/509 (71%), Gaps = 17/509 (3%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+++L Q HLITSGLF N+ FW +L +++FG YTVL+F+ I P TFCVN VIK
Sbjct: 62 VRELFQFHGHLITSGLF-NDHFWANRVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIK 120
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S VP + V Y + + NG P+SYTF+SLF +CA GC G CHG A KNGVD
Sbjct: 121 AYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDS 180
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI+MYGC ++ R +F +MS +DL+SWNSIV+ + R GD+ AH++FD+MP
Sbjct: 181 VMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFDVMP 240
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNVVSWN+MIS Y + GNPGC++KLFR M+ G RGN+ TM +VL+AC RSAR NEGRS
Sbjct: 241 ERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRS 300
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VHG+ R S+K + ++TAL+D+YSKC +V VA+RVFD + RNLV WNAMILGH +HG
Sbjct: 301 VHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 360
Query: 301 PEEGIKLFTALV------NGTVAGG----------SISPDEITFIGVICACVRAELLTEG 344
P++G++LF +V N G + PD+ITFIGV+CAC RA LL +
Sbjct: 361 PKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLCACARAGLLKDA 420
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF +MI+ + ++PNF HYWC+AN+Y L E+A EILR MPEDN++ S ES++W+ L
Sbjct: 421 ENYFDEMINVFLVRPNFGHYWCLANVYVAVGLIEQAVEILRNMPEDNEDFSSESVVWIDL 480
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ CRF G V++ E++AK +DM+P++ S Y+ LLN+YAVAG+WEDV+R++ LMK++R+G
Sbjct: 481 LTTCRFVGDVSLGEQIAKYLIDMEPKNDSYYRLLLNIYAVAGRWEDVSRIKLLMKEKRLG 540
Query: 465 RMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493
M GCRLVDLKE+V LK+G+ + MKE
Sbjct: 541 TMSGCRLVDLKEIVHSLKLGNHLQERMKE 569
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483883|ref|XP_003612228.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513563|gb|AES95186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 278/513 (54%), Positives = 361/513 (70%), Gaps = 18/513 (3%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNP-GTFCVNAVIKA 61
LLQIQ+ LITS F+ N F + LL +++ + D+T L+F NNP TFCVN VI +
Sbjct: 53 HLLQIQSLLITSS-FYRNPFLSRTLLSRASNLCTVDFTFLIFHHFNNPLDTFCVNTVINS 111
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y NS VP + +VFY +K GF NSYTFVSL +C+K CV+ G MCHG A+KNGVDF
Sbjct: 112 YCNSYVPHKAIVFYFSSLKIGFFANSYTFVSLISACSKMSCVDNGKMCHGQAVKNGVDFV 171
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSL +MYG G ++ AR MF M RDL+SWNS++ G+V+ GD+SAAH+LFD+MPE
Sbjct: 172 LPVENSLAHMYGSCGYVEVARVMFDGMVSRDLVSWNSMIDGYVKVGDLSAAHKLFDVMPE 231
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN +ISGYSK NPG +LKLFREM + R N +TM +TACGRS R EG+SV
Sbjct: 232 RNLVTWNCLISGYSKGRNPGYALKLFREMGRLRIRENARTMVCAVTACGRSGRLKEGKSV 291
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG +R ++ ++ILDTALID+Y KC +VE A +VF+ M+ RNLV WNAMILGHCIHG P
Sbjct: 292 HGSMIRLFMRSSLILDTALIDMYCKCGRVEAASKVFERMSSRNLVSWNAMILGHCIHGNP 351
Query: 302 EEGIKLFTALVNGTVAGGSIS---------------PDEITFIGVICACVRAELLTEGRK 346
E+G+ LF +V G + PDEITFIG++CAC RAELL+EGR
Sbjct: 352 EDGLSLFDLMVGMERVKGEVEVDESSSADRGLVRLLPDEITFIGILCACARAELLSEGRS 411
Query: 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406
YF+QMID + +KPNFAH+WCMANL A L +EAEE L+ M + + +S ES++W SLL
Sbjct: 412 YFKQMIDVFGLKPNFAHFWCMANLLANVGLIDEAEECLKNMAKFDGYISHESLLWASLLG 471
Query: 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRM 466
LCRF+ V + E++AK +D DP + + YQFLL +YAVA QWE+V+RV++LMK+R++ +
Sbjct: 472 LCRFKRDVYLGEQIAKLLIDTDPNNLAYYQFLLIIYAVAAQWENVSRVQKLMKERKLDII 531
Query: 467 PGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499
PG LVDLK +V KV + WR G+ E VN MM
Sbjct: 532 PGSNLVDLKNIVHNFKVSNNWREGI-EAVNIMM 563
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein At3g51320-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/507 (54%), Positives = 357/507 (70%), Gaps = 10/507 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ LLQIQA L+TS LF N + +L ++ YT ++F+ IN+ TFCVN VI+A
Sbjct: 55 RHLLQIQALLVTSSLF-RNPYLARTILSRASHLCDVAYTRVIFRSINSLDTFCVNIVIQA 113
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
YSNS P + +VFY + + GF PNSYTFV L SCAK GC+ G CH A KNGVD
Sbjct: 114 YSNSHAPREAIVFYFRSLMRGFFPNSYTFVPLVASCAKMGCIGSGKECHAQATKNGVDSV 173
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSLI+MY C G + AR +F M RDL+SWNSI++GH+ G+++AAH LFD MPE
Sbjct: 174 LPVQNSLIHMYVCCGGVQLARVLFDGMLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPE 233
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN+MISGY K NPG ++KLFREM + G RGN +TM V TACGRS R E +SV
Sbjct: 234 RNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGNARTMVCVATACGRSGRLKEAKSV 293
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
HG VR SL+ ++ILDTALI +Y KC+KVEVAQ VF+ M +RNLV WN MILGHCI G P
Sbjct: 294 HGSIVRMSLRSSLILDTALIGMYCKCRKVEVAQIVFERMRERNLVSWNMMILGHCIRGSP 353
Query: 302 EEGIKLFTALVN-GTVAGGSIS-------PDEITFIGVICACVRAELLTEGRKYFRQMID 353
E+G+ LF +++ G + G S P+E+TFIGV+CAC RAE+L EGR YF+QM D
Sbjct: 354 EDGLDLFEVMISMGKMKHGVESDETLRLLPNEVTFIGVLCACARAEMLDEGRSYFKQMTD 413
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413
+ +KPN+AH+WCMANL A +L EAEE LR M E + +MS ES++W SLL LC F+
Sbjct: 414 VFGVKPNYAHFWCMANLLASVKLVGEAEEFLRSMAEFDGDMSCESLVWASLLGLCHFKRD 473
Query: 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVD 473
V + ER+AK VDMDP++ + YQFLL +YAV+ QWE+V+ V++L+K+RR+ +PG LVD
Sbjct: 474 VYLGERIAKLLVDMDPKNLTCYQFLLIIYAVSAQWENVSEVQKLVKERRLEIIPGSSLVD 533
Query: 474 LKEVVEKLKVGHFWRGGMKEEVNKMME 500
LK +V KV + + G+ E VN MM+
Sbjct: 534 LKNIVHNFKVTNKGQEGI-EAVNLMMD 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145339360|ref|NP_190700.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122230198|sp|Q0WVU0.1|PP278_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g51320 gi|110741620|dbj|BAE98758.1| hypothetical protein [Arabidopsis thaliana] gi|332645257|gb|AEE78778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ L Q+ A LITSG F+++S W I LLK S+ FG YTV +++ I +C N V K
Sbjct: 35 ITHLFQVHARLITSGNFWDSS-WAIRLLKSSSRFGDSSYTVSIYRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P+SYTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSL++MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AAH+LFD MP
Sbjct: 152 VLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
++N++SWNIMIS Y + NPG S+ LFREM+++GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 DKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V +A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE G++LF A++NG + PDE+TF+GV+C C RA L+++G+ Y+ M+D ++IKPN
Sbjct: 332 PEGGLELFEAMINGM-----LRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +P+ ++++ ES W +LLS RF G + E +
Sbjct: 387 FGHQWCMANLYSSAGFPEEAEEALKNLPD--EDVTPESTKWANLLSSSRFTGNPTLGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819826|ref|XP_002877796.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323634|gb|EFH54055.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 250/484 (51%), Positives = 353/484 (72%), Gaps = 10/484 (2%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+K L Q+ A LITSG F+++S W I LLK S+ FG YT+ +F+ I +C N V K
Sbjct: 35 IKHLFQVHARLITSGNFWDSS-WAIRLLKCSSRFGDSSYTLSIFRSIGK--LYCANPVFK 91
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY S P Q + FY +++ GF+P++YTFVSL KT CV+ G MCHG A+K+G D
Sbjct: 92 AYLVSSSPKQALGFYFDILRFGFVPDTYTFVSLVSCIEKTCCVDSGKMCHGQAIKHGCDQ 151
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
LPV NSLI+MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AH+LFD MP
Sbjct: 152 VLPVQNSLIHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGVVRNGDVLYAHKLFDEMP 211
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
E+N++SWNIMIS Y + NPG S+ LFREM+ +GF+GN+ T+ +L ACGRSAR EGRS
Sbjct: 212 EKNMISWNIMISAYLGANNPGVSIFLFREMVGAGFQGNENTLVLLLNACGRSARLKEGRS 271
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VH +RT L ++++DTALID+Y KC++V++A+R+FDS++ RN V WN MIL HC+HG+
Sbjct: 272 VHASLIRTFLNSSVVIDTALIDMYGKCKEVDLARRIFDSLSVRNKVTWNVMILAHCLHGR 331
Query: 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN 360
PE+G++LF A++NG + PDE+TF+GV+C C RA L+ +G+ Y+ M+D ++IKPN
Sbjct: 332 PEDGLELFEAMINGL-----LRPDEVTFVGVLCGCARAGLVYQGQSYYSLMVDEFEIKPN 386
Query: 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420
F H WCMANLY+ A EEAEE L+ +PE ++++ ES W +LLS RF A+ E +
Sbjct: 387 FGHQWCMANLYSNAGFPEEAEEALKNLPE--EDVTPESAKWANLLSWSRFTVNPALGESI 444
Query: 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEK 480
AKS ++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC LVDLKE+V
Sbjct: 445 AKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREVVKERKIGRIPGCGLVDLKEIVHG 504
Query: 481 LKVG 484
L++G
Sbjct: 505 LRLG 508
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491452|ref|XP_004158900.1| PREDICTED: pentatricopeptide repeat-containing protein At3g51320-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 249/489 (50%), Positives = 341/489 (69%), Gaps = 22/489 (4%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
+ +LQI + + FFN+ +L +++FG YTVL+F+ I P TFCVN VIK
Sbjct: 65 IHPILQILLDITKATRFFNH---VRAVLLQASEFGDIVYTVLIFRHIKVPNTFCVNRVIK 121
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AYS S VP + V Y + + NG P+SYTF+SLF +CA GC G CHG A KNGVD
Sbjct: 122 AYSLSTVPLEAVFVYFEWLGNGLRPDSYTFLSLFSACASFGCGASGRKCHGQAFKNGVDS 181
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ + NSLI+MYGC ++ R +F +MS +DL+SWNSIV+ + R GD+ AH++FD+MP
Sbjct: 182 VMVLGNSLIHMYGCCKHIELGRKVFDEMSTQDLVSWNSIVTAYARVGDLYTAHDMFDVMP 241
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRS 240
ERNVVSWN+MIS Y + GNPGC++KLFR M+ G RGN+ TM +VL+AC RSAR NEGRS
Sbjct: 242 ERNVVSWNLMISEYLRGGNPGCAMKLFRNMVNVGIRGNNTTMVNVLSACSRSARLNEGRS 301
Query: 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGK 300
VHG+ R S+K + ++TAL+D+YSKC +V VA+RVFD + RNLV WNAMILGH +HG
Sbjct: 302 VHGFMYRASMKFCVFINTALVDMYSKCHRVSVARRVFDRLMIRNLVTWNAMILGHSLHGN 361
Query: 301 PEEGIKLFTALV------NGTVAGG----------SISPDEITFIGVICACVRAELLTEG 344
P++G++LF +V N G + PD+ITFIGV+CAC RA LL +
Sbjct: 362 PKDGLELFEEMVGELREINEETGNGKKFKQDEGKRKVFPDQITFIGVLCACARAGLLKDA 421
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
YF +MI+ + ++PNF HYWC+AN+Y L E+A EILR MPEDN++ S ES++W+ L
Sbjct: 422 ENYFDEMINVFLVRPNFGHYWCLANVYVAVGLIEQAVEILRNMPEDNEDFSSESVVWIDL 481
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464
L+ CRF G V++ E++AK +DM+P++ S Y+ LLN+YAVAG+WEDV+R++ LMK++ +
Sbjct: 482 LTTCRFVGDVSLGEQIAKYLIDMEPKNDSYYRLLLNIYAVAGRWEDVSRIKLLMKEKDLE 541
Query: 465 RMPGCRLVD 473
R CR+VD
Sbjct: 542 R---CRVVD 547
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540832|ref|XP_003538888.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g51320-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 252/482 (52%), Positives = 338/482 (70%), Gaps = 6/482 (1%)
Query: 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKA 61
+ LLQ+QA L+TS LF N F +L ++ + YT+L+F+ IN+ GTFCVN VIK+
Sbjct: 72 RHLLQMQALLVTSSLF-RNPFLARTVLSRASHLCNFAYTLLIFRTINSLGTFCVNTVIKS 130
Query: 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE 121
Y NS P + +VFY + + GF PNSYTFV L SCAK GC++ G CH A KNGVD
Sbjct: 131 YCNSHAPREAIVFYFRSLMCGFFPNSYTFVPLVASCAKMGCIDSGKECHAQATKNGVDSV 190
Query: 122 LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181
LPV NSLI+MY C G + AR +F M RDL+S NSI+ G + G+++AAH L + MP+
Sbjct: 191 LPVQNSLIHMYACCGDVQLARVLFDGMLSRDLVSRNSIIDGIMMVGELNAAHRLLNEMPD 250
Query: 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
RN+V+WN+MISGY K NPG ++KLFREM + G RG+ +TM V TACGRS R EG+SV
Sbjct: 251 RNLVTWNVMISGYLKGRNPGYAMKLFREMGRLGLRGDARTMVCVATACGRSGRLKEGKSV 310
Query: 242 HGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301
+G VR ++ ++ILDT LID+Y KC+KVE A+RVF+ M +RNLV WNAMILGHCI G P
Sbjct: 311 YGSIVRMLVRSSLILDTVLIDMYCKCRKVEDARRVFERMGERNLVSWNAMILGHCIRGSP 370
Query: 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF 361
E+G+ LF ++ G ++P TFIGV+CAC RAE+L EGR +F+QM D + +KPN+
Sbjct: 371 EDGLGLFDVMI-----GSKVAPXXSTFIGVLCACARAEMLAEGRSFFKQMTDAFGVKPNY 425
Query: 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421
AH+WCMANL A L EAEE LR + E + +MS ES+ W SLL LC F+ + ER+A
Sbjct: 426 AHFWCMANLLANLGLVGEAEEFLRSIAEFDGDMSRESLAWASLLGLCHFKRDAYLGERIA 485
Query: 422 KSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKL 481
K ++MDP++ + YQFLL +YAV+ QW++V+ V++L+K+RR+G + LVDLK +V
Sbjct: 486 KILIEMDPKNRACYQFLLIIYAVSAQWQNVSGVQKLIKERRLGIIARSSLVDLKNIVHNF 545
Query: 482 KV 483
KV
Sbjct: 546 KV 547
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6562284|emb|CAB62654.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/451 (49%), Positives = 316/451 (70%), Gaps = 30/451 (6%)
Query: 34 FGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93
FG YTV +++ I +C N V KAY S P Q + FY +++ GF+P+SYTFVSL
Sbjct: 44 FGDSSYTVSIYRSIGK--LYCANPVFKAYLVSSSPKQALGFYFDILRFGFVPDSYTFVSL 101
Query: 94 FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL 153
KT CV+ G MCHG A+K+G D LPV NSL++MY C GA+D A+ +FV++ RD+
Sbjct: 102 ISCIEKTCCVDSGKMCHGQAIKHGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDI 161
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213
+SWNSI++G VR+GD+ AAH+LFD MP++N++SWNIMIS Y + NPG S+ LFREM+++
Sbjct: 162 VSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRA 221
Query: 214 GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA 273
GF+GN+ T+ +L ACGRSAR E ALID+Y KC++V +A
Sbjct: 222 GFQGNESTLVLLLNACGRSARLKE---------------------ALIDMYGKCKEVGLA 260
Query: 274 QRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333
+R+FDS++ RN V WN MIL HC+HG+PE G++LF A++NG + PDE+TF+GV+C
Sbjct: 261 RRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGM-----LRPDEVTFVGVLC 315
Query: 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393
C RA L+++G+ Y+ M+D ++IKPNF H WCMANLY+ A EEAEE L+ +P+ ++
Sbjct: 316 GCARAGLVSQGQSYYSLMVDEFQIKPNFGHQWCMANLYSSAGFPEEAEEALKNLPD--ED 373
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
++ ES W +LLS RF G + E +AKS ++ DP ++ Y L+N+Y+V G+WEDV R
Sbjct: 374 VTPESTKWANLLSSSRFTGNPTLGESIAKSLIETDPLNYKYYHLLMNIYSVTGRWEDVNR 433
Query: 454 VRELMKKRRMGRMPGCRLVDLKEVVEKLKVG 484
VRE++K+R++GR+PGC LVDLKE+V L++G
Sbjct: 434 VREMVKERKIGRIPGCGLVDLKEIVHGLRLG 464
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 523 | ||||||
| TAIR|locus:2080898 | 530 | AT3G51320 [Arabidopsis thalian | 0.871 | 0.860 | 0.512 | 2e-136 | |
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.877 | 0.821 | 0.350 | 1.7e-73 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.864 | 0.846 | 0.331 | 1.1e-69 | |
| TAIR|locus:2159238 | 499 | AT5G61800 "AT5G61800" [Arabido | 0.864 | 0.905 | 0.331 | 1.4e-69 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.738 | 0.597 | 0.381 | 2.7e-68 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.866 | 0.716 | 0.321 | 7.2e-68 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.577 | 0.352 | 0.324 | 1.2e-67 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.866 | 0.886 | 0.327 | 1.5e-67 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.871 | 0.735 | 0.313 | 8.2e-67 | |
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.577 | 0.540 | 0.320 | 1.6e-65 |
| TAIR|locus:2080898 AT3G51320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
Identities = 239/466 (51%), Positives = 340/466 (72%)
Query: 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYS 63
L Q+ A LITSG F+++S W I LLK S+ FG YTV +++ I +C N V KAY
Sbjct: 38 LFQVHARLITSGNFWDSS-WAIRLLKSSSRFGDSSYTVSIYRSIGK--LYCANPVFKAYL 94
Query: 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELP 123
S P Q + FY +++ GF+P+SYTFVSL KT CV+ G MCHG A+K+G D LP
Sbjct: 95 VSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQVLP 154
Query: 124 VMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERN 183
V NSL++MY C GA+D A+ +FV++ RD++SWNSI++G VR+GD+ AAH+LFD MP++N
Sbjct: 155 VQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKN 214
Query: 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243
++SWNIMIS Y + NPG S+ LFREM+++GF+GN+ T+ +L ACGRSAR EGRSVH
Sbjct: 215 IISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHA 274
Query: 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEE 303
+RT L ++++DTALID+Y KC++V +A+R+FDS++ RN V WN MIL HC+HG+PE
Sbjct: 275 SLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEG 334
Query: 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363
G++LF A++NG + PDE+TF+GV+C C RA L+++G+ Y+ M+D ++IKPNF H
Sbjct: 335 GLELFEAMINGM-----LRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPNFGH 389
Query: 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423
WCMANLY+ A EEAEE L+ +P+++ ++ ES W +LLS RF G + E +AKS
Sbjct: 390 QWCMANLYSSAGFPEEAEEALKNLPDED--VTPESTKWANLLSSSRFTGNPTLGESIAKS 447
Query: 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
++ DP ++ Y L+N+Y+V G+WEDV RVRE++K+R++GR+PGC
Sbjct: 448 LIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGC 493
|
|
| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 165/471 (35%), Positives = 254/471 (53%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M++L QI A LI +GL + + L A +Y LVF IN+ F N +I+
Sbjct: 38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIR 97
Query: 61 AYSNSCVPDQGVVFYLQMIKNG--FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118
+S S P+ + ++ M+ + P T+ S+F + + G G HG+ +K G+
Sbjct: 98 GFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGL 157
Query: 119 DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178
+ + + N++++MY G + A +F+ M D+++WNS++ G + G + A LFD
Sbjct: 158 EDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDE 217
Query: 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG 238
MP+RN VSWN MISG+ ++G +L +FREM + + + TM S+L AC +G
Sbjct: 218 MPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQG 277
Query: 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH 298
R +H Y VR + N I+ TALID+Y KC +E VF+ + L CWN+MILG +
Sbjct: 278 RWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANN 337
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
G E + LF+ L + PD ++FIGV+ AC + + ++FR M + Y I+
Sbjct: 338 GFEERAMDLFSELERS-----GLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIE 392
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P+ HY M N+ GA L EEAE +++ MP + D +++W SLLS CR G V M +
Sbjct: 393 PSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEED-----TVIWSSLLSACRKIGNVEMAK 447
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
R AK +DP + Y L N YA G +E+ R LMK+R+M + GC
Sbjct: 448 RAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGC 498
|
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| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 154/464 (33%), Positives = 246/464 (53%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
+I A +I GL +SF ++ DY +F ++NP F N++I+AY+++
Sbjct: 28 KINASIIIHGLS-QSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86
Query: 66 CVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV 124
+ + Y Q+++ F +P+ +TF +F SCA G G HG K G F +
Sbjct: 87 SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVT 146
Query: 125 MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
N+LI+MY F + A +F +M RD+ISWNS++SG+ R G M A LF +M ++ +
Sbjct: 147 ENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI 206
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244
VSW MISGY+ G ++ FREM +G ++ ++ SVL +C + G+ +H Y
Sbjct: 207 VSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 245 TVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304
R + ALI++YSKC + A ++F M ++++ W+ MI G+ HG
Sbjct: 267 AERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGA 326
Query: 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364
I+ F + V P+ ITF+G++ AC + EG +YF M Y+I+P HY
Sbjct: 327 IETFNEMQRAKV-----KPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHY 381
Query: 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424
C+ ++ A A E A EI + MP M +S +W SLLS CR G + +
Sbjct: 382 GCLIDVLARAGKLERAVEITKTMP-----MKPDSKIWGSLLSSCRTPGNLDVALVAMDHL 436
Query: 425 VDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
V+++P+D Y L N+YA G+WEDV+R+R++++ M + PG
Sbjct: 437 VELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480
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| TAIR|locus:2159238 AT5G61800 "AT5G61800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 158/476 (33%), Positives = 255/476 (53%)
Query: 1 MKQLLQIQAHLITSGLFFN---------NSFWTINLLKHSADFGSP--DYTVLVFKCINN 49
+K L Q A ITSG N N + I + SA Y VF+ I N
Sbjct: 17 LKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASKEVVSYATSVFRFITN 76
Query: 50 PGTFCVNAVIKA---YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA--KTGCVE 104
P TFC N +I+ + S + + F+++M + P+ +TF +F +CA K G +
Sbjct: 77 PSTFCFNTIIRICTLHEPSSLSSKR--FFVEMRRRSVPPDFHTFPFVFKACAAKKNGDLT 134
Query: 105 RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV 164
H AL+ G+ +L +N+LI +Y +D A +F + RD++++N ++ G V
Sbjct: 135 LVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLV 194
Query: 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224
++ ++ A ELFD MP R++VSWN +ISGY++ + ++KLF EM+ G + ++ + S
Sbjct: 195 KAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVS 254
Query: 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN 284
L+AC +S + +G+++H YT R L + L T L+D Y+KC ++ A +F+ +D+
Sbjct: 255 TLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKT 314
Query: 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344
L WNAMI G +HG E + F +V+ I PD +TFI V+ C + L+ E
Sbjct: 315 LFTWNAMITGLAMHGNGELTVDYFRKMVSS-----GIKPDGVTFISVLVGCSHSGLVDEA 369
Query: 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404
R F QM Y + HY CMA+L A L EEA E++ +MP+D N + + W L
Sbjct: 370 RNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNRE-KLLAWSGL 428
Query: 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460
L CR G + + E+ A + P+D Y+ ++ +YA A +WE+V +VRE++ +
Sbjct: 429 LGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDR 484
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|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 157/412 (38%), Positives = 235/412 (57%)
Query: 73 VFYLQMIKNGFM-PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131
+FY +M+ + F+ PN +TF S+ +CAKTG ++ G HGLALK G + VM++L+ M
Sbjct: 114 LFY-EMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRM 172
Query: 132 YGCFGAMDCARNMF---------VQMSPR-----DLISWNSIVSGHVRSGDMSAAHELFD 177
Y G M AR +F V M+ R +++ WN ++ G++R GD AA LFD
Sbjct: 173 YVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFD 232
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M +R+VVSWN MISGYS +G ++++FREM K R N T+ SVL A R
Sbjct: 233 KMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLEL 292
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G +H Y + ++ + +L +ALID+YSKC +E A VF+ + N++ W+AMI G I
Sbjct: 293 GEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAI 352
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG+ + I F + AG + P ++ +I ++ AC L+ EGR+YF QM+ +
Sbjct: 353 HGQAGDAIDCFCKMRQ---AG--VRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGL 407
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
+P HY CM +L + L +EAEE + MP D+ ++W +LL CR QG V M
Sbjct: 408 EPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD-----VIWKALLGACRMQGNVEMG 462
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
+R+A +DM P D Y L N+YA G W +V+ +R MK++ + + PGC
Sbjct: 463 KRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514
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| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 151/469 (32%), Positives = 259/469 (55%)
Query: 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYTVLVFKCINNPGTFCVNAVIK 60
++LQI A ++ L + + +NL H A G +++ +F +P F A I
Sbjct: 44 EVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAIN 103
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
S + + DQ + Y+Q++ + PN +TF SL SC+ + G + H LK G+
Sbjct: 104 TASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGI 159
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ V L+++Y G + A+ +F +M R L+S ++++ + + G++ AA LFD M
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGR 239
ER++VSWN+MI GY++ G P +L LF++++ G D+ T+ + L+AC + GR
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299
+H + + ++ N+ + T LID+YSKC +E A VF+ +++V WNAMI G+ +HG
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHG 339
Query: 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359
++ ++LF + G + G + P +ITFIG + AC A L+ EG + F M Y IKP
Sbjct: 340 YSQDALRLFNEM-QG-ITG--LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419
HY C+ +L A + A E ++ M NM +S++W S+L C+ G + +
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNM-----NMDADSVLWSSVLGSCKLHGDFVLGKE 450
Query: 420 LAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+A+ + ++ ++ Y L N+YA G +E VA+VR LMK++ + + PG
Sbjct: 451 IAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPG 499
|
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| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 101/311 (32%), Positives = 183/311 (58%)
Query: 158 SIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217
+++ + + G M+ A+E+F+ + +R++VSWN MI+ ++S NP ++ +FR+M SG
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICY 540
Query: 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVF 277
+ ++++ L+AC + G+++HG+ ++ SL ++ ++ LID+Y+KC ++ A VF
Sbjct: 541 DCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVF 600
Query: 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337
+M ++N+V WN++I HGK ++ + LF +V + I PD+ITF+ +I +C
Sbjct: 601 KTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKS----GIRPDQITFLEIISSCCH 656
Query: 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
+ EG ++FR M + Y I+P HY C+ +L+ A EA E ++ MP D
Sbjct: 657 VGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPD----- 711
Query: 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457
+ +W +LL CR V + E + +D+DP + Y + N +A A +WE V +VR L
Sbjct: 712 AGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSL 771
Query: 458 MKKRRMGRMPG 468
MK+R + ++PG
Sbjct: 772 MKEREVQKIPG 782
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| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 154/470 (32%), Positives = 250/470 (53%)
Query: 1 MKQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIK 60
M + Q+ AH + +G+ T +LL+ + Y +F N TF N +I+
Sbjct: 1 MNGIKQLHAHCLRTGVDE-----TKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQ 55
Query: 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDF 120
AY P + +V Y + +G P+ +TF +F + A + H ++G +
Sbjct: 56 AYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFES 115
Query: 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180
+ +LI Y GA+ CAR +F +MS RD+ WN++++G+ R GDM AA ELFD MP
Sbjct: 116 DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP 175
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRGNDKTMASVLTACGRSARFNEGR 239
+NV SW +ISG+S++GN +LK+F M K + N T+ SVL AC GR
Sbjct: 176 RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGR 235
Query: 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH 298
+ GY NI + A I++YSKC ++VA+R+F+ + + RNL WN+MI H
Sbjct: 236 RLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATH 295
Query: 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
GK +E + LF ++ G PD +TF+G++ ACV ++ +G++ F+ M + +KI
Sbjct: 296 GKHDEALTLFAQMLRE----GE-KPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 350
Query: 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418
P HY CM +L +EA ++++ MP M ++++W +LL C F G V + E
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEAYDLIKTMP-----MKPDAVVWGTLLGACSFHGNVEIAE 405
Query: 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPG 468
+++ ++P + + N+YA +W+ V R+R+LMKK M + G
Sbjct: 406 IASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAG 455
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| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 148/472 (31%), Positives = 252/472 (53%)
Query: 2 KQLLQIQAHLITSGLFFNN----SFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNA 57
++L QI A ++ +GL ++ F + + S+DF P Y +VF + P TF N
Sbjct: 28 EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF-LP-YAQIVFDGFDRPDTFLWNL 85
Query: 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNG 117
+I+ +S S P++ ++ Y +M+ + N+YTF SL +C+ E H K G
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLG 145
Query: 118 VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177
+ ++ +NSLIN Y G A +F ++ D +SWNS++ G+V++G M A LF
Sbjct: 146 YENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFR 205
Query: 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237
M E+N +SW MISGY ++ +L+LF EM S ++ ++A+ L+AC + +
Sbjct: 206 KMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI 297
G+ +H Y +T ++ + +L LID+Y+KC ++E A VF ++ +++ W A+I G+
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357
HG E I F + G I P+ ITF V+ AC L+ EG+ F M Y +
Sbjct: 326 HGHGREAISKFMEMQK---MG--IKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNL 380
Query: 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417
KP HY C+ +L A L +EA+ +++MP + +++W +LL CR + +
Sbjct: 381 KPTIEHYGCIVDLLGRAGLLDEAKRFIQEMP-----LKPNAVIWGALLKACRIHKNIELG 435
Query: 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGC 469
E + + + +DP RY N++A+ +W+ A R LMK++ + ++PGC
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
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| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
Identities = 101/315 (32%), Positives = 171/315 (54%)
Query: 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGF 215
N+++ +V+ +S A +F + +++ VSWN MISG ++ LF M SG
Sbjct: 243 NALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGI 302
Query: 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275
+ + + SVL+AC + GR VH Y + +K + + TA++D+Y+KC +E A
Sbjct: 303 KPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALE 362
Query: 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335
+F+ + +N+ WNA++ G IHG E ++ F +V G P+ +TF+ + AC
Sbjct: 363 IFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVK---LG--FKPNLVTFLAALNAC 417
Query: 336 VRAELLTEGRKYFRQMIDF-YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394
L+ EGR+YF +M Y + P HY CM +L A L +EA E+++ MP D
Sbjct: 418 CHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVR 477
Query: 395 SFESIMWVSLLSLCRFQGAVA-MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
+I LS C+ +G + + + + SF+D++ +D Y L N++A +W+DVAR
Sbjct: 478 ICGAI-----LSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVAR 532
Query: 454 VRELMKKRRMGRMPG 468
+R LMK + + ++PG
Sbjct: 533 IRRLMKVKGISKVPG 547
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WVU0 | PP278_ARATH | No assigned EC number | 0.5123 | 0.9063 | 0.8943 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_57000048 | hypothetical protein (564 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 523 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-69 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-59 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-35 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 3e-69
Identities = 140/495 (28%), Positives = 239/495 (48%), Gaps = 45/495 (9%)
Query: 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNS 65
++ +++ +G + S +L++ GS VF + A+I Y +
Sbjct: 309 EMHGYVVKTGFAVDVSVCN-SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVM 125
+PD+ + Y M ++ P+ T S+ +CA G ++ G H LA + G+ + V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 126 NSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV 185
N+LI MY + + A E+F +PE++V+
Sbjct: 428 NALIEMYS-------------------------------KCKCIDKALEVFHNIPEKDVI 456
Query: 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245
SW +I+G + +L FR+M+ + + N T+ + L+AC R G+ +H +
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHV 515
Query: 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305
+RT + + L AL+DLY +C ++ A F+S +++V WN ++ G+ HGK +
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAV 574
Query: 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365
+LF +V V +PDE+TFI ++CAC R+ ++T+G +YF M + Y I PN HY
Sbjct: 575 ELFNRMVESGV-----NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629
Query: 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425
C+ +L A EA + KMP D +W +LL+ CR V + E A+
Sbjct: 630 CVVDLLGRAGKLTEAYNFINKMPITPD-----PAVWGALLNACRIHRHVELGELAAQHIF 684
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485
++DP Y L N+YA AG+W++VARVR+ M++ + PGC V++K V
Sbjct: 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744
Query: 486 FWRGGMKEEVNKMME 500
+K E+N ++E
Sbjct: 745 ESHPQIK-EINTVLE 758
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (527), Expect = 5e-59
Identities = 118/421 (28%), Positives = 200/421 (47%), Gaps = 41/421 (9%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
+I ++ + + +M ++G TFV + + A G G H LK
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
GV + V +LI+MY + GD+ A +
Sbjct: 253 TGVVGDTFVSCALIDMYS-------------------------------KCGDIEDARCV 281
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
FD MPE+ V+WN M++GY+ G +L L+ EM SG + T + ++ R A
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ H +RT +I+ +TAL+DLYSK ++E A+ VFD M +NL+ WNA+I G+
Sbjct: 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355
HG+ + +++F ++ VA P+ +TF+ V+ AC + L +G + F+ M + +
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVA-----PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
Query: 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415
+IKP HY CM L L +EA ++R+ P MW +LL+ CR +
Sbjct: 457 RIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-----FKPTVNMWAALLTACRIHKNLE 511
Query: 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475
+ A+ M P+ + Y LLN+Y +G+ + A+V E +K++ + P C +++K
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK 571
Query: 476 E 476
+
Sbjct: 572 K 572
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-36
Identities = 75/291 (25%), Positives = 132/291 (45%), Gaps = 37/291 (12%)
Query: 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115
NA+I Y + +G+ + M + P+ T S+ +C G G HG +K
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHEL 175
G ++ V NSLI MY G+ A +F +M +D
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD----------------------- 353
Query: 176 FDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARF 235
VSW MISGY K+G P +L+ + M + ++ T+ASVL+AC
Sbjct: 354 --------AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGH 295
+ G +H R L +++ ALI++YSKC+ ++ A VF ++ +++++ W ++I G
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465
Query: 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346
++ + E + F ++ ++ P+ +T I + AC R L G++
Sbjct: 466 RLNNRCFEALIFFRQML------LTLKPNSVTLIAALSACARIGALMCGKE 510
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 2e-36
Identities = 95/332 (28%), Positives = 151/332 (45%), Gaps = 51/332 (15%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
+ +V+LF C VE G AL + + + N++++M+
Sbjct: 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF------------ 131
Query: 145 FVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSL 204
VR G++ A +F MPER++ SWN+++ GY+K+G +L
Sbjct: 132 -------------------VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 205 KLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264
L+ M+ +G R + T VL CG GR VH + VR + ++ + ALI +Y
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324
KC V A+ VFD M R+ + WNAMI G+ +G+ EG++LF + S+ PD
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-----ELSVDPD 287
Query: 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN----LYAGAELTEEA 380
+T VI AC ELL + R + + Y +K FA + N +Y EA
Sbjct: 288 LMTITSVISAC---ELLGDER--LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412
E++ +M E D +S W +++S G
Sbjct: 343 EKVFSRM-ETKDAVS-----WTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 9e-36
Identities = 85/276 (30%), Positives = 131/276 (47%), Gaps = 22/276 (7%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211
D N ++ HV+ G + A LFD MPERN+ SW +I G +GN + LFREM
Sbjct: 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW 216
Query: 212 KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271
+ G +T +L A G+ +H ++T + + + ALID+YSKC +E
Sbjct: 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276
Query: 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331
A+ VFD M ++ V WN+M+ G+ +HG EE + L+ + + V S D+ TF +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-----SIDQFTFSIM 331
Query: 332 ICACVRAELLTEGRKYFRQMIDF---YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388
I R LL ++ +I I N A + +LY+ E+A + +MP
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA----LVDLYSKWGRMEDARNVFDRMP 387
Query: 389 EDNDNMSFESIMWVSLLSLCRFQG----AVAMVERL 420
N I W +L++ G AV M ER+
Sbjct: 388 RKN------LISWNALIAGYGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-35
Identities = 94/362 (25%), Positives = 162/362 (44%), Gaps = 51/362 (14%)
Query: 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGL 112
F N ++ Y+ + D+ + Y +M+ G P+ YTF + +C + RG H
Sbjct: 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212
Query: 113 ALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172
++ G + ++ V+N+LI MY G + AR +F +M RD ISWN+++SG+ +G+
Sbjct: 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272
Query: 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232
ELF M E V ++M T+ SV++AC
Sbjct: 273 LELFFTMRE-LSVDPDLM------------------------------TITSVISACELL 301
Query: 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMI 292
GR +HGY V+T ++ + +LI +Y A++VF M ++ V W AMI
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
Query: 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352
G+ +G P++ ++ + + ++SPDEIT V+ AC L G K
Sbjct: 362 SGYEKNGLPDKALETYA-----LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE--- 413
Query: 353 DFYKIKPNFAHYWCMAN----LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408
+ Y +AN +Y+ + ++A E+ +PE + I W S+++
Sbjct: 414 --LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD------VISWTSIIAGL 465
Query: 409 RF 410
R
Sbjct: 466 RL 467
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 20 NSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79
++F + L+ + G + VF + T N+++ Y+ ++ + Y +M
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMR 317
Query: 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139
+G + +TF + ++ +E H ++ G ++ +L+++Y +G M+
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 140 CARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199
ARN+F +M ++LISWN+ +I+GY G
Sbjct: 378 DARNVFDRMPRKNLISWNA-------------------------------LIAGYGNHGR 406
Query: 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSV 241
++++F M+ G N T +VL+AC S +G +
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPER----NVVSWNIMISGYSK 196
D++++N+++ G+ + G + A +LF+ M +R NV +++I+I G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231
+VV++N +I GY K G +LKLF EM K G + N T + ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 203 SLKLFREM-MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261
+L+LF + F T +++ AC ++V+ + + +P+ + ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308
++ KC + A+R+FD M +RNL W +I G G E LF
Sbjct: 166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 77/382 (20%), Positives = 157/382 (41%), Gaps = 77/382 (20%)
Query: 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132
VF+ +M+ G N +TF +L CA+ G V + +G+ V + V N+LI+
Sbjct: 494 VFH-EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 133 GCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVS 186
G GA+D A ++ +M D I+ +++ +G + A E++ ++ E N+
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 187 ----WNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242
+ I ++ S+ G+ +L ++ +M K G
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG---------------------------- 644
Query: 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----VCWNAMILGHCIH 298
+KP+ + +AL+D+ ++ A + + + V ++++ +G C +
Sbjct: 645 -------VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL-MGACSN 696
Query: 299 GKP-EEGIKLFTAL----VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353
K ++ ++L+ + + TV+ T +I A L + + +M
Sbjct: 697 AKNWKKALELYEDIKSIKLRPTVS---------TMNALITALCEGNQLPKALEVLSEMKR 747
Query: 354 FYKIKPNFAHYWCMANLYAGAELTEEAE---EILRKMPEDNDNMSFESIMWVSLLSLC-- 408
+ PN Y + L +E ++A+ ++L + ED + +M + LC
Sbjct: 748 L-GLCPNTITY---SILLVASERKDDADVGLDLLSQAKEDGIKPNL--VMCRCITGLCLR 801
Query: 409 RFQGAVAMVERLAKSFVDMDPQ 430
RF+ A A+ E + SF PQ
Sbjct: 802 RFEKACALGEPVV-SFDSGRPQ 822
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215
V++N +ISGY K+G +L+LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 35/169 (20%)
Query: 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249
+IS +KSG ++F EM+ +G N T +++ C R+ + + +G +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFT 309
+KP+ ++ ALI S C + R FD +A+ P
Sbjct: 538 VKPDRVVFNALI---SACGQSGAVDRAFDVLAEMK------------AETHP-------- 574
Query: 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358
I PD IT ++ AC A + ++ + QMI Y IK
Sbjct: 575 -----------IDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNIK 611
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99
P N +I Y ++ + + +M K G PN YT+ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND 219
V++N +I G K+G +L+LF+EM + G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 5/167 (2%)
Query: 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247
N + G +LKL M + ++ ++ C EG V +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKL 307
+ + L A++ ++ + ++ A VF M +R+L WN ++ G+ G +E + L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354
+ ++ AG + PD TF V+ C L GR+ ++ F
Sbjct: 175 YHRML---WAG--VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 284 NLVCWNAMILGHCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVR 337
++V +N +I G+C GK EE +KLF + G I P+ T+ +I +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNV 184
+++NS++SG+ ++G + A ELF M E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM 210
+ +VV++N +I G ++G +++L EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.33 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.22 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.04 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.91 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.79 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.64 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.5 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.5 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.23 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.16 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.14 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.05 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.94 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.92 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.91 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.83 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.8 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.77 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.61 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.57 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.52 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.51 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.49 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.46 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.44 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.18 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.05 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.88 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.76 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.64 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.49 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.48 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.35 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.3 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.28 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.18 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.16 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.05 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.91 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.76 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.75 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.7 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.67 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.61 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.59 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.56 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.11 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.05 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.04 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.56 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.44 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.37 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.06 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.98 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.98 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.61 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.52 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.48 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.46 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.45 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.43 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.4 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.94 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.94 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.75 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.61 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.29 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.92 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.88 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.71 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 91.7 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.55 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.26 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.73 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.69 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.55 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.46 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.28 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.24 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.2 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.13 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.96 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.56 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.55 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.22 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.19 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.02 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.96 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.87 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.58 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.51 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.39 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.96 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.94 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.31 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.15 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.14 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.81 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.78 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.13 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.05 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.67 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 85.28 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 85.15 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 85.02 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.76 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.48 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.52 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.09 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 83.07 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 82.97 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.61 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.33 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 81.88 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 81.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.68 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.9 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.7 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.53 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=597.78 Aligned_cols=487 Identities=30% Similarity=0.541 Sum_probs=452.4
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..++++|..+.+.|+. +++.+++.|+.+|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.
T Consensus 204 ~~~~~~~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 204 ARGREVHAHVVRFGFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhHHHHHHHHHHcCCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4578999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.+||..+||++|.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888887
Q ss_pred HHHhcCCHHHHHHHHh----------------------------------------------------------------
Q 038200 162 GHVRSGDMSAAHELFD---------------------------------------------------------------- 177 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~---------------------------------------------------------------- 177 (523)
+|++.|++++|.++|+
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 7665555555555554
Q ss_pred ------cCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 038200 178 ------IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251 (523)
Q Consensus 178 ------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (523)
+|.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 44455666677777777777777777777777765 48999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.| +.||..||+.+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-----~~Pd~~T~~~l 595 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-----VNPDEVTFISL 595 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCcccHHHH
Confidence 99999999999999999999999999999 8999999999999999999999999999999999 99999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
+.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|.+++.+|..+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-----~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-----ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999767999999999999999999999999999999997 799999999999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC---CCc
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH---FWR 488 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 488 (523)
|+.+.++...+++.+++|+++..|..|.++|+..|+|++|.++.+.|+++|+++.|+++|+++++.+|.|..+| |+.
T Consensus 671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 778
Q ss_pred hHHHHHHHHHHhc
Q 038200 489 GGMKEEVNKMMEC 501 (523)
Q Consensus 489 ~~~~~~l~~~~~~ 501 (523)
++..+.|+++.+.
T Consensus 751 ~~i~~~l~~l~~~ 763 (857)
T PLN03077 751 KEINTVLEGFYEK 763 (857)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=568.78 Aligned_cols=485 Identities=24% Similarity=0.418 Sum_probs=464.9
Q ss_pred chHhHHHHHHHHhC-CCCCChhHHHHHHHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHH
Q 038200 2 KQLLQIQAHLITSG-LFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYL 76 (523)
Q Consensus 2 ~~~~~i~~~~~~~g-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 76 (523)
++|..++..|.+.+ .. ++..+|+.++.+|++.++++.|.+++..|. .||..+||.++..|++.|+++.|.++|+
T Consensus 104 ~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 46788899998875 66 899999999999999999999999998875 5899999999999999999999999999
Q ss_pred HHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCC
Q 038200 77 QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS----PRD 152 (523)
Q Consensus 77 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 152 (523)
+|. .||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+. .+|
T Consensus 183 ~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 183 EMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred cCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 996 489999999999999999999999999999999999999999999999999999999999988775 579
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
..+|++++.+|++.|++++|.++|++|.++|+.+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
|++++|.+++..|.+.|+.|+..++++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
+.| +.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|.
T Consensus 419 ~~g-----~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---- 489 (697)
T PLN03081 419 AEG-----VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---- 489 (697)
T ss_pred HhC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----
Confidence 999 99999999999999999999999999999999877999999999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLV 472 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 472 (523)
+.|+..+|+.++.+|..+|+.+.|..+++++.+++|++..+|..|+++|++.|+|++|.+++++|+++|+.+.|+++|+
T Consensus 490 -~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 490 -FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred -CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCeEEEEecCC---CCchHHHHHHHHHHhc
Q 038200 473 DLKEVVEKLKVGH---FWRGGMKEEVNKMMEC 501 (523)
Q Consensus 473 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~ 501 (523)
++.+.+|.|..+| |+.++..+.++++.+.
T Consensus 569 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 569 EVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred EECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999998 7777777776665554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=536.21 Aligned_cols=490 Identities=23% Similarity=0.419 Sum_probs=400.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..++++|..+.+.|.. ++..+++.|+..|+++|+++.|.++|++|++||.++||.+|.+|++.|++++|+++|++|...
T Consensus 103 ~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~ 181 (857)
T PLN03077 103 EEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181 (857)
T ss_pred HHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 3578899999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|+..+++..+.+++..+.+.|+.||..++|.|+.+|++.|+++.|.++|++|..+|..+||++|.
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~ 261 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777666666666
Q ss_pred HH----------------------------------------------------------------------HhcCCHHH
Q 038200 162 GH----------------------------------------------------------------------VRSGDMSA 171 (523)
Q Consensus 162 ~~----------------------------------------------------------------------~~~~~~~~ 171 (523)
+| ++.|++++
T Consensus 262 ~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 341 (857)
T PLN03077 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHH
Confidence 54 45666677
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 038200 172 AHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK 251 (523)
Q Consensus 172 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (523)
|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 77777777778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
|+..++++|+++|+++|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. + +.||..||+.+
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-----~~pd~~t~~~l 495 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-----LKPNSVTLIAA 495 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-----CCCCHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 4 78999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCC------------------------------ChHHHHHHHHHHHcCCChHHHH
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKP------------------------------NFAHYWCMANLYAGAELTEEAE 381 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~ 381 (523)
+.+|++.|..+.+.+++..+.+. |+.+ |..+|+.||.+|++.|+.++|.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 99888888888888888777765 6655 4555555555555556666666
Q ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
++|++|.+ .|+.||..||+.++.+|.+.|++++|.++|+.|.+ ..| +..+|..++.+|.+.|++++|.+++++|
T Consensus 575 ~lf~~M~~--~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 575 ELFNRMVE--SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHH--cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 66666652 34566666666666666666666666666666652 233 4456666666666666666666666655
Q ss_pred HhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 459 KKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.++|++.. +...+..... ..+.+.+....+++++++|++.....
T Consensus 652 ---~~~pd~~~----~~aLl~ac~~-~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 652 ---PITPDPAV----WGALLNACRI-HRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred ---CCCCCHHH----HHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCcchHH
Confidence 13333321 1111111111 12344455556677777777665444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-64 Score=514.69 Aligned_cols=489 Identities=13% Similarity=0.202 Sum_probs=421.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+.|+++++.|.+.|+.+++...++.++..|.+.|.+++|.++|+.|..||..+|+.+|.+|++.|+++.|.++|+.|.+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~ 466 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 56889999999999865888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCcchHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS----PRDLISWN 157 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 157 (523)
|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+
T Consensus 467 Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 57889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCC------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 158 SIVSGHVRSGDMSAAHELFDIMP------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 158 ~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 99999999999999999999884 378899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
.|++++|..+|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+ |+..+|+++|.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864 7888999999999999999999999
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|++|...+ +.||..+|+.||.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++.|++++|.+++.+|
T Consensus 707 f~eM~~~g-----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 707 YEDIKSIK-----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999888 8899999999999999999999999999999886 99999999999999999999999999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHhhcC--CCChhhHHHHHHHH
Q 038200 388 PEDNDNMSFESIMWVSLLSLCRF----Q-------------------GAVAMVERLAKSFVDMD--PQDFSRYQFLLNVY 442 (523)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 442 (523)
.+ .|+.||..+|+.++..|.+ . +..+.|..+|++|.+.+ | +..+|..++.++
T Consensus 781 ~k--~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P-d~~T~~~vL~cl 857 (1060)
T PLN03218 781 KE--DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP-TMEVLSQVLGCL 857 (1060)
T ss_pred HH--cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Confidence 84 4688999999988866542 1 12367888888888744 4 667888888777
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCc
Q 038200 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 506 (523)
+..+....+..+++.|...+..++. ..++..++.+.. ...+|+..++++.+..--..
T Consensus 858 ~~~~~~~~~~~m~~~m~~~~~~~~~----~~y~~Li~g~~~---~~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 858 QLPHDATLRNRLIENLGISADSQKQ----SNLSTLVDGFGE---YDPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred cccccHHHHHHHHHHhccCCCCcch----hhhHHHHHhhcc---ChHHHHHHHHHHHHcCCCCC
Confidence 7888888888888877655544333 224444444421 12568888888877644333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-62 Score=503.21 Aligned_cols=450 Identities=17% Similarity=0.229 Sum_probs=415.9
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
|..++..|. . |+..+|+.++.+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.
T Consensus 425 Al~lf~~M~----~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 425 AFRFAKLIR----N-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHcC----C-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 444555443 4 799999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC------CCCc
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS------PRDL 153 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~ 153 (523)
+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 500 ~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 5799
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPE----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC 229 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 229 (523)
.+|+++|.+|++.|++++|.++|++|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999975 678999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
++.|++++|.++++.|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999994 589999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----C-------
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----A------- 374 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------- 374 (523)
++|++|...| +.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|+.+|.+ +
T Consensus 740 elf~eM~~~G-----i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 740 EVLSEMKRLG-----LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999 9999999999999999999999999999999997 999999999999876432 1
Q ss_pred ------------CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCChhhHHHHHHH
Q 038200 375 ------------ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD-MDPQDFSRYQFLLNV 441 (523)
Q Consensus 375 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 441 (523)
+..++|..+|++|.+ .|+.||..+|+.++.++...+....+..+++.+.. -.+.+..+|+.|+++
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~--~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETIS--AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 224679999999994 56999999999999877788889998888887653 334477899999998
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCCc
Q 038200 442 YAVAGQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8432 368999999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=476.39 Aligned_cols=450 Identities=18% Similarity=0.224 Sum_probs=411.5
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+.++++|..|.+.|+. |++.+++.|+.+|+++|++++|.++|++|++||.++||.+|.+|++.|++++|+++|++|.+.
T Consensus 140 ~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 140 RCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 4578999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++|+++|+++|++++|.++|++|.++|..+||++|.
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~ 298 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLA 298 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH
Q 038200 162 GHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE 237 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 237 (523)
+|++.|+.++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++
T Consensus 299 ~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~ 378 (697)
T PLN03081 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378 (697)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHH
Confidence 9999999999999999995 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
|.++|+.|. .||..+||++|.+|++.|+.++|.++|++|. .||..||++++.+|++.|.+++|.++|+.|.+
T Consensus 379 A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 379 ARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999985 4789999999999999999999999999995 48999999999999999999999999999986
Q ss_pred -CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 314 -GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 314 -~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.| +.|+..+|+.++.+|++.|++++|.++++++ ++.|+..+|+.|+.+|...|+++.|..+++++.+
T Consensus 455 ~~g-----~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--- 522 (697)
T PLN03081 455 NHR-----IKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--- 522 (697)
T ss_pred hcC-----CCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---
Confidence 46 8999999999999999999999999999876 6789999999999999999999999999999984
Q ss_pred CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHHHH--------H--HH-HhcCChhHHHHHHHHH
Q 038200 393 NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQFLL--------N--VY-AVAGQWEDVARVRELM 458 (523)
Q Consensus 393 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~--------~--~~-~~~g~~~~A~~~~~~m 458 (523)
..| +..+|..++..|.+.|++++|.++++.|.+.+-. ...+|..+. . .. ....-++...++..+|
T Consensus 523 -~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 523 -MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred -CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 455 4678999999999999999999999999975421 111111110 0 00 0011245567788899
Q ss_pred HhCCCccCCce
Q 038200 459 KKRRMGRMPGC 469 (523)
Q Consensus 459 ~~~~~~~~~~~ 469 (523)
++.|+.|+...
T Consensus 602 ~~~gy~~~~~~ 612 (697)
T PLN03081 602 SEYGYVAEENE 612 (697)
T ss_pred HHcCCCCCcch
Confidence 99999887654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=280.15 Aligned_cols=483 Identities=13% Similarity=0.047 Sum_probs=339.0
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
.+...+..+.+.. |.++..+..+...+...|++++|.+.|+.... .+...+..++..+.+.|++++|..+++.+.
T Consensus 381 ~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 381 KAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555666665543 45777778888888888888888888876542 233455667777888888888888888877
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchH
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISW 156 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 156 (523)
... +++..++..+...+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|+++. +.+..++
T Consensus 459 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 459 KKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 642 556667777888888888888888888887776433 55667777777888888888888887775 3355677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..+...+.+.|+.++|...|+++.+ .+...+..++..+...|++++|..+++.+.+.. +.+..+|..+..++...|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 7777777788888888888877643 345566777777788888888888888777653 456667777777788888
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++|...++.+.+.. +.+...+..+..++...|++++|..+|+++.+ .+..++..++..+...|++++|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888777654 33566677777777778888888888777644 3456777777777777888888888777
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
+.... +++...+..+...+...|++++|...|+.+... .|+..++..++.++.+.|++++|.+.++++.+.
T Consensus 695 ~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 695 LQKQH------PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHhhC------cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77754 345566666777777777788787777777663 344466666777777777777777777777653
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 470 (523)
.+.+...+..+...|...|+.++|...++++.+..|+++.++..++.++...|+ .+|+.++++..+.. +.++..
T Consensus 766 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~- 839 (899)
T TIGR02917 766 ---HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAI- 839 (899)
T ss_pred ---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHH-
Confidence 344566666667777777777777777777777777777777777777777777 66777777776542 112211
Q ss_pred EEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
...........++.+++++.++++++..|++.....
T Consensus 840 ----~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 875 (899)
T TIGR02917 840 ----LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875 (899)
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 111111222335677777777777777777666554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-30 Score=274.87 Aligned_cols=473 Identities=10% Similarity=0.037 Sum_probs=399.2
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
.+...+....+.. |........++..+.+.|++++|.++++.+. +.+...|+.+...+...|++++|.+.|+++.
T Consensus 415 ~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 415 EAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3555566666554 3466677788889999999999999998875 3466789999999999999999999999998
Q ss_pred HCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchH
Q 038200 80 KNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISW 156 (523)
Q Consensus 80 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 156 (523)
+.. +.+...+..+...+...|++++|.+.++.+.+.++. +..++..+...+.+.|+.++|...++++. +.+...+
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 570 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHH
Confidence 764 445567788888899999999999999999987644 78889999999999999999999999985 3456778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..+...+...|++++|..+++.+.+ .+...|..+..++...|++++|...|+.+.+.. +.+...+..+..++...|
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 8899999999999999999999864 467889999999999999999999999998864 446677888999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++|..+++.+.+.. +.+..++..++..+...|++++|..+++.+.+ .+...+..+...+...|++++|...|++
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 728 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRK 728 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998864 34678889999999999999999999999865 3567788889999999999999999999
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
+.... |+..++..+..++.+.|++++|.+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.+.
T Consensus 729 ~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 729 ALKRA-------PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHhhC-------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 99854 6667888899999999999999999999988 45667889999999999999999999999999864
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR 470 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 470 (523)
.+++...+..+...+...|+ .+|..+++++.+..|+++..+..++.+|...|++++|.++++++.+.+.. ++..
T Consensus 800 ---~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~- 873 (899)
T TIGR02917 800 ---APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAI- 873 (899)
T ss_pred ---CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHH-
Confidence 35577888889999999999 88999999999999999999999999999999999999999999887643 4432
Q ss_pred EEEeCCeEEEEecCCCCchHHHHHHHHHHh
Q 038200 471 LVDLKEVVEKLKVGHFWRGGMKEEVNKMME 500 (523)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 500 (523)
.... .......++.+++.+.++++++
T Consensus 874 ---~~~l-~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 874 ---RYHL-ALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ---HHHH-HHHHHHcCCHHHHHHHHHHHhC
Confidence 2222 2233334578899988888763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-22 Score=218.39 Aligned_cols=483 Identities=10% Similarity=0.019 Sum_probs=337.9
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcccH-----------------HHHHHHHHh
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTFCV-----------------NAVIKAYSN 64 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~ 64 (523)
+++.+..+.. ++|.++.++..++..+.+.|+.++|.+.+++..+ |+...+ ..+.+.+.+
T Consensus 47 a~~~l~kl~~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~ 124 (1157)
T PRK11447 47 VRQSLYRLEL--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLAT 124 (1157)
T ss_pred HHHHHHHHHc--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 4444554444 3567999999999999999999999999988753 332221 233446788
Q ss_pred CCCchHHHHHHHHHHHCCCCCCccc-HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHH
Q 038200 65 SCVPDQGVVFYLQMIKNGFMPNSYT-FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143 (523)
Q Consensus 65 ~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (523)
.|++++|++.|+.+.+.+ +|+... ...+.......|+.++|...++.+.+..+. +...+..+...+...|+.++|++
T Consensus 125 ~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 125 TGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred CCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999999998753 344321 111122223458999999999999988644 67788889999999999999999
Q ss_pred HHhhcCCCCc-----------------------chHH----------------------------------HHHHHHHhc
Q 038200 144 MFVQMSPRDL-----------------------ISWN----------------------------------SIVSGHVRS 166 (523)
Q Consensus 144 ~~~~~~~~~~-----------------------~~~~----------------------------------~ll~~~~~~ 166 (523)
.|+++..... ..+. .....+...
T Consensus 203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~ 282 (1157)
T PRK11447 203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS 282 (1157)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence 9887642100 0000 112335677
Q ss_pred CCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHh
Q 038200 167 GDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG-NDKTM------------ASVLTACG 230 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~ll~~~~ 230 (523)
|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+ ......+.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999988765 3 67788899999999999999999999988754221 11111 12244567
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHH-----------------
Q 038200 231 RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNA----------------- 290 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~----------------- 290 (523)
+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++.+ | +...+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8899999999999998874 33566777788899999999999999988754 2 2222221
Q ss_pred -------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHH
Q 038200 291 -------------------------MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEG 344 (523)
Q Consensus 291 -------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 344 (523)
+...+...|++++|++.|++.++. .|+ ...+..+...|.+.|++++|
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-------~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-------DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 233455679999999999999885 354 56777888899999999999
Q ss_pred HHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--------------------------------
Q 038200 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-------------------------------- 392 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------------------- 392 (523)
...++++.+. .+.++..+..+...+...|+.++|...++.+.....
T Consensus 515 ~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999998873 233444443343444445555555555544431100
Q ss_pred -----CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 393 -----NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 393 -----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
..+.+...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|.+.++...+.. ++.
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~ 670 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDS 670 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCC
Confidence 0123344556677788999999999999999999999999999999999999999999999999876542 111
Q ss_pred ceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCc
Q 038200 468 GCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRS 506 (523)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 506 (523)
.. ....+.......++.+++.+.++++++..|++.
T Consensus 671 ~~----~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 671 LN----TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred hH----HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 11 101111111223678889999999998876654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-23 Score=191.24 Aligned_cols=406 Identities=12% Similarity=0.116 Sum_probs=211.1
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCC--C-----------------------------------CcccHHHHHHHHHhC
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINN--P-----------------------------------GTFCVNAVIKAYSNS 65 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----------------------------------~~~~~~~ll~~~~~~ 65 (523)
-...|..-.-+.|++++|++.-..+-. | -..+|..+...+-..
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 355566666778888888876543211 1 112355555555555
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchH-HHHHHHHHHccCChHHHHHH
Q 038200 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPV-MNSLINMYGCFGAMDCARNM 144 (523)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~ 144 (523)
|+++.|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.+ |+... ...+...+...|++.+|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 55555555555555532 2233455555555555555555555555555432 22222 22233333444555555555
Q ss_pred HhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-
Q 038200 145 FVQMSP--R-DLISWNSIVSGHVRSGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG- 217 (523)
Q Consensus 145 ~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p- 217 (523)
+.+..+ | =.+.|..+...+...|+...|++.|++..+ |+ ...|-.|...|...+.++.|...|.+.... .|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 554432 2 234555555555555555555555555544 21 344555555555555555555555555442 23
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
....+..+...|..+|.++.|+..|++.++.. +.-...|+.|..++-..|+..+|.+.|.+... ....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 23344455555555555555555555555532 11245555555555555555555555555433 233455555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYA 372 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 372 (523)
|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..|++... ++|+ ...|+.+...|.
T Consensus 364 ~~E~~~~e~A~~ly~~al~-------v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE-------VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHhccchHHHHHHHHHHh-------hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHH
Confidence 5555555555555555555 3343 33455555555555555555555555542 4444 345555555555
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
..|+.+.|.+.+.+.+. +.|. ...++.|...|...|+..+|+..++.+++++|+.|.+|..++.++.-..+|
T Consensus 434 e~g~v~~A~q~y~rAI~----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HhhhHHHHHHHHHHHHh----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 55555555555555553 3343 344555555555555555555555555555555555555555554444333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=194.72 Aligned_cols=468 Identities=10% Similarity=0.063 Sum_probs=337.5
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC-------
Q 038200 10 HLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG------- 82 (523)
Q Consensus 10 ~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------- 82 (523)
.|+..++.-..+.++...++.--.........+-|..-.+.+. .-..|..-.-+.|++++|++-....-+.+
T Consensus 7 ~m~s~~~~~~~~~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~-~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~l 85 (966)
T KOG4626|consen 7 NMISQPVFLQLREAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD-DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERL 85 (966)
T ss_pred hHhhcchhhccHHHHHHHhccCcccccchHHHHHhccCCccch-hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccce
Confidence 3555554423444444444433333333334444443332222 23445555667788888877655433221
Q ss_pred --------------------------CCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 83 --------------------------FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 83 --------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
.+.-..+|..+.+.+-..|++.+|+.+++.+++..+. ....|-.+..++...|
T Consensus 86 lll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~ 164 (966)
T KOG4626|consen 86 LLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG 164 (966)
T ss_pred eeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC
Confidence 0112346777788888888888888888888887544 6778888888888888
Q ss_pred ChHHHHHHHhhcCCCCcch---HHHHHHHHHhcCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 137 AMDCARNMFVQMSPRDLIS---WNSIVSGHVRSGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 137 ~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
+.+.|.+.|.+...-++.. ...+...+...|++++|...+.+..+ |. ...|+.|...+-..|+...|+..|++.
T Consensus 165 ~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eA 244 (966)
T KOG4626|consen 165 DLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEA 244 (966)
T ss_pred CCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence 8888888887776433322 22234445557888888888877654 33 467888888888899999999999888
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-hH
Q 038200 211 MKSGFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-LV 286 (523)
Q Consensus 211 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~ 286 (523)
++. .|+ ...|-.|...|...+.++.|...|.+..... +....++..+...|...|.++.|+..|++..+ |+ ..
T Consensus 245 vkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~ 321 (966)
T KOG4626|consen 245 VKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPD 321 (966)
T ss_pred hcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchH
Confidence 874 454 4578888888888899999998888887753 23567788888889999999999999998865 43 46
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHY 364 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 364 (523)
.|+.|..++...|++.+|.+.|.+.... .|+ ....+.|...+...|.+++|..+|....+ +.|. ....
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l-------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~ 391 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRL-------CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAH 391 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhh
Confidence 8999999999999999999999998884 455 66888899999999999999999998876 3343 5678
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+.|...|-..|++++|+..+++.+. +.|+ ...++.+...|...|+...|.+.+.+++.++|.-.+++..|+.+|.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~Ykealr----I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALR----IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHh----cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8899999999999999999999884 6776 6778888888999999999999999999999988888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC--CCchHHHHHHHHHHhc
Q 038200 444 VAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH--FWRGGMKEEVNKMMEC 501 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 501 (523)
..|+..+|+.-|++..+.. +..|+- +.+++|+.-.-. ...+..+..|.++.+.
T Consensus 468 DsGni~~AI~sY~~aLklk-PDfpdA----~cNllh~lq~vcdw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLK-PDFPDA----YCNLLHCLQIVCDWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred ccCCcHHHHHHHHHHHccC-CCCchh----hhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 9999999999999886643 222322 556666443222 4455566666666654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-21 Score=207.98 Aligned_cols=412 Identities=10% Similarity=-0.024 Sum_probs=327.8
Q ss_pred HHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc---cHH---------
Q 038200 27 LLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY---TFV--------- 91 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~--------- 91 (523)
+...+...|++++|+..|++.. +.+...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 3456778899999999998764 3467788899999999999999999999998753 3321 121
Q ss_pred ---HHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHh
Q 038200 92 ---SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVR 165 (523)
Q Consensus 92 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~ 165 (523)
.....+.+.|++++|...++++++..+. +...+..+..++...|++++|++.|++... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 2234567889999999999999998643 677888899999999999999999999873 34556666666664
Q ss_pred cCCHHHHHHHHhcCCCCC------------hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 166 SGDMSAAHELFDIMPERN------------VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
.++.++|+..++.+.... ...+..+...+...|++++|.+.|++.++.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 567899999998876421 2235566778889999999999999999863 335667788899999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC----Ch---------HHHHHHHHHHHhcCC
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR----NL---------VCWNAMILGHCIHGK 300 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~---------~~~~~li~~~~~~g~ 300 (523)
++++|...++++.+... .+...+..+...+...++.++|+..++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 99999999999987642 34555555666678889999999999988642 11 112345667889999
Q ss_pred hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHH
Q 038200 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 301 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. -+.++..+..++..|...|++++|
T Consensus 589 ~~eA~~~l~~----------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 589 EAEAEALLRQ----------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHHHh----------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999872 2455667778888999999999999999999983 455688999999999999999999
Q ss_pred HHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh------hhHHHHHHHHHhcCChhHHHH
Q 038200 381 EEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF------SRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~ 453 (523)
++.++.+.+. .| +...+..+..++...|++++|.++++++.+..|+++ .++..++.++...|++++|+.
T Consensus 657 ~~~l~~ll~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 657 RAQLAKLPAT----ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHhcc----CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999998853 34 455666677788899999999999999998766543 366778999999999999999
Q ss_pred HHHHHHh
Q 038200 454 VRELMKK 460 (523)
Q Consensus 454 ~~~~m~~ 460 (523)
.|++...
T Consensus 733 ~y~~Al~ 739 (1157)
T PRK11447 733 TYKDAMV 739 (1157)
T ss_pred HHHHHHh
Confidence 9998864
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-21 Score=193.50 Aligned_cols=256 Identities=11% Similarity=0.045 Sum_probs=210.0
Q ss_pred cCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 197 SGNPGCSLKLFREMMKSG-FRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
.+++++|.+.|+...+.+ ..| ....+..+..++...|++++|...+++..+.. +.....|..+...+...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 468999999999998865 233 44577888888899999999999999999864 224668888999999999999999
Q ss_pred HHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 275 RVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 275 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
..|+++.+ .+...|..+...+...|++++|...|++.+... +.+...+..+..++.+.|++++|+..|++.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998754 357789999999999999999999999999854 234667778888999999999999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc---hHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF---ESI-MWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.+ ..+.++..+..+..++...|++++|.+.|++..+......+ +.. .++.....+...|++++|..+++++.++
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 87 34556888999999999999999999999998754221111 111 1222222334469999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 428 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+|++..++..++.++.+.|++++|+..|++..+.
T Consensus 538 ~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9998889999999999999999999999998664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-19 Score=186.50 Aligned_cols=168 Identities=11% Similarity=-0.027 Sum_probs=106.1
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
|...+...++. +|.++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++...
T Consensus 63 A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~ 137 (987)
T PRK09782 63 AIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ 137 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh
Confidence 34455555544 466799999999999999999999999988753 3222333333222 7888888888888765
Q ss_pred CCCCC-cccHHHH----------------------------------------HHHHHccCCchHHHHHHHHHHHhCCCC
Q 038200 82 GFMPN-SYTFVSL----------------------------------------FGSCAKTGCVERGGMCHGLALKNGVDF 120 (523)
Q Consensus 82 ~~~p~-~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (523)
. |+ ...+..+ ...|.+.+++++|+.++..+.+.++.
T Consensus 138 ~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl- 214 (987)
T PRK09782 138 Q--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL- 214 (987)
T ss_pred C--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-
Confidence 3 22 2222222 34444555566666666666655433
Q ss_pred CchHHHHHHHHHHc-cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038200 121 ELPVMNSLINMYGC-FGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP 180 (523)
Q Consensus 121 ~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 180 (523)
+..-...|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++.
T Consensus 215 ~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 215 SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 34444455555555 244 555555554334466677788888899999999999998885
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-21 Score=182.93 Aligned_cols=291 Identities=10% Similarity=0.037 Sum_probs=197.2
Q ss_pred cCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHH
Q 038200 166 SGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN---DKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~ 239 (523)
.|++++|...|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444432 1 233455555555555555555555555554321111 133455555555566666666
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN--------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666555542 2344555556666666666666666665553311 123456777788899999999999998
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|.+.++++.+
T Consensus 207 l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 207 LAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 8743 223557777888899999999999999999874 2222246678899999999999999999999885
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCccCCc
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV---AGQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
..|+...+..++..+...|++++|..+++++.+..|+++ .+..++..+.. .|+.+++..++++|.+++++++|+
T Consensus 278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 356666667888889999999999999999999999765 56666655553 568999999999999999999997
Q ss_pred e
Q 038200 469 C 469 (523)
Q Consensus 469 ~ 469 (523)
.
T Consensus 355 ~ 355 (389)
T PRK11788 355 Y 355 (389)
T ss_pred E
Confidence 5
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-19 Score=181.80 Aligned_cols=406 Identities=12% Similarity=-0.019 Sum_probs=283.1
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.++....-.+.+....|+.++|+++|....+ .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 36777888888899999999999999988653 334458889999999999999999999988863 44556677888
Q ss_pred HHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHH
Q 038200 95 GSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--R-DLISWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~ 171 (523)
..+...|++++|...++.+++..+. +.. +..+..++...|+.++|+..++++.. | +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 8888999999999999999987433 556 88888999999999999999999873 3 55566777788888899999
Q ss_pred HHHHHhcCCC-CCh------hHHHHHHHHHHh-----cCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 038200 172 AHELFDIMPE-RNV------VSWNIMISGYSK-----SGNP---GCSLKLFREMMKS-GFRGNDK-TMA----SVLTACG 230 (523)
Q Consensus 172 a~~~~~~~~~-~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~ 230 (523)
|+..++.... |+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+..+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9999988776 221 012222222221 1223 6788888888754 1223221 111 1133445
Q ss_pred ccccHHHHHHHHHHHHHcCCC-CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCChH
Q 038200 231 RSARFNEGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-------LVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~ 302 (523)
..|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 668888999999888877532 322 22225668888888999988888875422 234555666778888888
Q ss_pred HHHHHHHHHHhCCCC------CCCcCCCH---HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 303 EGIKLFTALVNGTVA------GGSISPDE---ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~------~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
+|..+++.+...... .....|+. ..+..+...+...|+.++|++.++++.. ..+.+...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 888888888764200 00011231 2344555667777777788777777776 345556777777777777
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.|++++|++.++++.+ ..|+ ...+......+...|++++|+..++.+++..|+++.
T Consensus 406 ~g~~~~A~~~l~~al~----l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 406 RGWPRAAENELKKAEV----LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred cCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 7777777777777775 3444 445555555667777777777777777777777663
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=181.90 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=140.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCC---chHHHHHHHHHHcc
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFE---LPVMNSLINMYGCF 135 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 135 (523)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677777777777777653 33444666677777777777777777777665432111 13455555666666
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 038200 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF 215 (523)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 215 (523)
|+++.|..+|+++.+.+. .+..+++.++..+.+.|++++|.+.++.+.+.+.
T Consensus 121 g~~~~A~~~~~~~l~~~~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD----------------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred CCHHHHHHHHHHHHcCCc----------------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 666666666655542100 2233344444444444444444444444444321
Q ss_pred CCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC--hHH
Q 038200 216 RGND----KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN--LVC 287 (523)
Q Consensus 216 ~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~--~~~ 287 (523)
.++. ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+++.+ |+ ..+
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 1111 122333344444444444444444444432 11233444444444445555555555444432 11 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 367 (523)
++.++.+|...|++++|...++++... .|+...+..++..+.+.|++++|..+++++.+. .|+...+..+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l 321 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE-------YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRL 321 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHH
Confidence 444445555555555555555555442 244334444444555555555555555554432 3444444444
Q ss_pred HHHHHc---CCChHHHHHHHHhCC
Q 038200 368 ANLYAG---AELTEEAEEILRKMP 388 (523)
Q Consensus 368 ~~~~~~---~g~~~~A~~~~~~~~ 388 (523)
+..+.. .|+.+++..+++++.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHH
Confidence 444332 234455555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-19 Score=183.69 Aligned_cols=394 Identities=9% Similarity=-0.020 Sum_probs=302.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
-.-.+......|+.++|++++....... +.+...+..+..++...|++++|..+++..++..+. +...+..+..++..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3455677888999999999999998632 445556899999999999999999999999987533 67778889999999
Q ss_pred cCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHH
Q 038200 135 FGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFR 208 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~ 208 (523)
.|++++|...+++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..+.|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999986 23555 88888899999999999999999876 4 45666778888889999999999887
Q ss_pred HHHHCCCCCCH------HHHHHHHHHHh-----ccccH---HHHHHHHHHHHHc-CCCCchH-HH----HHHhhhhhhcC
Q 038200 209 EMMKSGFRGND------KTMASVLTACG-----RSARF---NEGRSVHGYTVRT-SLKPNII-LD----TALIDLYSKCQ 268 (523)
Q Consensus 209 ~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~ 268 (523)
.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6654 2321 01122222222 22334 7788888888864 2223221 11 11133446779
Q ss_pred ChHHHHHHHHhcCCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC--CCHHHHHHHHHHHhhcCcHH
Q 038200 269 KVEVAQRVFDSMADRN---L-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS--PDEITFIGVICACVRAELLT 342 (523)
Q Consensus 269 ~~~~a~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~ 342 (523)
++++|+..|+++.+.+ + .....+..+|...|++++|+..|+++..... .. +.......+..++.+.|+++
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p----~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE----TIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC----CCCCCChHHHHHHHHHHHhcccHH
Confidence 9999999999997632 2 1223357789999999999999999886430 11 11345666777889999999
Q ss_pred HHHHHHHHhhHhcC----------CCCC---hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYK----------IKPN---FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 343 ~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
+|..+++.+.+... -.|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+.
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 99999999987310 0122 234567788899999999999999999864 3445778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..|+.++|+..++++++.+|+++..+..++..+.+.|++++|..+++++.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999775
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-19 Score=178.37 Aligned_cols=355 Identities=8% Similarity=-0.087 Sum_probs=178.4
Q ss_pred ccCCchhHHHHhccCCC------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHH
Q 038200 33 DFGSPDYTVLVFKCINN------PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106 (523)
Q Consensus 33 ~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 106 (523)
+..+++.---.|...++ .+..-...++..+.+.|+++.|..+++...... +-+...+..++.++...|++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556555555555442 122334455666777777777777777777653 22333445555555667777777
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 038200 107 GMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVRSGDMSAAHELFDIMPE-- 181 (523)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-- 181 (523)
...++.+.+..+. +...+..+...+...|++++|...+++... .+...+..+...+...|++++|...++.+..
T Consensus 96 ~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 7777777776533 556666666777777777777777666542 2344555555555555555555555554422
Q ss_pred CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHH
Q 038200 182 RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 182 ~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
|+ ...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 21 2222222 2244555555555555555444222233333333444555555555555555555443 2233444444
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
..++...|++++|. .+|...|++..... +.+...+..+...+...|+
T Consensus 253 g~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 253 GLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN------SDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCC
Confidence 44444445444310 01455555554421 1123344444455555555
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHhcCCHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 419 (523)
+++|...++++.+. -+.+...+..+..+|.+.|++++|.+.++++... .|+.. .+..+..++...|+.++|..
T Consensus 300 ~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~----~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 300 NEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE----KGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555442 1222334444455555555555555555554431 22221 12222334445555555555
Q ss_pred HHHHHhhcCCC
Q 038200 420 LAKSFVDMDPQ 430 (523)
Q Consensus 420 ~~~~~~~~~p~ 430 (523)
.++++.+..|+
T Consensus 374 ~l~~al~~~P~ 384 (656)
T PRK15174 374 VFEHYIQARAS 384 (656)
T ss_pred HHHHHHHhChh
Confidence 55555555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=174.91 Aligned_cols=318 Identities=10% Similarity=-0.031 Sum_probs=252.8
Q ss_pred HHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 25 INLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
...+..+.+.|++++|..+++.+. +.+...+..++.+....|+++.|+..|+++.+.. +.+...+..+...+.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 344556678899999999998764 3345566677788888999999999999999864 445567888888899999
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
++++|...++.+.+..+. +...+..+..++...|++++|...++.+. .| +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999999987533 67788899999999999999999998774 33 33344333 457889999999999998
Q ss_pred CCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHH----HHHHHHHHHHcCC
Q 038200 179 MPER----NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNE----GRSVHGYTVRTSL 250 (523)
Q Consensus 179 ~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~ 250 (523)
+.+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 7652 33445556778899999999999999999864 4466778889999999999986 789999998864
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
+.+..++..+...+...|++++|+..+++..+ | +...+..+..++...|++++|...|+++.... |+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-------P~~~~ 353 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-------GVTSK 353 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------ccchH
Confidence 33677888889999999999999998888754 3 45667778888888999999999998888743 55433
Q ss_pred -HHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 328 -FIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 328 -~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+..+..++...|+.++|...|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344556778889999999999888764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-18 Score=173.75 Aligned_cols=478 Identities=10% Similarity=-0.021 Sum_probs=341.0
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHH--------hhccCCchhHHHHhccCCCC--CcccHHH-HHHHHHhCCCchHH
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKH--------SADFGSPDYTVLVFKCINNP--GTFCVNA-VIKAYSNSCVPDQG 71 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~-ll~~~~~~~~~~~a 71 (523)
.+-.+.+.+++.. |.+..++..+... |.+.+....+++ .+...| +...... +.+.|.+.|++++|
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 3456777777775 4577787777776 777766666666 333333 3443344 48899999999999
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHHc-cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC
Q 038200 72 VVFYLQMIKNGFMPNSYTFVSLFGSCAK-TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150 (523)
Q Consensus 72 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (523)
+++++++.+.+ +.+..-...+..++.+ .++ +.+..+++. .++-+...+..++..|.+.|+.++|.++++++..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999986 3444446667677776 366 777777543 3345788899999999999999999999999862
Q ss_pred -----CCcchHHHH------------------------------HHHH--------------------------------
Q 038200 151 -----RDLISWNSI------------------------------VSGH-------------------------------- 163 (523)
Q Consensus 151 -----~~~~~~~~l------------------------------l~~~-------------------------------- 163 (523)
|+..+|--. +..+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT 355 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence 111111111 1122
Q ss_pred -------------------------------HhcCCHHHHHHHHhcCCC--C----ChhHHHHHHHHHHhcCC---chHH
Q 038200 164 -------------------------------VRSGDMSAAHELFDIMPE--R----NVVSWNIMISGYSKSGN---PGCS 203 (523)
Q Consensus 164 -------------------------------~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~~~---~~~a 203 (523)
.+.|+.++|.++|+.... + +...-+-++..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 244555555555555443 1 11223345555555544 2222
Q ss_pred HHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHH
Q 038200 204 LKL----------------------FREMMKS-GF-RG--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 204 ~~~----------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
..+ +...... +. ++ +...|..+..++.. ++.++|...+.+..... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHH
Confidence 222 1111111 11 23 56677777777776 88889999888887754 554444
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICA 334 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~ 334 (523)
..+...+...|++++|...|+++.. ++...+..+..++...|+.++|...+++..... |+. ..+..+...
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-------P~~~~l~~~La~~ 585 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-------LGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CccHHHHHHHHHH
Confidence 4455566789999999999998754 445567777888999999999999999998854 443 344444455
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 413 (523)
+...|++++|...+++..+ ..|+...|..+..++.+.|++++|++.+++..+. .| +...+..+..++...|+
T Consensus 586 l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL----EPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 5667999999999999987 3567889999999999999999999999999964 45 46677777778999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKE 493 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (523)
.++|...++++++..|+++.++..++.+|...|++++|...+++..+.. |+. ..+......+.....+...+.+
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~----P~~--a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI----DNQ--ALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCC--chhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997643 322 3344466666666667888999
Q ss_pred HHHHHHhcccCCccccccccc
Q 038200 494 EVNKMMECRQSRSLATVSKQL 514 (523)
Q Consensus 494 ~l~~~~~~~~~~~~~~~~~~~ 514 (523)
.+++....+|+.. +-...|-
T Consensus 733 ~~~r~~~~~~~~~-a~~~~g~ 752 (987)
T PRK09782 733 EVGRRWTFSFDSS-IGLRSGA 752 (987)
T ss_pred HHHHHhhcCccch-hccccch
Confidence 9999999999888 4443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-17 Score=165.24 Aligned_cols=434 Identities=9% Similarity=-0.001 Sum_probs=315.3
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC--CCcc-cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc-HHHH-
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGTF-CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT-FVSL- 93 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l- 93 (523)
..+.+.-.-+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~lla 107 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLAS 107 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHH
Confidence 3444444444466789999999999998764 4321 23388888999999999999999988 343332 3333
Q ss_pred -HHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH--hcCCHH
Q 038200 94 -FGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV--RSGDMS 170 (523)
Q Consensus 94 -l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~ 170 (523)
...+...|++++|.++++.+.+..+. +...+..++..+...++.++|++.++++.+.+......+..++. ..++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 45677889999999999999998755 67888888999999999999999999998654433333444444 456666
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----hcccc--
Q 038200 171 AAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM------ASVLTAC-----GRSAR-- 234 (523)
Q Consensus 171 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------~~ll~~~-----~~~~~-- 234 (523)
+|++.++++.+ | +...+..+..+..+.|-...|+++..+-.+. +.+...-. ...++.- ....+
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 69999999875 4 5677788889999999999998777654322 12221111 1111110 01122
Q ss_pred -HHHHHHHHHHHHHc-CCCCc-hHH-HH---HHhhhhhhcCChHHHHHHHHhcCCC----ChHHHHHHHHHHHhcCChHH
Q 038200 235 -FNEGRSVHGYTVRT-SLKPN-IIL-DT---ALIDLYSKCQKVEVAQRVFDSMADR----NLVCWNAMILGHCIHGKPEE 303 (523)
Q Consensus 235 -~~~a~~~~~~~~~~-~~~~~-~~~-~~---~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~ 303 (523)
.+.|..-++.+... +..|. ... .. -.+-++...++..++++.|+.+..+ ...+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 11132 122 22 2345677889999999999999853 33567788999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----------CCCC---hHHHHHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK----------IKPN---FAHYWCMANL 370 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~ 370 (523)
|..+|+.+...........++......|..++..++++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 99999999764311001123444467889999999999999999999987311 0122 2344557888
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
+...|++.+|++.++++... -+-|......+...+...|....|+..++.+..++|++..+....+.++...|+|++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST---APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHH
Confidence 89999999999999999864 344778888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 038200 451 VARVRELMKKR 461 (523)
Q Consensus 451 A~~~~~~m~~~ 461 (523)
|..+.+.+...
T Consensus 503 A~~~~~~l~~~ 513 (822)
T PRK14574 503 MELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhh
Confidence 99999888665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-18 Score=174.58 Aligned_cols=427 Identities=11% Similarity=0.016 Sum_probs=298.0
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
+......+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..++..++..+. +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 445667788899999999999998874 678888889999999999999999999999887543 67788889999999
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
.|++++|+..|...... +......++..+........+...++.-+. +...+..+.. |...........-+....
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 99999999887665421 111112222222222222344444443322 2223333322 222222222222222111
Q ss_pred HCCCCCCH-HHHHHHHH---HHhccccHHHHHHHHHHHHHcC-CCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC--C
Q 038200 212 KSGFRGND-KTMASVLT---ACGRSARFNEGRSVHGYTVRTS-LKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD--R 283 (523)
Q Consensus 212 ~~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 283 (523)
+ ..+.. ..+..+.. -....+++++|...|+...+.+ ..| ....+..+...+...|++++|+..|++..+ |
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 1 11111 11111111 1134578999999999999865 223 456788888899999999999999999865 3
Q ss_pred -ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 -NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+ ..+.+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~ 434 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIF 434 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHH
Confidence 35688889999999999999999999998853 33467888899999999999999999999988 3444677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH-----
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF----- 437 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~----- 437 (523)
.+..+..++.+.|++++|+..+++.... .+.+...++.+...+...|++++|...+++++++.|.+...+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 8888999999999999999999998853 33457788888889999999999999999999998864333221
Q ss_pred --HHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCC
Q 038200 438 --LLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSR 505 (523)
Q Consensus 438 --l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 505 (523)
.+..+...|++++|..++++..+.. |++.. ....+.......++.++++..+++.++..+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~--a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID----PECDI--AVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 2223445799999999999886643 32211 11111222223368899999999998887653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-17 Score=159.18 Aligned_cols=431 Identities=13% Similarity=0.075 Sum_probs=324.5
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--c
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINNPG------TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY--T 89 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ 89 (523)
|.||.+.+.|.+.|--.|+++.++.+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .||.+ .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 4789999999999999999999999887765322 335778899999999999999999888775 35543 4
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC----ChHHHHHHHhhcCCC---CcchHHHHHHH
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG----AMDCARNMFVQMSPR---DLISWNSIVSG 162 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~ 162 (523)
+--+...+...|+++.+...|+.+.+..+. +..+.-.|...|...+ ..+.|..++.+...+ |...|-.+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 556778888999999999999999887433 6777777888887765 567788888777654 45555555554
Q ss_pred HHhcCCHHHHHHHHhcCC--------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC---CCCCCH------HHHHHH
Q 038200 163 HVRSGDMSAAHELFDIMP--------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS---GFRGND------KTMASV 225 (523)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l 225 (523)
+-. ++.-.++..|.... ..-+...|.+...+...|++++|...|...... ...+|. .+--.+
T Consensus 424 ~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 433 33333344443332 356778899999999999999999999888665 122232 233445
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 302 (523)
..++-..++.+.|.+.|..+.+.. +.-+..|--++.+....++..+|...+..... .++..+..+...+.....+.
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 666777889999999999998864 22234444444344445778889888888754 57778888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh------------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVR------------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
.|.+-|+...+.-. ..+|..+...|...|.+ .+..+.|+++|.++.+ ..+-|...-+.+.-+
T Consensus 582 ~a~k~f~~i~~~~~----~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiV 655 (1018)
T KOG2002|consen 582 PAKKKFETILKKTS----TKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIV 655 (1018)
T ss_pred ccccHHHHHHhhhc----cCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhh
Confidence 99888877766541 34677777777776543 2456788888888887 455677888889999
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-C-CCChhhHHHHHHHHHhcCCh
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM-D-PQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-p~~~~~~~~l~~~~~~~g~~ 448 (523)
++..|++.+|..+|.++.+. ......+|..+..+|...|++..|.++|+...+. . .+++.+...|++++.+.|++
T Consensus 656 LA~kg~~~~A~dIFsqVrEa---~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREA---TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhccCchHHHHHHHHHHHH---HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999864 2334568889999999999999999999998873 3 35888999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038200 449 EDVARVRELMKKRR 462 (523)
Q Consensus 449 ~~A~~~~~~m~~~~ 462 (523)
.+|.+.........
T Consensus 733 ~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 733 QEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988876653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-15 Score=152.12 Aligned_cols=420 Identities=12% Similarity=0.033 Sum_probs=310.0
Q ss_pred hHhHHHHHHHHhCCCCCCh-hHHHHHHHHhhccCCchhHHHHhccCCCCCccc-HHHH--HHHHHhCCCchHHHHHHHHH
Q 038200 3 QLLQIQAHLITSGLFFNNS-FWTINLLKHSADFGSPDYTVLVFKCINNPGTFC-VNAV--IKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--l~~~~~~~~~~~a~~~~~~m 78 (523)
.|...+....+.. |.++ .++ .++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|+++
T Consensus 52 ~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka 128 (822)
T PRK14574 52 PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS 128 (822)
T ss_pred HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555543 3343 444 88889999999999999999987664444 3344 45778889999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC--CC-Ccch
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLIS 155 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~ 155 (523)
.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++. .| +...
T Consensus 129 L~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 129 LKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 9874 444567777788889999999999999999876 4455555555555555667766999999997 33 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHH--------HHHHHHH---H--hcCC---chHHHHHHHHHHHC-CCCC
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPER-NVVSW--------NIMISGY---S--KSGN---PGCSLKLFREMMKS-GFRG 217 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~--------~~li~~~---~--~~~~---~~~a~~~~~~m~~~-~~~p 217 (523)
+..+..++.+.|-...|.++..+-+.- +...+ ..+++.- . ..++ .+.|+.-++.+... +..|
T Consensus 206 ~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p 285 (822)
T PRK14574 206 LKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDP 285 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCC
Confidence 788889999999999999999887641 11111 1111110 0 1122 34566666666552 2223
Q ss_pred CH-H----HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---------
Q 038200 218 ND-K----TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR--------- 283 (523)
Q Consensus 218 ~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------- 283 (523)
.. . ...-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|+.+|..+...
T Consensus 286 ~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~ 365 (822)
T PRK14574 286 EAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSD 365 (822)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCc
Confidence 22 2 222345567889999999999999998886656678889999999999999999999998442
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------CCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTV--------AGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+......|.-+|...+++++|..+++++.+... ......||-. .+..++..+...|++.+|++.++++..
T Consensus 366 ~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~- 444 (822)
T PRK14574 366 DLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS- 444 (822)
T ss_pred chHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 233357788999999999999999999988431 0011223322 344556778899999999999999987
Q ss_pred cCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.-+-|......+.+.+...|.+.+|.+.++.+.. ..|+ ..+....+.++...|++++|..+.+.+.+..|+++.
T Consensus 445 -~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~----l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 445 -TAPANQNLRIALASIYLARDLPRKAEQELKAVES----LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 5666899999999999999999999999988774 3554 556666777888999999999999999999998874
Q ss_pred h
Q 038200 434 R 434 (523)
Q Consensus 434 ~ 434 (523)
+
T Consensus 520 ~ 520 (822)
T PRK14574 520 S 520 (822)
T ss_pred H
Confidence 3
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-16 Score=140.90 Aligned_cols=412 Identities=11% Similarity=0.076 Sum_probs=259.8
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC----CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc--c---
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFC-VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS--Y--- 88 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~--- 88 (523)
.+..+...|.+-|.......+|+..++-+.+ ||.-. --.+...+.+.+++.+|++.|+-.+.. .|+. .
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 4455566666677777777888877776543 22111 112334455566666666666555443 2221 1
Q ss_pred -cHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----------------C
Q 038200 89 -TFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----------------R 151 (523)
Q Consensus 89 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~ 151 (523)
..+.+.-.+.+.|+++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 1222223345566666666666666554 34444444444445555666666666666531 1
Q ss_pred CcchHHHHHH-----H----------------------------------------------------------HHhcCC
Q 038200 152 DLISWNSIVS-----G----------------------------------------------------------HVRSGD 168 (523)
Q Consensus 152 ~~~~~~~ll~-----~----------------------------------------------------------~~~~~~ 168 (523)
+....+.-|. - |.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111111111 0 345555
Q ss_pred HHHHHHHHhcCCCCChhHHHH----H-HHHHHh-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 169 MSAAHELFDIMPERNVVSWNI----M-ISGYSK-SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 169 ~~~a~~~~~~~~~~~~~~~~~----l-i~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
++.|++++.-..+.|..+-.+ | +--|.+ ..++..|..+-+..+... .-+......-.+.....|++++|.+.|
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 555555555544433222111 1 111111 223444444443333221 122222222233344568899999999
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
.+.+...-......|| +.-.+...|++++|++.|-++.. .+......+...|-...+...|++++.+....
T Consensus 514 keal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl----- 587 (840)
T KOG2003|consen 514 KEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----- 587 (840)
T ss_pred HHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----
Confidence 9888765433334444 34456778999999999887643 56777778888898899999999999877663
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
++.|+..+..|...|-+.|+-.+|.+.+-.--. -++.+..+..-|..-|....-+++|+.+|++..- +.|+..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal----iqp~~~ 660 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL----IQPNQS 660 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh----cCccHH
Confidence 455678888899999999999999887766554 4667888888899999999999999999998763 789999
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 400 MWVSLLSLC-RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 400 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
-|..++..| ++.|++.+|...++.....-|.+..++..|++.+...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999888765 6789999999999999999999999999999998888753
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=151.68 Aligned_cols=446 Identities=13% Similarity=0.055 Sum_probs=261.9
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHH
Q 038200 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF--MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127 (523)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (523)
.|++..+.|...|.-.|++..+.++...+...-. ..-..+|--+.+++-..|++++|...|....+....-.+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 3455555556666666666666666666554320 01122355556666666666666666666555432211333345
Q ss_pred HHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcC----CHHHHHHHHhcCCC---CChhHHHHHHHHHHhc
Q 038200 128 LINMYGCFGAMDCARNMFVQMSP---RDLISWNSIVSGHVRSG----DMSAAHELFDIMPE---RNVVSWNIMISGYSKS 197 (523)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 197 (523)
|..+|++.|+++.+...|+.+.+ .+..+...+...|...+ ..+.|..++.+..+ .|...|-.+...+-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 55666666666666666666542 23344444444444443 34455555555444 2444555555444443
Q ss_pred CCchHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc---CCCCc------hHHHHHHhhhh
Q 038200 198 GNPGCSLKLFREM----MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT---SLKPN------IILDTALIDLY 264 (523)
Q Consensus 198 ~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~ 264 (523)
. +..++.+|... ...+..+.....+.+...+...|+++.|...|...... ...++ +.+-..+...+
T Consensus 428 d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 D-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred C-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 3 33335544433 33444456666666666666777777777666665544 11111 11222344555
Q ss_pred hhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcH
Q 038200 265 SKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (523)
...++.+.|.+.|..+.+ |+- ..|-.++......+...+|...++...... ..++..+..+...+.....+
T Consensus 507 E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d------~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID------SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc------cCCcHHHHHHHHHHHhhhhh
Confidence 555666677777766655 222 233333333334466777777777776643 23333444444456666666
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHH------------cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYA------------GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
..|.+-|+.+.+.....+|+...-.|.+.|. ..+..++|+++|.+++.. .+.+...-+.+...++
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~---dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN---DPKNMYAANGIGIVLA 657 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc---Ccchhhhccchhhhhh
Confidence 6677766666554333456666666666553 234567899999988853 3446666677777788
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC-ceeEEEeCCeEEEEecCCCCc
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP-GCRLVDLKEVVEKLKVGHFWR 488 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 488 (523)
..|++..|..+|.++.+...+.+.+|..++.+|..+|+|..|+++|+...++-.+.+. +. +......+... +..
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v----l~~Lara~y~~-~~~ 732 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV----LHYLARAWYEA-GKL 732 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH----HHHHHHHHHHh-hhH
Confidence 8999999999999999866667789999999999999999999999988776543333 21 12222222222 368
Q ss_pred hHHHHHHHHHHhcccCCccccc
Q 038200 489 GGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 489 ~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.++.+.+...+...|+++.-.+
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHh
Confidence 8899999999999999876443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-14 Score=125.95 Aligned_cols=394 Identities=14% Similarity=0.149 Sum_probs=191.9
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhh--ccCCchhH-HHHhccCC-----------------------CCCcccH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSA--DFGSPDYT-VLVFKCIN-----------------------NPGTFCV 55 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~--~~g~~~~A-~~~~~~~~-----------------------~~~~~~~ 55 (523)
+.+--+++.|...|++ ..+.+...|+..-+ ...++.-| ++.|-.|. +.+..+|
T Consensus 132 KDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~ 210 (625)
T KOG4422|consen 132 KDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETV 210 (625)
T ss_pred chhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhH
Confidence 3445678889999998 88888888876432 33333222 22333332 2334455
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc
Q 038200 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135 (523)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (523)
..||.++|+.-..+.|.+++++......+.+..+||.+|.+-+-. ...+++.+|....+.||..|+|+++.+..+.
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 566666666666666666666655555555666666665554322 1255555565555566666666666655555
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC----CCChhHHHHHHHHHHhcCCchH-HHHHHHHH
Q 038200 136 GAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP----ERNVVSWNIMISGYSKSGNPGC-SLKLFREM 210 (523)
Q Consensus 136 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m 210 (523)
|+++.|.+ .|.+++.+|+ +|...+|..+|..+.+.++..+ |..++.+.
T Consensus 287 g~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 287 GKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred cchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 55544432 1223333332 2445555555555555544433 22222332
Q ss_pred HHC----CCC---C-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcC----CCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 211 MKS----GFR---G-NDKTMASVLTACGRSARFNEGRSVHGYTVRTS----LKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 211 ~~~----~~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
+.. .++ | |...|...+..|.+..+.+.|.++...+.... +.|+..
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~----------------------- 396 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQH----------------------- 396 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHH-----------------------
Confidence 221 111 1 22334444555555555555555444333210 111110
Q ss_pred hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC
Q 038200 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358 (523)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (523)
...-|..+....|+....+.-...|+.|+-.- +-|+..+...++++..-.+.++-.-++|..++.- |..
T Consensus 397 -----~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-----y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght 465 (625)
T KOG4422|consen 397 -----RNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-----YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHT 465 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-----ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhh
Confidence 01123334444444444555555555554443 4455555555555555455554444444444442 333
Q ss_pred CChHHHHHHHHHHHcCC--------------------ChHHH-HHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 359 PNFAHYWCMANLYAGAE--------------------LTEEA-EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g--------------------~~~~A-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.+.....-+...+++.. ++.++ ...-.++.. ........+..+..+.+.|..++|
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~----~~~~~t~l~~ia~Ll~R~G~~qkA 541 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA----QDWPATSLNCIAILLLRAGRTQKA 541 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh----ccCChhHHHHHHHHHHHcchHHHH
Confidence 33333333333333222 11111 111122221 222334556666667788888888
Q ss_pred HHHHHHHhhcC---CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 418 ERLAKSFVDMD---PQDF--SRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 418 ~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
-+++..+.+.. |..| .+...+.+.-.+......|..+++-|...+...
T Consensus 542 ~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 542 WEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 88888775422 3333 123345555566677778888888876665533
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.8e-14 Score=126.88 Aligned_cols=379 Identities=15% Similarity=0.090 Sum_probs=260.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN-SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYG 133 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (523)
+-....-|-++|.+++|++.|.+.+.. .|| +..|.....+|...|+|+++.+--...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 334455678899999999999999985 688 777888888889999999998888877776433 3556666677777
Q ss_pred ccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC------------CHHHHHHHHhcCCC---CChhH------------
Q 038200 134 CFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG------------DMSAAHELFDIMPE---RNVVS------------ 186 (523)
Q Consensus 134 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~------------~~~~a~~~~~~~~~---~~~~~------------ 186 (523)
..|++++|+.=. |-.+++.++.... -...+.+-+..-.. |+...
T Consensus 195 ~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 788887775321 1112222211111 11222222221111 11111
Q ss_pred -----------HHHHHHHHHh--cC---CchHHHHHHHHHHHCC-CCC-----CH------HHHHHHHHHHhccccHHHH
Q 038200 187 -----------WNIMISGYSK--SG---NPGCSLKLFREMMKSG-FRG-----ND------KTMASVLTACGRSARFNEG 238 (523)
Q Consensus 187 -----------~~~li~~~~~--~~---~~~~a~~~~~~m~~~~-~~p-----~~------~~~~~ll~~~~~~~~~~~a 238 (523)
...+..++.. .+ .+..|...+.+-.... ..+ |. .+......-+.-.|+.-.|
T Consensus 266 ~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 1111111111 11 2333333332221110 011 11 1111122223446888889
Q ss_pred HHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 239 RSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
.+-|+..++.... +...|--+..+|....+.++....|++... .|+.+|..-.+.+.-.+++++|..=|++.+..
T Consensus 346 ~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L- 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL- 423 (606)
T ss_pred hhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 9999999887544 334477778889999999999999998865 46678888888888899999999999999884
Q ss_pred CCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC
Q 038200 316 VAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM 394 (523)
Q Consensus 316 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 394 (523)
.|+ ...|..+..+..+.+++++++..|+..++ .++..+..|+.....+...++++.|.+.|+..++.
T Consensus 424 ------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---- 491 (606)
T KOG0547|consen 424 ------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---- 491 (606)
T ss_pred ------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh----
Confidence 464 56777777777889999999999999999 67778899999999999999999999999988753
Q ss_pred Cch---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 395 SFE---------SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 395 ~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.|+ +.+.-.++..-. .+++..|..+++++++++|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333 222222222222 38999999999999999999889999999999999999999999997643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-17 Score=148.52 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=115.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
.+...+.+.|++++|+++++.......+|+. ..|..+...+...++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4567788899999999999765554323444 44455666677789999999999999887533 56677777777 688
Q ss_pred CChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 268 QKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
+++++|.+++...-+ ++...+..++..+...++++++..+++.+.... ..+++...|..+...+.+.|+.++|+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP----AAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999998887643 566778888899999999999999999987643 13456778888889999999999999
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
+.+++..+. .+.|......++..+...|+.+++.++++..... .+.++..+..+..++...|+.++|..+++++.
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhccccccccccccccccc
Confidence 999999984 3445888889999999999999988888887643 24455677888899999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|+|+.....++.++...|+.++|.+++++..+
T Consensus 242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999887643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-13 Score=123.15 Aligned_cols=349 Identities=14% Similarity=0.075 Sum_probs=239.5
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSL 93 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 93 (523)
|-++.++..+|..+++....+.|.+++++... -+..+||.+|.+-.- ..-.+++.+|.+..+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 47899999999999999999999999998753 466678888765432 2337899999999999999999999
Q ss_pred HHHHHccCCchH----HHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH-HHHHHhhcC------------CCCcchH
Q 038200 94 FGSCAKTGCVER----GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC-ARNMFVQMS------------PRDLISW 156 (523)
Q Consensus 94 l~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------------~~~~~~~ 156 (523)
+.+.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++. +.|...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998875 46788999999999999999999999999887744 444444332 2356678
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCC--------CC---hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPE--------RN---VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
...+..|.+..+.+.|.++-.-+.. ++ ..-|..+..+.++....+.-+..|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 8888889999999999888766653 22 234667777888889999999999999888788999999999
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHh--cCChHH
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI--HGKPEE 303 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~ 303 (523)
+++..-.|+++-..+++..+...|.........-+...+++.. ..|+...-..+-...++ ..-.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888764433332222222222211 01211111111111111 011111
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH---HHHHHHHcCCChHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW---CMANLYAGAELTEEA 380 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A 380 (523)
....-.+|.+. .......+.++-.+.+.|..++|.++|..+.+...--|.....+ -+++.-.+.+....|
T Consensus 508 ~e~~~~R~r~~-------~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 508 YESQPIRQRAQ-------DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHhhHHHHHhc-------cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 12223334432 34444556666666777777777777777654423333333333 444555566666777
Q ss_pred HHHHHhCCC
Q 038200 381 EEILRKMPE 389 (523)
Q Consensus 381 ~~~~~~~~~ 389 (523)
..+++-|..
T Consensus 581 ~~~lQ~a~~ 589 (625)
T KOG4422|consen 581 IEVLQLASA 589 (625)
T ss_pred HHHHHHHHH
Confidence 777766653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=123.54 Aligned_cols=399 Identities=12% Similarity=0.084 Sum_probs=268.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccH-HHHHHHHHccCCchHHHHHHHHHHHhCCCCCch----HHHHHHHHH
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTF-VSLFGSCAKTGCVERGGMCHGLALKNGVDFELP----VMNSLINMY 132 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~ 132 (523)
|.+-|..+..+.+|+..|+-..+...-|+.-.. ..+.+.+.+.+.+.+|+.+++..+..-+..+.. +.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 445566677888999999998887777776543 234566778889999999999888764444433 455555568
Q ss_pred HccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC----------------CChhHHHHHH---
Q 038200 133 GCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE----------------RNVVSWNIMI--- 191 (523)
Q Consensus 133 ~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~li--- 191 (523)
.+.|+++.|+..|+... .|+..+-..++-++...|+.++..+.|.+|.. |+....+.-+
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 89999999999999987 35555444455555667899999999988863 2222222211
Q ss_pred --HHHHhcC--CchHHHHHHHHHHHCCCCCCHH-----H--------HH--------HHHHHHhccccHHHHHHHHHHHH
Q 038200 192 --SGYSKSG--NPGCSLKLFREMMKSGFRGNDK-----T--------MA--------SVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 192 --~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-----~--------~~--------~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
.-.-+.+ +.++++-.-.+++.--+.|+.. . +. .-...+.+.|+++.|.+++.-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 1112211111222111222211 0 00 01122456677777777766555
Q ss_pred HcCCCC------------------------------------chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHH
Q 038200 247 RTSLKP------------------------------------NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNA 290 (523)
Q Consensus 247 ~~~~~~------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 290 (523)
+..-.. +......-.+.....|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 432211 11111111122224578899999999888776654444
Q ss_pred H---HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH
Q 038200 291 M---ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM 367 (523)
Q Consensus 291 l---i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 367 (523)
| ...+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.....|
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i------l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI------LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 3 34577889999999999888763 344566777888889999999999999999887 677789999999
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH-HHHHHHhcC
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF-LLNVYAVAG 446 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g 446 (523)
...|-+.|+-..|.+..-+--.- ++-+..+..-|...|....-++++..+|+++.-+.|+.. -|.. ++.++.+.|
T Consensus 599 ~dlydqegdksqafq~~ydsyry---fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY---FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSG 674 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc---cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcc
Confidence 99999999999999987766532 455677777777778888889999999999998999544 4554 556667899
Q ss_pred ChhHHHHHHHHHHhCCCccCCce
Q 038200 447 QWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
++.+|.++|+...++ ++.+.+|
T Consensus 675 nyqka~d~yk~~hrk-fpedldc 696 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDC 696 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHH
Confidence 999999999998765 5666665
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-12 Score=124.88 Aligned_cols=505 Identities=10% Similarity=0.011 Sum_probs=283.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhcc---CCCCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKC---INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|..|...+++.. |.++..|-.|..+|-..|+.+++...+-. +.+.|..-|..+.....+.|+++.|.-.|.+.
T Consensus 156 eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34556666666664 45667777777777777777777665532 23455566777777777777777777777777
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHH----HHHHHHHccCChHHHHHHHhhcCC----
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN----SLINMYGCFGAMDCARNMFVQMSP---- 150 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~---- 150 (523)
++.. +++...+---...|-+.|+...|...+.++....++.|..-+. ..+..+...++-+.|.+.++....
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 7653 4444444444555666677777777777776654432222222 233344455555666666665542
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-------------------------------CChhHHHHHHHHHHhcC
Q 038200 151 -RDLISWNSIVSGHVRSGDMSAAHELFDIMPE-------------------------------RNVVSWNIMISGYSKSG 198 (523)
Q Consensus 151 -~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~~~~li~~~~~~~ 198 (523)
-+...++.++..|.+...++.|......+.. .+..+. -++-++....
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhccc
Confidence 1344566666666666666666555443321 011110 1112233333
Q ss_pred CchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRG--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 276 (523)
..+....+...+.+..+.| +...|.-+..++...|++..|..+|..+.......+..+|-.+..+|...|..+.|...
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 3333333444444444332 33456666677777777777777777777665445566777777777777777777777
Q ss_pred HHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 277 FDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGT---VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 277 ~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
|+.+.. | +....-+|...+.+.|+.++|.+.+..+...+ .......|+..........+.+.|+.++-..+-..
T Consensus 472 y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 472 YEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777654 2 33445555666777777777777777654322 11122344444444444455555554443322222
Q ss_pred hhHhc--------------------------------------------------------------CCCCC--hHHHHH
Q 038200 351 MIDFY--------------------------------------------------------------KIKPN--FAHYWC 366 (523)
Q Consensus 351 ~~~~~--------------------------------------------------------------~~~~~--~~~~~~ 366 (523)
|...+ ++..+ -..+.-
T Consensus 552 Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e 631 (895)
T KOG2076|consen 552 LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRE 631 (895)
T ss_pred HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHH
Confidence 21110 00000 123455
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhc-----CCCChhhHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFES---IMWVSLLSLCRFQGAVAMVERLAKSFVDM-----DPQDFSRYQFL 438 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~~l 438 (523)
++..+++.+++++|+.+...+.+...-..++. ..-...+.++...+++..|...++.++.. +|.-...|+..
T Consensus 632 ~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~ 711 (895)
T KOG2076|consen 632 LILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLD 711 (895)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 67788899999999999888775322122222 12233445667889999999999999875 55445566655
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 439 LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
.+...+.|+-.--.+.+.+........+|. ...+ .-|.+.. ......|+...-++.+.+|+++..-...|++
T Consensus 712 ~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~--l~~i--~gh~~~~-~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 712 FSYFSKYGQRVCYLRLIMRLLVKNKDDTPP--LALI--YGHNLFV-NASFKHALQEYMRAFRQNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccCCcc--eeee--echhHhh-ccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 555555555444444444433322222221 1111 1122222 2467889999999999999988765544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-13 Score=132.43 Aligned_cols=322 Identities=12% Similarity=0.127 Sum_probs=183.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhc---CCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 101 GCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQM---SPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
|++++|..++.++++..+. +...|-+|..+|-..|+.+++...+-.. .+.|...|-.+.....+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 5555555555555555432 4445555555555555555555443322 23344444444444455555555555555
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHH
Q 038200 178 IMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 178 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
+. ++.. +++...+---...|-+.|+...|...|.++.....+.+..-.
T Consensus 232 rA-------------------------------I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 232 RA-------------------------------IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HH-------------------------------HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 54 4432 223233333333444444444444444444443221121111
Q ss_pred H----HHhhhhhhcCChHHHHHHHHhcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------------
Q 038200 258 T----ALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT------------- 315 (523)
Q Consensus 258 ~----~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------- 315 (523)
- ..++.+...++-+.|.+.++.... -+...++.++..|.+...++.|......+....
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence 1 122333333333444444443322 122234444444444455555544444444311
Q ss_pred ---------CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--CCCChHHHHHHHHHHHcCCChHHHHHHH
Q 038200 316 ---------VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK--IKPNFAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 316 ---------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
..+.+..++... ..+.-++.+.+..+....+.....+. . ..-++..|.-+..+|.+.|++.+|+.++
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred ccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 000113334333 12223334444444444444444443 4 3335788999999999999999999999
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
..+.... ...+...|..+..+|...|.+++|.+.|++++...|++..+-..|...|.+.|+.++|.+.++.+.
T Consensus 438 ~~i~~~~--~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 438 SPITNRE--GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHhcCc--cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999532 233477899999999999999999999999999999999999999999999999999999999875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-12 Score=115.63 Aligned_cols=437 Identities=11% Similarity=0.107 Sum_probs=328.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
...|-....-=..++++..|.++|+..+.-+ ..+...|...+.+=.++..+..|..+++..+..-+. -...|-..+.+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHH
Confidence 3344444444456788899999999999765 556667888888888999999999999999886433 33455566666
Q ss_pred HHccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMS--PRDLISWNSIVSGHVRSGDMSAAHELFDIMP--ERNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
--..|++..|.++|++-. +|+...|.+.|+.=.+-..++.|..++++.. .|++.+|--....-.+.|+...|..+|
T Consensus 151 EE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 667899999999999876 7999999999999999999999999999965 599999998888888999999999999
Q ss_pred HHHHHC-CC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHHHHhhhhhhcCChHHHHHH-------
Q 038200 208 REMMKS-GF-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDTALIDLYSKCQKVEVAQRV------- 276 (523)
Q Consensus 208 ~~m~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~------- 276 (523)
....+. |- ..+...|.+...--.++..++.|.-+|+..++.- +.+ ...|..+...--+-|+.....+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 988764 10 1122344444444456778899999999988863 323 45555555544455664443332
Q ss_pred -HHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-------HHHHHHHHH---hhcCcHH
Q 038200 277 -FDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-------TFIGVICAC---VRAELLT 342 (523)
Q Consensus 277 -~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-------~~~~ll~~~---~~~~~~~ 342 (523)
|+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+.+
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan------vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN------VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 2233332 5567777888878889999999999999986 466321 222222222 3578999
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHH----HcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLY----AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
.+.++|+...+ -++....|+.-+--+| .++.++..|.+++...+ |..|...+|...+..-.+.++++...
T Consensus 384 rtr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----G~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 384 RTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----GKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred HHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----ccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 99999999998 5666666666554444 57889999999999988 36899999999999999999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKM 498 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 498 (523)
.++++.++.+|.+..+|...+..-...|+++.|..+|+-..+...-..|..-|-.+ ..|-...+..+.+-++.+++
T Consensus 458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY----IdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY----IDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh----hhhhhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987765555554322111 22333335667788888899
Q ss_pred HhcccCCcc
Q 038200 499 MECRQSRSL 507 (523)
Q Consensus 499 ~~~~~~~~~ 507 (523)
++.+++...
T Consensus 534 L~rt~h~kv 542 (677)
T KOG1915|consen 534 LDRTQHVKV 542 (677)
T ss_pred HHhcccchH
Confidence 988877653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-11 Score=116.16 Aligned_cols=435 Identities=12% Similarity=0.073 Sum_probs=297.7
Q ss_pred HHHHHhhccCCchhHHHHhcc---CCCCCcccHHHHHHHHHhCCCchHHHHHHHH----HHHCCCCCCcccHHHHHHHHH
Q 038200 26 NLLKHSADFGSPDYTVLVFKC---INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQ----MIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~ 98 (523)
-|.-+|++...++.|.++++. ..+.+...|.+-...=-.+|+.+...+++.+ +...|+..+...|..=...|-
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344466777888888888865 3577888887777777788998888888765 445688888888888888888
Q ss_pred ccCCchHHHHHHHHHHHhCCCC--CchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHH
Q 038200 99 KTGCVERGGMCHGLALKNGVDF--ELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAH 173 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~ 173 (523)
..|.+-.+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|.... +.+...|......--..|..+.-.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 8888888888888888877652 24577777888888888888888888776 335566666666656667777777
Q ss_pred HHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Q 038200 174 ELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL 250 (523)
Q Consensus 174 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 250 (523)
.+|++... | ....|-.....+-..|+...|..++.+..+.. +.+...+...+.....+..++.|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 77776654 2 33445555556666677777777777766653 335556666666667777777777777766653
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EI 326 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~ 326 (523)
.|+..+|..-+....-.++.++|++++++..+ |+. ..|-.+.+.+-+.++.+.|.+.|..-.+. .|+ ..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-------cP~~ip 720 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-------CPNSIP 720 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-------CCCCch
Confidence 35555665555555556677777777766654 333 35666666666667777766666554442 343 33
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---------------
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--------------- 391 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------- 391 (523)
.|..|...=.+.|.+-.|..++++..- .-+-+...|...|++-.+.|+.+.|..+..+.++..
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 444444455556666677777776665 344456666666777777777666665554443220
Q ss_pred ------------CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 392 ------------DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 392 ------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
....-|+.+...+...+....+++.|...|.+++..+|+.-.+|..+...+.+.|.-++-.+++.+..
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 01223334555666677788889999999999999999988899999999999999888889988886
Q ss_pred hCCCccCCceeEEEe
Q 038200 460 KRRMGRMPGCRLVDL 474 (523)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (523)
.. .|.-|..|..+
T Consensus 879 ~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 879 TA--EPTHGELWQAV 891 (913)
T ss_pred cc--CCCCCcHHHHH
Confidence 64 44455445443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-12 Score=121.70 Aligned_cols=354 Identities=11% Similarity=0.064 Sum_probs=207.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHH----HhCCCCCchHHHHHHHHHHccC
Q 038200 61 AYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL----KNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g 136 (523)
++++..-|+.|..+++..++. ++.+...|.+....=-+.|+.+....++++.+ ..|+..+..-|-.=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344445555555555555543 44455555544444445555555555444332 2455555555555555555555
Q ss_pred ChHHHHHHHhhcC-----C-CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 137 AMDCARNMFVQMS-----P-RDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 137 ~~~~A~~~~~~~~-----~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
..-.+..+..... + .-..+|+.-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5544444444332 1 1223555555556666666666666666654 23445655555555566667777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL 285 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~ 285 (523)
++.+.. ++-....|......+-..|+...|..++.++.+.... +..++-+-+.......+++.|..+|.+... +..
T Consensus 574 qkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 776665 2333444455555566667777777777777665422 556666666666777777777777766643 445
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
..|.--+....-.++.++|.+++++.++. -|+ ...|..+.+.+.+.++++.|...|..-.+ ..+-.+..|
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 55555555555566777777777777663 355 34556666667777777777776666554 334445566
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
-.|.+.--+.|.+-.|..++++..-+ -+.+...|...+..-.+.|+.+.|..+..++++--|
T Consensus 723 llLakleEk~~~~~rAR~ildrarlk---NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLK---NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhc---CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66666666677777777777766643 244566677777777777777777776666665433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-13 Score=128.29 Aligned_cols=277 Identities=10% Similarity=0.066 Sum_probs=187.8
Q ss_pred cCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccccHHHHHH
Q 038200 166 SGDMSAAHELFDIMPER--NVV-SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA--SVLTACGRSARFNEGRS 240 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~ 240 (523)
.|+++.|++.+....+. +.. .|.....+..+.|+++.|..++.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666655442 122 2323344446777777777777777663 44543322 33456677777788877
Q ss_pred HHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC---h--------HHHHHHHHHHHhcCChHHHHHHHH
Q 038200 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN---L--------VCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...++|+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777765 3356677777777777788888877777765421 1 133333444444455666667777
Q ss_pred HHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
.+.+. .+.++.....+..++...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.+++..+
T Consensus 254 ~lp~~------~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 254 NQSRK------TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred hCCHH------HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 66543 3456777888888889999999999999888763 3444322 33344456888999999988886
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
. .+-|......+...|...+++++|.+.|+++.+..|+ ...+..|+.++.+.|+.++|.+++++-..
T Consensus 323 ~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 323 Q---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred h---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 3445666777788889999999999999999998885 45678899999999999999888886643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-11 Score=112.04 Aligned_cols=440 Identities=10% Similarity=0.054 Sum_probs=299.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC--CCc-ccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN--PGT-FCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|+.||+..+..... +..++-..+.+=.++..+..|..+|++... |.+ ..|-..+-.=-..|+...|.++|+.-
T Consensus 90 ~RARSv~ERALdvd~r--~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVDYR--NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcccc--cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4677777777766533 666777777777777778888888876532 222 23444444444557788888888776
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------C
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------D 152 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~ 152 (523)
.. ..|+...|.+.++.=.+-...+.|..+++..+-. .|++.+|-.....-.+.|....|.++|+...+. +
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 65 4688888888888777777788888888777653 577777777777777788888888877776521 2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCC--C---ChhHHHHHHHHHHhcCCchHHHHH--------HHHHHHCCCCCCH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPE--R---NVVSWNIMISGYSKSGNPGCSLKL--------FREMMKSGFRGND 219 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~ 219 (523)
...+.+...-=.++..++.|.-+|.-... | ....|..+...--+-|+.....+. |+.+++.+ +-|-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 23344444444456667777777655433 1 234444444444445554443332 34444443 5577
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch--HHHHHHhh--------hhhhcCChHHHHHHHHhcCC--C-ChH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI--ILDTALID--------LYSKCQKVEVAQRVFDSMAD--R-NLV 286 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~--------~~~~~~~~~~a~~~~~~~~~--~-~~~ 286 (523)
.+|--.++.-...|+.+...++|+.++.. ++|-. ..|.-.|- .-....+.+.+.++|+...+ | ...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 78888888888889999999999998876 34421 11211111 11345788888888887755 2 223
Q ss_pred H----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 287 C----WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 287 ~----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
| |.....--.++.+...|.+++...+. ..|-..+|...|..=.+.+.++.+..++++..+ --+-+..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG-------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~ 472 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG-------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCY 472 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhH
Confidence 3 44444455678899999999988876 569999999999998999999999999999987 3344678
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+|......-...|+.+.|..+|.-++.+.. ...-...|-..+..-...|.++.|..+++.+++..+.. .+|.+.+..-
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPA-LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 888888888889999999999999885422 22235677777777788899999999999999987743 4777766554
Q ss_pred H-----hcC-----------ChhHHHHHHHHHHh
Q 038200 443 A-----VAG-----------QWEDVARVRELMKK 460 (523)
Q Consensus 443 ~-----~~g-----------~~~~A~~~~~~m~~ 460 (523)
. +.| ....|..+|++...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4 334 45677788887644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-12 Score=113.83 Aligned_cols=328 Identities=13% Similarity=0.090 Sum_probs=246.7
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChh-HHHHHHHHHHhcC
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV-SWNIMISGYSKSG 198 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~ 198 (523)
.|...+-...-.+.+.|..+.|+..|......-+..|.+.+....-..+.+.+..+....+..+.. .---+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444444445667888899999998888766777777777666666666666665555542211 1122445666777
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--CchHHHHHHhhhhhhcCChHH-HHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDLYSKCQKVEV-AQR 275 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~-a~~ 275 (523)
+.++++.-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.--...++.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 88889888888888887777766667777778889999999999999987421 155666665433222212211 222
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 276 VFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 276 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+ -.+.+--+.|...+..-|...++.++|...|++..+.+ |. ...|+.+.+-|...++...|.+-++++.+
T Consensus 322 v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-------p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 322 V-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-------PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred H-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-------cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 2 22333345677778888888999999999999999954 65 45677777889999999999999999997
Q ss_pred cCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 355 YKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
-.+.|-..|-.|.++|.-.+...=|+-.|++..+- -+.|...|.+|..+|.+.++.++|+..|+.+...+..+..+
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~---kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL---KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 34557889999999999999999999999999863 34478999999999999999999999999999887767789
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|+.+|.+.++..+|...|++-.+
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999987765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-12 Score=122.96 Aligned_cols=277 Identities=9% Similarity=0.003 Sum_probs=203.1
Q ss_pred cCChHHHHHHHhhcCCC--CcchHHHH-HHHHHhcCCHHHHHHHHhcCCC--CChhHHH--HHHHHHHhcCCchHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR--DLISWNSI-VSGHVRSGDMSAAHELFDIMPE--RNVVSWN--IMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~~~ 207 (523)
.|+++.|++.+...... ++..+..+ .....+.|+++.|.+.|.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57777777777665432 22222222 3333677888888888877765 3332222 2356778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
+++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8888764 335667778888888888888888888888887654322 12333344444445567777777777
Q ss_pred CC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 281 AD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 281 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
.+ .++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+ ..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~ 324 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QH 324 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hC
Confidence 54 46778888999999999999999999999884 3555322 23344456899999999999988 45
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
+-|+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+...+...|+.++|.+++++...+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~----~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK----QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888999999999999999999999995 5798888888999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=129.80 Aligned_cols=247 Identities=12% Similarity=0.134 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC--CCchHHHHHHhhhhhhcCChHHHHHHH
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSL--KPNIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
..+|...|..+... +.-+......+..+|...+++++|..+|+.+.+... --+..+|.+.+--+-+.=.+.---+-+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553332 222334444555555555555555555555554321 013344444433222111111000111
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC
Q 038200 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYK 356 (523)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (523)
-.+....+.+|.++..+|..+++.+.|++.|++.+. +.| ...+|+.+.+-+.....+|.|...|+.....
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-------LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-------cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 111122445555555555555555555555555555 334 3455555555555555555555555555431
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.+-+-..|..|...|.+.++++.|+-.|+++.+ +.| +.++...+...+.+.|+.++|+++++++..++|.++-.-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc----CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 011122223344455555555555555555553 333 233334444445555555555555555555555555555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
...+..+...+++++|+..++++++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHH
Confidence 5555555555555555555555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-12 Score=112.27 Aligned_cols=285 Identities=11% Similarity=0.034 Sum_probs=153.9
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCCH
Q 038200 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDM 169 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~ 169 (523)
++-...+.+++.+-.+.....|++-+...-+....+.-...|++.|+.+|+++.+. |..+|..++-.--....+
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 33444566666666666666666655555555555555667777777777777643 334454444332222222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC
Q 038200 170 SAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249 (523)
Q Consensus 170 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 249 (523)
.---+....+.+--..|...+.+-|.-.++.++|..+|++.++.+ +-....|+.+..-|....+...|.+-|+.+++..
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 111111111222233455555556666666666666666666643 2234455555566666666666666666666643
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
+.|-..|-.|..+|.-.+...-|+-+|++..+ .|...|.+|..+|.+.++.++|++.|.+....| ..+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~------dte~~ 467 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG------DTEGS 467 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc------ccchH
Confidence 33555666666666666666666666665533 355666666666666666666666666666654 33445
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhc---C-CCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFY---K-IKP-NFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+..|...+-+.++.++|.+.|++..+.. | +.| ......-|..-+.+.+++++|........
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 66666666666666666666665554421 1 111 11222224444555555555555444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-13 Score=125.40 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=194.4
Q ss_pred CHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 168 DMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGF--RGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 168 ~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
+..+|..+|..+++ ++ ......+..+|...+++++|.++|+.+.+... .-+..+|++.+..+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777654 23 34445667788888888888888888876421 12566777777655332 122222
Q ss_pred H-HHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 038200 243 G-YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG 318 (523)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 318 (523)
. .+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 2 22222 2345788888888888888888888888887663 345677777777778888888888888766
Q ss_pred CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc
Q 038200 319 GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 319 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 396 (523)
+.|+ -..|..+...|.++++++.|+-.|+++.+ +.| +......+...+.+.|+.++|+++++++...+ +-
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---~k 555 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---PK 555 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC---CC
Confidence 3343 34666677788888888888888888876 334 56666777778888888888888888877431 22
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|+..-..-+..+...+++++|...++++.++-|++..+|..++..|.+.|+.+.|+.-|.-+.+.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 34444444555677788888888888888888888888888888888888888888887777554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=131.96 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=100.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhC-CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCC
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNG-VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGD 168 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~ 168 (523)
+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++... +...+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3444555566666666664433332 2224444444555555556666666666665522 23344444444 46666
Q ss_pred HHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 038200 169 MSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDKTMASVLTACGRSARFNEGRSVHGYT 245 (523)
Q Consensus 169 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 245 (523)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777666655532 455667777788888888888888888876543 2456667778888888888888888888888
Q ss_pred HHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 246 VRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMA---DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
++.. |.+..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|++..+.. +
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p 245 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN------P 245 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS------T
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc------c
Confidence 8874 2357777888888888888888666665553 3466778888888888899999999999888853 3
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
.|......+..++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4677778888888889999999888877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-11 Score=116.52 Aligned_cols=427 Identities=11% Similarity=0.069 Sum_probs=270.8
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN----PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
..+..+.+.|+. |+..+|.+||..|+..|+++.|- +|..|.- -+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 578889999999 99999999999999999999998 8887763 35667899999988888887765
Q ss_pred CCCCCcccHHHHHHHHHccCCchH---HHHHHHHHH----HhCCCC--------------CchHHHHHHHHHHccCChHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVER---GGMCHGLAL----KNGVDF--------------ELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~~~~~--------------~~~~~~~l~~~~~~~g~~~~ 140 (523)
.|...||..|+.+|...||+.. +.+.+..+. ..|+.. ....-..++....-.|-++.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6888899999999999998754 333222221 122210 11112233344455677788
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHh-cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC
Q 038200 141 ARNMFVQMSPR--DLISWNSIVSGHVR-SGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR 216 (523)
Q Consensus 141 A~~~~~~~~~~--~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 216 (523)
+++++..++.. +. +..-+++-+.. ...+++-..+.....+ ++..+|..++.+-..+|+.+.|..++.+|.+.|++
T Consensus 158 llkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 88888777621 11 11112332222 2233444444444444 77788888888888888888888888888888887
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh--------------------------
Q 038200 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-------------------------- 270 (523)
Q Consensus 217 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------- 270 (523)
.+.+-|..++-+ .++...+..++.-|...|+.|+..|+...+..+...|..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 777777766654 666777777777777778887777766544444332221
Q ss_pred --------------------------------------------HHHHHHHHhcCC-------CChHHHHHHHHHHHhcC
Q 038200 271 --------------------------------------------EVAQRVFDSMAD-------RNLVCWNAMILGHCIHG 299 (523)
Q Consensus 271 --------------------------------------------~~a~~~~~~~~~-------~~~~~~~~li~~~~~~g 299 (523)
+..+++...+.. .++..|..++.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr------ 387 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR------ 387 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH------
Confidence 111111111100 01112222222
Q ss_pred ChHHHHHHHHHHHhCCCCC------------------------CCcCCCH----------------------------HH
Q 038200 300 KPEEGIKLFTALVNGTVAG------------------------GSISPDE----------------------------IT 327 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~------------------------~~~~p~~----------------------------~~ 327 (523)
++|.+........ ....||. ..
T Consensus 388 ------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 388 ------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222221110000 0001111 11
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
-+.++..|+..-+..+++..-++.... -+ +..|..||+.++...+.+.|..+..+....+..+..|...+..+...
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dL 537 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDL 537 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHH
Confidence 233344444444444444333333331 11 26788999999999999999999999986666666777788888888
Q ss_pred HHhcCCHHHHHHHHHHHhh---cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 408 CRFQGAVAMVERLAKSFVD---MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
..+.+....+..+++.+.+ ..|....++..+.+.....|..+...++++-+...|+..
T Consensus 538 L~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 538 LQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8999999999999888876 334345567777888888999999999999999988877
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.3e-12 Score=119.76 Aligned_cols=284 Identities=12% Similarity=0.082 Sum_probs=152.1
Q ss_pred cCCHHHHHHHHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND--KTMASVLTACGRSARFNEGRS 240 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~ 240 (523)
.|+++.|.+.+.+..+ |+ ...+-....++.+.|+++.|.+++.+..+.. |+. .........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555544433 22 1222233344555566666666665554432 222 122223444555566666666
Q ss_pred HHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 038200 241 VHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWN----AMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
.++.+.+.. |-+..+...+...+...|+++.|.+.+..+.+. +...+. .....+...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666555553 224445555555666666666665555555431 111111 111111222222323334444443
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH--HHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH--YWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 314 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
... ...+.+...+..+...+...|+.++|.+++++..+. .+.+... ...........++.+.+.+.+++..+.
T Consensus 254 ~~p--~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 254 NQP--RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HCC--HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 220 001125667777777788888888888888887773 2222211 111112223356777788888777653
Q ss_pred CCCCchH--HHHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 392 DNMSFES--IMWVSLLSLCRFQGAVAMVERLAK--SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 392 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.+-|+ ....++...|.+.|++++|.+.|+ ...+..| ++..+..++.++.+.|+.++|.+++++-..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233 556677778888888888888888 4556667 444577888888888888888888886533
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=117.61 Aligned_cols=279 Identities=8% Similarity=-0.006 Sum_probs=189.1
Q ss_pred ccCChHHHHHHHhhcCC--CCc-chHHHHHHHHHhcCCHHHHHHHHhcCCC--CCh--hHHHHHHHHHHhcCCchHHHHH
Q 038200 134 CFGAMDCARNMFVQMSP--RDL-ISWNSIVSGHVRSGDMSAAHELFDIMPE--RNV--VSWNIMISGYSKSGNPGCSLKL 206 (523)
Q Consensus 134 ~~g~~~~A~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~ 206 (523)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35666666666655542 221 2222333445566777777777766533 332 2333346677788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh---h----hcCChHHHHHHHHh
Q 038200 207 FREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY---S----KCQKVEVAQRVFDS 279 (523)
Q Consensus 207 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~a~~~~~~ 279 (523)
++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+.......-..++ . .....+...+.+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88888864 3355677788888888888888888888888876543322211111111 2 22223444555555
Q ss_pred cCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 280 MAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF---IGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 280 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..+ .+...+..+...+...|+.++|.+++++..+.. ||.... ..........++.+.+.+.+++..+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 543 377888889999999999999999999999854 554421 1222223445788889999988887
Q ss_pred hcCCCCCh--HHHHHHHHHHHcCCChHHHHHHHHh--CCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 354 FYKIKPNF--AHYWCMANLYAGAELTEEAEEILRK--MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 354 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
. .+-|+ ....++...+.+.|++++|.+.|+. ..+ ..|+...+..+...+...|+.++|.+++++...
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~----~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK----EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 33344 6777899999999999999999994 442 478888888889999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-10 Score=100.91 Aligned_cols=266 Identities=12% Similarity=0.157 Sum_probs=137.2
Q ss_pred CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHH
Q 038200 66 CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMF 145 (523)
Q Consensus 66 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 145 (523)
.+.++|+++|-+|.+.+ +-+..+-.+|.+.|-+.|..+.|+++++.+.++ ||...-..+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~l---------------- 108 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLL---------------- 108 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHH----------------
Confidence 45556666666665532 222234444555555555666666555555442 2221111111
Q ss_pred hhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-C--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH---
Q 038200 146 VQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE-R--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND--- 219 (523)
Q Consensus 146 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--- 219 (523)
....+..-|...|-+|.|+.+|..+.+ + -......|+..|-...+|++|+++-+++.+.+-.+..
T Consensus 109 ---------Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 109 ---------ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred ---------HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 111223334555556666666655554 1 2334555677777777777777777777766544432
Q ss_pred -HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----HHHHHHHHH
Q 038200 220 -KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----VCWNAMILG 294 (523)
Q Consensus 220 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~ 294 (523)
..|.-+...+....+.+.|...+.+..+.+. ..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|..+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~ 258 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYEC 258 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 2344455555556666777777776666542 2334444455666666666666666666655443 244555566
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
|.+.|+.++....+.++.+.. +....-..+........-.+.|..++.+-.. -+|+...+..|+..-
T Consensus 259 Y~~lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 259 YAQLGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhh
Confidence 666666666666666666533 3322223333322333333444433333322 146666666665544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-10 Score=106.89 Aligned_cols=268 Identities=12% Similarity=-0.000 Sum_probs=211.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+......-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=..+++.- |....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44455555667778899999999999998864 6666777777778888888887777777777763 446788889998
Q ss_pred hhhhcCChHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNL---VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 339 (523)
.|...|+..+|.++|.+...-|. ..|-.+..+|+-.|..+.|+..+....+.- +-...-+.-+..-|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~------~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM------PGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc------cCCcchHHHHHHHHHHhc
Confidence 89999999999999998765433 579999999999999999999998877641 112222333445678889
Q ss_pred cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc----hHHHHHHHHHHHHhcCCHH
Q 038200 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF----ESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~ 415 (523)
+.+.|.++|.+... -.+.|+..++-+.-+....+.+.+|..+|+..+..-....+ -..+++.|..+|++.+.++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999986 34456788888888888889999999999877622111111 2457888889999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 416 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+|...+++++.+.|.++.+|..++-+|...|+++.|++.|.+..-
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-10 Score=102.68 Aligned_cols=280 Identities=10% Similarity=0.077 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
.|++..|++...+-.+ .....|..-+.+.-+.|+.+.+-.++.+.-+.--.++...+.+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555556555555433 1222333344455556666666666666655422344444555555566666666666666
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-----------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
.++.+.+. .++.+......+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66665542 245556666666666666666666666665421 235666666666666666666677666
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
..+ .+-++..-.+++.-+.+.|+.++|.++..+..+. +..|+. ...-...+-++.+.-++..++....
T Consensus 256 pr~------lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~- 323 (400)
T COG3071 256 PRK------LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ- 323 (400)
T ss_pred cHH------hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-
Confidence 554 3455666677777778888888888888887775 666551 1122334556666666665555533
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+.++..+.++...|.+++.+.+|..+++.+.+..| +...|..++.++.+.|+..+|.+++++-...
T Consensus 324 --h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 --HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 233446777788888888888888888888888877 5668888888888888888888888776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-10 Score=100.87 Aligned_cols=388 Identities=11% Similarity=-0.024 Sum_probs=252.7
Q ss_pred HHHHHHhhccCCchhHHHHhccCC--CCC-cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHcc
Q 038200 25 INLLKHSADFGSPDYTVLVFKCIN--NPG-TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY-TFVSLFGSCAKT 100 (523)
Q Consensus 25 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~ 100 (523)
...-+-|-+.|++++|++.+.... .|+ .+-|...-.+|...|+++++++--...++. .|+-. .+..=..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 344456778899999999999875 477 777888999999999999999888887764 56532 444445556666
Q ss_pred CCchHHHHHHHHHHH-hCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHH--------------
Q 038200 101 GCVERGGMCHGLALK-NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR---DLISWNSIVSG-------------- 162 (523)
Q Consensus 101 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~-------------- 162 (523)
|++++|+.=..-.-- .|+. +..+--.+=+.+-+.| ...+.+-+.+-.+| +....++....
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 777766532221111 1111 2211111111111111 12222222211111 11111111111
Q ss_pred ---------HH--hcC---CHHHHHHHHhcCC-------CC---C------hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 163 ---------HV--RSG---DMSAAHELFDIMP-------ER---N------VVSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 163 ---------~~--~~~---~~~~a~~~~~~~~-------~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
+. ..+ .+..|...+.+-. .. | ..+.......+.-.|+.-.|..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 10 011 2333333332211 01 1 11222222234557889999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHH
Q 038200 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWN 289 (523)
Q Consensus 213 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 289 (523)
....++. .|--+...|....+.++....|....+.+. .+..+|..-..++.-.++++.|..-|++...- ++..|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 7544333 377777889999999999999999999763 36777877788888889999999999998763 445666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc----CCCCChH--H
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY----KIKPNFA--H 363 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~--~ 363 (523)
.+.-+..+.+++++++..|++.++. ++-.+..|+.....+..+++++.|.+.|+...+.- ++..+.. +
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 6666777889999999999999986 45557899999999999999999999999988631 1111222 2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
-..++..- -.+++..|.+++++..+ +.| ....+..|...-.+.|+.++|.++|++...+-.
T Consensus 507 ~Ka~l~~q-wk~d~~~a~~Ll~KA~e----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 507 HKALLVLQ-WKEDINQAENLLRKAIE----LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHhhhc-hhhhHHHHHHHHHHHHc----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22333222 34899999999999996 445 467788888889999999999999999887544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-11 Score=107.21 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=153.7
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..... +.+...+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHH
Confidence 45566667777777777777777776543 245667777888888888888888888888754 334567777
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+...|++++|...++++............+..+...+...|++++|.+.+++.... .+.+...+..+...+..
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHH
Confidence 788888889999999999988764122234556777888889999999999999988753 22345667777888889
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|++++|...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999888878888888899999999999999988877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-10 Score=99.92 Aligned_cols=267 Identities=10% Similarity=0.074 Sum_probs=142.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGN---DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
+|.+.|.+.|..+.|+.+-+.+.++.--+. ....-.|..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 344444455555555554444443210000 0112223333444455555555555554432 112334444555555
Q ss_pred hcCChHHHHHHHHhcCCCC--------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHh
Q 038200 266 KCQKVEVAQRVFDSMADRN--------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACV 336 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~ 336 (523)
...+|++|+++-+++.+-+ ...|.-+...+....+.+.|..++.+..... |..+ .=..+.+...
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-------~~cvRAsi~lG~v~~ 225 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-------KKCVRASIILGRVEL 225 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-------ccceehhhhhhHHHH
Confidence 5555555555554443211 1234445555556667777777777776643 4333 2233445666
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
..|+++.|.+.|+.+.+. +..--+.+...|..+|...|+.++....+.++.+...| ......+...-....-.+.
T Consensus 226 ~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 226 AKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----ADAELMLADLIELQEGIDA 300 (389)
T ss_pred hccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC----ccHHHHHHHHHHHhhChHH
Confidence 777777777777777764 33333556667777777777777777777777654322 2222333333333334566
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHH---hcCChhHHHHHHHHHHhCCCccCCce
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYA---VAGQWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
|..++.+-+...| +...+..|+..-. ..|++.+....++.|....++..|..
T Consensus 301 Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 301 AQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 6666666666667 3444555554433 23567777788888877767776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-11 Score=106.88 Aligned_cols=231 Identities=11% Similarity=0.030 Sum_probs=196.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHH-HHHHHHHHHh
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVC-WNAMILGHCI 297 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~ 297 (523)
.-..+.++|.+.|.+.+|...++..++. .|-+.+|..|..+|.+..+++.|+.+|.+-.+ |..+| ..-+...+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3467889999999999999999988886 35677888899999999999999999998765 44444 4456777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
.++.++|.++|+...+.. +.+.....++...|.-.++.+.|+.+|+++.+. |+. ++..|..+.-+|.-.+++
T Consensus 303 m~~~~~a~~lYk~vlk~~------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH------PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHhHHHHHHHHHHHHhcC------CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcch
Confidence 899999999999999864 445667777778888899999999999999996 765 788999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
+-++.-|++.............+|..+.......||+..|.+.|+.++..+|++..+++.|+..-.+.|+.++|..++..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887543222334678888888888999999999999999999999999999999999999999999999998
Q ss_pred HHhC
Q 038200 458 MKKR 461 (523)
Q Consensus 458 m~~~ 461 (523)
.+..
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=97.61 Aligned_cols=276 Identities=9% Similarity=0.012 Sum_probs=190.2
Q ss_pred cCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 135 FGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPE----RNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 135 ~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
.|++..|++.+.+-.+. ....|..-..+--+.||.+.+-+.+.+..+ ++...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35555555555554322 222333333444455666666666666544 23444555566667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 208 REMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 208 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777654 334556667777777777777777777777777654332 34555555555555555555566666
Q ss_pred CC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 281 AD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 281 ~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+ ..|+ ....-.+.+.++...-.+..++-.+. .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-----~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~--h 324 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-----WDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ--H 324 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----cChh----HHHHHhhcCCCCchHHHHHHHHHHHh--C
Confidence 43 456777788888899999999999999998877 5555 22334566778888888888877774 4
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+.++..+.+|...|.+.+.+.+|.+.|+...+ ..|+..+++-+..++...|+...|.+..+...-
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~----~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALK----LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh----cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44558888899999999999999999998774 688999999999999999999999999888775
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-10 Score=111.61 Aligned_cols=269 Identities=10% Similarity=0.055 Sum_probs=140.9
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC
Q 038200 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD 152 (523)
Q Consensus 73 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 152 (523)
.++-.+...|+.|+..||.+++..|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888887 8888877777777888888888888877776664 667
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhc
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM-KSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~ 231 (523)
..+|..++.+|...||+..- +..++ -.-.++..+...|.-.....++..+. ..+.-||..+. +.-...
T Consensus 83 aDtyt~Ll~ayr~hGDli~f-e~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~ 151 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILF-EVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVL 151 (1088)
T ss_pred hhHHHHHHHHHHhccchHHH-HHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHH
Confidence 77888888888888876551 11111 11112223333333333333332211 11122232221 111122
Q ss_pred cccHHHHHHHHHHHHHcCC-CCchHHHHHHhhhhh-hcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSL-KPNIILDTALIDLYS-KCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
.|.++.+.+++..+-.... .|... ++.-.. ....+++-..+.....+ ++..++..++..-...|+.+.|..++
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2333333333322211100 00000 011111 11123333333333333 55556666666656666666666666
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
.+|.+.| ++.+..-|-.|+-+ .++...+..+++.|.+. |+.|+..|+...+..+..
T Consensus 228 ~emke~g-----fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKG-----FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcC-----CCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhc
Confidence 6666665 55555555555443 45555555555555554 666666555544444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-08 Score=95.11 Aligned_cols=429 Identities=11% Similarity=0.014 Sum_probs=282.5
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFG 95 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 95 (523)
.++.+.....-.+...|+-++|........ ..+.++|..+.-.+....++++|++.|......+ +.|...+.-+.-
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlsl 117 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSL 117 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 677777766667777899999998887654 3567899999999999999999999999999865 455567777666
Q ss_pred HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC-----CCcchHHHH------HHHHH
Q 038200 96 SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP-----RDLISWNSI------VSGHV 164 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------l~~~~ 164 (523)
.-++.|+++..........+..+. ....|..+..++.-.|+...|..++++..+ ++...|.-. .....
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 667889999998888888887433 667888888899999999999999888752 344433332 23356
Q ss_pred hcCCHHHHHHHHhcCCCC--Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccccHHHHH-
Q 038200 165 RSGDMSAAHELFDIMPER--NVV-SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVL-TACGRSARFNEGR- 239 (523)
Q Consensus 165 ~~~~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~- 239 (523)
+.|..+.|.+.+..-... |-. .-..-...+.+.++.++|..+|..++.. .||..-|...+ .++.+..+.-++.
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk 274 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALK 274 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 788889998888776642 222 2234456788999999999999999986 46666665544 4443333333333
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChH-HHHHHHHhcCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVE-VAQRVFDSMADR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVA 317 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 317 (523)
.+|....+.- |....-.-+--......++. ..-.++..+.+. -+.++..+...|-.....+-..++...+.. +..
T Consensus 275 ~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~-~L~ 351 (700)
T KOG1156|consen 275 ALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH-SLS 351 (700)
T ss_pred HHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh-hcc
Confidence 6666555431 11111111111111112222 233333333332 233445555544333322211122211111 111
Q ss_pred CC---------C-cCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHH
Q 038200 318 GG---------S-ISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 318 ~~---------~-~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
+. . -+|.. .++..++..+-..|+++.|..+++.... ..|+ +..|..=.+.+...|.+++|..++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10 0 14444 3556677888999999999999999986 3454 566766778999999999999999
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------Chh-hHH--HHHHHHHhcCChhHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFS-RYQ--FLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~-~~~--~l~~~~~~~g~~~~A~~~~ 455 (523)
++..+. -.+|..+-..-.....+..+.++|..+...+...+-+ +.. +|. .-+.+|.++|++.+|++=|
T Consensus 429 ~ea~el---D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 429 DEAQEL---DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHhc---cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 999865 3567666556667778899999999999988775432 111 222 2367899999999998877
Q ss_pred HHHHh
Q 038200 456 ELMKK 460 (523)
Q Consensus 456 ~~m~~ 460 (523)
..+.+
T Consensus 506 h~i~k 510 (700)
T KOG1156|consen 506 HEIEK 510 (700)
T ss_pred hhHHH
Confidence 76644
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=114.17 Aligned_cols=261 Identities=10% Similarity=-0.021 Sum_probs=183.3
Q ss_pred ChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccccHHHHHHHHHHHHH
Q 038200 183 NVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGN-DKTMASVLTACG---------RSARFNEGRSVHGYTVR 247 (523)
Q Consensus 183 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 247 (523)
+...|...+.+-.. .+++++|..+|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555554322 23467899999999885 444 445555554443 33458899999999998
Q ss_pred cCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
.+ +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. |+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-------P~ 404 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-------PT 404 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CC
Confidence 75 33678888888889999999999999999754 3 45678888899999999999999999999854 65
Q ss_pred HH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchH-HHH
Q 038200 325 EI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES-IMW 401 (523)
Q Consensus 325 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ 401 (523)
.. .+..++..+...|++++|...++++.+. .+| ++..+..+..+|...|++++|.+.++++.. ..|+. ...
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~----~~~~~~~~~ 478 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST----QEITGLIAV 478 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh----ccchhHHHH
Confidence 32 3334455566789999999999998763 334 455677788889999999999999999774 24443 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+.+...+...| +.|...++.+.+..-..+.....+...|.-.|+.+.+... +++.+.+
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44444566666 4777777777663222222223366677777888877776 7776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-09 Score=99.24 Aligned_cols=415 Identities=10% Similarity=-0.016 Sum_probs=286.8
Q ss_pred CCCCCChhHHHHHHHHhhccCCchhHHHHhcc--CCCCCcccHHHHHHHHHhCCCchHHHHHHH----HHHHC-------
Q 038200 15 GLFFNNSFWTINLLKHSADFGSPDYTVLVFKC--INNPGTFCVNAVIKAYSNSCVPDQGVVFYL----QMIKN------- 81 (523)
Q Consensus 15 g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~m~~~------- 81 (523)
|+. .+|.-.--+++++.-.|+.+.|..+... +.+.|..+.......+.+..++++|..++. .+...
T Consensus 44 ~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 44 GLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred hcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 444 4555555566677777778887777653 457888888889999999999999999988 32210
Q ss_pred --CCCCCccc----HHHHHH-------HHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc-------------
Q 038200 82 --GFMPNSYT----FVSLFG-------SCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF------------- 135 (523)
Q Consensus 82 --~~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 135 (523)
-+.+|..- -+.-.. .+....++++|...+.+.+...+. .-..+..|+....-.
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 01112111 111111 123334667777777776654332 122222222222111
Q ss_pred -----CChHHHHHHHhhc----C----------------CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHH
Q 038200 136 -----GAMDCARNMFVQM----S----------------PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSW 187 (523)
Q Consensus 136 -----g~~~~A~~~~~~~----~----------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 187 (523)
.+.+.-+..|+-. . ..++........-+...+++.+..++++.+.+ +....+
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~ 281 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCL 281 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchH
Confidence 1112222222211 0 01223333344456778999999999998876 344556
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
..-|.++...|+..+-+.+=.+|++. .+-...+|-.+.--|...|+..+|.+.|.+....+. .-...|-.+.+.|.-.
T Consensus 282 ~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 282 PLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhc
Confidence 66677889999999988888889886 455778999999999999999999999999887542 2357888899999999
Q ss_pred CChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 268 QKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
|.-+.|+..|....+ + .-..+--+..-|.+.++...|.+.|.+..... +.|+..++-+.-.....+.+.+|
T Consensus 360 ~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~------P~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA------PSDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred chHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCcchhhhhhhheeehHhhhHHH
Confidence 999999988877644 1 22233344556788999999999999998842 34567777777777778999999
Q ss_pred HHHHHHhhHhc-CCC----CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 038200 345 RKYFRQMIDFY-KIK----PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 345 ~~~~~~~~~~~-~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
..+|+.....- .+. -...+++.|..+|.+.+++++|+..+++.+.. .+.+..++.++.-.+...|+++.|..
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l---~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL---SPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc---CCCchhHHHHHHHHHHHhcChHHHHH
Confidence 99999887310 011 13456888999999999999999999998864 45678888888889999999999999
Q ss_pred HHHHHhhcCCCChhhHHHHHHHH
Q 038200 420 LAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 420 ~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.|.+++.+.|++..+-..|..+.
T Consensus 511 ~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 511 HFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999998865555554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-09 Score=100.78 Aligned_cols=412 Identities=14% Similarity=0.052 Sum_probs=236.6
Q ss_pred CCCCCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cccH
Q 038200 15 GLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPN-SYTF 90 (523)
Q Consensus 15 g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 90 (523)
.+. .++..|..|.-.+..+|+++.+.+.|++... .....|+.+-..+...|....|+.+++.-....-.|+ ...+
T Consensus 318 ~~q-nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQ-NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344 5777888888888888888888888877543 3445677777788888888888888776654322233 3333
Q ss_pred HHHHHHHH-ccCCchHHHHHHHHHHHhC--C--CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 91 VSLFGSCA-KTGCVERGGMCHGLALKNG--V--DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 91 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
...-..|. +.+.+++++.+-.+++... . ......|..+.-+|...-. ..+..+ -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HH
Confidence 33334443 4466666666666655521 1 1123334444444432100 000000 01
Q ss_pred cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
.....++++.+++..+ .|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-++...+++.+|+.+.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1122344444544432 1222222222334555666666666666666544555666666666666666666666666
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-------------------------------CC-hHHHHH
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-------------------------------RN-LVCWNA 290 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~-~~~~~~ 290 (523)
+.....- +-|-.....-++.-...++.+++......+.. .+ ..++..
T Consensus 537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ 615 (799)
T KOG4162|consen 537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRY 615 (799)
T ss_pred HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHH
Confidence 5554431 11111111111111123333333332222110 01 112222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC--C------HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISP--D------EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+..-.... ...+..-.. +.... +.| + ...|......+.+.+..++|...+.+..+ -.+-...
T Consensus 616 ls~l~a~~--~~~~~se~~-Lp~s~-----~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~ 685 (799)
T KOG4162|consen 616 LSSLVASQ--LKSAGSELK-LPSST-----VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSAS 685 (799)
T ss_pred HHHHHHhh--hhhcccccc-cCccc-----ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHH
Confidence 22111111 000000000 11111 222 2 12344555677888999999988888877 3445667
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCChhhHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVER--LAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~ 439 (523)
.|......+...|..++|.+.|..... +.|+ .....++...+.+.|+...|.. ++..+.+++|.++.+|..|+
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777778888999999999999999885 4554 5677788888999999888888 99999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 038200 440 NVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++.+.|+.++|.+.|....+..
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999887653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-08 Score=90.32 Aligned_cols=268 Identities=10% Similarity=0.002 Sum_probs=159.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHH---HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWN---IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTA 228 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 228 (523)
|......+...+...|+.++|+..|++...-|..+.. ...-.+.+.|+.+....+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 5555666666666667777777777665543332221 11223445666666666665554431 1222233333333
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
+...++++.|..+-++.++.+ +.+...+-.-..++...++.+.|.-.|+.... -+..+|.-|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 445566666666666665543 22344444444556666777777666665533 25567777777777777777777
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHH-HHHh-hcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHH
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVI-CACV-RAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
.+-+...+. .+.+..+...+. ..|. ...--++|.+++++... +.|+ ......+...+...|+.++++.
T Consensus 389 ~~An~~~~~------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 389 ALANWTIRL------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHH------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 666655543 233444544442 2222 22334667777776654 4454 3455566677777888888888
Q ss_pred HHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 383 ILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
++++... ..||....+.|...+...+.+++|...|..++.++|++..+
T Consensus 460 LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 460 LLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 8887764 46777777777777877888888888888888888876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.5e-10 Score=110.25 Aligned_cols=240 Identities=15% Similarity=0.131 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHc-----C-CCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--------CC
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRT-----S-LKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--------RN 284 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~ 284 (523)
.+...+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++.+|..+|+++.. .+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666777888888888888888877664 1 12333 3334577788888888888888887743 12
Q ss_pred ---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC-cCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--C
Q 038200 285 ---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS-ISPDE-ITFIGVICACVRAELLTEGRKYFRQMIDFYK--I 357 (523)
Q Consensus 285 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 357 (523)
..+++.|..+|.+.|++++|..++++..+--....+ ..|.. .-++.+...|...+++++|..++++..+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 246788888899999988888777766442100000 12332 2466677788999999999999998776533 2
Q ss_pred CC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC----CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 038200 358 KP----NFAHYWCMANLYAGAELTEEAEEILRKMPEDN----DNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVD-- 426 (523)
Q Consensus 358 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 426 (523)
.+ -..+++.|...|...|++++|.+++++++... .+..+ ....++.+...|.+.+++.+|.++|.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 24678999999999999999999999876432 22223 256677888889999999989888887765
Q ss_pred --cCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 427 --MDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 427 --~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.+|+ ...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 45688999999999999999999988775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-12 Score=83.02 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038200 50 PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99 (523)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 99 (523)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999998999999999999888864
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-08 Score=93.15 Aligned_cols=292 Identities=12% Similarity=0.139 Sum_probs=144.3
Q ss_pred cCCchHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc---hHHHHHHhhhhhhc
Q 038200 197 SGNPGCSLKLFREMMKSGFRGN------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN---IILDTALIDLYSKC 267 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 267 (523)
.|+..+....|.+.++. +.|. ...|..+...|-..|+++.|..+|++..+-..+.- ..+|..-.++-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45556666666666554 2221 23456666667777777777777777666543321 34555556666666
Q ss_pred CChHHHHHHHHhcCC---------------------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--------
Q 038200 268 QKVEVAQRVFDSMAD---------------------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-------- 318 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------- 318 (523)
.+++.|+++.++... ++...|...+..--..|-++....+++++++..+..
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 667777766665422 122334444444444455555555555555543100
Q ss_pred -----------------CC----cCCCH-HHHHHHHHHHhh---cCcHHHHHHHHHHhhHhcCCCCChHHHHHH--HHHH
Q 038200 319 -----------------GS----ISPDE-ITFIGVICACVR---AELLTEGRKYFRQMIDFYKIKPNFAHYWCM--ANLY 371 (523)
Q Consensus 319 -----------------~~----~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~ 371 (523)
.| -.|+. ..|+..+.-+.+ ....+.|..+|++..+ +.+|...-+-.| ...-
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 00 11221 123333332221 2345666666666666 455432211111 1122
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHhcCC
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD--FSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 447 (523)
-+.|-...|+++++++... +++. -..|+..+.-....=-......+|+++++.-|++ .......+..=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~---v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA---VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh
Confidence 2345566666666665432 3332 2345555442222222344456667777665642 2233445566677888
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHH
Q 038200 448 WEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMM 499 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 499 (523)
.+.|..++.--.+.--+... .++=...+.|-...++ ++.+.+|-++.
T Consensus 674 idRARaIya~~sq~~dPr~~----~~fW~twk~FEvrHGn-edT~keMLRik 720 (835)
T KOG2047|consen 674 IDRARAIYAHGSQICDPRVT----TEFWDTWKEFEVRHGN-EDTYKEMLRIK 720 (835)
T ss_pred HHHHHHHHHhhhhcCCCcCC----hHHHHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 88888888766553211111 1223344455555555 44444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=100.56 Aligned_cols=231 Identities=12% Similarity=0.112 Sum_probs=196.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC 267 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 267 (523)
+.+..+|.+.|-+.+|.+.|+...+. .|-..||..|-++|.+..++..|..++.+-++. ++.++....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56888999999999999999988885 577789999999999999999999999988876 344666666677888889
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
++.++|.++|+...+ .++.....+...|.-.++.+-|+..|+++...| .-++..|+.+.-+|.-.+++|-+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhh
Confidence 999999999999866 355666677778888999999999999999998 35677899999999999999999
Q ss_pred HHHHHHhhHhcCCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 345 RKYFRQMIDFYKIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
+.-|++.... --.|+ ...|..|.......|++.-|.+.|+-.+.. -..+...++.|.-.-.+.|+++.|..+++
T Consensus 378 L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 378 LPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999998874 34354 567888999999999999999999998854 24457788888888899999999999999
Q ss_pred HHhhcCCCC
Q 038200 423 SFVDMDPQD 431 (523)
Q Consensus 423 ~~~~~~p~~ 431 (523)
.+....|+-
T Consensus 454 ~A~s~~P~m 462 (478)
T KOG1129|consen 454 AAKSVMPDM 462 (478)
T ss_pred HhhhhCccc
Confidence 999988863
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-09 Score=100.53 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=159.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHcc
Q 038200 56 NAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCF 135 (523)
Q Consensus 56 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (523)
..++..| ..+++...++..+..++. .+-...|.....-.+...|+.++|.......++..+. +...|..+.-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344433 446777777777777663 2333344444444455668888888888877776555 777888888888888
Q ss_pred CChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHH
Q 038200 136 GAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFRE 209 (523)
Q Consensus 136 g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 209 (523)
.++++|++.|.... +.|...|.-+--..++.|+++.....-.+..+ .....|..++.++.-.|+...|..++++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 34566666666666677777777666666554 3446688888888888899999888888
Q ss_pred HHHCCC-CCCHHHHHHHH------HHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC
Q 038200 210 MMKSGF-RGNDKTMASVL------TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD 282 (523)
Q Consensus 210 m~~~~~-~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 282 (523)
..+... .|+...|.... ......|..+.|.+.+..-... +.-....-..-...+.+.+++++|..++..+..
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 877642 45655554332 2245567777777666544332 111223333455667788888999888888866
Q ss_pred --CChHHHH-HHHHHHHhcCChHHHH-HHHHHHHh
Q 038200 283 --RNLVCWN-AMILGHCIHGKPEEGI-KLFTALVN 313 (523)
Q Consensus 283 --~~~~~~~-~li~~~~~~g~~~~a~-~~~~~m~~ 313 (523)
||..-|. .+..++.+-.+.-+++ .+|....+
T Consensus 248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3333333 3334443222333333 55555544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-10 Score=98.50 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (523)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~---------- 99 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNG---------- 99 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH----------
Confidence 445555555556666666666665555432 22334444555555555555555555555554321 123
Q ss_pred hhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHH
Q 038200 265 SKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEG 344 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (523)
..+..+...+...|++++|...+++...... .......+..+...+...|++++|
T Consensus 100 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 100 ---------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred ---------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHH
Confidence 3344444455555555555555555554320 111233444455555666666666
Q ss_pred HHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038200 345 RKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 424 (523)
...+++..+. .+.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+...|+.+.|..+.+.+
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT---YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666665552 2223445555666666666666666666665532 1223344444445555566666666665555
Q ss_pred hhc
Q 038200 425 VDM 427 (523)
Q Consensus 425 ~~~ 427 (523)
...
T Consensus 230 ~~~ 232 (234)
T TIGR02521 230 QKL 232 (234)
T ss_pred Hhh
Confidence 443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-08 Score=87.34 Aligned_cols=454 Identities=12% Similarity=0.062 Sum_probs=243.5
Q ss_pred HhhccCCchhHHHHhccCCC---CCcccHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchH
Q 038200 30 HSADFGSPDYTVLVFKCINN---PGTFCVNA-VIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVER 105 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 105 (523)
-+....++..|+.+++.-.. ....+.+. +...+-..|++++|..++..+.+.. .|+...+..|.-+..-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 34445667777777654321 11112222 2334456677777777777766654 4555555555555556677777
Q ss_pred HHHHHHHHHHhCCCCCchH-HHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C
Q 038200 106 GGMCHGLALKNGVDFELPV-MNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R 182 (523)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~ 182 (523)
|.++.... |+... -..|+....+.++-++-..+-+.+... ...--++....-..-.+.+|++++.++.. |
T Consensus 110 A~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 110 AKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 76665433 23333 333444445566655555444444321 12222333333344568889999988875 4
Q ss_pred ChhHHHH-HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--ccHHHHH------------HHHHHHHH
Q 038200 183 NVVSWNI-MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--ARFNEGR------------SVHGYTVR 247 (523)
Q Consensus 183 ~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~------------~~~~~~~~ 247 (523)
+-...|. +.-+|.+..-++-+.++++-..+. ++.+....+..+....+. |+..+.+ ...+.+.+
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 4344443 445677888888888888777764 333334444443333322 2211110 11112222
Q ss_pred cCC------------CC-----chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcC-------ChHH
Q 038200 248 TSL------------KP-----NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG-------KPEE 303 (523)
Q Consensus 248 ~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~ 303 (523)
.+. -| -+..--.|+-.|.+.++..+|..+.+++....+.-|-.-.-.++..| ...-
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 110 01 11233346667889999999999999987654443332222233333 3444
Q ss_pred HHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
|.+.|.-.-..+ ..-| ..--.++...+.-..++++.+-+++.+..- -...|...+ .+..+++..|++.+|.+
T Consensus 342 AqqffqlVG~Sa-----~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEe 414 (557)
T KOG3785|consen 342 AQQFFQLVGESA-----LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEE 414 (557)
T ss_pred HHHHHHHhcccc-----cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHH
Confidence 555554433333 2222 112234445555566788888888888773 333344444 47888888888888888
Q ss_pred HHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 383 ILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+|-.+.. ..++ +..+|.+++ .+|.+.+..+.|-.++-+.. .|. .......+++-|.+++.+=-|-+.|+.+..
T Consensus 415 lf~~is~--~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 415 LFIRISG--PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHhhhcC--hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 8887772 2223 344454444 46677777777766543321 222 333455667778888888777777777755
Q ss_pred CCCccCCceeEEEeCC----eEEEEe--cCCCCchHHHHHHHHHHhcccCCcc
Q 038200 461 RRMGRMPGCRLVDLKE----VVEKLK--VGHFWRGGMKEEVNKMMECRQSRSL 507 (523)
Q Consensus 461 ~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ 507 (523)
. .|+|.. |.--.+ .....+ ..+|...+.+.++--+++..|+...
T Consensus 490 l--DP~pEn-WeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~ 539 (557)
T KOG3785|consen 490 L--DPTPEN-WEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQC 539 (557)
T ss_pred c--CCCccc-cCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchH
Confidence 4 444432 111000 001111 2225666666666667777666543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.5e-12 Score=79.88 Aligned_cols=50 Identities=36% Similarity=0.602 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988874
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.8e-10 Score=110.66 Aligned_cols=228 Identities=13% Similarity=0.036 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh---------hcCChHHHHHHHHhcCC-
Q 038200 218 NDKTMASVLTACG-----RSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS---------KCQKVEVAQRVFDSMAD- 282 (523)
Q Consensus 218 ~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~- 282 (523)
+...|...+.+.. ..+++++|...|++..+... .+...+..+..+|. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444555555431 23457899999999998642 24556666655543 23458899999998865
Q ss_pred --CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 283 --RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 283 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
.+...+..+...+...|++++|...|++..+.. |+ ...+..+...+...|++++|...++++.+. .|
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P 403 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-------PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DP 403 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC
Confidence 356788888889999999999999999999954 65 567888888999999999999999999874 34
Q ss_pred C-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 360 N-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 360 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
+ ...+..++..+...|++++|.+.++++... ..|+ ...+..+..++...|+.++|...++++....|.+......
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~ 480 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNL 480 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHH
Confidence 3 333344455567789999999999998743 2343 4445666677889999999999999988888877778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 038200 438 LLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...|...| ++|...++.+.+.
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHHH
Confidence 888888888 4888888877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-09 Score=89.82 Aligned_cols=305 Identities=13% Similarity=0.033 Sum_probs=173.4
Q ss_pred HHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH---HHHhcCCHHHHHHHHhcCCC--CChhH-HHHHHHHHHhcCCc
Q 038200 127 SLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS---GHVRSGDMSAAHELFDIMPE--RNVVS-WNIMISGYSKSGNP 200 (523)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~~~~ 200 (523)
-|...+...|++..|+.-|....+-|+..|.++.+ .|...|+...|+.-|++..+ ||-.. --.-...+.+.|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 34455555666666666666666666665555543 35566666666666666554 33211 11112345667777
Q ss_pred hHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 201 GCSLKLFREMMKSGFRGND--------------KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
+.|..-|+..++....-+. ......+..+...|+...|+.....+++.. +.+...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 7777777776665311100 111223344556677777777777777653 4466777777777777
Q ss_pred cCChHHHHHHHHhcC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 267 CQKVEVAQRVFDSMA---DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
.|++..|+.-++... ..++.+.--+-..+...|+.+.++...++..+ +.||-..... .-+.+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-------ldpdHK~Cf~------~YKklkK 268 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-------LDPDHKLCFP------FYKKLKK 268 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-------cCcchhhHHH------HHHHHHH
Confidence 777777776665543 34555666666666777777777777777776 3465431111 0111122
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
..+.++.|.+ ..+.++|.++++..+...+......+ ....+..+-.++...|++.+|++...
T Consensus 269 v~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 269 VVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2222222222 23456666666666665543211111 11223333344556677777777777
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 423 SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 423 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+++++|+|..++..-+.+|.-..+|++|+.-|+...+.+
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777777777777777777777777777777777665543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-08 Score=95.05 Aligned_cols=419 Identities=9% Similarity=0.053 Sum_probs=252.3
Q ss_pred HHHHhhccCCchhHHHHhccCCC--CCccc-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH----c
Q 038200 27 LLKHSADFGSPDYTVLVFKCINN--PGTFC-VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA----K 99 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~ 99 (523)
...++...|++++|++.++.... .|..+ .......+.+.|+.++|..+|..+++.+ |+...|...+..+. .
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 34567889999999999987553 45444 4566788999999999999999999975 77777666666655 1
Q ss_pred --cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh-HHHHHHHhhcCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 038200 100 --TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM-DCARNMFVQMSPRDL-ISWNSIVSGHVRSGDMSAAHEL 175 (523)
Q Consensus 100 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~ 175 (523)
..+.+...++++.+...-+ .......+.-.+..-..+ ..+...+..+....+ .+++.+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 1245677888888866532 222222121111111112 223333333333333 4555555555544444444444
Q ss_pred HhcCC------------------CCChh--HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcccc
Q 038200 176 FDIMP------------------ERNVV--SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN-DKTMASVLTACGRSAR 234 (523)
Q Consensus 176 ~~~~~------------------~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 234 (523)
+.... .|... ++..+...|...|++++|++++++.++. .|+ ...|..-.+.+-..|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 44321 13332 4466678889999999999999999996 455 6688889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----------HHH--HHHHHHHHhcCChH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----------VCW--NAMILGHCIHGKPE 302 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~ 302 (523)
+.+|.+.++....... .|..+-+..+..+.++|++++|.+++.....++. ..| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999864 3788888889999999999999999988866441 122 34567899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCCC----------HHHHHHHHHHHhhcC---c----HHHHHHHHHHhhHhcCCCC------
Q 038200 303 EGIKLFTALVNGTVAGGSISPD----------EITFIGVICACVRAE---L----LTEGRKYFRQMIDFYKIKP------ 359 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~----------~~~~~~ll~~~~~~~---~----~~~a~~~~~~~~~~~~~~~------ 359 (523)
.|++-|....+.-..-..-+-| ..+|..++...-+.. . ...|.++|-.+.+......
T Consensus 323 ~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~ 402 (517)
T PF12569_consen 323 LALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEA 402 (517)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 9988776654421000001112 223333333221111 1 2334455554444210000
Q ss_pred -----ChHHHHHHHHHH---HcCCChHHHHHHHHh-----------CC-CCCCCCCchHHHHHHHHHHHHhc-CCHHHHH
Q 038200 360 -----NFAHYWCMANLY---AGAELTEEAEEILRK-----------MP-EDNDNMSFESIMWVSLLSLCRFQ-GAVAMVE 418 (523)
Q Consensus 360 -----~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~~-~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~ 418 (523)
+..-...+..-. .+...-+++...-.+ .. .......+|+. ...+... .-.++|.
T Consensus 403 ~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~ 477 (517)
T PF12569_consen 403 DNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAM 477 (517)
T ss_pred ccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHH
Confidence 000001111100 111111111111100 00 00011122221 1122233 3478999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++++.+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999998887653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-07 Score=87.98 Aligned_cols=408 Identities=10% Similarity=0.074 Sum_probs=221.5
Q ss_pred HHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--HccCC
Q 038200 28 LKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC--AKTGC 102 (523)
Q Consensus 28 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~ 102 (523)
++.+...|++++|.+...++. +.+...+.+-+-++.+.+.|++|+.+.+.-... ..+..-+ +=.+| .+.+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~--fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFF--FEKAYCEYRLNK 94 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhh--HHHHHHHHHccc
Confidence 456667778888888777664 245556666677778888888888554432211 1111111 23333 36777
Q ss_pred chHHHHHHHHHHHhCCCC-CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhcCC
Q 038200 103 VERGGMCHGLALKNGVDF-ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHV-RSGDMSAAHELFDIMP 180 (523)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 180 (523)
.++|+..++ |..+ +..+...-...+-+.|++++|..+|+.+.+.+...+..-+.+-+ ..+-.-.+. +.+..+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~ 168 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVP 168 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhcc
Confidence 888877776 2232 23355555666777888888888888886554444443333211 111111111 233333
Q ss_pred CCChhHHH---HHHHHHHhcCCchHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHhccccHHHHHHHHH
Q 038200 181 ERNVVSWN---IMISGYSKSGNPGCSLKLFREMMKSG-------FRG------NDK-TMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 181 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
.....+|. .....+...|++.+|++++....+.+ -.- ... .-..+.-++...|+.++|..+|.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 32122222 22334455666666666666552211 000 000 11122333455666666666666
Q ss_pred HHHHcCCCCch----HHHHHHhhhhhh---------------------------------------------cCChHHHH
Q 038200 244 YTVRTSLKPNI----ILDTALIDLYSK---------------------------------------------CQKVEVAQ 274 (523)
Q Consensus 244 ~~~~~~~~~~~----~~~~~l~~~~~~---------------------------------------------~~~~~~a~ 274 (523)
..++.... |. ...|.|+.+-.. .+..+.+.
T Consensus 249 ~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 249 DIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 66665422 22 112222211111 11222222
Q ss_pred HHHHhcCCCC-hHHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 275 RVFDSMADRN-LVCWNAMILGHC--IHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 275 ~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
++........ ...+..++.... +.....++.+++....+.. |+. ......+......|+++.|.+++.
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~-------p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH-------PEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC-------CchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2222222211 223333333322 2234667777777776643 443 455556677888999999999999
Q ss_pred --------HhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC----CCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 350 --------QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED----NDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 350 --------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.+.+. +..| .+...++..+.+.++.+.|..++.+.+.. ..+-..-..++.-+...-.+.|+.++|
T Consensus 401 ~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 55443 4444 55566778888877766666555544311 001111123444444455677999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
...++++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999886 45666665443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.7e-09 Score=94.76 Aligned_cols=232 Identities=11% Similarity=0.015 Sum_probs=151.0
Q ss_pred CCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 198 GNPGCSLKLFREMMKSG-FRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
+..+.++..+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666676666532 1222 3456677777888888888888888888864 335778888888888888888888
Q ss_pred HHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 275 RVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 275 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
..|++..+ | +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-------PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888754 3 45678888888888999999999999988843 65432222222344567899999999776
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCCChH--HHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAELTE--EAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
.. ...|+... ..+... ..|+.. ++.+.+.+..+......| ....|..+...+...|++++|...|+++.+.+
T Consensus 192 ~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YE--KLDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hh--hCCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55 33333222 223333 344443 333333333221111122 24578888888999999999999999999998
Q ss_pred CCC-hhhHHHHHHHH
Q 038200 429 PQD-FSRYQFLLNVY 442 (523)
Q Consensus 429 p~~-~~~~~~l~~~~ 442 (523)
|.+ ++.-..++...
T Consensus 267 ~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 267 VYNFVEHRYALLELA 281 (296)
T ss_pred CchHHHHHHHHHHHH
Confidence 754 33333344433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.4e-08 Score=91.70 Aligned_cols=435 Identities=9% Similarity=-0.022 Sum_probs=204.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.-+..++++++|++...++...+ +-|...+..-+-++.+.+.+++|+.+.+.-... ..+...+---.-+.-+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 445566777777777777777654 444555666666667777777777443322110 11111111122233356667
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
++|+..++.....|..+...-...+-+.|++++|..+|+.+.+.+...+...+.+-+..- ..+... +.+......|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--~a~l~~-~~~q~v~~v~- 171 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--AAALQV-QLLQSVPEVP- 171 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH--HHhhhH-HHHHhccCCC-
Confidence 777776664443343344444455566666666666666665544333333322211100 000000 0122222222
Q ss_pred HHHHHHHHH---HHhccccHHHHHHHHHHHHHcCC-------CCch-------HHHHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 219 DKTMASVLT---ACGRSARFNEGRSVHGYTVRTSL-------KPNI-------ILDTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 219 ~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
..+|..+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+-++|..+|..+.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 223333322 23456666666666666522110 0000 111223333444555566665555554
Q ss_pred CC---ChHHHHHHHH---HHHhcCChH--HHHHHHHHHHhCCCCCCC-----cCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 282 DR---NLVCWNAMIL---GHCIHGKPE--EGIKLFTALVNGTVAGGS-----ISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 282 ~~---~~~~~~~li~---~~~~~g~~~--~a~~~~~~m~~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
+. |......... +.....++- .++..++........... -.-.....+..+-. ...+..+.+.++.
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVRELS 330 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Confidence 32 2222111111 011111110 111111111100000000 00000111111111 1123333333333
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHH--cCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHH--
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYA--GAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAK-- 422 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~-- 422 (523)
.... +..|.. .+..++.... +......|.+++....+. .|. ..+....+......|+++.|.+++.
T Consensus 331 a~lp---~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~----~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 331 ASLP---GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADG----HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HhCC---ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhcc----CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3332 223332 2333333322 223567788888877753 333 3444555566788999999999999
Q ss_pred ------HHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCcee-EEEeCCeEEEEecCCCCchHHHHHH
Q 038200 423 ------SFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCR-LVDLKEVVEKLKVGHFWRGGMKEEV 495 (523)
Q Consensus 423 ------~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 495 (523)
.+.+..- .|.+...+...|.+.++.+-|..++.+..+.-....++.. ...+-.....|-.+.++.+++...+
T Consensus 403 ~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 403 LESWKSSILEAKH-LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 3333332 5678888888899999888888888877553222222210 0111122233434447899999999
Q ss_pred HHHHhcccCCccccc
Q 038200 496 NKMMECRQSRSLATV 510 (523)
Q Consensus 496 ~~~~~~~~~~~~~~~ 510 (523)
+++++.+|.+...+.
T Consensus 482 eel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLV 496 (652)
T ss_pred HHHHHhCCchHHHHH
Confidence 999999999887665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-09 Score=100.95 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=127.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC-------C----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-----CC-CCCH-H
Q 038200 159 IVSGHVRSGDMSAAHELFDIMPE-------R----NVVSWNIMISGYSKSGNPGCSLKLFREMMKS-----GF-RGND-K 220 (523)
Q Consensus 159 ll~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~-~ 220 (523)
+...|...+++++|..+|+++.. + -..+++.|..+|.+.|++++|..+++...+- |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 44455666666666666666542 1 2456788888899999999888887766432 21 1222 2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHc---CCCC----chHHHHHHhhhhhhcCChHHHHHHHHhcCCC--------C-
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRT---SLKP----NIILDTALIDLYSKCQKVEVAQRVFDSMADR--------N- 284 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~- 284 (523)
.++.+...|...+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++|+++... +
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 3566677788888999998888866553 1111 2467888888888889988888888877431 1
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 285 --LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 285 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
-..++.|...|.+.+++.+|.++|.+...-...-+.-.|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2456777888888888888888877654321000012233 3567777777777777777777766655
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-07 Score=86.16 Aligned_cols=428 Identities=14% Similarity=0.101 Sum_probs=278.6
Q ss_pred hhHHHHHHHHhhccCCchhHHHHhccCC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHH
Q 038200 21 SFWTINLLKHSADFGSPDYTVLVFKCIN-----NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFG 95 (523)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 95 (523)
|..+-..+..+.++|++..-+++|+... ......|...+......+-++.++.+|++.++. .|.. -.-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHHH--HHHHHH
Confidence 4455555666677888888888887643 234557888888888888899999999998863 3443 677788
Q ss_pred HHHccCCchHHHHHHHHHHHhC------CCCCchHHHHHHHHHHccCCh---HHHHHHHhhcCCC--C--cchHHHHHHH
Q 038200 96 SCAKTGCVERGGMCHGLALKNG------VDFELPVMNSLINMYGCFGAM---DCARNMFVQMSPR--D--LISWNSIVSG 162 (523)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~ll~~ 162 (523)
.++..+++++|.+.+...+... -+.+...|..+.+...+.-+. -....+++.+... | ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8888999999988888775421 133556677766666654332 2344555665532 3 3579999999
Q ss_pred HHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhc----------------CC------chHHHHHHHHHHHCC----
Q 038200 163 HVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKS----------------GN------PGCSLKLFREMMKSG---- 214 (523)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~----------------~~------~~~a~~~~~~m~~~~---- 214 (523)
|.+.|.+++|..+|++... ..+.-|+.+.++|++- ++ ++-.+.-|+.+...+
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999999988765 2333344444444321 11 222333444443332
Q ss_pred -------CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC------chHHHHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 215 -------FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP------NIILDTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 215 -------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
-+.+..+|..-.. ...|+..+....|.++++. +.| -...|..+...|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 0112223332222 2346677777888888775 333 23568889999999999999999999987
Q ss_pred CCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CCcCCCHH------HHHHHHHHHhhcCcHH
Q 038200 282 DRNL-------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG------GSISPDEI------TFIGVICACVRAELLT 342 (523)
Q Consensus 282 ~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------~~~~p~~~------~~~~ll~~~~~~~~~~ 342 (523)
+-+- .+|..-...=.++.+++.|+.+.++.......+ ++.++... .|...+..-...|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7332 356666666678889999999998876643110 11122222 2334444445567888
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-ch-HHHHHHHHHHHHh-c--CCHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FE-SIMWVSLLSLCRF-Q--GAVAMV 417 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~-~--g~~~~a 417 (523)
....+|+++.+. .+. ++.........+-...-++++.+++++-+.. ++ |+ ..+|+..+.-+.+ - ...+.|
T Consensus 495 stk~vYdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L---Fk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 495 STKAVYDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL---FKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred HHHHHHHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc---CCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 888999999885 332 3344334445566777889999999998753 22 33 4677777765433 2 358999
Q ss_pred HHHHHHHhhcCCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 418 ERLAKSFVDMDPQD-F-SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 418 ~~~~~~~~~~~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..+|+++++.-|+. . ..|...+..=.+-|.-..|+.++++...
T Consensus 570 RdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 570 RDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999977742 2 2344444444556888889999887643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-07 Score=83.40 Aligned_cols=282 Identities=11% Similarity=0.035 Sum_probs=204.8
Q ss_pred HhcCCHHHHHHHHhcCCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHH
Q 038200 164 VRSGDMSAAHELFDIMPE-----RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNE 237 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~ 237 (523)
+-.++...|.+++-.+.. .|+.....+...+...|+.++|...|++.+.. .|+.. ......-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 344555555555544332 47788889999999999999999999988764 34332 22222233467788888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
...+...+.... ..+...|-.-........+++.|+.+-++.... +...+-.-...+...|+.++|.-.|+..+..
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 777777666542 123333333344445567899999998887663 4445555556788899999999999999884
Q ss_pred CCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH-HHHH-cCCChHHHHHHHHhCCCCCC
Q 038200 315 TVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA-NLYA-GAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 315 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~ 392 (523)
. +-+...|..|+.+|...|++.+|...-+.... -++.+..+...+. ..+. ...--++|.+++++...
T Consensus 364 a------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 364 A------PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred c------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 2 34678999999999999999999988887776 4555666665552 3332 23344889999999885
Q ss_pred CCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 393 NMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 393 ~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.|+ ....+.+...|...|..+.+..++++.+...| |...++.|+..+...+.+.+|.+.|....+.
T Consensus 433 -~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 433 -INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred -cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4665 44556677789999999999999999999888 5568999999999999999999999987543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.6e-08 Score=94.75 Aligned_cols=291 Identities=13% Similarity=0.048 Sum_probs=194.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhc-----
Q 038200 161 SGHVRSGDMSAAHELFDIMPE--RNV-VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTM-ASVLTACGR----- 231 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~----- 231 (523)
..+...|++++|++.++.-.. .|. .........+.+.|+.++|..+|..+++.+ |+...| ..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345567888888888876554 343 345566778888999999999999998875 555544 444444421
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH-HHHHHHHhcCCCCh-HHHHHHHHHHHhcCChHHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE-VAQRVFDSMADRNL-VCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
..+.+...++|+.+...- |.......+.-.+.....+. .+..++..+...++ .+++.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 235677778888776653 33333322322223222333 33444444444444 566666666665555555556666
Q ss_pred HHHhCCCCCC---------CcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChH
Q 038200 310 ALVNGTVAGG---------SISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE 378 (523)
Q Consensus 310 ~m~~~~~~~~---------~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 378 (523)
.........+ .-+|.. .++..+...|...|++++|++++++..+. .+..+..|..-.+.|-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHH
Confidence 5543311100 123443 35566677888999999999999999983 3334888999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CC-C------hhhHHHHHHHHHhcCChh
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--PQ-D------FSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~-~------~~~~~~l~~~~~~~g~~~ 449 (523)
+|.+.++..... -..|..+-+.....+.+.|++++|...+..+...+ |. + .......+.+|.+.|++.
T Consensus 246 ~Aa~~~~~Ar~L---D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 246 EAAEAMDEAREL---DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHhC---ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999864 24566776777778899999999999999987754 22 1 112345688999999999
Q ss_pred HHHHHHHHHHh
Q 038200 450 DVARVRELMKK 460 (523)
Q Consensus 450 ~A~~~~~~m~~ 460 (523)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-09 Score=87.60 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
+...+..+|...|+...|..-+++.++.. |+ ..++..+...|.+.|..+.|.+.|++..+ --+-+..+.|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLN 107 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-------PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhh
Confidence 34556667777888888888888877743 44 45777777777788888888888887776 2333566677
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.....+|..|++++|...|++..... ...--..+|..+..+..+.|+.+.|...+++.++.+|+.+.....+.......
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 77777778888888888888777421 12222456666666667778888888888888888888777788888888888
Q ss_pred CChhHHHHHHHHHHhCCC
Q 038200 446 GQWEDVARVRELMKKRRM 463 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~ 463 (523)
|++..|..++++....+.
T Consensus 187 ~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 187 GDYAPARLYLERYQQRGG 204 (250)
T ss_pred ccchHHHHHHHHHHhccc
Confidence 888888888877766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-09 Score=96.96 Aligned_cols=216 Identities=13% Similarity=0.107 Sum_probs=156.7
Q ss_pred ccccHHHHHHHHHHHHHcC-CCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHH
Q 038200 231 RSARFNEGRSVHGYTVRTS-LKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 304 (523)
..+..+.+..-+.+++... ..| ....|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777777777542 222 245678888899999999999999998854 3568999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 305 IKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
...|++..+. .|+ ..++..+..++...|++++|.+.|++..+. .|+..........+...++.++|.+.
T Consensus 118 ~~~~~~Al~l-------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 118 YEAFDSVLEL-------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 9999999984 465 667888888899999999999999999874 34332222222334567889999999
Q ss_pred HHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 384 LRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV-------DMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+++.... ..|+...+ .+ .....|+...+ ..++.+. ++.|+.+.+|..++.++.+.|++++|...|+
T Consensus 188 l~~~~~~---~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 188 LKQRYEK---LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHhh---CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9775532 23332222 22 22334554333 2333333 4556677899999999999999999999999
Q ss_pred HHHhCCC
Q 038200 457 LMKKRRM 463 (523)
Q Consensus 457 ~m~~~~~ 463 (523)
+..+.++
T Consensus 261 ~Al~~~~ 267 (296)
T PRK11189 261 LALANNV 267 (296)
T ss_pred HHHHhCC
Confidence 9977553
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-07 Score=80.24 Aligned_cols=280 Identities=12% Similarity=0.082 Sum_probs=143.3
Q ss_pred cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
.+|+..+..++++.+. .+..+.+.......+.|+++.|.+-|+...+-+---....|+..+ +..+.++.+.|.+...+
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHH
Confidence 3444444455554442 333444444444444555555555555444432222223343332 23344445555555555
Q ss_pred HHHcCCCC-------------c---------------hHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CChHHHHHH
Q 038200 245 TVRTSLKP-------------N---------------IILDTALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWNAM 291 (523)
Q Consensus 245 ~~~~~~~~-------------~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l 291 (523)
++++|+.. | +..+|.-...+.+.++++.|.+.+-.|+. .|++|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 44443211 0 12233334455678999999999999976 366776655
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC-CChHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYWCMANL 370 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~ 370 (523)
.-.- ..+++.+..+-+.-+.... +-...||..++-.||+..-++.|-.++-+-... ... .+...|+.|=..
T Consensus 284 Al~n-~~~~p~~g~~KLqFLL~~n------PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaL 355 (459)
T KOG4340|consen 284 ALMN-MDARPTEGFEKLQFLLQQN------PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDAL 355 (459)
T ss_pred HHhc-ccCCccccHHHHHHHHhcC------CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHH
Confidence 4332 2344555555555555543 234569999999999999999998888765432 111 244555533333
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
-...-..++|++-+..+... ..-.......-+.--....+ ...+.+-++...++-- .+...-++.|.+..+
T Consensus 356 It~qT~pEea~KKL~~La~~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLAGM---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLED 429 (459)
T ss_pred HhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccc
Confidence 33445677777666555421 00000011111111112222 2222333333333211 145556677888899
Q ss_pred hhHHHHHHHHHHh
Q 038200 448 WEDVARVRELMKK 460 (523)
Q Consensus 448 ~~~A~~~~~~m~~ 460 (523)
+.-+.++|..-.+
T Consensus 430 y~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 430 YPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHh
Confidence 9999999886543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-08 Score=81.73 Aligned_cols=202 Identities=11% Similarity=0.109 Sum_probs=145.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHh
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCI 297 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 297 (523)
+...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++... .+-.+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34455666777777777777777777764 22456777777777778888888777777643 345667777777888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
.|++++|...|++..... .-| ...+|..+.-+..+.|+.+.|..+|++..+. .+-.+.....+.....+.|+
T Consensus 116 qg~~~eA~q~F~~Al~~P-----~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 116 QGRPEEAMQQFERALADP-----AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CCChHHHHHHHHHHHhCC-----CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhccc
Confidence 888888888888887754 222 3457777777778888888888888888773 33345666777888888888
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
+..|...++..... ..+....+...+..-...|+.+.+.++-.++...-|.++.
T Consensus 189 y~~Ar~~~~~~~~~---~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 189 YAPARLYLERYQQR---GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred chHHHHHHHHHHhc---ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888888887743 3466666666677777788888888888887777776543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-08 Score=89.22 Aligned_cols=400 Identities=10% Similarity=0.029 Sum_probs=201.7
Q ss_pred HhhccCCchhHHHHhccC---CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-ccHHHHHHHHHccCCchH
Q 038200 30 HSADFGSPDYTVLVFKCI---NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS-YTFVSLFGSCAKTGCVER 105 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 105 (523)
.....|+++.|+.+|-+. .++|.+.|+.=..+|+..|++++|++=-.+-++. .|+- -.|+....++...|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 445679999999999764 3578888998999999999999998876666653 5664 478999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHh------hcC-CC------CcchHHHHHHHH---------
Q 038200 106 GGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV------QMS-PR------DLISWNSIVSGH--------- 163 (523)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~-~~------~~~~~~~ll~~~--------- 163 (523)
|+..|..-++..+. +...++.|..++... . .+.+.|. .+. .| ....|..++..+
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999998887533 667778888777211 1 1111111 000 00 111222222221
Q ss_pred -HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCCch----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccccHH
Q 038200 164 -VRSGDMSAAHELFDIMPERNVVSWNIMISGYS-KSGNPG----CSLKLFREMMK-SGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 164 -~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~-~~~~~~----~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
.....+..+.-.+.....+ .+...-.... ....+. .......++.+ ....--..-...+.++..+..+++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred ccccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111111111000 0000000000 000000 00000000000 000001122344555566666667
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh----------HHHHHHHHHHHhcCChHHHHH
Q 038200 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL----------VCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~a~~ 306 (523)
.+.+.+....... .++.-++....+|...|.+..+........+.+- .....+..+|.+.++++.++.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 7777776666654 3555556666666666666666655555433211 112223345566667777777
Q ss_pred HHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-HHHHHHHHHHHcCCChHHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
.|.+..... ..|+..+ +....+++....+...- +.|.. .-...-...+.+.|++..|+..|.
T Consensus 320 ~~~kaLte~-----Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 320 YYQKALTEH-----RTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHhhhh-----cCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 777766654 3333221 11222333332222221 12221 111111344455566666666666
Q ss_pred hCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+++.. .+-|...|.....+|.+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|++-.+
T Consensus 383 eAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 383 EAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 2334555555555556666666666666666666665555555555555556666666666555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-09 Score=94.19 Aligned_cols=252 Identities=13% Similarity=0.050 Sum_probs=151.2
Q ss_pred HHHHhcCCHHHHHHHHhcCCC--C--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPE--R--NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
+-+.-.|++..++.-.+ ... + +......+.+++...|+++.++ .+.... -.|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33455688888875554 211 1 2334455667788888766544 333333 2666666666666555544555
Q ss_pred HHHHHHHHHHHcCCC-CchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 237 EGRSVHGYTVRTSLK-PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
.+..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 555444443333222 23333333445666778888888877765 45666667778888888888888888888763
Q ss_pred CCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 316 VAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 316 ~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
..|. +...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++..+.
T Consensus 161 ------~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~- 230 (290)
T PF04733_consen 161 ------DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK- 230 (290)
T ss_dssp ------SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred ------CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 2443 34444444332 2357788888888776 45667777777888888888888888888877654
Q ss_pred CCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCCh
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAV-AMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 432 (523)
.+-+..++..++......|+. +.+.+++.++....|+++
T Consensus 231 --~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 231 --DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred --ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 233555666666666666766 667777787777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=90.93 Aligned_cols=247 Identities=14% Similarity=0.052 Sum_probs=163.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886555 222221223445567778888888876543 3333333 566666666666555545667
Q ss_pred HHHHHHHhcCC-C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHH
Q 038200 272 VAQRVFDSMAD-R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346 (523)
Q Consensus 272 ~a~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (523)
.+..-+++... + +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHH
Confidence 77777765433 2 2222222334566789999998887532 345566677888999999999999
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHH----HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANL----YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
.++.|.+ +..|. +...|..+ +.-.+.+.+|.-+|+++.+. ..++..+.+.+..++...|++++|+.+++
T Consensus 153 ~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 153 ELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999876 33342 33334433 33345789999999998754 56778888888888999999999999999
Q ss_pred HHhhcCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 038200 423 SFVDMDPQDFSRYQFLLNVYAVAGQW-EDVARVRELMKKR 461 (523)
Q Consensus 423 ~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 461 (523)
++.+.+|.++.++..++.+....|+. +.+.+++.++++.
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999988 5577788887664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-07 Score=90.06 Aligned_cols=414 Identities=11% Similarity=-0.009 Sum_probs=241.6
Q ss_pred HHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC--c--
Q 038200 78 MIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD--L-- 153 (523)
Q Consensus 78 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-- 153 (523)
+....+..|...|..+.-+....|++..+-+.|++.....+. ....|+.+...|..+|.-..|..+++.-..+. +
T Consensus 314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 334446677788888888888888888888888887765443 66778888888888888888888887765322 2
Q ss_pred -chHHHHHHHHH-hcCCHHHHHHHHhcCCC--------CChhHHHHHHHHHHhc-----------CCchHHHHHHHHHHH
Q 038200 154 -ISWNSIVSGHV-RSGDMSAAHELFDIMPE--------RNVVSWNIMISGYSKS-----------GNPGCSLKLFREMMK 212 (523)
Q Consensus 154 -~~~~~ll~~~~-~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~ 212 (523)
..+-..-..|. +.+.+++++..-.++.. -....|..+.-+|... ....++++.+++.++
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 22222222232 33555555444444332 2233444444444321 123466777777776
Q ss_pred CCC-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHH
Q 038200 213 SGF-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCW 288 (523)
Q Consensus 213 ~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 288 (523)
.+. .|+...| +.--|+-.++++.|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+...+. |....
T Consensus 473 ~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred cCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 542 2333333 33346667788888888888888765667788888888888888888888887765431 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-----------------C-CCCc---CC--CHHHHHHHHHHHhhcCcHHHHH
Q 038200 289 NAMILGHCIHGKPEEGIKLFTALVNGTV-----------------A-GGSI---SP--DEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 289 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------------~-~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
..-+..-..-++.++++.....+...-. . +.+. .| ...++..+..-....+....-.
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 1111111123444444333222221100 0 0000 11 1122222222111110000000
Q ss_pred HHHHHhhHhcCCCCCh--------HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 346 KYFRQMIDFYKIKPNF--------AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.. +.. ..+.|++ ..|......+.+.+..++|...+.+.... .+-....|......+...|+.++|
T Consensus 631 ~~---Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~---~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 631 LK---LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI---DPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cc---cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc---chhhHHHHHHhhHHHHHHHhhHHH
Confidence 00 111 1222322 34556677788999999999888888743 233455666666678888999999
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH--HHHHHHhCCCccCCce--eEEEeCCeEEEEecCCCCchHHHH
Q 038200 418 ERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR--VRELMKKRRMGRMPGC--RLVDLKEVVEKLKVGHFWRGGMKE 493 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 493 (523)
.+.|..+..++|+++.+...++.++.+.|+..-|.. ++..+.+.+ |.+ -|..+ +......++.+++.+
T Consensus 704 ~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d----p~n~eaW~~L----G~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 704 KEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD----PLNHEAWYYL----GEVFKKLGDSKQAAE 775 (799)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC----CCCHHHHHHH----HHHHHHccchHHHHH
Confidence 999999999999999999999999999998887777 888886654 322 12211 222233355666777
Q ss_pred HHHHHHhcccCCcccc
Q 038200 494 EVNKMMECRQSRSLAT 509 (523)
Q Consensus 494 ~l~~~~~~~~~~~~~~ 509 (523)
.....++++++++.-.
T Consensus 776 cf~aa~qLe~S~PV~p 791 (799)
T KOG4162|consen 776 CFQAALQLEESNPVLP 791 (799)
T ss_pred HHHHHHhhccCCCccc
Confidence 7777777766665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-07 Score=86.06 Aligned_cols=235 Identities=11% Similarity=0.034 Sum_probs=148.0
Q ss_pred CChhHHHHHHH--HhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-C-------C-CCCc
Q 038200 19 NNSFWTINLLK--HSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-G-------F-MPNS 87 (523)
Q Consensus 19 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~-~p~~ 87 (523)
=|+.+-.++++ .|.--|+.+.|.+..+.+++ ...|..|.+.|.+.++.+-|.-.+-.|... | . .|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45666666664 67788999999888776654 467999999999999999888877777531 1 1 222
Q ss_pred ccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-CcchHHHHHHHHHhc
Q 038200 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-DLISWNSIVSGHVRS 166 (523)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~ 166 (523)
.+=..+.-.....|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-..- -..||......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 333333334457799999999998887642 3444567788999998876654321 224566666666677
Q ss_pred CCHHHHHHHHhcCCCC-----------------------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 167 GDMSAAHELFDIMPER-----------------------NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~-----------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
+|.+.|++.|++...+ |...|.-.....-..|+.+.|+.+|....+ |.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888888877532 223333333334445555555555544332 33
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhc
Q 038200 224 SVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSM 280 (523)
Q Consensus 224 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 280 (523)
.+++..|-.|+.++|.++-++ . -|......|...|...|++.+|..+|.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555556666666555432 1 24455555666666667777776666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-07 Score=88.43 Aligned_cols=443 Identities=10% Similarity=0.007 Sum_probs=273.4
Q ss_pred HhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHH
Q 038200 4 LLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIK 80 (523)
Q Consensus 4 ~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 80 (523)
...+|..+....++|.-...++.|...|....+...|.+.|++.- ..+..++......|++..+++.|..+.-..-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 346677777777775667789999999998889999999998754 46777888999999999999999998433322
Q ss_pred CC-CCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchH-H-
Q 038200 81 NG-FMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISW-N- 157 (523)
Q Consensus 81 ~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~- 157 (523)
.. ...-...|....-.+...++..++..-|+...+..+. |...|..+..+|.++|.+..|.++|.+...-++..+ .
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 21 0001112333334456778889999999999888766 888999999999999999999999988764333222 1
Q ss_pred -HHHHHHHhcCCHHHHHHHHhcCCC----------CChhHHHHHHHHHHhcCCchHHHHHHHHH-------HHCCCCCCH
Q 038200 158 -SIVSGHVRSGDMSAAHELFDIMPE----------RNVVSWNIMISGYSKSGNPGCSLKLFREM-------MKSGFRGND 219 (523)
Q Consensus 158 -~ll~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~~~~~p~~ 219 (523)
-..-..+..|.+.+|...+..+.. .-..++-.+...+...|-..+|.++++.- .......+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 222334567888888888877653 11122222222222233223333332222 111111111
Q ss_pred HHHHHHHHH-----------------------HhccccH---H---HHHHHHHHHHHcCCCCchHHHHHHhhhhhh----
Q 038200 220 KTMASVLTA-----------------------CGRSARF---N---EGRSVHGYTVRTSLKPNIILDTALIDLYSK---- 266 (523)
Q Consensus 220 ~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 266 (523)
..|-.+..+ ....+.. + -+.+.+-.-.+ ...+...|..|+..|.+
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 112111111 1111111 1 00011110011 11112233333332222
Q ss_pred cC----ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC
Q 038200 267 CQ----KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE 339 (523)
Q Consensus 267 ~~----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 339 (523)
++ +...|+..+.+..+ .+..+|+.|.-. ...|++.-+...|-+-.... +.+..+|..+...|.+..
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se------p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE------PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc------ccchhheeccceeEEecc
Confidence 11 23456666666543 567788877665 56678888877777666643 445678888888889999
Q ss_pred cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHh--CCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRK--MPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
+++.|...|...+. -.+.+...|-.........|+.-++..+|.. ....+.|-.++..-|.+........|+.++-
T Consensus 865 d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999886 3344566676666666678888888888876 3333445566666666555556666665554
Q ss_pred HHH----------HHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 418 ERL----------AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 418 ~~~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
... +++...-.|++..+|...+....+.+.+.+|..+..+.
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 443 34444567888889999999999999998888777665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-06 Score=82.03 Aligned_cols=262 Identities=15% Similarity=0.155 Sum_probs=154.4
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChh--HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPERNVV--SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
+-.....+.+|+.+++.+....+. -|..+...|+..|+++.|.++|.+. ..++-.+..|.+.|+|+.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 344556677777777766654332 3566667777777777777777542 12344566777777777777
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-+.|..+..+++..+-....
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~---- 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH---- 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh----
Confidence 6654432 33344556666666666777777777777777776643 566777777777777766432211
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-H
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-S 398 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 398 (523)
-..|-..+..-+...|+...|...|-+..+ |.+-+++|..++.+++|.++-+.-- +.+.... .
T Consensus 881 ----l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakteg--g~n~~k~v~ 944 (1636)
T KOG3616|consen 881 ----LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEG--GANAEKHVA 944 (1636)
T ss_pred ----hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccc--cccHHHHHH
Confidence 123555566667777888888777665543 4556667777777777766654322 1000000 0
Q ss_pred HHH-------------------HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 399 IMW-------------------VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 399 ~~~-------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
..| ..-+...+..+.++-|..+.+...+-. -+.++..++..+...|++++|-+-+-+..
T Consensus 945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 111 111112233344555555544443322 34567778888888999999877666555
Q ss_pred hC
Q 038200 460 KR 461 (523)
Q Consensus 460 ~~ 461 (523)
+.
T Consensus 1023 kl 1024 (1636)
T KOG3616|consen 1023 KL 1024 (1636)
T ss_pred hc
Confidence 44
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-06 Score=77.39 Aligned_cols=383 Identities=9% Similarity=0.018 Sum_probs=246.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
+.-+...+++..|+.+++.-...+-.-...+-.-+..++...|++++|...+..+.... .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 77788899999999999887754422222333344555579999999999999988754 56777777788888888999
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 139 DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 139 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
.+|..+-.+..+ ++..-..+.+.-.+.++-++-..+-+.+.. ...---+|.+.....-++++|+++|.+.... .|+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 999988776542 222333444445566776666655555543 2233334555555556799999999999875 355
Q ss_pred HHHHHH-HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc--CChHH--HHHHHHhcC----------C-
Q 038200 219 DKTMAS-VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC--QKVEV--AQRVFDSMA----------D- 282 (523)
Q Consensus 219 ~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~--a~~~~~~~~----------~- 282 (523)
-...+. +.-+|.+..-++-+.+++.-..+. ++.++..-|.......+. |+..+ -.++-+... +
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 555543 344667888888888888877665 233344444333333222 22111 111111111 0
Q ss_pred ---------------C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHH-h----h
Q 038200 283 ---------------R-----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC-V----R 337 (523)
Q Consensus 283 ---------------~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~-~----~ 337 (523)
| =+.....++--|.+.+++.+|..+.+++.- ..|-......+..+- . .
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-------ttP~EyilKgvv~aalGQe~gS 335 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP-------TTPYEYILKGVVFAALGQETGS 335 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC-------CChHHHHHHHHHHHHhhhhcCc
Confidence 1 122344566678899999999998887543 345554444444322 1 1
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
.....-|.+.|+..-+. +...| ..-..++...+.-..++++.+..++.+..- +..|......+..+....|++.+
T Consensus 336 reHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY---F~NdD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY---FTNDDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred HHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcchhhhHHHHHHHHhcChHH
Confidence 22355677777766543 33333 233445666667777899999999888743 45555566678889999999999
Q ss_pred HHHHHHHHhhcCCCChhhHH-HHHHHHHhcCChhHHHHHHHHH
Q 038200 417 VERLAKSFVDMDPQDFSRYQ-FLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 458 (523)
|+++|-++...+-.+..+|. .|+++|.+.++.+-|++++-++
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999988876644444554 6788999999999998876654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-06 Score=81.86 Aligned_cols=262 Identities=8% Similarity=-0.061 Sum_probs=144.9
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhh
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTAC----GRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSK 266 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 266 (523)
..+...|++++|.+.+++..+.. +.+...+.. ...+ ...+....+.+.+.. .....| .......+...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 34566777778877777776642 223333331 1122 223444444444433 111122 23444455667777
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELL 341 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~ 341 (523)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... ..|+. ..|..+...+...|++
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~----~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD----CSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC----CCcchhHHHHHHHHHHHHHCCCH
Confidence 8888888888877654 3455667777778888888888888887776430 01222 2344666777888888
Q ss_pred HHHHHHHHHhhHhcCCCCChHHH-H--HHHHHHHcCCChHHHHHH--H-HhCCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHY-W--CMANLYAGAELTEEAEEI--L-RKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 415 (523)
++|..+++++.......+..... . .++..+...|....+.++ + ........+ ............++...|+.+
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHH
Confidence 88888888875421111222111 1 223333334433322222 1 111100000 111122224555677888888
Q ss_pred HHHHHHHHHhhcC-C--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 416 MVERLAKSFVDMD-P--------QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 416 ~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.|...++.+.... . .........+.++...|++++|.+.+.+.....
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888876522 1 134455566777889999999999988876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=92.95 Aligned_cols=226 Identities=9% Similarity=0.001 Sum_probs=174.4
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988876 34788899898888888888888888888765 35677778888899999999999
Q ss_pred HHHHHHHhCCCCCCCcCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 306 KLFTALVNGTVAGGSISP---DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
..|+.-+.......-..+ +...-.. ..+.....+....++|-.+....+..+|+.++..|.-.|.-.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887664310000000 0000000 12222333445556666665544666889999999999999999999999
Q ss_pred HHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 383 ILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 383 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+.++. ..| |..+|+.|...++...+.++|...|++++++.|.-..+...|+..|...|.|+||.+.|-+....
T Consensus 452 cf~~AL~----v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ----VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh----cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999985 455 68899999999999999999999999999999999999999999999999999999988776543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-05 Score=71.12 Aligned_cols=428 Identities=11% Similarity=0.081 Sum_probs=264.7
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN--P-GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.|..+|..|++-+..+ .+++++.+++.+.. | ....|..-|..-.++++++....+|.+.+..- .+...|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 68899999999888776 89999999998863 3 45679999999999999999999999998763 4556676666
Q ss_pred HHHHcc-CCch----HHHHHHHHHHH-hCCCC-CchHHHHHHHHH---------HccCChHHHHHHHhhcCC-C------
Q 038200 95 GSCAKT-GCVE----RGGMCHGLALK-NGVDF-ELPVMNSLINMY---------GCFGAMDCARNMFVQMSP-R------ 151 (523)
Q Consensus 95 ~~~~~~-~~~~----~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~-~------ 151 (523)
...-+. |+.. ...+.|+..+. .|..+ +-.+|+..+..+ ....+++..+++++++.. |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 655432 3332 23344554443 44433 344566666543 334467788888888863 2
Q ss_pred ---CcchHHHHHHHH-------HhcCCHHHHHHHHhcCCC---------CC------------hhHHHHHHHHHHhcCCc
Q 038200 152 ---DLISWNSIVSGH-------VRSGDMSAAHELFDIMPE---------RN------------VVSWNIMISGYSKSGNP 200 (523)
Q Consensus 152 ---~~~~~~~ll~~~-------~~~~~~~~a~~~~~~~~~---------~~------------~~~~~~li~~~~~~~~~ 200 (523)
|-..|..=|+.. -+...+-.|.++++++.. |. +..|-.+|.--...+--
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 112222222211 123445566666665531 10 12244444321111100
Q ss_pred --------hHHHHHHHHH-HHCCCCCCHHHH-HH----HHHHHhcccc-------HHHHHHHHHHHHHcCCCCchHHHHH
Q 038200 201 --------GCSLKLFREM-MKSGFRGNDKTM-AS----VLTACGRSAR-------FNEGRSVHGYTVRTSLKPNIILDTA 259 (523)
Q Consensus 201 --------~~a~~~~~~m-~~~~~~p~~~~~-~~----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (523)
....-.+++. .-.+..|+.... .. ..+.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122222 222333333211 11 1112222333 4455666666554433334445544
Q ss_pred Hhhhhhhc---CChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHH
Q 038200 260 LIDLYSKC---QKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGV 331 (523)
Q Consensus 260 l~~~~~~~---~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~l 331 (523)
+.+.-... +..+....++++... .-..+|..+|..-.+..-...|..+|.++.+.+ ..+ +....+++
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-----r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-----RTRHHVFVAAAL 408 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-----CCcchhhHHHHH
Confidence 44322111 125555666666543 234578888888888899999999999999988 566 67778888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHH
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR 409 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 409 (523)
+.-+|. ++.+.|.++|+.-.+.+| .++..-...++-+...++-..|..+|++.... ++.|+ ..+|..++..-.
T Consensus 409 mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 409 MEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHHHHH
Confidence 877764 889999999999888544 34455567788888999999999999999954 45554 579999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQD----FSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..|+...+..+-++....-|.+ ...-..++.-|.-.+.+..-..-++.|
T Consensus 484 ~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999999999988887655521 123445566677677665544444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-06 Score=83.26 Aligned_cols=191 Identities=8% Similarity=-0.029 Sum_probs=117.0
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCccc---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFC---VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFV 91 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 91 (523)
|..+..+..+...+...|+.+.+.+.+.... +++... .......+...|++++|.+.+++..+.. +.|...+.
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 5667777777777777788888766665532 222222 1222334566788889998888887752 33333333
Q ss_pred HHHHHHH----ccCCchHHHHHHHHHHHhCCCCC-chHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHH
Q 038200 92 SLFGSCA----KTGCVERGGMCHGLALKNGVDFE-LPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGH 163 (523)
Q Consensus 92 ~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~ 163 (523)
. ...+. ..+....+.+.++. .....|+ ......+..++...|++++|.+.+++.. +.+...+..+...+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~ 158 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVL 158 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 2 11222 23444455554443 1112222 2334455567778888888888888876 33455667777778
Q ss_pred HhcCCHHHHHHHHhcCCC--C---Ch--hHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 164 VRSGDMSAAHELFDIMPE--R---NV--VSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~--~---~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
...|++++|...+++... | +. ..|..+...+...|++++|..+|++...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888877654 1 21 2344667777888888888888887754
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-06 Score=82.21 Aligned_cols=220 Identities=13% Similarity=0.054 Sum_probs=114.8
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
+......|.+|+.+++.++.+.. -.--|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666665555421 2234555566666666666666665322 123445566666666666
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 273 AQRVFDSMADRN--LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 273 a~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
|.++-.+...|. ...|-+-..-+-.+|++.+|.++|-... .|+. .|..|-+.|..+..+++.++
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~---------~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---------EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---------CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 666666654442 2344444444556666666666654321 2442 34556666666666655554
Q ss_pred hhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
-... .-..|...+..-|-..|++..|.+.|-+.. -|...++.|...+-++.|-++.+. -+-.
T Consensus 876 ~h~d----~l~dt~~~f~~e~e~~g~lkaae~~flea~-----------d~kaavnmyk~s~lw~dayriakt---egg~ 937 (1636)
T KOG3616|consen 876 HHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLEAG-----------DFKAAVNMYKASELWEDAYRIAKT---EGGA 937 (1636)
T ss_pred hChh----hhhHHHHHHHHHHHhccChhHHHHHHHhhh-----------hHHHHHHHhhhhhhHHHHHHHHhc---cccc
Confidence 4321 112344455666666777777776665555 234445556666666665555332 2222
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 431 DFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
+..-....++ ++.=--+.|.+++.+
T Consensus 938 n~~k~v~flw--aksiggdaavkllnk 962 (1636)
T KOG3616|consen 938 NAEKHVAFLW--AKSIGGDAAVKLLNK 962 (1636)
T ss_pred cHHHHHHHHH--HHhhCcHHHHHHHHh
Confidence 3333333333 333233456666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5e-05 Score=76.13 Aligned_cols=261 Identities=15% Similarity=0.143 Sum_probs=145.0
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+++....+..-.|... +.++-+|++.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 345555555555555555555554433 33445555556666666666555555444443333332 34445555555
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
++.+.++++ ..|+..-...+.+-|...+.++.|.-+|. ++..|..|...+...|++..|.+.-++.
T Consensus 1181 rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA-- 1246 (1666)
T KOG0985|consen 1181 RLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA-- 1246 (1666)
T ss_pred hHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 555444433 23444444455555555555555555554 3445667777777777777777665532
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCC
Q 038200 314 GTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDN 393 (523)
Q Consensus 314 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 393 (523)
.+..||..+-.+|...+.+.-| +|-.. .+.....-..-|+.-|-..|-+++-+.+++...-
T Consensus 1247 ---------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG---- 1307 (1666)
T KOG0985|consen 1247 ---------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLG---- 1307 (1666)
T ss_pred ---------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc----
Confidence 3455777777777776665443 22221 2333455667788888889999998888887762
Q ss_pred CC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-cC-C------CChhhHHHHHHHHHhcCChhHHH
Q 038200 394 MS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVD-MD-P------QDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 394 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
.+ .....|.-+.-.|++-. .++..+.++.+.. .+ | +....|..|.-.|.+-..|+.|.
T Consensus 1308 LERAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 33 33445555555555442 4444444443332 11 1 12345666777777666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-07 Score=76.53 Aligned_cols=284 Identities=10% Similarity=0.087 Sum_probs=157.0
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhcccc
Q 038200 159 IVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS-VLTACGRSAR 234 (523)
Q Consensus 159 ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~ 234 (523)
.+..+.+..++++|++++..-.+ | +......|..+|....++..|-+.|+++... .|...-|.. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 33334444555555555544433 1 3344555555666666666666666666553 343333321 2334445555
Q ss_pred HHHHHHHHHHHHHcCCCCchHH--HHHHhhhhhhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIIL--DTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
+..|..+...|... ++... ...-.......+++..+..++++... .+..+.+.......+.|+++.|++-|+..
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 66666665555432 11111 11011112334566666666666653 44444444445555666777777777666
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-------------Ch--------HHHHHHHH-
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-------------NF--------AHYWCMAN- 369 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~--------~~~~~l~~- 369 (523)
.+.+ |..| ...|+..+.. .+.++++.|+++..++.++ |++. |+ -.-+.++.
T Consensus 171 lqvs----Gyqp-llAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eA 243 (459)
T KOG4340|consen 171 LQVS----GYQP-LLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEA 243 (459)
T ss_pred Hhhc----CCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHH
Confidence 6544 1333 3345444433 3446666666666666654 4321 11 11223333
Q ss_pred ------HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 370 ------LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 370 ------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
.+.+.|+++.|.+.+-.|.-+. ....|++|...+.-. -..+++-...+-+.-+.+++|-.+++|..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRA-EEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcc-cccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3467889999999999988532 235566776655432 22345556666667777788877889999999999
Q ss_pred hcCChhHHHHHHH
Q 038200 444 VAGQWEDVARVRE 456 (523)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (523)
+..-++-|.+++-
T Consensus 322 KNeyf~lAADvLA 334 (459)
T KOG4340|consen 322 KNEYFDLAADVLA 334 (459)
T ss_pred hhHHHhHHHHHHh
Confidence 9988888887755
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-07 Score=78.60 Aligned_cols=149 Identities=8% Similarity=0.055 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~---------~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD---------PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC---------cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 3457788888776544433222 11 012235677788888888777 4566788999999999
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHH-HHhcCC--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSL-CRFQGA--VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
...|++++|...+++.... .| +...+..+..+ +...|+ .++|.++++++.+.+|+++.++..++..+...|+
T Consensus 84 ~~~g~~~~A~~a~~~Al~l----~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQL----RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 9999999999999998863 44 56677777765 467677 5999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCC
Q 038200 448 WEDVARVRELMKKRRM 463 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~ 463 (523)
+++|+..|+++.+...
T Consensus 160 ~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 160 YAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999977643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-05 Score=70.62 Aligned_cols=398 Identities=12% Similarity=0.099 Sum_probs=247.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHH
Q 038200 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128 (523)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (523)
+-|+.+|+.||+-+..+ .++++.+.++++... ++-....|..-+..-.+..+++.+..+|.+.+..- .+.+.|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45889999999987766 999999999999864 34456688889999999999999999999998764 356777776
Q ss_pred HHHHHc-cCChHHHHHHHhh----------cCCCCcchHHHHHHH---------HHhcCCHHHHHHHHhcCCC-C-----
Q 038200 129 INMYGC-FGAMDCARNMFVQ----------MSPRDLISWNSIVSG---------HVRSGDMSAAHELFDIMPE-R----- 182 (523)
Q Consensus 129 ~~~~~~-~g~~~~A~~~~~~----------~~~~~~~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~-~----- 182 (523)
++--.+ .|+...+....-+ |...+...|+..+.. +....+++...+++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 664332 3443332222111 122344556665554 4455678888888988864 2
Q ss_pred ----ChhHHHHHHHH-------HHhcCCchHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHHhcccc
Q 038200 183 ----NVVSWNIMISG-------YSKSGNPGCSLKLFREMMK--SGFRGNDK---------------TMASVLTACGRSAR 234 (523)
Q Consensus 183 ----~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~---------------~~~~ll~~~~~~~~ 234 (523)
|-..|..=|+. --+...+..|.++++++.. .|..-+.. .|..+|.- -+.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 22222222221 1133456677777777654 23211111 12222221 11111
Q ss_pred H---------HHHHHHHHHHH-HcCCCCchHHHH-----HHhhhhhhcCC-------hHHHHHHHHhcCC----CChHHH
Q 038200 235 F---------NEGRSVHGYTV-RTSLKPNIILDT-----ALIDLYSKCQK-------VEVAQRVFDSMAD----RNLVCW 288 (523)
Q Consensus 235 ~---------~~a~~~~~~~~-~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~----~~~~~~ 288 (523)
+ ....-++++.. -.+..|++.... ...+.+...|+ -+++..++++... .+...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 01111222222 123333321111 11122333333 3455555555433 233333
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHH
Q 038200 289 NAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHY 364 (523)
Q Consensus 289 ~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 364 (523)
..+.+.--. ....+.....++++.... .+.|+ .+|..++....+..-+..|..+|.++.+. +..+ .+..+
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~----~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa 405 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIE----DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVA 405 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhh----ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHH
Confidence 333322111 123566666777776643 13333 47888888888889999999999999997 6666 78888
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCC-ChhhHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM--DPQ-DFSRYQFLLNV 441 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~ 441 (523)
.+++.-|| .++.+-|.++|+--+.. +..++.-....+..+...++-..+..+|++++.. .|+ ...+|..++.-
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkk---f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKK---FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHh---cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 88888776 47889999999987754 4444555567777888899999999999999975 443 55799999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 038200 442 YAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~ 461 (523)
=..-|+...+.++-+++...
T Consensus 482 ES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 99999999999998888664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-05 Score=87.23 Aligned_cols=328 Identities=9% Similarity=-0.040 Sum_probs=212.6
Q ss_pred HHccCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC----C----C----hhHHHHHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSP----RDLISWNSIVSGHVRSGDMSAAHELFDIMPE----R----N----VVSWNIMISGYS 195 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~----~~~~~~li~~~~ 195 (523)
....|+++.+...++.+.. .+..........+...|+++++...+..... . + ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456778887788777641 2333333444455678999998888876532 1 1 111223344567
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHcCC---CC--chHHHHHHhhhhhh
Q 038200 196 KSGNPGCSLKLFREMMKSGFRGND----KTMASVLTACGRSARFNEGRSVHGYTVRTSL---KP--NIILDTALIDLYSK 266 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 266 (523)
..|++++|...+++....-...+. ...+.+...+...|+++.|...+.+.....- .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999988763111221 2345566667889999999999988775311 11 12345566778889
Q ss_pred cCChHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC--CHHHHHHHHH
Q 038200 267 CQKVEVAQRVFDSMAD-------R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP--DEITFIGVIC 333 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p--~~~~~~~ll~ 333 (523)
.|+++.|...+++... + ....+..+...+...|++++|...+.+....... ..+ ....+..+..
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~la~ 620 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN---YQPQQQLQCLAMLAK 620 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc---cCchHHHHHHHHHHH
Confidence 9999999998877532 1 1223445566677889999999999887664210 112 2334555666
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHH-----HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHY-----WCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSL 407 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 407 (523)
.....|+.+.|...++..............+ ...+..+...|+.+.|.+++........+... ....+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999998886531111111111 11224455689999999998887642211110 11123455667
Q ss_pred HHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 408 CRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+...|+.++|...++++.+.. +....++..++.+|.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888999999999999988742 1233467788999999999999999999987753
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=79.42 Aligned_cols=396 Identities=11% Similarity=0.044 Sum_probs=246.5
Q ss_pred hHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC------------CCCc------------------
Q 038200 3 QLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN------------NPGT------------------ 52 (523)
Q Consensus 3 ~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~------------------ 52 (523)
......+..+..|.. ++.++|+|...|..+++-.+ +++.+-+ ++|.
T Consensus 856 lLlp~LE~~i~eG~~--d~a~hnAlaKIyIDSNNnPE--~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~ 931 (1666)
T KOG0985|consen 856 LLLPWLESLIQEGSQ--DPATHNALAKIYIDSNNNPE--RFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN 931 (1666)
T ss_pred HHHHHHHHHHhccCc--chHHHhhhhheeecCCCChH--HhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH
Confidence 345566777777866 89999999998887665432 2222111 1111
Q ss_pred -----ccHHHHHHHHHhCCCchHHHHHH-----------HHHHHCCC--CCCcccHHHHHHHHHccCCchHHHHHHHHHH
Q 038200 53 -----FCVNAVIKAYSNSCVPDQGVVFY-----------LQMIKNGF--MPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 53 -----~~~~~ll~~~~~~~~~~~a~~~~-----------~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
..|....+.+.++.+.+-=.+++ ++..+.++ ..|+...+..+.++...+-..+-.++++++.
T Consensus 932 vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 932 VCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 11333334444455544333332 11122221 2244445556666666666666666666665
Q ss_pred HhC--CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC-----------
Q 038200 115 KNG--VDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE----------- 181 (523)
Q Consensus 115 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------- 181 (523)
-.+ +.-+...-|.|+-...+ -+...+.+..+++..-|.. .+.......+-+++|..+|++...
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~ 1087 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN 1087 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 321 11122333444433333 2334444454444321111 011122233444555555544321
Q ss_pred --------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 038200 182 --------------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVR 247 (523)
Q Consensus 182 --------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 247 (523)
.....|..+..+-.+.|...+|.+-|-+ ..|+..|..+++.+.+.|.+++-..++.-..+
T Consensus 1088 i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 2346788888888888888888776643 23667888899999999999998888877776
Q ss_pred cCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 248 TSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..-.|. +-+.|+-+|++.+++.+.++++ .-||......+..-|...|.++.|.-+|... ..
T Consensus 1162 k~~E~~--id~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------------SN 1222 (1666)
T KOG0985|consen 1162 KVREPY--IDSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------------SN 1222 (1666)
T ss_pred hhcCcc--chHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------------hh
Confidence 654444 3456888888888887766653 3467777777888888888888887777533 34
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
|..|...+...|++..|...-+++. +..+|..+-.+|...+.+.-|. |. +..+-....-...++..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~VcfaCvd~~EFrlAQ-----iC--GL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCFACVDKEEFRLAQ-----IC--GLNIIVHADELEELIEY 1288 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHHHHhchhhhhHHH-----hc--CceEEEehHhHHHHHHH
Confidence 6667777778888888876655543 5678888888887766655442 33 33344556677788999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
|...|-+++-..+++..+.++..+...|..|+-.|++-
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888888888888888764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-07 Score=92.71 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=167.5
Q ss_pred CchHHHHHHhhhhhhcCChHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMAD--------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 252 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
.+...|-..|......+++++|.+++++... .-...|.+++..-...|.-+...++|+++.+. .-
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-------cd 1528 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-------CD 1528 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-------cc
Confidence 3466777788888888999999999988754 13357888888777788888899999999884 34
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc---hHHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF---ESIM 400 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 400 (523)
....|..|...|.+.+.+++|.++|+.|.++++ -....|...+..+.+..+-+.|..++.++++. -| ....
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~----lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS----LPKQEHVEF 1602 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh----cchhhhHHH
Confidence 456788999999999999999999999999655 56788999999999999999999999998853 33 3445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
....+..-.+.|+.+++..+|+-.+...|.-...|..+++.-.+.|+.+.+..+|++....++++..
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 5555666778899999999999999999988889999999999999999999999999888775533
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-06 Score=82.59 Aligned_cols=321 Identities=13% Similarity=0.102 Sum_probs=171.1
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC------------CCcchHHHHHHHHHh
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP------------RDLISWNSIVSGHVR 165 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~ll~~~~~ 165 (523)
...|+.+.|.+-.+.+. +..+|..+.++|.+..+++-|.-.+-.|.. .+..+-..+.-.-..
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 34455565555444432 345566666666666666666665555541 011111112222234
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT 245 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 245 (523)
.|.+++|+.+|.+.+. |..|=..|...|.|++|+++-+.--. +. =..||..-..-+...++.+.|++.|++.
T Consensus 813 LgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 5666666666665543 22233445556666666655432111 11 1234444444444555555555555432
Q ss_pred ----------HHcCC---------CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHH
Q 038200 246 ----------VRTSL---------KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 246 ----------~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
+...+ ..|...|.--.......|+.+.|+.+|.... -|-+++...|-.|+.++|.+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~ 959 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAAR 959 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHH
Confidence 11110 1133444445555556777888888777654 36667777777888888877
Q ss_pred HHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc-CCC--CChHHHHHHHHHHH--cCCChHHHH
Q 038200 307 LFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY-KIK--PNFAHYWCMANLYA--GAELTEEAE 381 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~--~~g~~~~A~ 381 (523)
+-++ .-|......|.+.|...|++.+|..+|-++..-- -+. ..-..-..|..... ...+.-.|.
T Consensus 960 iA~e-----------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 960 IAEE-----------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred HHHh-----------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 7653 2355566677888888888888888887765410 000 00000111222222 223344555
Q ss_pred HHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH---------H-hhcCCC-ChhhHHHHHHHHHhcCChhH
Q 038200 382 EILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS---------F-VDMDPQ-DFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~-~~~~p~-~~~~~~~l~~~~~~~g~~~~ 450 (523)
++|++..- -+...+..|.+.|.+.+|+++.-. + ..++|. ||......++.+....++++
T Consensus 1029 rYyEe~g~----------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1029 RYYEELGG----------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHcch----------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 66666551 112223446677777777665322 1 125664 78888888888888888888
Q ss_pred HHHHHHHH
Q 038200 451 VARVRELM 458 (523)
Q Consensus 451 A~~~~~~m 458 (523)
|..++-..
T Consensus 1099 AV~lL~~a 1106 (1416)
T KOG3617|consen 1099 AVNLLCLA 1106 (1416)
T ss_pred HHHHHHHH
Confidence 88766544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-05 Score=73.96 Aligned_cols=409 Identities=10% Similarity=-0.039 Sum_probs=246.5
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (523)
.|-...-...++|+|...|+.-..+|++.|++++|.+=-.+-. +.-...|+....++.-.|++++|+.-|.+-++..
T Consensus 21 ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 21 AIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD 100 (539)
T ss_pred HHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC
Confidence 3445555667888899999999999999999999987654433 3345689999999999999999999999988764
Q ss_pred CCCCcccHHHHHHHHHccCCc---hHHHHHHHHHHHh---CCCCCchHHHHHHHHHHcc----------CChHHHHHHHh
Q 038200 83 FMPNSYTFVSLFGSCAKTGCV---ERGGMCHGLALKN---GVDFELPVMNSLINMYGCF----------GAMDCARNMFV 146 (523)
Q Consensus 83 ~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~ 146 (523)
+.|...++.+..+....... -.--.++..+... ........|..++..+-+. ..+..|.-++.
T Consensus 101 -~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~ 179 (539)
T KOG0548|consen 101 -PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK 179 (539)
T ss_pred -CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh
Confidence 44455666666665111000 0000011111000 0000111222222222110 00111111111
Q ss_pred hcCCCCcchHHHHHHHHH-hcCCHHHHHHHHhcCCC--C-------------ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 147 QMSPRDLISWNSIVSGHV-RSGDMSAAHELFDIMPE--R-------------NVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 147 ~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~--~-------------~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
....+ ....--.... ...... ..+.+ | -..-...+.++..+..+++.|.+-+...
T Consensus 180 ~~~~~---~~~~~~~~~~~~~~~p~------~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 180 GVDEL---LFYASGIEILASMAEPC------KQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred cCccc---cccccccccCCCCCCcc------cccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 10000 0000000000 000000 01100 0 1123456777788888999999999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHH-------HhhhhhhcCChHHHHHHHHhcCCC
Q 038200 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTA-------LIDLYSKCQKVEVAQRVFDSMADR 283 (523)
Q Consensus 211 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 283 (523)
.... -+..-++....++...|.+......-....+.|.. ...-|+. +..+|.+.++++.++..|.+...+
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 8754 34445566667788888888877777766665532 2222222 344667778899999999886442
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
... -....+....++++...+...- +.|... -...-...+.+.|++..|+..|.++++ ..+-|..
T Consensus 328 ~Rt-----~~~ls~lk~~Ek~~k~~e~~a~-------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~ 393 (539)
T KOG0548|consen 328 HRT-----PDLLSKLKEAEKALKEAERKAY-------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDAR 393 (539)
T ss_pred hcC-----HHHHHHHHHHHHHHHHHHHHHh-------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhH
Confidence 111 1122233455666666655554 335432 222335667889999999999999998 4566789
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..-.-+|.+.|.+..|++-.+...+. .|+ ...|..-..++....+++.|.+.|++..+.+|++......+.++
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL----~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL----DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 9999999999999999999988888864 343 44444445566667789999999999999999887777777766
Q ss_pred HHhc
Q 038200 442 YAVA 445 (523)
Q Consensus 442 ~~~~ 445 (523)
+...
T Consensus 470 ~~a~ 473 (539)
T KOG0548|consen 470 VEAQ 473 (539)
T ss_pred HHHh
Confidence 6653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.5e-07 Score=79.62 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+...|+++.|...++.+.+..|++ +..+..++.++.+.|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34556888999999999999999987654 578999999999999999999999988665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-05 Score=84.84 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCC--CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPED--NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.+..++...|++++|...+++.... ..+..++ ..+...+..++...|+.++|...+.++.++
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444455555555555555544321 0111111 223333344455555555555555555553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=86.86 Aligned_cols=439 Identities=10% Similarity=0.037 Sum_probs=255.6
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHh
Q 038200 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFV 146 (523)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 146 (523)
+...|+..|-+..+.+ ..=...|..|...|....+...|.+.|+...+.+.. +......+.+.|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555666665555432 112336777888777777777888888888776533 67778888888999899988888844
Q ss_pred hcCCCCc-----chHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 147 QMSPRDL-----ISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 147 ~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
...+.+. ..|--..-.|.+.++...|+.-|+.... .|...|..++.+|...|.+..|+++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 3333221 2233334446778888888888887765 46778888999999999999999999888773 454
Q ss_pred HH-HHHHHHHHHhccccHHHHHHHHHHHHHcCC------CCchHHHHHHhhhhhhcCChHHHHHHHHhcC-------C--
Q 038200 219 DK-TMASVLTACGRSARFNEGRSVHGYTVRTSL------KPNIILDTALIDLYSKCQKVEVAQRVFDSMA-------D-- 282 (523)
Q Consensus 219 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~-- 282 (523)
.. .--......+..|.+.++...+.......- ..-..++-.+...+.-.|-..+|..++++-. .
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 32 112222334678888888888877665310 0011222222222222232233333333221 1
Q ss_pred --CChHHHHHHHHHHHhcCChH--H----HHHH-HHHHHhCCCC---------------CCCcCCCHHHHHHHHHHHhh-
Q 038200 283 --RNLVCWNAMILGHCIHGKPE--E----GIKL-FTALVNGTVA---------------GGSISPDEITFIGVICACVR- 337 (523)
Q Consensus 283 --~~~~~~~~li~~~~~~g~~~--~----a~~~-~~~m~~~~~~---------------~~~~~p~~~~~~~ll~~~~~- 337 (523)
.+...|-.+..+|...-..+ . ...+ +.+....+.. ......+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211000000 0 0001 1111111100 00011223334444433332
Q ss_pred ------c-CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 338 ------A-ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 338 ------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
. .+...|...+.+.++. -..+..+|+.|. .....|++.-|...|-+.... .+....+|..+...|..
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~s---ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALG-VLSGIGNVACAQHCFIKSRFS---EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHH-Hhhccchhhhhhhhhhhhhhc---cccchhheeccceeEEe
Confidence 1 2334677777777662 233455555554 447778888888887766642 34467788888888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH--HHhCCCccCCcee-E-----EEe-CCeEEEE
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL--MKKRRMGRMPGCR-L-----VDL-KEVVEKL 481 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~-~-----~~~-~~~~~~~ 481 (523)
..+++-|...+.+...++|.+...|...+......|+.-++..+|.. ....+-...++.- | ... ++-...+
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~ 942 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEES 942 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHH
Confidence 99999999999999999999988888888888889998888888876 2222223333320 0 011 1111222
Q ss_pred ecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 482 KVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 482 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
+.....+..+--.+++.....|+...|....|++
T Consensus 943 I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gst 976 (1238)
T KOG1127|consen 943 INTARKISSASLALSYYFLGHPQLCFAYAANGST 976 (1238)
T ss_pred HHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhH
Confidence 2222445556666778888888888888777765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-07 Score=73.58 Aligned_cols=110 Identities=8% Similarity=-0.086 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+..++...|++++|...|+.+.. --+.+...|..+..++...|++++|...|++.... .+.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l---~p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML---DASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHHHHH
Confidence 33445556666666666666666665 23335566666666666666777777666666642 23345556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+...|+.++|...++.+++..|+++..+.....++
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 66667777777777776666666666665555444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=74.08 Aligned_cols=109 Identities=6% Similarity=-0.065 Sum_probs=93.2
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
.++++..+ +.| ..+..+...+...|++++|...|+..... -+.+...+..+..++...|++++|...|+++.
T Consensus 14 ~~~~~al~---~~p--~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLLS---VDP--ETVYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHH---cCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555554 234 34667788899999999999999998853 24467888888889999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+++|+++..+..++.++...|++++|+..|++..+..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999987754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-05 Score=67.80 Aligned_cols=285 Identities=10% Similarity=0.048 Sum_probs=138.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH-HHHHHhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII-LDTALIDL 263 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~ 263 (523)
.-.--+...+...|++..|+.-|...++.+ +.+-.++..-...|...|+...|..-+...++. .||-. .-..-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 334445556666667777777776666532 112233444445566666666666666666663 34422 12223345
Q ss_pred hhhcCChHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 264 YSKCQKVEVAQRVFDSMADRNL------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
+.+.|.++.|..-|+.+.+.++ ..+..++.. ++ .......+..+.-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------~e---------------------~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------QE---------------------HWVLVQQLKSASG 167 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-------HH---------------------HHHHHHHHHHHhc
Confidence 5566666666666666544221 111111100 00 0011122233344
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
.|+...|+.....+.+ -.+.+...|..-..+|...|.+..|+.-++...+. ...+...+..+-..+...|+.+.+
T Consensus 168 ~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred CCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHH
Confidence 5666666666666655 23345555555566666666666666555554432 122233334444445556666666
Q ss_pred HHHHHHHhhcCCCChhhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCC-eEEEE-ec
Q 038200 418 ERLAKSFVDMDPQDFSRYQFL------------LNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKE-VVEKL-KV 483 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~-~~ 483 (523)
+...+..++++|+.-.+|-.. +......++|.++++..+...+.. |....+.++. ++.+- ..
T Consensus 243 L~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e----p~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 243 LKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE----PEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC----Ccccceeeeeeheeeeccc
Confidence 666666666666543332211 112334455666666666554432 2211122211 11111 12
Q ss_pred CCCCchHHHHHHHHHHhcccCCcccc
Q 038200 484 GHFWRGGMKEEVNKMMECRQSRSLAT 509 (523)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 509 (523)
++++..++++.-++++...|++..++
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 23566666666666666666655443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=81.71 Aligned_cols=250 Identities=11% Similarity=0.020 Sum_probs=181.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
-+.+.|+..+|.-.|+..++.+ +-+...|..|.......++-..|+..+.+.++.. +.+..+.-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4567788888888888888764 3466788888888888888888888888888864 3367777788888888888888
Q ss_pred HHHHHHhcCCCCh-HHHHHHH---------HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH
Q 038200 273 AQRVFDSMADRNL-VCWNAMI---------LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT 342 (523)
Q Consensus 273 a~~~~~~~~~~~~-~~~~~li---------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 342 (523)
|.+.++.-..... ..|...- ..+..........++|-++.... +..+|+.....|.-.|--.|+++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~----~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL----PTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC----CCCCChhHHhhhHHHHhcchHHH
Confidence 8888776522100 0000000 12222233445566666665543 14477888888888888899999
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLA 421 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 421 (523)
+|...|+.+.. --+-|..+|+.|...++...+.++|+..|+++++ +.|. ......|...|...|.+++|...|
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999987 2344688999999999999999999999999996 5665 556677888899999999999999
Q ss_pred HHHhhcCCC----------ChhhHHHHHHHHHhcCChhHHHHH
Q 038200 422 KSFVDMDPQ----------DFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 422 ~~~~~~~p~----------~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
-.++.+.+. +..+|..|=.++.-.++.|-+.++
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 998875433 124777777777777877755544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-06 Score=74.41 Aligned_cols=133 Identities=8% Similarity=-0.018 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CC--
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---EL-- 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-- 376 (523)
++++.+++++.+.. +-|..+|....-++...|+++++++.++++.+. -.-|...|+....++.+. |.
T Consensus 125 ~~el~~~~kal~~d------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 125 NKELEFTRKILSLD------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccccccc
Confidence 34455555555432 223445555555555555555555555555552 122333444333333322 11
Q ss_pred --hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc----CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 377 --TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ----GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 377 --~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+++++...+++.. .+-+...|+.+...+... +...+|...+..+.+.+|.++.++..|+..|+..
T Consensus 197 ~~~e~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 197 AMRDSELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccHHHHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 23555666555532 233455666666665552 3445677777777777888888888888888763
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-05 Score=66.21 Aligned_cols=248 Identities=14% Similarity=0.055 Sum_probs=141.1
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHH-HHHH
Q 038200 166 SGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEG-RSVH 242 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~ 242 (523)
.|++..++..-..... .+...-..+.++|...|.+..... +... |-.|....+..+......-++.+.- .++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 4555555444433322 233333345556666666544332 1111 1233444444444444434443332 3444
Q ss_pred HHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 243 GYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 243 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|..-
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-------- 166 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-------- 166 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------
Confidence 555544444443444444556777788888888777733 3333333345566677778888888888763
Q ss_pred CCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchH
Q 038200 323 PDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 323 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
-+..|.+.|..++.+ .+.+.+|.-+|+++.+ ..+|++.+.+....++...|++++|..++++...+. ..++
T Consensus 167 ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd---~~dp 241 (299)
T KOG3081|consen 167 DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD---AKDP 241 (299)
T ss_pred chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc---CCCH
Confidence 345566666666543 3457777888888876 567777777777777777888888888888777542 3344
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhhcCCCCh
Q 038200 399 IMWVSLLSLCRFQGA-VAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~p~~~ 432 (523)
.+...++..-...|. .+-..+.+.+.....|..+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 555555554444443 4555666777777777544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=83.15 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=169.2
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
.+|-...-..+.+.+...|-...|..+|++. ..|...|.+|+..|+..+|..+..+..++ +|+...|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYC 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHH
Confidence 4555667778889999999999999999975 46778899999999999999999988883 59999999
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+.+..-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+. .+.-..+|..+..+..
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAAL 530 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHH
Confidence 9988888877888888888876552 2222333344578999999999887753 2334667888887888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC-CCc
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH-FWR 488 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 488 (523)
+.++++.|...|.....++|++...|+++..+|.+.|+..+|...+++..+.+.++ ..+ -.|. -.+..+ +..
T Consensus 531 qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~i----WENy--mlvsvdvge~ 603 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQI----WENY--MLVSVDVGEF 603 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Cee----eech--hhhhhhcccH
Confidence 88999999999999999999999999999999999999999999999888776322 211 1111 122233 566
Q ss_pred hHHHHHHHHHHhcc
Q 038200 489 GGMKEEVNKMMECR 502 (523)
Q Consensus 489 ~~~~~~l~~~~~~~ 502 (523)
+++++...+++...
T Consensus 604 eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777666655543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-05 Score=74.71 Aligned_cols=211 Identities=12% Similarity=0.153 Sum_probs=169.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
..+...+...|-...|..+|++. ..|..+|.+|...|+..+|..+..+..+ -+||+..|..+.+......-++
T Consensus 402 ~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHH
Confidence 34556677788888888888875 5688889999999999999999888887 3789999999998888888888
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 237 EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
+|.++.+..... ....+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.+.|.....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 888887765332 2333444445578999999999876543 456888888888999999999999999888
Q ss_pred CCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 314 GTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 314 ~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
..|| ...|+.+-.+|.+.++..+|...+.+..+. + .-+...|...+....+.|.+++|++.+.++...
T Consensus 548 -------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 548 -------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred -------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4576 568999999999999999999999999985 4 445667777788888999999999999887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-06 Score=84.34 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=166.0
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 110 HGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR--------DLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
|++.+... +-+...|-..|......++++.|++++++..+. -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444443 225677888999999999999999999988632 345788888888888888999999999876
Q ss_pred -CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC-CchHHHH
Q 038200 182 -RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PNIILDT 258 (523)
Q Consensus 182 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 258 (523)
-| ...|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.++++-+.|..++.++++.-.. -......
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 23 456888999999999999999999999886 3456678889999999999999999999998885322 1355666
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
..+..-.+.|+.+.+..+|+..... -...|+..|..-.++|+.+.+..+|++.+..+
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 6777788899999999999988652 45789999999999999999999999999987
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00066 Score=67.76 Aligned_cols=416 Identities=12% Similarity=0.058 Sum_probs=224.0
Q ss_pred ccCCchhHHHHhccCCC--CCcccHHHHHHH--HHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHH
Q 038200 33 DFGSPDYTVLVFKCINN--PGTFCVNAVIKA--YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGM 108 (523)
Q Consensus 33 ~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 108 (523)
..+++..|.+....+.+ ||. .|...+.+ +.+.|..++|..+++.....+. .|..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 45677888777776542 333 34455554 4567888888877777766543 377788888888888888888888
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHccCChHH----HHHHHhhcCCCCcchHHHHHHHHHhc-C---------CHHHHHH
Q 038200 109 CHGLALKNGVDFELPVMNSLINMYGCFGAMDC----ARNMFVQMSPRDLISWNSIVSGHVRS-G---------DMSAAHE 174 (523)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~ll~~~~~~-~---------~~~~a~~ 174 (523)
+|++..+. .|+......+..+|.|.+.+.+ |.+++...++.--..| ++++.+... . -..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW-SVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH-HHHHHHHHhccCCcccccchhHHHHHH
Confidence 88888765 4457777777777887776644 4555554433333333 333333321 1 1223455
Q ss_pred HHhcCCCCC--hhH---HHHHHHHHHhcCCchHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 175 LFDIMPERN--VVS---WNIMISGYSKSGNPGCSLKLFR-EMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 175 ~~~~~~~~~--~~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
.++.+.+.. ..+ ...-...+...|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555554422 111 1111223445677788877773 3333322334444455666667777777777777777776
Q ss_pred CCCCchHH-----HHHHhhh--------hhhcCChHHHHHHHHhcCCC-ChHHHHHHHHHHH---hcCChHHHHHHHHHH
Q 038200 249 SLKPNIIL-----DTALIDL--------YSKCQKVEVAQRVFDSMADR-NLVCWNAMILGHC---IHGKPEEGIKLFTAL 311 (523)
Q Consensus 249 ~~~~~~~~-----~~~l~~~--------~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~a~~~~~~m 311 (523)
|.. |-.+ +..|-.. +...+..+...+...+.... ....|-+-+.++. .-|+.+++.-.|-+-
T Consensus 256 ~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 256 GND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred CCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 633 2111 1111111 11112223333333322221 1122333333322 335555554443322
Q ss_pred HhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH-------HHHHHHHHHHcCCCh-----HH
Q 038200 312 VNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA-------HYWCMANLYAGAELT-----EE 379 (523)
Q Consensus 312 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~ 379 (523)
.. -.| .+..=+..|...=..++-..++...... .++.. .+.+.+....-.|.+ +.
T Consensus 335 fg-------~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 335 FG-------DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred hC-------CCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 11 122 2222223333333444455555555432 22221 122233333333322 22
Q ss_pred HHHHH-------HhCCCCCCCCCch---------HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 380 AEEIL-------RKMPEDNDNMSFE---------SIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 380 A~~~~-------~~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
-..++ +.-.+.+.+.-|. ..+.+.++..|.+.++ +-+|+-+++......|.++.+-..|++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 22222 2222222223333 2355677788888887 456777788888899999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 441 VYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+|.-.|-+..|.++|+.+.=++|..+.
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 999999999999999998777766554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-06 Score=70.93 Aligned_cols=155 Identities=14% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~ 334 (523)
..+-..+...|+-+....+...... .+.......+....+.|++..|...|++..... ++|...++.+.-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------p~d~~~~~~lgaa 143 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA------PTDWEAWNLLGAA 143 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC------CCChhhhhHHHHH
Confidence 3344444455555555554444322 233333445555555555555555555555532 3445555555555
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
|.+.|+++.|..-|.+..+. ..-++..++.|...|.-.|+++.|..++...... -.-|..+-..+.......|++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 144 LDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCCh
Confidence 55555555555555555552 2223444455555555555555555555554422 122344444444455555555
Q ss_pred HHHHHHHHH
Q 038200 415 AMVERLAKS 423 (523)
Q Consensus 415 ~~a~~~~~~ 423 (523)
+.|+.+..+
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-06 Score=70.24 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=110.7
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
+..|...|+++.+....+.+..+. ..+...++.+++...+++..... +.|...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCC
Confidence 345666777666544443322221 01223566778888888877754 4567788888888999999
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHH-HcCCC--hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLY-AGAEL--TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMV 417 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 417 (523)
+++|...|++..+. .+.+...+..+..++ ...|+ .++|.+++++..+. .+.+...+..+...+...|++++|
T Consensus 89 ~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 89 YDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL---DANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHH
Confidence 99999999988873 344677788888764 66676 58999999998864 233566777777788899999999
Q ss_pred HHHHHHHhhcCCCChhhH
Q 038200 418 ERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 418 ~~~~~~~~~~~p~~~~~~ 435 (523)
...++++.+..|.+..-+
T Consensus 164 i~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 164 IELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHhhCCCCccHH
Confidence 999999999888655433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.4e-06 Score=75.00 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=101.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-L---VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-- 325 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-- 325 (523)
...+..++..+...|+++.|...|+++.. |+ . .++..+..++...|++++|...++++.+.. |+.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-------PNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------cCCCc
Confidence 34444455555555666666666655433 11 1 244555566666666666666666666533 321
Q ss_pred --HHHHHHHHHHhhc--------CcHHHHHHHHHHhhHhcCCCCChHH-----------------HHHHHHHHHcCCChH
Q 038200 326 --ITFIGVICACVRA--------ELLTEGRKYFRQMIDFYKIKPNFAH-----------------YWCMANLYAGAELTE 378 (523)
Q Consensus 326 --~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~~l~~~~~~~g~~~ 378 (523)
.++..+..++... |+.+.|.+.++.+.+. .+-+... ...+...|.+.|+++
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 1233333333332 5666677777666653 1111111 124566788999999
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
+|...+++..+...+.+.....+..+..++...|++++|..+++.+....|
T Consensus 184 ~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 184 AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999998864322233456788888999999999999999988876555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.2e-06 Score=82.94 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=130.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
++..+-.|.....+.|++++|..+|+...+ ..|+ ......+..++.+.+++++|+..+++... .-+-+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~ 155 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ-------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAR 155 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHH
Confidence 577888889999999999999999999999 5576 45677788889999999999999999987 4445677
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
....+..++.+.|++++|.++|+++... .+-+...+..+..++...|+.++|...|+++.+...+-...|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~--- 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL--- 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH---
Confidence 7788889999999999999999999853 2334778888888999999999999999999986554444554443
Q ss_pred HhcCChhHHHHHHHHHHhCCCccCCceeEE
Q 038200 443 AVAGQWEDVARVRELMKKRRMGRMPGCRLV 472 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 472 (523)
++...-...++++.-.+.......+++
T Consensus 230 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (694)
T PRK15179 230 ---VDLNADLAALRRLGVEGDGRDVPVSIL 256 (694)
T ss_pred ---HHHHHHHHHHHHcCcccccCCCceeee
Confidence 333344556666654444444443333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-05 Score=79.79 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
--..++..+...|....+++++..+++.+++.+|.|..+...++..|. +.|..
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 334566666777888899999999999999999998888889998887 44444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-07 Score=54.48 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=9e-08 Score=54.80 Aligned_cols=32 Identities=31% Similarity=0.449 Sum_probs=18.2
Q ss_pred CCCCCchHHHHHHHHHHccCChHHHHHHHhhc
Q 038200 117 GVDFELPVMNSLINMYGCFGAMDCARNMFVQM 148 (523)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 148 (523)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-06 Score=69.47 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=110.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
|... ..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++... .-++|...
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhh
Confidence 3444 555566667777777777666654432 23444555566677777777777777777776 56667777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
|+.+.-+|.+.|++++|..-|.+..+- ...+....+.+...+.-.|+.+.|..++.......+.+..+-..|..+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 777777777777777777777777653 23345666777777777777777777777777766667777777777777
Q ss_pred hcCChhHHHHHHH
Q 038200 444 VAGQWEDVARVRE 456 (523)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (523)
..|++++|.++..
T Consensus 214 ~~g~~~~A~~i~~ 226 (257)
T COG5010 214 LQGDFREAEDIAV 226 (257)
T ss_pred hcCChHHHHhhcc
Confidence 7777777776644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-05 Score=78.64 Aligned_cols=144 Identities=8% Similarity=0.015 Sum_probs=119.9
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E 325 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~ 325 (523)
.+.+...+..|..+....|.+++|..+++.+.+ | +...+..++..+.+.+++++|+..+++..... |+ .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~~ 154 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSSA 154 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCCH
Confidence 455688999999999999999999999999865 4 55678888999999999999999999999954 66 4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.....+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|++..+. ..+....|+.++
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 229 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA---IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---hCcchHHHHHHH
Confidence 5666777788999999999999999997 34445889999999999999999999999999864 344444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-05 Score=67.83 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND-KTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (523)
++..+-..+...+..++|+.++.++++. .|+. ..|+....++...| ++++++..++.+.+... .+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 3444445566678889999999988885 4443 45555555566666 57889999988888753 355566655544
Q ss_pred hhhcCC--hHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 264 YSKCQK--VEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 264 ~~~~~~--~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
+.+.|+ .++++.+++++.+ .|..+|+....++...|+++++++.+.++++.. .-|...|+.....+.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------VRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------CCchhHHHHHHHHHHhc
Confidence 555555 2667778877754 567888888888889999999999999999865 33455666555554443
Q ss_pred ---Cc----HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC----CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 339 ---EL----LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA----ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 339 ---~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
|. .+....+..++.. ..+-|...|+.+...+... ++..+|.+.+.+.... -......+..|+..
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~---~~~s~~al~~l~d~ 264 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK---DSNHVFALSDLLDL 264 (320)
T ss_pred cccccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc---cCCcHHHHHHHHHH
Confidence 22 3467777767766 3455678888888888773 4456788888887642 13345566666666
Q ss_pred HHh
Q 038200 408 CRF 410 (523)
Q Consensus 408 ~~~ 410 (523)
|..
T Consensus 265 ~~~ 267 (320)
T PLN02789 265 LCE 267 (320)
T ss_pred HHh
Confidence 654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-05 Score=64.60 Aligned_cols=244 Identities=14% Similarity=0.066 Sum_probs=159.5
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
-+.-.|++..++..-...... +-+...-..+.++|...|.+.... ..+.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777766554443332 133444445556666666654322 2222222 3334444444444444444444
Q ss_pred HHHH-HHhcCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 038200 273 AQRV-FDSMADR----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347 (523)
Q Consensus 273 a~~~-~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (523)
-..- .+.+..+ +......-...|+..|++++|++...... ..+ ....=...+.+..+++-|.+.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---------~lE--~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE---------NLE--AAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc---------hHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3333322 22233333456889999999999987621 122 222223455677899999999
Q ss_pred HHHhhHhcCCCCChHHHHHHHHHHH----cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038200 348 FRQMIDFYKIKPNFAHYWCMANLYA----GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (523)
+++|.+- .+..+.+.|..++. ..+...+|.-+|+++.++ ..|+..+.+....++...|++++|+.+++.
T Consensus 160 lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 160 LKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 9999873 24556666666654 456789999999999975 789999999999999999999999999999
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHh
Q 038200 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVA-RVRELMKK 460 (523)
Q Consensus 424 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 460 (523)
++..++++|.+...++.+-...|...++. +.+.+++.
T Consensus 233 aL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 233 ALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999999999999999887754 45666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0001 Score=68.50 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=84.8
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 413 (523)
+...|+++.|+..++.+.. ..+-|+.........+.+.++.++|.+.++++... .|+ ......+..++...|+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCC
Confidence 3455777778888777776 45556666667777777888888888888877753 454 5556666677777888
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
..+|.++++.....+|+++..|..|+.+|...|+..++....-+.
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 888888888877777877778888887777777766666655544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-06 Score=79.25 Aligned_cols=126 Identities=13% Similarity=0.141 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
......|+..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|.+++++.... .+.+...+...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d~~LL~~Q 240 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE---NPQDSELLNLQ 240 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 344556677777889999999999999885 244 4556888888889999999999998853 34466666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
...+...++++.|..+.+++.+..|++..+|..|+.+|.+.|++++|+..++.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777899999999999999999999999999999999999999999999988866
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=68.40 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+......+...+...|++++|.+.++.+... .+.+...+..+...+...|+++.|..+++++.+.+|+++..+..++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 3445556677777788888888888777643 2335566666777777788888888888888888888788888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.8e-05 Score=76.89 Aligned_cols=235 Identities=13% Similarity=0.108 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHccCChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 038200 122 LPVMNSLINMYGCFGAMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG 198 (523)
Q Consensus 122 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 198 (523)
...+..|+..|...+++++|.++.+... .| ....|-.+...+.+.++.+++..+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 3455556666666666666666655443 22 223333333344455554443322 3444444555
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
++.-+..+...|... .-+...+..+..+|.+.|+.+++..+|+++++.. +-++.+.|.+...|... ++++|..++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 565555555555553 3455577888888999999999999999999887 44788888888888888 8999988877
Q ss_pred hcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC
Q 038200 279 SMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK 358 (523)
Q Consensus 279 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (523)
+.. ..|...+++..+.++|.++.... |+...+ -.++.+++....+..
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~~-------~~d~d~---------------f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHYN-------SDDFDF---------------FLRIERKVLGHREFT 220 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhcC-------cccchH---------------HHHHHHHHHhhhccc
Confidence 654 33677778899999999988853 543322 222233333322222
Q ss_pred CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 359 PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
--..++..+...|...++++++..+++.+.+.. +-+......++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~---~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD---NKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC---CcchhhHHHHHHHHH
Confidence 334556666677777788888888888887542 223444444554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=64.46 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
.+++... ..|+ ......+...+...|++++|...|+.+.+. .+.+...+..+...+...|++++|..+++
T Consensus 5 ~~~~~l~-------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLG-------LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHc-------CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 3354 345666777788889999999999998873 34577888888999999999999999999
Q ss_pred hCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
+.... .+.+...+..+...+...|+++.|...++.+.+.+|++..
T Consensus 76 ~~~~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 76 LAAAL---DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 88753 2445667777777888999999999999999999997654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.7e-05 Score=62.81 Aligned_cols=189 Identities=13% Similarity=0.144 Sum_probs=107.0
Q ss_pred ccccHHHHHHHHHHHHHc---C-CCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh-HHHHHHHHHHHhcCChH
Q 038200 231 RSARFNEGRSVHGYTVRT---S-LKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL-VCWNAMILGHCIHGKPE 302 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~ 302 (523)
...+.++..+++..+... | ..++. .+|..++-+...+|+.+.|...++.+.. |+. ..-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 344566666666665532 2 33332 3455555566666777777776666644 221 11111112234456777
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHH
Q 038200 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 303 ~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
+|+++++.+.... +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-|...|...|++++|.-
T Consensus 104 ~A~e~y~~lL~dd------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 104 EAIEYYESLLEDD------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hHHHHHHHHhccC------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 7777777776654 33455555555555555666666666666666 456667777777777777777777777
Q ss_pred HHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCCC
Q 038200 383 ILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG---AVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 383 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~ 431 (523)
.+++++- +.| +...+..+...+...| +.+.+..+|.+++++.|.+
T Consensus 176 ClEE~ll----~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 176 CLEELLL----IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHH----cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 7777653 233 3444444444433322 4566667777777766643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-06 Score=65.72 Aligned_cols=99 Identities=7% Similarity=-0.039 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
+......+...+...|++++|.++|+-... +.| +..-|..|..+|...|++++|...|..+..++|++|.++..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 344555677778899999999999999885 344 567788888889999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC
Q 038200 439 LNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+.+|...|+.+.|.+.|+......
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00013 Score=67.90 Aligned_cols=150 Identities=18% Similarity=0.155 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH-HHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG-VICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYW 365 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 365 (523)
+--....+...|++++|+..+..++.. .|+...|.. ....+.+.++..+|.+.++++... .|+ ....-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~ 378 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHH
Confidence 333444556789999999999999985 466555554 456789999999999999999973 444 66777
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+..+|.+.|++.+|+.+++..... .+-|+..|..|..+|...|+..++. ...+..|...
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~-----------------~A~AE~~~~~ 438 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEAL-----------------LARAEGYALA 438 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHH-----------------HHHHHHHHhC
Confidence 8899999999999999999998864 4667889999999999999865544 4556677888
Q ss_pred CChhHHHHHHHHHHhCCCccCC
Q 038200 446 GQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
|+|++|+..+.+.+++.-...+
T Consensus 439 G~~~~A~~~l~~A~~~~~~~~~ 460 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKLGFP 460 (484)
T ss_pred CCHHHHHHHHHHHHHhccCCcH
Confidence 9999999888888776433333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00022 Score=60.48 Aligned_cols=184 Identities=13% Similarity=0.044 Sum_probs=103.7
Q ss_pred cCCchHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 197 SGNPGCSLKLFREMMK---SG-FRGNDKT-MASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
..+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++++...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 4456666666666643 23 3344433 3444445556666677777776666553 222222222222334456677
Q ss_pred HHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 272 VAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 272 ~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
+|+++|+.+.+. |.+++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 777777766542 3345555555555566666666666666664 4556667777777777777777777777
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPE 389 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 389 (523)
+++.- -.+.++..+..+...+.-.| +.+-|.++|.+.++
T Consensus 178 EE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 178 EELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77664 22334455555555544333 34456666666663
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=63.43 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=71.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSL 404 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l 404 (523)
|..++..+ ..++...+...++.+.+.++-.+ .....-.+...+...|++++|.+.|+.+.... ..|. ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 33344443 35666666666666666422111 12333345566667777777777777776431 1111 2334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
...+...|++++|...++.... .+-.+..+..++.+|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5566677777777777755322 222455666777777777777777777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0028 Score=58.62 Aligned_cols=401 Identities=9% Similarity=0.023 Sum_probs=199.7
Q ss_pred HhhccCCchhHHHHhccCCC---CC------cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH--H
Q 038200 30 HSADFGSPDYTVLVFKCINN---PG------TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC--A 98 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~ 98 (523)
.+.+.+++.+|.++|.++-. .+ .+.-+.++++|..+ +.+.....+....+. .| ...|..+..++ -
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 45678999999999988742 22 12345667777654 555555566666553 34 44566666664 3
Q ss_pred ccCCchHHHHHHHHHHHh--CCC------------CCchHHHHHHHHHHccCChHHHHHHHhhcCC--------CCcchH
Q 038200 99 KTGCVERGGMCHGLALKN--GVD------------FELPVMNSLINMYGCFGAMDCARNMFVQMSP--------RDLISW 156 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 156 (523)
+.+.+++|.+.+..-... +.. +|-..-+..+.+++..|.+.+++.+++++.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899998887766554 221 1222335667788889999999988888762 266677
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--cc
Q 038200 157 NSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--AR 234 (523)
Q Consensus 157 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~ 234 (523)
+.++-.+++.=-++.-.. +...=..-|.-++..|.+.=+.-++ -.-..+.|....+..++....-. .+
T Consensus 171 d~~vlmlsrSYfLEl~e~----~s~dl~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKES----MSSDLYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHHhHHHHHHHHHh----cccccChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 765544433211111111 0000011122233332221100000 00001223333333333322211 11
Q ss_pred HHHHHHHHHHHHHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHHhcC--------CCChHHHHHHHHHHHhcCChHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMA--------DRNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
..--.+++......-+.|+- -+...|...+.. +.+++..+.+.+. +.-..++..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11222333333333333432 222233333332 3333333322221 122345566666666666666666
Q ss_pred HHHHHHHhCCCCCCCcCCCHHH----------HH-----------------------------------HHHH---HHhh
Q 038200 306 KLFTALVNGTVAGGSISPDEIT----------FI-----------------------------------GVIC---ACVR 337 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~----------~~-----------------------------------~ll~---~~~~ 337 (523)
+.+.-+... .|+... +. .|+. -+-+
T Consensus 319 q~l~lL~~l-------dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 319 QYLALLKIL-------DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHhc-------CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 666555442 233221 00 1111 1112
Q ss_pred cCc-HHHHHHHHHHhhHhcCCCCChHHHHHHH----HHHHc---CCChHHHHHHHHhCCCCCCCCCc----hHHHHHHHH
Q 038200 338 AEL-LTEGRKYFRQMIDFYKIKPNFAHYWCMA----NLYAG---AELTEEAEEILRKMPEDNDNMSF----ESIMWVSLL 405 (523)
Q Consensus 338 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~ 405 (523)
.|. -++|+.+++.+.+- -+-|..+-+.+. ..|.. ...+.+-+.+-+-+. ..|++| +...-+.+.
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~--e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT--EVGLTPITISEEEIANFLA 467 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hcCCCcccccHHHHHHHHH
Confidence 222 44455555555441 111222221111 11111 111111111111111 234444 345666666
Q ss_pred HH--HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 406 SL--CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 406 ~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.| +..+|++.++.-+-..+.+..| ++.+|..++-++....++++|..++..+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 65 6789999999999999999999 8999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=50.41 Aligned_cols=35 Identities=14% Similarity=0.386 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS 87 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 87 (523)
.+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.3e-05 Score=73.40 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC
Q 038200 57 AVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG 136 (523)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 136 (523)
.|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+.++..+. +..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 45556666788889999999888764 54 3455677777777888888888888876433 6777777778888889
Q ss_pred ChHHHHHHHhhcC--CC-CcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 137 AMDCARNMFVQMS--PR-DLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 137 ~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
+.+.|+++.+++. .| +-.+|..|..+|...|+++.|+..++.++-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999988886 34 556888899999999999999999888874
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-05 Score=60.75 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLL 439 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 439 (523)
++..++..+.+.|++++|.+.++++.....+.......+..+..++...|+++.|...++.+....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555555666666666655553211111112333444555566666666666666666555542 34455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.9e-06 Score=49.04 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMP 85 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 85 (523)
.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567777777777777777777777777777766
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.4e-05 Score=59.51 Aligned_cols=112 Identities=7% Similarity=0.021 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
.++..+...+.+.|++++|...|+.+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+.....+.......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566677788889999999999999987421111 145666788999999999999999999875322222234567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
..++...|+.+.|...++.+.+..|+++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 788889999999999999999999987655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=57.52 Aligned_cols=95 Identities=19% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|+++.|...++.+....|.++.++..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 455677778888999999999888753 23334566677777888899999999999999888888888889999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...+++..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999988887553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00026 Score=57.30 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH----HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE----ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-- 360 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 360 (523)
.|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+... ...|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~ 84 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELK 84 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHH
Confidence 455555555 4788888888899998865 332 33444557788899999999999999885 32222
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 424 (523)
......|...+...|++++|+..++.... .......+......+...|+.++|...|+++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPD----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccC----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 23455678888999999999999988652 2334556666777899999999999999875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.9e-06 Score=47.69 Aligned_cols=33 Identities=30% Similarity=0.681 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 217 (523)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567788888888888888888888888777766
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=48.27 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN 218 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 218 (523)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.6e-06 Score=59.80 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|+++.|+.+++++.+.... .++...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777776643110 12444555566677777777777777777 55566566666677777888888888877
Q ss_pred HHHH
Q 038200 454 VREL 457 (523)
Q Consensus 454 ~~~~ 457 (523)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-05 Score=54.25 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG-QWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 461 (523)
++.+|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888888999999999999999999999999999999999999999 799999999987653
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00092 Score=60.95 Aligned_cols=195 Identities=9% Similarity=0.039 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCC---C-C-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREMMKSGFR---G-N-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
|......|...+++++|.+.|.+....... + + ...|.....++.+. ++++|...+++ .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HH
Confidence 444566777788888888877766432110 0 0 11222222222222 44444444433 33
Q ss_pred hhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH-GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
..|...|++..|-..+. .+...|... |+++.|++.|++..+.-...+...--...+..+...+.+.|+
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 34455555555444333 234455555 666666666666544210000000012244555566667777
Q ss_pred HHHHHHHHHHhhHhcC----CCCChH-HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYK----IKPNFA-HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLC 408 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 408 (523)
+++|.++|+++....- .+.+.. .+...+-++...|++..|.+.+++......++..+ ......|+.++
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 7777777776655311 111121 22233334555667777777777665443333222 34444455544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=62.82 Aligned_cols=109 Identities=15% Similarity=0.018 Sum_probs=73.9
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 413 (523)
+.+.+++++|+..|.++++ -.+-|+..|..=..+|.+.|.++.|++-.+..+. +.|. ...|..|..+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~----iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS----IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh----cChHHHHHHHHHHHHHHccCc
Confidence 4556777777777777776 3344566666677777777777777777777764 3443 5677777777777788
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+++|.+.|+++++++|++......|-.+=.+.+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888877655555554444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=60.98 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|...|++..............+..+...+...|+++.|...++++.+..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 45677778888888999999999988874321111124567777888899999999999999999999988888999999
Q ss_pred HHHhcCChhHHH
Q 038200 441 VYAVAGQWEDVA 452 (523)
Q Consensus 441 ~~~~~g~~~~A~ 452 (523)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 998888744433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.7e-05 Score=52.31 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+...|++++|...++.+++..|+++.++..++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888888888888888654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-05 Score=69.46 Aligned_cols=109 Identities=12% Similarity=-0.043 Sum_probs=89.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
-...+...|+++.|+..|+++.+. .+.+...|..+..+|...|++++|+..+++++.. .+.+...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345677889999999999999983 4456788888999999999999999999999863 23356677888888999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
.|++++|...++++++++|+++.....+..+..+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999988777666555433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00032 Score=61.60 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCChh
Q 038200 357 IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ---GAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.+-|...|..|...|...|+++.|..-|.+..+. ..++...+..+..++..+ .+..++..++++++..+|.++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 4557999999999999999999999999998864 244566666776664333 3478999999999999999999
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+...|+..+...|++.+|...|+.|.+.....+|
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999887654444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=67.12 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=84.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
.....+...|++++|+.+|++++. ..|+ ...|..+..+|...|++++|+..++++.+. -+.+...|..+.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~-------~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg 77 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID-------LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 345667889999999999999998 8886 557777888999999999999999999873 344678888999
Q ss_pred HHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.+|...|++++|...|++..+ +.|+...+...+
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~----l~P~~~~~~~~l 110 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGAS----LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHH----hCCCCHHHHHHH
Confidence 999999999999999999985 455544444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=60.48 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
....|..++..+...|++++|+..+++......+......++..+...+...|++++|...++++.++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45667778888889999999999999987432111112457888888999999999999999999999998888888888
Q ss_pred HHHH-------hcCChhHHHHHHHH
Q 038200 440 NVYA-------VAGQWEDVARVREL 457 (523)
Q Consensus 440 ~~~~-------~~g~~~~A~~~~~~ 457 (523)
.+|. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8888 77787766555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=66.26 Aligned_cols=132 Identities=13% Similarity=0.211 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhc-CcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCC---CCchH
Q 038200 327 TFIGVICACVRA-ELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDN---MSFES 398 (523)
Q Consensus 327 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~ 398 (523)
.+..+...|... |+++.|++.|++..+.+..... ..++..+...+.+.|++++|.++|+++...... ...+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 455566677777 8999999999998775432222 456677888999999999999999987643211 12222
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHHHh--cCChhHHHHHHHHH
Q 038200 399 I-MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-----DFSRYQFLLNVYAV--AGQWEDVARVRELM 458 (523)
Q Consensus 399 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~~--~g~~~~A~~~~~~m 458 (523)
. .+...+-.+...||...|.+.++...+.+|. .......|+.+|.. ...+.+++.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 2333444667789999999999999998874 23355566777654 24455666666544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00054 Score=62.15 Aligned_cols=136 Identities=11% Similarity=0.137 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-CVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 468888888888889999999999998654 2233444444443 33357788899999999984 56677888
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFE---SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
...++.+...|+.+.|..+|++.... +.++ ..+|...+..-.+.|+.+.+..+.+++.+.-|.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999999864 3333 36899999999999999999999999999887643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=64.23 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=91.8
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
..-+.+.+++++|+..|.+.++ +.| |++.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~----l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE----LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh----cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 3456788999999999999996 455 56666677778999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhccc
Q 038200 447 QWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQ 503 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 503 (523)
++++|++.|++..+ .+|+. +-.++.++..++.+++.+
T Consensus 164 k~~~A~~aykKaLe----ldP~N----------------e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE----LDPDN----------------ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhc----cCCCc----------------HHHHHHHHHHHHHhcCCC
Confidence 99999999987644 44532 124566777777777666
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=44.15 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGF 83 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 83 (523)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=52.67 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++..... .+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 344555666677777777777777652 2333456666777777777777777777776643 22233456666667
Q ss_pred HHhcCCHHHHHHHHHHHhhcCC
Q 038200 408 CRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p 429 (523)
+...|+.+.|...++.+.+..|
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccCC
Confidence 7777777777777777776655
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0046 Score=50.02 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=108.3
Q ss_pred cCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC-CCCchHH
Q 038200 321 ISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-NMSFESI 399 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 399 (523)
..|+...-..|..++.+.|+..+|...|++...- -+.-|......+.++....+++.+|...++++.+... +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 4577777778888999999999999999999883 3455788888899999999999999999998775421 223443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...+...+...|.++.|+..|+.+...-| ++..-......+.++|+.+++..-+..+.+.
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34566788999999999999999999888 5666777788889999988887766655543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.4e-05 Score=50.51 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=50.7
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+...+...|++++|.+.|+++++. .+-+...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566788899999999999999864 233677788888888999999999999999999999764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0018 Score=59.05 Aligned_cols=159 Identities=9% Similarity=-0.012 Sum_probs=106.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH--HHhhcCcHHHHHHHHHHhhHhcCCCCChHHH------
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC--ACVRAELLTEGRKYFRQMIDFYKIKPNFAHY------ 364 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------ 364 (523)
.++...|++++|.+.--...+.. +.. .+..+++ ++-..++.+.+...|++... ..|+-..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-------~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-------ATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMM 245 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-------cch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhh
Confidence 34556778888877766666532 221 2222332 23345677777777777664 33432211
Q ss_pred -------HHHHHHHHcCCChHHHHHHHHhCCCCC-CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 365 -------WCMANLYAGAELTEEAEEILRKMPEDN-DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 365 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
..=..-..+.|++.+|.+.+.+.+..+ ....|+...|.....+..+.|+.++|+.-.+.+.+++|.-...|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 111233467889999999998887532 223445666777777778889999999999999999887777888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.-+.++...++|++|.+-+++..+..
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888888899999999888886643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0016 Score=64.26 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=65.5
Q ss_pred CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhc--------CcHHHHHHHH
Q 038200 283 RNLVCWNAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRA--------ELLTEGRKYF 348 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~ 348 (523)
.+...|...+.+.... +....|..+|++.++ ..|+. ..+..+..++... .+...+.+..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-------ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-------SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4566677766664332 235677777777777 34653 3333332222111 1122222333
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
++.........++..|..+.-.+...|++++|...++++.+ ..|+...|..+...+...|+.++|.+.++++..++
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 32222101222334444444444445555555555555553 23444445555555555555555555555555555
Q ss_pred CCCh
Q 038200 429 PQDF 432 (523)
Q Consensus 429 p~~~ 432 (523)
|.++
T Consensus 484 P~~p 487 (517)
T PRK10153 484 PGEN 487 (517)
T ss_pred CCCc
Confidence 5444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.034 Score=51.69 Aligned_cols=406 Identities=11% Similarity=0.057 Sum_probs=232.4
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcc---cHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 038200 6 QIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTF---CVNAVIKAYSNSCVPDQGVVFYLQMIKNG 82 (523)
Q Consensus 6 ~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 82 (523)
++-+.+... |.|...|-+|+.-+...|..++.+++++++..|-.. +|..-|++=....++.....+|.+.+...
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444555544 688999999999999999999999999999876543 68888988888899999999999998864
Q ss_pred CCCCcccHHHHHHHHHccCCc------hHHHHHHHHHHH-hCCCC-CchHHHHHHHHHH---ccC------ChHHHHHHH
Q 038200 83 FMPNSYTFVSLFGSCAKTGCV------ERGGMCHGLALK-NGVDF-ELPVMNSLINMYG---CFG------AMDCARNMF 145 (523)
Q Consensus 83 ~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---~~g------~~~~A~~~~ 145 (523)
+ +...|...+...-+.... -...+.++.... .++.| +...|+..+..+- ..| +++...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 455566666655443321 123344554444 33444 3345555544332 223 455666667
Q ss_pred hhcCC-C---------CcchHHHHHHHH-----H--hcCCHHHHHHHHhcCCC-------C---ChhH-----------H
Q 038200 146 VQMSP-R---------DLISWNSIVSGH-----V--RSGDMSAAHELFDIMPE-------R---NVVS-----------W 187 (523)
Q Consensus 146 ~~~~~-~---------~~~~~~~ll~~~-----~--~~~~~~~a~~~~~~~~~-------~---~~~~-----------~ 187 (523)
.++.. | |-..|..=++.. . ...-+-.|.+.++++.. . +..+ |
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 76652 2 111111111110 0 00112233333333321 0 1111 2
Q ss_pred HHHHHHHHhc-----CCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHH
Q 038200 188 NIMISGYSKS-----GNP--GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 188 ~~li~~~~~~-----~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
-..|.--... |+. ...--++++.... +.-....|.---.-+...++-+.|........ +..+...--+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeH
Confidence 2233221111 111 1111122332221 12222233222233344455555554433222 1111111112
Q ss_pred hhhhhhcCChHHHHHHHHhc---------------------------------CCCChHHHHHHHHHHHhcCChHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSM---------------------------------ADRNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
...|.-.++-+.....|+++ ...-...|...+..-.+..-.+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 22222222222222222221 112345677788888888889999999
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
|-++.+.+. +.++...+++++.-++. |+...|..+|+.-... ++.++..-.-.+.-+.+.++-+.|..+|+..
T Consensus 420 F~k~rk~~~----~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 420 FIKLRKEGI----VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHhccCC----CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 999998874 56778888888887664 8888999999887763 3333344455667778889999999999977
Q ss_pred CCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 388 PEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 388 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
+++ +..+ ..+|..++..-...|+...+..+-+.+.+.-|..
T Consensus 493 v~r---~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 493 VER---LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHH---HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 643 3333 5688889988889999999999999998888853
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00092 Score=55.92 Aligned_cols=129 Identities=10% Similarity=0.103 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC--HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD--EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
..+..+...+...|++++|...|++..... ..+. ...+..+...+.+.|++++|...+++..+. .+-+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 108 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHH
Confidence 445555666666666666666666666643 1111 234555555566666666666666666552 2223444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+..++...|+...+..-++... ..+++|.++++++.+.+|++ |..++..+.
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~-----------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~ 162 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAE-----------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLK 162 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHH-----------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHH
Confidence 4455555555555444432222211 11577788888888888865 555555555
Q ss_pred hcCC
Q 038200 444 VAGQ 447 (523)
Q Consensus 444 ~~g~ 447 (523)
..|+
T Consensus 163 ~~~~ 166 (172)
T PRK02603 163 TTGR 166 (172)
T ss_pred hcCc
Confidence 5554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00028 Score=51.87 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcccHHHHHHHHHccC--------CchHHHHHHHHHHHhCCCCCchHH
Q 038200 55 VNAVIKAYSNSCVPDQGVVFYLQMIKNGF-MPNSYTFVSLFGSCAKTG--------CVERGGMCHGLALKNGVDFELPVM 125 (523)
Q Consensus 55 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 125 (523)
-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566777778999999999999999999 899999999999988653 234567889999999999999999
Q ss_pred HHHHHHHHc
Q 038200 126 NSLINMYGC 134 (523)
Q Consensus 126 ~~l~~~~~~ 134 (523)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.4e-05 Score=42.81 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSG 214 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 214 (523)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00068 Score=51.94 Aligned_cols=90 Identities=17% Similarity=0.035 Sum_probs=56.3
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNV 441 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 441 (523)
+..++-..|+.++|+.+|++..+.+ .... ...+..+...+...|++++|..+++......|+ +......++.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG--LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 4455666777777777777766432 2222 334555566677777777777777777766565 44455556666
Q ss_pred HHhcCChhHHHHHHHHH
Q 038200 442 YAVAGQWEDVARVRELM 458 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m 458 (523)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77777777777665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00071 Score=61.39 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-CCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG-AELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
.+|..++..+-+.+..+.|..+|.++.+. -..+...|......-.. .++.+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence 46888889999999999999999999863 33455666666666344 56777799999999865 67778889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+..+...|+.+.|..+|++++..-|.+. .+|...+..=.+.|+.+.+.++.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998655433 58889999999999999999999998775
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00083 Score=49.46 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHcCCCCchHHH
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASVLTACGRSA--------RFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
-...|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-....+|+.|...++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999876653 345677889999999999999999
Q ss_pred HHHhhhhhh
Q 038200 258 TALIDLYSK 266 (523)
Q Consensus 258 ~~l~~~~~~ 266 (523)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.5e-05 Score=51.05 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=40.8
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...|++++|.+.++++.+.+|+++.++..++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888888888888888888776554
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.045 Score=49.92 Aligned_cols=253 Identities=13% Similarity=0.114 Sum_probs=151.1
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 195 SKSGNPGCSLKLFREMMKSGFRGNDK--TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
.-.|+++.|.+-|+.|... |... ....|.-...+.|+.+.|.++-+.....-.. -.....+.++..+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3457777777777777652 2221 1222222334567777777666666554321 24455666777777777777
Q ss_pred HHHHHHhcCC-----CChH--HHHHHHHHHH---hcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcH
Q 038200 273 AQRVFDSMAD-----RNLV--CWNAMILGHC---IHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELL 341 (523)
Q Consensus 273 a~~~~~~~~~-----~~~~--~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~ 341 (523)
|+++++.-.. ++.. .-..|+.+-. -.-+...|...-.+..+ ..||.. .-.....++.+.|+.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K-------L~pdlvPaav~AAralf~d~~~ 279 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK-------LAPDLVPAAVVAARALFRDGNL 279 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-------cCCccchHHHHHHHHHHhccch
Confidence 7777765432 3332 1112222111 12245556665555555 557643 334445678899999
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
.++-.+++.+-+. .|.+..+. ...+.+.|+.. +.-+++..... ..+ .+......+..+....|++..|..-
T Consensus 280 rKg~~ilE~aWK~---ePHP~ia~--lY~~ar~gdta--~dRlkRa~~L~-slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 280 RKGSKILETAWKA---EPHPDIAL--LYVRARSGDTA--LDRLKRAKKLE-SLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred hhhhhHHHHHHhc---CCChHHHH--HHHHhcCCCcH--HHHHHHHHHHH-hcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999774 45555443 33345556532 22222211100 023 3456666777788889999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCCccCCce
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVA-GQWEDVARVRELMKKRRMGRMPGC 469 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~ 469 (523)
.+.+....|. .++|..|.++-... |+-.++...+-+..+. +.+|.+
T Consensus 352 Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW 398 (531)
T COG3898 352 AEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAW 398 (531)
T ss_pred HHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcc
Confidence 9999989884 46888888887655 9988888888777553 555654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.078 Score=52.60 Aligned_cols=355 Identities=12% Similarity=0.098 Sum_probs=202.4
Q ss_pred HHHhCCCchHHHHHHHHHH--------HCCCCCCcccHHH-----HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHH
Q 038200 61 AYSNSCVPDQGVVFYLQMI--------KNGFMPNSYTFVS-----LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNS 127 (523)
Q Consensus 61 ~~~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (523)
++.+..++++-+.+.+.++ .-|++.+..-|.. ++.-+...+.+..|.++-..+...-.. ...+|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHH
Confidence 3445566666655554433 3456665554443 455566777888888887666322111 2567777
Q ss_pred HHHHHHccC---ChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC--------ChhHHHHHHHHH
Q 038200 128 LINMYGCFG---AMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPER--------NVVSWNIMISGY 194 (523)
Q Consensus 128 l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~ 194 (523)
...-+.+.. +-+.+..+-+++.. ....+|..+...--.+|+.+.|..+++.=+.. +..-+...+.-+
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 777777653 33344444455544 45677888887777889999998888765531 222344455556
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
...|+.+-...++-.+.+. .+...|...+ .+.-.|..+|.+..+..-.. .|-+.|-...+...+-
T Consensus 557 ies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~~~a 621 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYNQDDNHQALA 621 (829)
T ss_pred HhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhhcccchhhhh
Confidence 6677777776666666543 1222222222 23344555665555432111 1112222222222111
Q ss_pred HH-HHhc-----CCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 275 RV-FDSM-----ADRNLVCWNAMILGHCIHGK----------PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 275 ~~-~~~~-----~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
.+ ++.. .++-..........+.+... ..+-+.+.+.+...- +..-...+.+--+.-+...
T Consensus 622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~----~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF----GGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh----ccccccCcHHHHHHHHHHc
Confidence 11 1110 01111111222233333322 122223333333321 0223334555566667778
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-+.... . .-|..+..+|.+.|+.++|.
T Consensus 698 g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskks-P-------IGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKS-P-------IGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred cchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C-------CCchhHHHHHHhcccHHHHh
Confidence 999898887776643 7888999999999999999999888887772 2 34556788899999999999
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
.++-+... +.....+|.+.|++.+|.++.-
T Consensus 765 KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 765 KYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 98776432 2267889999999999987644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00023 Score=64.51 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHh---hHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---CCCCchH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQM---IDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDN---DNMSFES 398 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 398 (523)
..|..|...|.-.|+++.|+...+.- .+.||-+. ....+..|..++.-.|+++.|.+.|+...... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777778999998766542 23345433 24567788999999999999999887643110 0123345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDM----D--PQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
....+|...|.-..+++.|+.++.+-+.+ + .....++.+|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66777888888888899999888765542 2 12466899999999999999999987775544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=49.35 Aligned_cols=57 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+...++++.|..+++.+++++|+++..+...+.+|.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788888888888888888888888888888888888888888888888887653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.013 Score=47.48 Aligned_cols=128 Identities=12% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CChHHHH
Q 038200 215 FRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RNLVCWN 289 (523)
Q Consensus 215 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 289 (523)
+.|+...-..+..++...|+..+|...|++....-+.-|..+.-.+.++....+++..|...++++-+ +.+.+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 34555555666666666777777777776666554455566666666666666666666666666543 1223344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
.+...|...|.+..|...|+..... -|+...-......+.++|+.+++..-+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~-------ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY-------YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 4555666666666666666666663 3544433333334455555554443333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=50.62 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=34.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCC---CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHc
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISP---DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAG 373 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 373 (523)
.|+++.|+.+++++.+.. | +...+..+..++.+.|++++|..++++ .+ ..| +......+..++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHH
Confidence 345555555555555532 3 222333345555555555555555555 11 111 12333334555555
Q ss_pred CCChHHHHHHHH
Q 038200 374 AELTEEAEEILR 385 (523)
Q Consensus 374 ~g~~~~A~~~~~ 385 (523)
.|++++|+++++
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=58.03 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=82.2
Q ss_pred hHHHHhccC--CCCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC----------
Q 038200 39 YTVLVFKCI--NNPGTFCVNAVIKAYSNS-----CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG---------- 101 (523)
Q Consensus 39 ~A~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 101 (523)
--...|+.. ..++..+|..+++.|.+. |..+-....+..|.+.|+.-|..+|+.|++.+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 468888999999998754 677777788899999999999999999999986532
Q ss_pred ------CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 102 ------CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 102 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
+-+-|++++++|...|+.||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 336789999999999999999999999999987664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.019 Score=50.77 Aligned_cols=79 Identities=6% Similarity=-0.146 Sum_probs=53.0
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc----HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHH
Q 038200 51 GTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT----FVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMN 126 (523)
Q Consensus 51 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (523)
+...+-.....+.+.|++++|++.|+.+... .|+... .-.+..++.+.+++++|...+++.++.-+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 3333444556667789999999999999885 344432 2345677788999999999999998875543333333
Q ss_pred HHHHH
Q 038200 127 SLINM 131 (523)
Q Consensus 127 ~l~~~ 131 (523)
..+.+
T Consensus 109 ~Y~~g 113 (243)
T PRK10866 109 LYMRG 113 (243)
T ss_pred HHHHH
Confidence 33333
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.069 Score=49.72 Aligned_cols=406 Identities=11% Similarity=0.046 Sum_probs=227.5
Q ss_pred HHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCC
Q 038200 41 VLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGV 118 (523)
Q Consensus 41 ~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 118 (523)
+++-++++ +.|..+|-.|+.-+...+.+++..+++++|..- ++--...|..-+.+=....+++.+..+|.+.+...+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 46666766 357889999999999999999999999999853 344455777778777777899999999999988744
Q ss_pred CCCchHHHHHHHHHHccCC---------hHHHHHHHhh-cC-C-CCcchHHHHHHHHH---------hcCCHHHHHHHHh
Q 038200 119 DFELPVMNSLINMYGCFGA---------MDCARNMFVQ-MS-P-RDLISWNSIVSGHV---------RSGDMSAAHELFD 177 (523)
Q Consensus 119 ~~~~~~~~~l~~~~~~~g~---------~~~A~~~~~~-~~-~-~~~~~~~~ll~~~~---------~~~~~~~a~~~~~ 177 (523)
+...|...+.--.+... +-+|-++.-. .. + .....|+..+..+- .+.+++.....+.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 46666666664443321 1222222211 11 2 24445555444321 2344555666676
Q ss_pred cCCC-C---------ChhHHHHHHHHH-----H--hcCCchHHHHHHHHHHH--CCCC----CCHHHHHHHHH-------
Q 038200 178 IMPE-R---------NVVSWNIMISGY-----S--KSGNPGCSLKLFREMMK--SGFR----GNDKTMASVLT------- 227 (523)
Q Consensus 178 ~~~~-~---------~~~~~~~li~~~-----~--~~~~~~~a~~~~~~m~~--~~~~----p~~~~~~~ll~------- 227 (523)
++.. | |-..|..=++.. + ..--+-.|...++++.. .|.. .+..+++.+-+
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 6654 1 112222111111 1 01123455566666543 2321 12333333222
Q ss_pred ----HHhc-----ccc--HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CCh---------
Q 038200 228 ----ACGR-----SAR--FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNL--------- 285 (523)
Q Consensus 228 ----~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--------- 285 (523)
--.. .|+ .....-++++.... +.....+|---...+...++-+.|+...+.-.+ |+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ye 344 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYE 344 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHh
Confidence 0000 011 01111122222222 122333333333344456677788877766543 221
Q ss_pred ------H---HHHHHHHHHHh---cCChHHHHHH------HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 038200 286 ------V---CWNAMILGHCI---HGKPEEGIKL------FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKY 347 (523)
Q Consensus 286 ------~---~~~~li~~~~~---~g~~~~a~~~------~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (523)
. +|..++..+.+ .++.+.+... ..++.-.. ..--...|...+....+..-++.|..+
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr-----~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKR-----INKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHH-----HhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 0 12222222111 1111111110 01110000 111234567778877888889999999
Q ss_pred HHHhhHhcC-CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 348 FRQMIDFYK-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 348 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
|-++.+. + +.+++..+++++..++ .|+..-|..+|+--... ++.+..-....+..+...++-+.|..+|+..++
T Consensus 420 F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 420 FIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 9999987 6 6788999999988776 57889999999876643 333344445566677888999999999997765
Q ss_pred cCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 427 MDPQ--DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 427 ~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.-.. -..+|..++.--..-|+...|..+=++|..
T Consensus 495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2221 245788888888888888777766665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.1 Score=51.26 Aligned_cols=245 Identities=9% Similarity=-0.014 Sum_probs=119.8
Q ss_pred chhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCcc--------cHHHHHHHHHccCCchHHH
Q 038200 37 PDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-GFMPNSY--------TFVSLFGSCAKTGCVERGG 107 (523)
Q Consensus 37 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~--------~~~~ll~~~~~~~~~~~a~ 107 (523)
+++|.++.+.- |....|..+.......-.++.|...|-+.... |++.-.. .-..=+.+ --|++++|.
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhh
Confidence 45555555443 33355665555555555555555555444321 2211000 00001111 125666666
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038200 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-----DLISWNSIVSGHVRSGDMSAAHELFDIMPER 182 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 182 (523)
+++-.+-+.. ..+..+.+.|++-.+.++++.-... -...|+.+...++....++.|.+.+..-..
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~- 824 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD- 824 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 6655544332 2344555556666555555543321 123555566666666666666655554432
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
. ...+.++.+..++++-..+-.. ++-+....-.+..++.+.|.-++|.+.|-+ .+. |. +.+.
T Consensus 825 -~---e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~ 886 (1189)
T KOG2041|consen 825 -T---ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVH 886 (1189)
T ss_pred -h---HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHH
Confidence 1 1233444444444443333322 334555556667777777777777665532 221 21 2344
Q ss_pred hhhhcCChHHHHHHHHhcCCCChHHHHH--------------HHHHHHhcCChHHHHHHHHHHHh
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNLVCWNA--------------MILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
.|...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|.+++.+|.+
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 5666677777777777665444332211 23344556666666666666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=62.67 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 54 CVNAVIKAYSNSCVPDQGVVFYLQMIKN--GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 54 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
....++..+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.++.+++.=...|+-||..++|.||+.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3344444444444555555555555443 12222334455555555555555555555555555555555555555555
Q ss_pred HHccCChHHHHHHHhhcC
Q 038200 132 YGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~ 149 (523)
+.+.|++..|.++..+|.
T Consensus 148 fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HhhcccHHHHHHHHHHHH
Confidence 555555555555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.14 Score=51.93 Aligned_cols=182 Identities=13% Similarity=0.080 Sum_probs=126.7
Q ss_pred HhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHH
Q 038200 30 HSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERG 106 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 106 (523)
.+.+.|+.++|..+++... ..|..+...+-..|...+..++|..+|++..+. .|+......+..++.+.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999998764 347778888889999999999999999999985 57788888899999999888766
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHccC----------ChHHHHHHHhhcCCCC-c-c---hHHHHHHHHHhcCCHHH
Q 038200 107 GMCHGLALKNGVDFELPVMNSLINMYGCFG----------AMDCARNMFVQMSPRD-L-I---SWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~-~-~---~~~~ll~~~~~~~~~~~ 171 (523)
.++--++-+. .+-+...+=++++.+...- -..-|.+.++.+.+.+ . . -.-.-+..+...|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5554444443 3336666666777665432 1334666666665433 1 1 11222334556788999
Q ss_pred HHHHHhc-----CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 038200 172 AHELFDI-----MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG 214 (523)
Q Consensus 172 a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 214 (523)
|..++.. ....+...-+--+..+...++|.+..++-.++...|
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9998832 222344444455667778888888888888888775
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00027 Score=48.68 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDP 429 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 429 (523)
++..|..+...+...|++++|+..|++.++. .+.+...|..+..++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777888888888888888888888753 2335667777777888888 68888888888888776
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00015 Score=49.78 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=28.4
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.|++++|.++|+++.+. .+-+...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666552 233455555566666666666666666666653
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.037 Score=50.84 Aligned_cols=268 Identities=12% Similarity=-0.041 Sum_probs=114.5
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHH
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHE 174 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~ 174 (523)
.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.++-. +.....+.-.-.++...++..+|.+
T Consensus 60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 3344555666666666665444 34445445555555555555544333322 1112222223333333444444444
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHhccccHHHHHHHHHHHHHcCCCC
Q 038200 175 LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGNDKTMASV-LTACGRSARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 175 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (523)
.++ +...| ....++..++....... +|...++..+ ..++...|+.+.|.++--...+... .
T Consensus 139 ~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~ 201 (486)
T KOG0550|consen 139 KLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T 201 (486)
T ss_pred Hhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c
Confidence 444 11111 11112222222222111 1333333332 2344566777777666665555431 1
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHH---------------HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC---------------WNAMILGHCIHGKPEEGIKLFTALVNGTVA 317 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 317 (523)
+......-..++.-.++.+.+...|++...-++.. |..-..-..+.|++..|.+.|.+.+...
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-- 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-- 279 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC--
Confidence 22111111223334456677777777665432221 1111222345566666666666665532
Q ss_pred CCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 318 GGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 318 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.++.|+...|.....+..+.|+.++|+.--+...+. .+. ...|..-..++...++|++|.+-+++..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123333444444444555555555555555554431 111 1111222233334455555555555544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0026 Score=50.66 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
....+...+...|++++|..+|+.+.... +-+...|..|..++...|++++|+..|.......+ -+...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33344444555566666666665555532 22334444555555555666666666655555442 24444444555555
Q ss_pred hcCChHHHHHHHHh
Q 038200 266 KCQKVEVAQRVFDS 279 (523)
Q Consensus 266 ~~~~~~~a~~~~~~ 279 (523)
..|+.+.|.+.|+.
T Consensus 115 ~lG~~~~A~~aF~~ 128 (157)
T PRK15363 115 ACDNVCYAIKALKA 128 (157)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0069 Score=59.81 Aligned_cols=137 Identities=11% Similarity=0.062 Sum_probs=98.1
Q ss_pred cCCCHHHHHHHHHHHhh--c---CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcC--------CChHHHHHHHHh
Q 038200 321 ISPDEITFIGVICACVR--A---ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGA--------ELTEEAEEILRK 386 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 386 (523)
.+.+...|...+++... . +....|..+|+++.+. .|+ ...|..+..++... ++...+.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45677888888887543 2 3478999999999973 555 44555544444221 223455555555
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 387 MPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..... ....+...+..+.......|++++|...++++++++| +...|..++.+|...|+.++|.+.+++..+.+
T Consensus 410 a~al~-~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALP-ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcc-cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43211 1233456677676666778999999999999999999 57899999999999999999999999987654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0047 Score=51.41 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
..+...+...|++++|...|++......-.+ ...++..+..+|...|++++|++.+++.... .+.....+..+...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~la~i 115 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHH
Confidence 3333444444555555555554443200000 1224444555555555555555555554432 01112223333333
Q ss_pred HH-------hcCCHH-------HHHHHHHHHhhcCCC
Q 038200 408 CR-------FQGAVA-------MVERLAKSFVDMDPQ 430 (523)
Q Consensus 408 ~~-------~~g~~~-------~a~~~~~~~~~~~p~ 430 (523)
+. ..|+++ +|..+++++.+.+|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33 455544 555566666666764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.028 Score=49.77 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.+...|.+.|.+..|..-++.+++.-|+ .+++...+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455688899999999999999987776 45677788899999999999999887664
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.004 Score=49.89 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=78.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
....-+...|++++|..+|+-+...+ .-+..-|..|..++...++++.|...|..+..++++||..+...+.+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d---~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD---FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 34455668999999999999877421 334556777777888899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHh
Q 038200 446 GQWEDVARVRELMKK 460 (523)
Q Consensus 446 g~~~~A~~~~~~m~~ 460 (523)
|+.+.|...|+...+
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998866
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=41.51 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=30.3
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhHHH
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67899999999999999999999999999986
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0026 Score=56.65 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=39.9
Q ss_pred HcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCCh
Q 038200 372 AGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 448 (523)
.+.|++++|...|+.++.....-.-....+..+..++...|+++.|...|+.+++..|++ +.++..++.+|...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555443210000001233344444555555555555555555544432 33334444455555555
Q ss_pred hHHHHHHHHHHh
Q 038200 449 EDVARVRELMKK 460 (523)
Q Consensus 449 ~~A~~~~~~m~~ 460 (523)
++|..+++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=50.38 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC-----CCCchHHHHH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS-----LKPNIILDTA 259 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 259 (523)
.+.+.++..+.-.+.+.-.+..+++.++...+-++.....+.+.-.+.||.+.|...|+...+.. +.....+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34456667777778888888888888887666677778888888888899988888888776542 2223333344
Q ss_pred HhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 260 LIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 260 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
....|.-.+++..|...|.++.. .++..-|.-..+..-.|+..+|++.++.|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44556667788888888877765 34455555555555578888888888888873
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0022 Score=53.59 Aligned_cols=97 Identities=9% Similarity=0.195 Sum_probs=74.6
Q ss_pred HHHHhcC--CCCChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 038200 173 HELFDIM--PERNVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS------------- 232 (523)
Q Consensus 173 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 232 (523)
...|+.. ...+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 34677778777777764 466777777888888889989999999999886542
Q ss_pred ---ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC
Q 038200 233 ---ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269 (523)
Q Consensus 233 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (523)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2456788999999999999999999999998877554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.018 Score=55.77 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-----
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI----- 399 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----- 399 (523)
..+...+..-+.+...+..|-++|.+|-+ ...+++.....+++++|..+-++..+ +.||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaq 812 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQ 812 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc----ccccccchHHH
Confidence 34555555555566677777888887754 23467777888888888888887775 344421
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 400 ------MWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 400 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
-|...-.+|.+.|+..+|.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233456666777777777776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00091 Score=60.81 Aligned_cols=271 Identities=13% Similarity=0.026 Sum_probs=150.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc----cHHHHHHHHHccCCchHHHHHHHHHH--H--hCCC-CCchHHHHHHH
Q 038200 60 KAYSNSCVPDQGVVFYLQMIKNGFMPNSY----TFVSLFGSCAKTGCVERGGMCHGLAL--K--NGVD-FELPVMNSLIN 130 (523)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 130 (523)
.-+++.|+....+.+|+..++.| .-|.. .|.-|.++|.-.+++++|++++..=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34788899999999999888876 33333 45556666666677777777654321 1 1100 01122233334
Q ss_pred HHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC-----------
Q 038200 131 MYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN----------- 199 (523)
Q Consensus 131 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~----------- 199 (523)
.+--.|.+++|...-.+ .++-|.++=+++. ....+..+...|...|+
T Consensus 104 tlKv~G~fdeA~~cc~r--------------------hLd~areLgDrv~--e~RAlYNlgnvYhakGk~~g~~~pee~g 161 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFR--------------------HLDFARELGDRVL--ESRALYNLGNVYHAKGKCTGLEAPEEKG 161 (639)
T ss_pred hhhhhcccchHHHHHHH--------------------HhHHHHHHhHHHh--hhHHHhhhhhhhhhcccccCCCChhhcc
Confidence 44444555555433211 1111111111111 11222223333332221
Q ss_pred ---------chHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCC-CchHHHHHH
Q 038200 200 ---------PGCSLKLFREM----MKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVR----TSLK-PNIILDTAL 260 (523)
Q Consensus 200 ---------~~~a~~~~~~m----~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l 260 (523)
++.|.++|.+= .+.|-. .--..|..|.+.|.-.|+++.|+..++.-+. -|-. .....+..|
T Consensus 162 ~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNl 241 (639)
T KOG1130|consen 162 AFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNL 241 (639)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhccc
Confidence 22334444322 121100 1123566677777778899999887765433 2221 134677788
Q ss_pred hhhhhhcCChHHHHHHHHhcC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSMA-------DR--NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
.+++.-.|+++.|.+.|+... .+ ...+.-+|...|.-..++.+|+.++.+-..--..-.+..-....+.+|
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSL 321 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSL 321 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 899999999999999887642 22 234566677888888888889887765433110000022345678888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhH
Q 038200 332 ICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..++...|..++|+.+.+...+
T Consensus 322 gna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHH
Confidence 8899999999999887776554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=49.08 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=128.1
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+...|..-+.--...|+.+.+.-+|+++.-| =...|-..+.-....|+.+-|..++....+-. ++-.+.+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-----~k~~~~i~L 370 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-----VKKTPIIHL 370 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----CCCCcHHHH
Confidence 4567888888888999999999999998664 23455555555556699999988887776654 222222222
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-HHHHHHHHHHHcCCChHHHH---HHHHhCCCCCCCCCchHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNF-AHYWCMANLYAGAELTEEAE---EILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.-...+-..|+++.|..+++.+.+. . |+. ..-..-+....+.|..+.+. +++................+....
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFA 447 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHH
Confidence 2222344578999999999999985 4 543 33333456667888888888 666666542211111222223333
Q ss_pred H-HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCCh
Q 038200 406 S-LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQW 448 (523)
Q Consensus 406 ~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 448 (523)
. .+...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 3 355678999999999999999999999999999988877643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0083 Score=46.03 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=58.4
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC--chHHHHHHhhhhh
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYS 265 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 265 (523)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777777665443 2345556666677777777777777666542210 1122222333455
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGH 295 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 295 (523)
..|+.++|++.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665544433333444433333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.13 Score=47.07 Aligned_cols=276 Identities=13% Similarity=0.072 Sum_probs=132.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH--HccCChHHHHHHHhhcCC-CCcc--hHHHHHHHHHhcCCHHHHHH
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMY--GCFGAMDCARNMFVQMSP-RDLI--SWNSIVSGHVRSGDMSAAHE 174 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~ll~~~~~~~~~~~a~~ 174 (523)
.|+-..|.+.-.+..+. +..|..-.-.|+.+. .-.|+++.|.+-|+.|.. |... -...+.-.-.+.|+.+.|.+
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 34555555544443321 222333333333332 235666666666666652 2111 11122222235566666666
Q ss_pred HHhcCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---ccccHHHHHHHHHHH
Q 038200 175 LFDIMPE--RN-VVSWNIMISGYSKSGNPGCSLKLFREMMKSG-FRGNDK--TMASVLTACG---RSARFNEGRSVHGYT 245 (523)
Q Consensus 175 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~---~~~~~~~a~~~~~~~ 245 (523)
.-++.-. |. .-.+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-.+.
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 5555432 21 2345566666667777777777666554432 233332 1122222211 112344455444444
Q ss_pred HHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 246 VRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 246 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
.+. .|+. ..-..-..++.+.|+..++-.+++.+-+ |.+..+.. ..+.+.|+ .+..-+++..+.. .++
T Consensus 256 ~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~----slk 325 (531)
T COG3898 256 NKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRAKKLE----SLK 325 (531)
T ss_pred hhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHH----hcC
Confidence 442 3332 2222334566667777777777776633 34333322 22233343 2333333322211 034
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-CCChHHHHHHHHhCCC
Q 038200 323 PD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG-AELTEEAEEILRKMPE 389 (523)
Q Consensus 323 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 389 (523)
|| ..+...+..+....|++..|..--+... ...|....|..|.+.-.. .|+-.++...+.+.+.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 44 3455555666666777776666555554 345666677666665543 4777777777766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0075 Score=53.78 Aligned_cols=107 Identities=7% Similarity=0.057 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
..|...+..+.+.|++++|...|+.+.+.|.-.+ .+..+..+...|...|++++|...|+.+.....+.+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555667999999999999998532211 135677789999999999999999999985422222234555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
...+...|+.+.|..+++.+++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6778889999999999999999999765
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.048 Score=50.65 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=104.7
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMADR-------NLVCWNAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..++-+|....+++..+++++.+... ....-....-++-+ .|+.++|++++..+.... ..+++.+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~ 219 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDT 219 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHH
Confidence 34555688888888888888888653 12222334455556 789999999998865555 5678888
Q ss_pred HHHHHHHHhh---------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChH----HHHHHH---Hh-CCCC
Q 038200 328 FIGVICACVR---------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTE----EAEEIL---RK-MPED 390 (523)
Q Consensus 328 ~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~~~~ 390 (523)
|..+.+.|-+ ....++|...|.+.-+ +.|+..+--.++..+...|... +..++- .. ..++
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 8888776642 2246778888877654 4455443333344444444322 222222 11 1111
Q ss_pred -CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 391 -NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 391 -~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
...-..+-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11234456667778888889999999999999999988753
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.013 Score=50.33 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCcchHHHH-----HHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----RDLISWNSI-----VSGH 163 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l-----l~~~ 163 (523)
++..+...+.+.-....+..+++...+.++.....|+++-.+.||.+.|...|+...+ -|....+.+ ...|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 3333334444444444444444444444444444444444555555555555543321 122222221 2224
Q ss_pred HhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 038200 164 VRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKS 213 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 213 (523)
.-.+++..|...|++++. .|+..-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445566666666666554 23344444344444456777777777777764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0039 Score=58.98 Aligned_cols=114 Identities=11% Similarity=0.017 Sum_probs=61.9
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC-C-----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD-R-----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
+......+++......+++.+..++.+... + -..|..++|..|...|..+.++.+++.=...| +-||..
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-----iF~D~~ 139 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-----IFPDNF 139 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-----cCCChh
Confidence 333444444444444445555555444432 1 12234466666666666666666666666666 666666
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
+++.|+..+.+.|++..|.++...|... ..-.++.++..-+.++.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH
Confidence 6666666666666666666666665554 44444444444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.016 Score=46.90 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCccCCc
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK-----KRRMGRMPG 468 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 468 (523)
....++..+...|+++.|.+.++.+...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445667778899999999999999999999999999999999999999999999999875 346666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.21 Score=46.12 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=68.4
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-.++... . -++.-|..++.+|.+.|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-------KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-------KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-------CCCCChHHHHHHHHHCCC
Confidence 44445567777777777777667777777777777777777766654321 1 123566677777777777
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
..+|..+..++.. ..-+..|.++|++.+|.+.-.+..
T Consensus 253 ~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 253 KKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7777777666321 334566777777777766655544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.031 Score=48.05 Aligned_cols=161 Identities=12% Similarity=0.099 Sum_probs=84.6
Q ss_pred hhhhcCChHHHHHHHHhcCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMAD--R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICA 334 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~ 334 (523)
.+...|++.+|...|+.+.. | .....-.++.++.+.|+++.|...+++.+... |+. ..+...+.+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-------P~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-------PNSPKADYALYMLG 86 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--------TT-TTHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCCcchhhHHHHHH
Confidence 34445555555555555533 1 11234455666667777777777777766643 321 112222222
Q ss_pred Hhh-------------cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 335 CVR-------------AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 335 ~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
.+. .+...+|... +..++.-|-.+....+|...+..+.+ .. ...-
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~-----~l-a~~e 144 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRN-----RL-AEHE 144 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHH-----HH-HHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHH-----HH-HHHH
Confidence 111 1112223333 33444445455555566555554441 11 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 452 (523)
..+...|.+.|.+..|..-++.+++.-|+++ .+...++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2345668889999999999999999888754 45667888898988887544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.002 Score=44.85 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=49.0
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
-..|.+.+++++|.++++.+... .+.+...+......+...|++++|.+.++.+.+..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL---DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35677888888888888888853 2334556666677788888888888888888888887665443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=45.73 Aligned_cols=87 Identities=8% Similarity=-0.009 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC----------CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGT----------VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (523)
.++.++|.++++.|+.+....+++..-.-. ..+....|+..+..+++.+|+..+++..|+++++.+.+.|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 455556666666666666655554432211 1123367888888888888888889999999999888888
Q ss_pred CCCCChHHHHHHHHHHH
Q 038200 356 KIKPNFAHYWCMANLYA 372 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~ 372 (523)
+++.+...|..|+.-..
T Consensus 83 ~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 88888888888776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0035 Score=58.84 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
...++.+..+|...|++++|...++++++++|++.. +|..++.+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555442 255555555555555555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=40.03 Aligned_cols=41 Identities=27% Similarity=0.454 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
++..+..++...|++++|+++++++++..|+++.++..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888999999999999999999999999988887764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.017 Score=45.26 Aligned_cols=121 Identities=14% Similarity=0.043 Sum_probs=79.2
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh-HHHHHHHHHhc
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR-YQFLLNVYAVA 445 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~ 445 (523)
-.....+.|++++|.+.|+.+..+-..-+-....-..++.++...|+++.|...+++++++.|.++.+ |.....+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 34445677899999999998886522112234556677888999999999999999999999986542 33334443332
Q ss_pred CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCccccc
Q 038200 446 GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
...+ ..+..+. +...++. ...+++..++++++.-|++..+..
T Consensus 96 ~~~~---~~~~~~~--~~drD~~------------------~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 96 EQDE---GSLQSFF--RSDRDPT------------------PARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHhh---hHHhhhc--ccccCcH------------------HHHHHHHHHHHHHHHCcCChhHHH
Confidence 2211 2222222 2333332 456799999999999998887655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.55 Score=46.54 Aligned_cols=173 Identities=10% Similarity=-0.042 Sum_probs=98.3
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCC-CCcccHHHHHH----------HHHhCCCchHHHHHHHHHHHCCCCCCc
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIK----------AYSNSCVPDQGVVFYLQMIKNGFMPNS 87 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~----------~~~~~~~~~~a~~~~~~m~~~~~~p~~ 87 (523)
|+|.+|..|...-...-.++-|+..|-+... +.+..-..|-. .-+--|++++|.++|-.|-+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 8899999999888877888888888876542 22211111111 1122488999999988877653
Q ss_pred ccHHHHHHHHHccCCchHHHHHHHHHHHhCC--CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 88 YTFVSLFGSCAKTGCVERGGMCHGLALKNGV--DFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 88 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
..+....+.|++-.+.++++.--. +. ..-...++.+...+.....+++|.+.+..-.. -...+.++.+
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYR 834 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHH
Confidence 235556667777766666543100 00 01124566677777776777777776665421 1123344444
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
..++++-+.+-..+++ +....-.+...+...|.-++|.+.|
T Consensus 835 le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence 4555555555555544 2333444555555556555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.38 Score=44.41 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
.+.+..+.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... .+ .| .-|..++
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-----sP--IGyepFv 244 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS-KK-----SP--IGYEPFV 244 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC-----CC--CChHHHH
Confidence 35566677777888887777665444 44 7888899999999999999988887553 21 22 5567788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.+|...|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8999999999999888772 2256688899999999998765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.3 Score=42.00 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMASVLTACGRSARFNEGRSVHGYTVRT 248 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 248 (523)
.....+...|++.+|...|+.+...-.. --......++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444556666777777777666654211 11223445555666666666666666666654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=52.82 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
..++..|.-+|.+.+++.+|++.-.+.++. -+++.-.+..-..++...|+++.|+..|+++.+++|+|-.+-..|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLEL---DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 356777889999999999999999999865 35567777777889999999999999999999999999888888888
Q ss_pred HHHhcCChhH-HHHHHHHHHhC
Q 038200 441 VYAVAGQWED-VARVRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~-A~~~~~~m~~~ 461 (523)
+-.+..++.+ ..++|..|..+
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 8877776655 47888888664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0039 Score=44.03 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDM----DPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.+++.+...+...|++++|+..+++++++ +++ ...++..++.+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666777777788777777777752 222 245777888888888888888888887643
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.072 Score=47.21 Aligned_cols=105 Identities=15% Similarity=0.035 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CChHHHHHHHHhCCCCCCCCCchH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---ELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
+-|...|..|..+|...|+++.|..-|.+..+. -.+++..+..+..++... ....++.++|+++... -+-|.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---D~~~i 227 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---DPANI 227 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc---CCccH
Confidence 345678888888888888888888888888773 444566666666655432 2346788888888853 13344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
.....+...+...|++.+|...++.+.+..|.+
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 555555567888888888888888888877654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.15 Score=49.78 Aligned_cols=230 Identities=14% Similarity=0.120 Sum_probs=108.9
Q ss_pred HHHHHHHHHccCCch--HHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 038200 90 FVSLFGSCAKTGCVE--RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 167 (523)
++..-.+|.+.++.. +...-++++.+.|-.|+... +...++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 444444554444433 22333555666666565533 33445666777777766655 45
Q ss_pred CHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHhccccHHHHHHHHH-
Q 038200 168 DMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS--GF-RGNDKTMASVLTACGRSARFNEGRSVHG- 243 (523)
Q Consensus 168 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~- 243 (523)
.-..|.++|..|.- -....-+...|..++-..+.++--+. ++ +|. +....+...|+.++|..+..
T Consensus 660 ~enRAlEmyTDlRM------FD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d 728 (1081)
T KOG1538|consen 660 HENRALEMYTDLRM------FDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGD 728 (1081)
T ss_pred chhhHHHHHHHHHH------HHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhc
Confidence 55556655555431 11223344444444433333221110 11 111 12233344455555444321
Q ss_pred -----HHHHcCC---CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 244 -----YTVRTSL---KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 244 -----~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
-+.+.+- ..+..+...+...+.+...+.-|-++|.+|-. ..++++.....++|++|..+-++..+
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe-- 801 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPE-- 801 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCcc--
Confidence 1111111 11233444444444455556666666666643 12345556666777777766665444
Q ss_pred CCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 316 VAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 316 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
..||. |....+-++...++++|.+ +|.++|+-.+|.++++++.
T Consensus 802 -----~~~dV--y~pyaqwLAE~DrFeEAqk-----------------------AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 802 -----FKDDV--YMPYAQWLAENDRFEEAQK-----------------------AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred -----ccccc--cchHHHHhhhhhhHHHHHH-----------------------HHHHhcchHHHHHHHHHhh
Confidence 33432 2233333444444444433 4556677777777777765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.044 Score=44.28 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH----hcCCCCCh
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID----FYKIKPNF 361 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 361 (523)
.....++..+...|++++|..+...+.... +-+...+..+|.++...|+...|.++|+++.. ..|+.|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 355667778888999999999999999954 44678999999999999999999999988754 35888887
Q ss_pred HHHH
Q 038200 362 AHYW 365 (523)
Q Consensus 362 ~~~~ 365 (523)
.+-.
T Consensus 137 ~~~~ 140 (146)
T PF03704_consen 137 ETRA 140 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.26 Score=45.97 Aligned_cols=90 Identities=8% Similarity=0.025 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC-------ChhHHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038200 158 SIVSGHVRSGDMSAAHELFDIMPER-------NVVSWNIMISGYSK---SGNPGCSLKLFREMMKSGFRGNDKTMASVLT 227 (523)
Q Consensus 158 ~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 227 (523)
.++-+|....+++..+++++.+... ....-...+-++-+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444567777777777777777652 11222233445556 7888888888888665556777788887776
Q ss_pred HHhc---------cccHHHHHHHHHHHHH
Q 038200 228 ACGR---------SARFNEGRSVHGYTVR 247 (523)
Q Consensus 228 ~~~~---------~~~~~~a~~~~~~~~~ 247 (523)
.|-. ....++|...|.+.-+
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 6532 1234555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.059 Score=51.06 Aligned_cols=207 Identities=12% Similarity=0.074 Sum_probs=109.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
.+|.-..+..+...-+++-++..+ +.||-.+.-.++ +-.......++.++|++..+. ....+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe-------i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-----gE~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE-------INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-----GEASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-------hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-----HHHhhchhh-
Confidence 344444555666666666666666 456543333222 222345577888888877663 111111000
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 447 (523)
.....|. .++....+ ...+-..+-..+..++.+.|+.++|.+.++.+.+..|. +..+...|+.+|...++
T Consensus 239 ~~~~~g~------~~e~~~~R--dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~ 310 (539)
T PF04184_consen 239 FLQHHGH------FWEAWHRR--DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA 310 (539)
T ss_pred hhhcccc------hhhhhhcc--ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC
Confidence 0001111 11111110 02233333345566677778888888888888765553 44577778888888888
Q ss_pred hhHHHHHHHHHHhCCCccCCceeEEEe----CCeEEEEecC----C---CCchHHHHHHHHHHhcccCCccccc-ccccc
Q 038200 448 WEDVARVRELMKKRRMGRMPGCRLVDL----KEVVEKLKVG----H---FWRGGMKEEVNKMMECRQSRSLATV-SKQLP 515 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~~~~~~~----~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~ 515 (523)
+.++..++.+-.+...++...+++... ......|..+ . +....+++.+.+.++-+|+-+.=+. -+.++
T Consensus 311 Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li 390 (539)
T PF04184_consen 311 YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI 390 (539)
T ss_pred HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC
Confidence 888888877765544444444332111 1111112111 1 2335588999999999999876655 44444
Q ss_pred ccc
Q 038200 516 WHK 518 (523)
Q Consensus 516 ~~~ 518 (523)
+.|
T Consensus 391 lPP 393 (539)
T PF04184_consen 391 LPP 393 (539)
T ss_pred CCh
Confidence 544
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.14 Score=43.75 Aligned_cols=206 Identities=11% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC--hHHHHHHHHHHHhc
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN--LVCWNAMILGHCIH 298 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~ 298 (523)
.|.....+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++.+-+ +..|+-....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4555566666777777777666555432 111222221 1122444444455554422 22455555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----CCCChHHHHHHHHHHHcC
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK----IKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 374 (523)
|..+.|-..+++.-+. ....++++|+++|++...... ...-...|..+.+.|.+.
T Consensus 105 GspdtAAmaleKAak~---------------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA---------------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred CCcchHHHHHHHHHHH---------------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 6666665555544331 223445555666555443211 111234556666777888
Q ss_pred CChHHHHHHHHhCCCCC--CCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCChhhHHHHHHHHHhcCC
Q 038200 375 ELTEEAEEILRKMPEDN--DNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD----MDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~ 447 (523)
.++++|-..+.+-.... ..-.++ -..+...+-.+....++..|+..++.-.+ .+|++..+...|+.+|- .|+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCC
Confidence 88888776665433110 001111 12344555556667789999999988655 34667778888888874 578
Q ss_pred hhHHHHHHH
Q 038200 448 WEDVARVRE 456 (523)
Q Consensus 448 ~~~A~~~~~ 456 (523)
.+++.++..
T Consensus 243 ~E~~~kvl~ 251 (308)
T KOG1585|consen 243 IEEIKKVLS 251 (308)
T ss_pred HHHHHHHHc
Confidence 787776644
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.3 Score=37.41 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=90.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+.-.|..++..++..+.... .+..-++.+|.-...+-+-+-..+.++.+-+-|.+.| +
T Consensus 12 ~ildG~V~qGveii~k~v~S--------sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C 69 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--------SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------C 69 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--------S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------
T ss_pred HHHhchHHHHHHHHHHHcCc--------CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------h
Confidence 45578889999999888774 3555677777666666677777788888766544333 3
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
|+.......+-.+- .+...+...+.....+|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.++
T Consensus 70 ~NlKrVi~C~~~~n-------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 70 GNLKRVIECYAKRN-------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp S-THHHHHHHHHTT----------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHhc-------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 33344333333332 12223445566778889999999999888765555888999999999999999999999
Q ss_pred HHHHHhCCCc
Q 038200 455 RELMKKRRMG 464 (523)
Q Consensus 455 ~~~m~~~~~~ 464 (523)
+.+.-++|++
T Consensus 143 l~~ACekG~k 152 (161)
T PF09205_consen 143 LKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHHhchH
Confidence 9999988874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.033 Score=42.33 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=53.8
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-C---ChhhHHHHHHHHHhc
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-Q---DFSRYQFLLNVYAVA 445 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~ 445 (523)
++...|+++.|++.|.+.+.. .+.....||.-..+++-+|+.++|..-+++++++.- . -..+|..-+..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 455666666666666666532 223455666666666666666666666666666432 2 123455556666666
Q ss_pred CChhHHHHHHHHHHhCC
Q 038200 446 GQWEDVARVRELMKKRR 462 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~ 462 (523)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 77666666666665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0086 Score=42.26 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
+++.+...|...|++++|+..|++..+....-+.-.|+ ..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666666667777777777666665421000001122 34566666667777777777777766554
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.5 Score=44.61 Aligned_cols=173 Identities=10% Similarity=0.000 Sum_probs=109.6
Q ss_pred HHHHHhhccCCchhHHHHhccCCCCCccc----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNPGTFC----VNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG 101 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 101 (523)
.-++.+.+...++-|..+-.... -+... .......+-+.|++++|.+-|-+-... +.|. .++.-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 34455555566666666655422 12222 222334456778899888887766542 2332 3455555555
Q ss_pred CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCc-chHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038200 102 CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDL-ISWNSIVSGHVRSGDMSAAHELFDIMP 180 (523)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 180 (523)
+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+....... .-....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 666666778888888877 777778899999999999998888887762221 135566677777777777766655554
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 181 ERNVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 181 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
. +...... .+-..+++++|++++..|
T Consensus 491 ~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred c-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3 3333333 344578899999888765
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.5 Score=44.16 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=189.6
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHH------hhccCCchhHHHHhccCC------CC-----------CcccHHHHHHH
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKH------SADFGSPDYTVLVFKCIN------NP-----------GTFCVNAVIKA 61 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~------~~-----------~~~~~~~ll~~ 61 (523)
+.|.+.+...+-+ -.|.....|+++ +.+.-++++-.++...+. .+ ...+-..+++-
T Consensus 368 ~aV~~CI~aA~~e-f~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~R 446 (829)
T KOG2280|consen 368 KAVDDCIEAACDE-FQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDR 446 (829)
T ss_pred HHHHHHHHHhhhc-cCHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHH
Confidence 3566677777777 778888888864 234456666655554432 11 11234467788
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc--hHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChH
Q 038200 62 YSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV--ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMD 139 (523)
Q Consensus 62 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 139 (523)
+...+.+..|+++-+.+...-..- ...|.....-+.+..+. +++.+..++=+..... .-..|..+..-...+|+.+
T Consensus 447 l~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~ 524 (829)
T KOG2280|consen 447 LVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFE 524 (829)
T ss_pred HHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHH
Confidence 888999999999988886432222 45566666666554322 2233333322222223 4456777777777899999
Q ss_pred HHHHHHhhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038200 140 CARNMFVQMSPR--------DLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 140 ~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
.|..+++.=+.. +..-+...+.-....||.+....++-.+.+. +...+ +....+...|..+|.+.
T Consensus 525 LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 525 LARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPLALSLYRQF 598 (829)
T ss_pred HHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchhhhHHHHHH
Confidence 999988764321 2233444555556666666666665554421 11111 11223445555666555
Q ss_pred HHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHH-HH-cCCCCchHHHHHHhhhhhhcCChHHH----------HHHHH
Q 038200 211 MKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYT-VR-TSLKPNIILDTALIDLYSKCQKVEVA----------QRVFD 278 (523)
Q Consensus 211 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~ 278 (523)
.+.. |..+ +-..|....+...+..+.-+- .. ..+.+-........+.+.+.....-. +.+.+
T Consensus 599 ~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~ 672 (829)
T KOG2280|consen 599 MRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQR 672 (829)
T ss_pred HHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4421 1111 111122222222111111110 00 00111111222223333333221111 11111
Q ss_pred hcCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 279 SMAD-----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 279 ~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
.+.. -.-.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+..+
T Consensus 673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---------ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---------IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---------CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 1111 011233444555566677777766655442 3666666666677777777766555444332
Q ss_pred hcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
++.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.+..-
T Consensus 743 ------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~----l~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 ------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG----LQ-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ------CCCCchhHHHHHHhcccHHHHhhhhhccCC----hH-------HHHHHHHHhccHHHHHHHHH
Confidence 234455567777777777777777777763 22 23445666666666655543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.028 Score=48.82 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=83.9
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-----------
Q 038200 40 TVLVFKCIN--NPGTFCVNAVIKAYSNS-----CVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG----------- 101 (523)
Q Consensus 40 A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 101 (523)
.++.|...+ ++|..+|-..+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 57888898888877643 566667777899999999999999999999876532
Q ss_pred -----CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh-HHHHHHHhhc
Q 038200 102 -----CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM-DCARNMFVQM 148 (523)
Q Consensus 102 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 148 (523)
+-+-+..++++|...|+.||..+-..|++++.+.+-. .+..+++-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2355788999999999999999999999999987743 3444444444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.093 Score=46.95 Aligned_cols=162 Identities=12% Similarity=0.040 Sum_probs=118.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHH----HH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCM----AN 369 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~ 369 (523)
..-.|+.-+|...|+++.+ --| |...+...=.+|...|+.+.-...++++.. ...|+...|..+ .-
T Consensus 113 ~~~~g~~h~a~~~wdklL~-------d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLD-------DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAF 183 (491)
T ss_pred hhccccccHHHHHHHHHHH-------hCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHh
Confidence 3468899999999999988 444 556677777788999999999999998887 456666555443 44
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhc
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----DFSRYQFLLNVYAVA 445 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~ 445 (523)
++..+|-+++|++.-++..+. -+.|.-...++...+-..|+.+++.++..+-...-.. -..-|...+-.+...
T Consensus 184 gL~E~g~y~dAEk~A~ralqi---N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQI---NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred hHHHhccchhHHHHHHhhccC---CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 556899999999999998864 2456666677777788889999998887765442211 123455666677788
Q ss_pred CChhHHHHHHHHHHhCCCccCCc
Q 038200 446 GQWEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+.++.|+++|++=.-+...++.+
T Consensus 261 aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 261 AEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred cchhHHHHHHHHHHHHHhhccch
Confidence 99999999999766555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.61 Score=45.91 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=101.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----HHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCCh
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----ITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNF 361 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 361 (523)
++....=.|+-+.+++++.+..+.+ ++.-.. ..|...+..++. ....+.|.++++.+.+. . |+.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~----~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s 266 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSE----NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNS 266 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccC----CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCc
Confidence 3444444566666666666554432 111111 123333333332 45778899999999884 3 454
Q ss_pred HHH-HHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 362 AHY-WCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 362 ~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..| -.-.+.+...|++++|++.|++........+ .....+.-+...+....++++|...+..+.+...-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 444 3445667788999999999998764221111 23445555666778889999999999999987665555666554
Q ss_pred -HHHHhcCCh-------hHHHHHHHHHHh
Q 038200 440 -NVYAVAGQW-------EDVARVRELMKK 460 (523)
Q Consensus 440 -~~~~~~g~~-------~~A~~~~~~m~~ 460 (523)
-++...|+. ++|.++|.+.-.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445567888 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.058 Score=47.13 Aligned_cols=58 Identities=16% Similarity=0.012 Sum_probs=29.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|..++...|+++.|..+|..+.+-.|+ -|+.+.-|+.+..+.|+.++|...|+++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444455555555555555555543332 3344555555555555555555555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.17 Score=47.98 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=47.5
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
..+|.+..++..+. -+.|+.....+..+....|+++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAvel---d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDI---TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555555543 133445544455555555556666666666666666666666666666666666666666666
Q ss_pred HHHh
Q 038200 457 LMKK 460 (523)
Q Consensus 457 ~m~~ 460 (523)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 5433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.32 Score=38.30 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=31.5
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
..+.|++++|.+.|+.+...+...| .......|+.+|.+.|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666666433322 233444566666666666666666666554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.79 Score=40.74 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=77.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
.....|++.+|...|...... .+-+...-..++.+|...|+.+.|..++..+..... .........-+..+.+..+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHhc
Confidence 345677888888888887763 333456666778888888888888888888874311 1111111111222222222
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 219 ~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 219 TPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222222 222334678888888888888888899988888777775543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.15 Score=44.66 Aligned_cols=109 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC-CChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIK-PNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
..|+.-+.. .+.|++..|...|....+.|.-. -.+..+--|..++...|++++|..+|..+.+.-...+--+..+..+
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 356665554 45677999999999998853111 1234555688999999999999999988875422222224566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.....+.|+.++|...++++.+.-|+.+.+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7788899999999999999999888765443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.43 Score=42.94 Aligned_cols=182 Identities=11% Similarity=0.071 Sum_probs=124.8
Q ss_pred hcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH----HHHHHHhhc
Q 038200 266 KCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI----GVICACVRA 338 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~----~ll~~~~~~ 338 (523)
..|+..+|-..++++.+ .|..++...=.+|.-.|+.+.-...++++... ..||...|. .+.-++...
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~------wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK------WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc------cCCCCcHHHHHHHHHHhhHHHh
Confidence 35777888788888865 47788998999999999999999999998876 245543332 333455688
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHHHHHHHHHHhcCCH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 414 (523)
|-+++|.+.-++..+. .+.|.-.-.++...+-..|+..++.++..+-... .... ...|....-.+...+.+
T Consensus 189 g~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~---Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD---WRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred ccchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc---hhhhhHHHhhhhHHHHHhhhcccch
Confidence 9999999999888763 3445666677888899999999999998887642 2211 22333444455667899
Q ss_pred HHHHHHHHHHh--hcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 415 AMVERLAKSFV--DMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 415 ~~a~~~~~~~~--~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+.|+++|+.-+ +++.+|. ..|..+-.+..+...|.+...+-+.+
T Consensus 264 e~aleIyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 264 EKALEIYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred hHHHHHHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 99999997644 3555554 33344444455555555554444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=49.25 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh----HHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF----AHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|+.++|++.+++.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666666655 23442 235666666666666666666666666
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=38.45 Aligned_cols=214 Identities=13% Similarity=0.105 Sum_probs=119.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
.|..-..+|....++++|-..+.+..+. ...+...|. ....++.|.-+.+++.+. +--...|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3555566788888888888877766532 122222111 223345555555555542 223455666777888
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
.+|..+.|-..+++..+ ....-++++|+++|++...--..+...+--...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 88888777666665422 123456667777776654421000001111223444555667777777776
Q ss_pred HHHHHhhHh---cCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 346 KYFRQMIDF---YKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM-SFESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 346 ~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
..+.+-..- ..--++ -..|-..|-.|.-..++..|.+.+++--+.+.-. +-+..+...|+.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 555543211 011122 2345566667777789999999999844322112 23567777888776 56777777666
Q ss_pred HH
Q 038200 421 AK 422 (523)
Q Consensus 421 ~~ 422 (523)
+.
T Consensus 250 l~ 251 (308)
T KOG1585|consen 250 LS 251 (308)
T ss_pred Hc
Confidence 53
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.15 Score=39.62 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc-
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMM---------------KSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT- 248 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 248 (523)
.++.++|.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++.+...+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555555555555555555554331 1123455666666666666666666666666655543
Q ss_pred CCCCchHHHHHHhh
Q 038200 249 SLKPNIILDTALID 262 (523)
Q Consensus 249 ~~~~~~~~~~~l~~ 262 (523)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444555555554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.66 Score=42.28 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=21.2
Q ss_pred HhcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccccHHHHH
Q 038200 195 SKSGNPGCSLKLFREMMKSG--FRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
....+.++|+..|.+-..+- ...-..+|..+..+.++.|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 34455666666555544321 1112234455555555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.48 Score=45.94 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC
Q 038200 60 KAYSNSCVPDQGVVFYL--QMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA 137 (523)
Q Consensus 60 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 137 (523)
....-+++++.+.+..+ .+.. .++ ....+.++..+-+.|..+.|+++... . ..-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 33455667777665554 1221 112 33366667777777777777666322 2 223445566677
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 038200 138 MDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG 217 (523)
Q Consensus 138 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 217 (523)
++.|.++.++.. +...|..|.....+.|+++-|+..|.+... |..|+-.|.-.|+.++..++.+.....|
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 777766666554 444666666666666666666666666543 4445555566666665555555555544
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVH 242 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~ 242 (523)
-++....++.-.|+.++..+++
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHH
Confidence 1333334444445555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.4 Score=38.39 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+...|.+.|.+..|..-++.+++.-|+. ...+..+..+|.+.|..++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4456788888888888888888865553 345666778888899988888876655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.4 Score=38.31 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=53.9
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCC--CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHh
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKI--KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRF 410 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 410 (523)
.+...|+++.+...+.+.... .. ......+......+...++.+.+...+.+.... ... ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHH
Confidence 344455555555555554221 10 011222222233344445555555555554432 111 23344444444555
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
.++.+.+...+.......|.....+..+...+...|.++++...+.+..
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555433344444444444444555555555443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.7 Score=46.41 Aligned_cols=316 Identities=9% Similarity=0.001 Sum_probs=176.4
Q ss_pred HHHHHHHccCChHHHHHHHhhc----CCC--CcchHHHHHHHHHhcCCHHHHHHHHhc-CCCCChhHHHHHHHHHHhcCC
Q 038200 127 SLINMYGCFGAMDCARNMFVQM----SPR--DLISWNSIVSGHVRSGDMSAAHELFDI-MPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 127 ~l~~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~ 199 (523)
.+..+-.+++.+..|...+++- .+. ....|-.+...|+..+++|....+... ...|+. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4555666788999999999883 222 122344444488888888888777763 333332 234445677899
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-HHHHHHhhhhhhcCChHHHHHHHH
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNI-ILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
+..|...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+.. ..++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999874 3446778888888888888877776555444332 2222 223333444467777777777666
Q ss_pred hcCCCChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHhCCCCCCCcCCC---------HHHHHHHHHHHhhcCcHHHHH
Q 038200 279 SMADRNLVCWNAM--ILGHCIHG--KPEEGIKLFTALVNGTVAGGSISPD---------EITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 279 ~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~p~---------~~~~~~ll~~~~~~~~~~~a~ 345 (523)
..+..+|... +....+.. +.-.-.+..+.+.+.- +.|- ...|..++....- .
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~-----i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~ 1607 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV-----IENLSACSIEGSYVRSYEILMKLHLL-------L 1607 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh-----hhhHHHhhccchHHHHHHHHHHHHHH-------H
Confidence 4445555444 22222222 2222223333333321 1110 0122222221111 0
Q ss_pred HHHHHhhHhcCCCCC------hHHHHHHHHHHHcCCChHHHHHHHHh----CCCCCCCCC-chHHHHHHHHHHHHhcCCH
Q 038200 346 KYFRQMIDFYKIKPN------FAHYWCMANLYAGAELTEEAEEILRK----MPEDNDNMS-FESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 414 (523)
++-+......++.++ ..-|..-+..-....+..+-+--+++ ... +.+.. --..+|......++..|.+
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~-~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRM-RSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhc-cccccchhHHHHHHHHHHHHhcccH
Confidence 111111111122222 12222111111111111221111111 110 10112 2356888888899999999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCcc
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGR 465 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 465 (523)
+.|...+-.+.+..+ +.++...+..+...|+...|+.++++....+.+.
T Consensus 1687 q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999999888888765 5689999999999999999999999988765533
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.1 Score=42.81 Aligned_cols=160 Identities=7% Similarity=0.020 Sum_probs=107.3
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHh---------hcCcHHHHHHHH
Q 038200 286 VCW--NAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACV---------RAELLTEGRKYF 348 (523)
Q Consensus 286 ~~~--~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~ 348 (523)
..| ..++.+.... ...+.|+.+|.+..... ...|+ ...|..+..++. ...+..+|.+.-
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 455 5555554431 24567888899988322 05565 334444433322 134566778888
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
++..+ --+.|+.....+..++.-.++++.|...|++... +.|+ +.+|......+.-.|+.++|.+.++++.++
T Consensus 328 ~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 328 DYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 88887 3455778888888888888899999999999986 4665 556666666678899999999999999999
Q ss_pred CCCC--hhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 428 DPQD--FSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 428 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+|.- ..+....+..|+.. ..++|++++-
T Consensus 402 sP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred CchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 9963 33344444466654 4566666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.91 Score=44.06 Aligned_cols=159 Identities=9% Similarity=0.003 Sum_probs=104.2
Q ss_pred HHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 97 CAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
..-.++++.+.+..+.-.-. +.....-.+.++..+.+.|..+.|+++-..- ..-.....+.|+++.|.++-
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHH
Confidence 34457788876665411111 1223556888999999999999998875542 23445566889999999998
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHH
Q 038200 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (523)
++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+...++.+.....|-
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------ 404 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------ 404 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------
Confidence 8876 567999999999999999999999987543 45566667778888887777777766652
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcC
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMA 281 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~ 281 (523)
++....++.-.|+.+++.+++.+..
T Consensus 405 ~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3444555566688888887776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.18 Score=44.04 Aligned_cols=110 Identities=11% Similarity=0.163 Sum_probs=78.1
Q ss_pred HHHHHhcCC--CCChhHHHHHHHHHHh-----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc------------
Q 038200 172 AHELFDIMP--ERNVVSWNIMISGYSK-----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS------------ 232 (523)
Q Consensus 172 a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------ 232 (523)
.+..|.... ++|-.+|-+.+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 4666677766666543 355666667778888888888888998888876443
Q ss_pred ----ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh-HHHHHHHHhcC
Q 038200 233 ----ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMA 281 (523)
Q Consensus 233 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 281 (523)
.+-+-+..++++|...|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23455788999999999999999999999999887753 34444444443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.57 Score=37.85 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=55.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
--+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|...... . .-|+..+-....+|.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHH
Confidence 33456777777777777776643 223333445555555667777777777766553 2 234444555677777
Q ss_pred cCCChHHHHHHHHhCCC
Q 038200 373 GAELTEEAEEILRKMPE 389 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~ 389 (523)
..|+.+.|...|....+
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777777773
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.21 Score=46.19 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
+++.+..+|.+.+++.+|++.-++.+... ++|....-.=..+|...|+++.|+..|+++.+. -+-|...-.-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~e 330 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD------PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAE 330 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 45556666667777777777666666653 445555555666666667777777777776652 2223333334
Q ss_pred HHHHHHcCCChH-HHHHHHHhCC
Q 038200 367 MANLYAGAELTE-EAEEILRKMP 388 (523)
Q Consensus 367 l~~~~~~~g~~~-~A~~~~~~~~ 388 (523)
|+.+-.+..... ...++|..|.
T Consensus 331 l~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 331 LIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333333332 2345555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.9 Score=37.11 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccC--ChHHHHHHHhhcCC
Q 038200 73 VFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFG--AMDCARNMFVQMSP 150 (523)
Q Consensus 73 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 150 (523)
+.++.+.+.+++|+...+..++..+.+.|++.... .+++.++-+|.......+-.+.... -...|..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 34455556777777778888888888777755433 3345555555554444332222211 1222333333332
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMM 211 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 211 (523)
..+..++..+...|++-+|.++.+....-+......++.+..+.++...-..+|+-..
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344445555555666666655555433332333334444444444444444444333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.11 Score=42.86 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=50.7
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCch-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFE-----SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
+...|++++|..-|.+.++. .++. .+.|..-..++.+.+.++.|..-..++++++|....++..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 44556666666666655542 1111 233333344555666666666666666666665555555556666666
Q ss_pred CChhHHHHHHHHHHhC
Q 038200 446 GQWEDVARVRELMKKR 461 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~ 461 (523)
.++++|+.=|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.6 Score=41.84 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMWVS 403 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ 403 (523)
..+=..+..++-+.|+.++|.+.++++.+.+....+......|+.++...+.+.++..++.+--+. ..+ .-...|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi--~lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI--SLPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc--cCCchHHHHHHH
Confidence 334445667777889999999999999875332234567778899999999999999998886531 112 22445555
Q ss_pred HHHHHHhcCC---------------HHHHHHHHHHHhhcCCCCh
Q 038200 404 LLSLCRFQGA---------------VAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 404 l~~~~~~~g~---------------~~~a~~~~~~~~~~~p~~~ 432 (523)
.+-.++..++ ...|.+.+.++.+.+|.-|
T Consensus 337 ALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 337 ALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 5544444443 1345577777877777543
|
The molecular function of this protein is uncertain. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.6 Score=38.25 Aligned_cols=136 Identities=12% Similarity=-0.034 Sum_probs=58.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC-cHHHHHHHHHHhhHhcCCCCCh
Q 038200 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE-LLTEGRKYFRQMIDFYKIKPNF 361 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 361 (523)
++..+-...+.++.+.++ ..+...+-.+... ++...-...+.++.+.+ ....+...+..+.. .++.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~ 206 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD--------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNE 206 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC--------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCCh
Confidence 344444444555555444 3344444444432 22233333333333322 12234444444433 2344
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.+....+.++.+.|+ ..|...+-+..+. ++ .....+.++...|+. +|...+..+.+..| |..+-..-..+
T Consensus 207 ~VR~~A~~aLg~~~~-~~av~~Li~~L~~-----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 207 EIRIEAIIGLALRKD-KRVLSVLIKELKK-----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHHHHHHHccCC-hhHHHHHHHHHcC-----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 555555556666555 3344444443421 11 122344455555553 45666666555555 33333333333
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.2 Score=39.27 Aligned_cols=153 Identities=9% Similarity=0.020 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--h
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN--F 361 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 361 (523)
...+|..++..+.+.|+++.|...+.++...+...... .+.....-+..+-..|+..+|...++...+. .+..+ .
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~ 221 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDS 221 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccc
Confidence 44567778888888888888888888877643110001 2333344455566678888888888777662 11111 1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhcCCCChhhH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ------GAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.....+...+.. .......-.........-...+..+..-+... ++.+.+...|+.+.++.|.....|
T Consensus 222 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~ 295 (352)
T PF02259_consen 222 ISNAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW 295 (352)
T ss_pred ccHHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence 111111111100 00000000000000011122333333333344 778888999999999998877777
Q ss_pred HHHHHHHHhc
Q 038200 436 QFLLNVYAVA 445 (523)
Q Consensus 436 ~~l~~~~~~~ 445 (523)
..++..+.+.
T Consensus 296 ~~~a~~~~~~ 305 (352)
T PF02259_consen 296 HSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHH
Confidence 7777766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.5 Score=35.02 Aligned_cols=42 Identities=19% Similarity=0.074 Sum_probs=19.6
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc
Q 038200 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC 134 (523)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (523)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444555555555444432 344455555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=2.2 Score=37.06 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=143.3
Q ss_pred CCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccccHHHHHHHHHHHHHc-CCCCchHHHHHHhhhhhhcCChHHHHH
Q 038200 198 GNPGCSLKLFREMMKSGFR-GNDKTMASVLTACGRSARFNEGRSVHGYTVRT-SLKPNIILDTALIDLYSKCQKVEVAQR 275 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 275 (523)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12455556666666677777776666665542 223345555566666666677777777
Q ss_pred HHHhcCC--CCh-HHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCCc--CCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 276 VFDSMAD--RNL-VCWNAMIL-GHCIHGKPEEGIKLFTALVNGTVAGGSI--SPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 276 ~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
.+..... ++. ........ .+...|+++.|...+.+..... . ......+......+...++.+.+...+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 7776654 221 22333333 6888899999999999886622 1 1123344444445677889999999999
Q ss_pred HhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 350 QMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 350 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
..... ... ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 192 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL----DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh----CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 98873 444 4677888888899999999999999988853 343 344444555555777899999999999988
Q ss_pred CCC
Q 038200 428 DPQ 430 (523)
Q Consensus 428 ~p~ 430 (523)
.|.
T Consensus 266 ~~~ 268 (291)
T COG0457 266 DPD 268 (291)
T ss_pred Ccc
Confidence 885
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.084 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+..+...+...|++++|.+.++++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555666666777777777766666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.5 Score=34.96 Aligned_cols=128 Identities=11% Similarity=0.083 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 038200 53 FCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMY 132 (523)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (523)
..-..++..+...+.+......++.+...+ ..+...++.++..+++.. .....+.++. ..+......+++.|
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 344567777777777888888888877765 356667777777777653 2333333331 12334444566666
Q ss_pred HccCChHHHHHHHhhcCCCCcchHHHHHHHHHhc-CCHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038200 133 GCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS-GDMSAAHELFDIMPERNVVSWNIMISGYS 195 (523)
Q Consensus 133 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 195 (523)
.+.+.++++.-++.++.. |...+..+... ++++.|.+.+.+-. +...|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 666666666666655522 22222223333 55666666555522 3445555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.067 Score=30.28 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666667777777777777666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.8 Score=37.40 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=92.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 273 AQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 273 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
..+.+++...+....--.-.......|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+-
T Consensus 122 lr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 122 LRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA------PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC------cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444444444322222223334556777777777777777643 2234455566677777788888877777765
Q ss_pred HhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C
Q 038200 353 DFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--P 429 (523)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p 429 (523)
.. --.........-+..+.+.....+...+-++... .| |...-..+...+...|+.+.|.+.+-.++..+ -
T Consensus 196 ~~-~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 196 LQ-AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred cc-chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 42 1111111112233444454455544555555442 33 44555556666777777777777766666543 3
Q ss_pred CChhhHHHHHHHHHhcCChhHH
Q 038200 430 QDFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A 451 (523)
.+...-..|+..+.-.|.-+.+
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHH
Confidence 3566677777777777654443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.47 Score=36.31 Aligned_cols=94 Identities=18% Similarity=0.039 Sum_probs=55.0
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG 412 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 412 (523)
+++..|+.+.|++.|.+... -.+-....|+.-..++.-.|+.++|++-+++.++...+-.. .-..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34566677777777776665 33445666777777777777777777776666543221111 1122333333466677
Q ss_pred CHHHHHHHHHHHhhcCC
Q 038200 413 AVAMVERLAKSFVDMDP 429 (523)
Q Consensus 413 ~~~~a~~~~~~~~~~~p 429 (523)
+.+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777776665543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.6 Score=33.60 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
....+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~------~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE------EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc------CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444555566666666666666655432 455556666666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.48 E-value=6.7 Score=40.30 Aligned_cols=142 Identities=13% Similarity=0.023 Sum_probs=95.1
Q ss_pred HHhhccCCchhHHHHhccC-CCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHH
Q 038200 29 KHSADFGSPDYTVLVFKCI-NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGG 107 (523)
Q Consensus 29 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 107 (523)
+.+-+.|++++|...+-+- ..-+. ..++.-|........-...++.+.+.|+. +...-..|+.+|.+.++.++-.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 4455789999999877543 31111 23677777777888888889999998854 4555678999999999988877
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038200 108 MCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPE 181 (523)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 181 (523)
++.+..- .|.- ..-....+..+.+.+-.++|.-+-.+... +......++ -..+++++|.+.+..++-
T Consensus 452 efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 452 EFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCCH
Confidence 7665443 2211 12245566777777777777666555443 333333333 356889999999999974
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.74 Score=45.33 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=96.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-----HHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCch
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-----AHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.+..++....-.|+-+.+++.+....+..++.-.. -.|...+..++. ....+.|.++++.+... -|+
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~ 265 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPN 265 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCC
Confidence 45567777778899999999999887743343222 223333433332 45778999999999963 677
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 398 SIMWVSLLS-LCRFQGAVAMVERLAKSFVDMDP----QDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 398 ~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
...|...-. .+...|+.++|.+.++.+..... -..-.+..++..+.-.++|++|...|.++.+.+
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 766655544 57889999999999998775222 134478889999999999999999999997753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.37 E-value=4.1 Score=37.41 Aligned_cols=168 Identities=10% Similarity=0.062 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC---C--CchH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKS-GFRG---NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL---K--PNII 255 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~ 255 (523)
.+|..+..++-+..++.+++.+-..-... |..| ......++..++...+.++++.+.|+...+... . ....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 44556666666666666666665544332 2222 113344566777778888888888887765421 1 2346
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC-------CChH-HH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD-------RNLV-CW-----NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
++..|...|.+..++++|.-+..+..+ .|.. -| -.|.-++-..|...+|.+.-++..+.....++-.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788888888888888887765554422 2222 12 2234456667777777766666544321000111
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhh
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMI 352 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (523)
........+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 123345556667777888888777776654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.35 E-value=4.9 Score=38.18 Aligned_cols=377 Identities=9% Similarity=0.031 Sum_probs=206.0
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCC-CCcccHHHHHHH--HHhCCCchHHHHHHHHHHHC--CCCC------------
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIKA--YSNSCVPDQGVVFYLQMIKN--GFMP------------ 85 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~--~~~p------------ 85 (523)
..+.++++|-. .+++..........+ -....|-.+..+ +-+.+.+.+|++.+..-... +..|
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 34456666653 456666555544432 113445555554 34778999999888765543 2222
Q ss_pred CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCC----CCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCcchHH
Q 038200 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVD----FELPVMNSLINMYGCFGAMDCARNMFVQMS----PRDLISWN 157 (523)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 157 (523)
|-..=+..++++...|++.+++.+++++...=++ .+..+|+.++-+++++ .|-++. ..=...|.
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyY 198 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYY 198 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHH
Confidence 1112245667778999999999999998775444 7899999988777653 222221 11112233
Q ss_pred HHHHHHHhc-CCHH--------HHHHHHhcCC--------------------------CCCh-hHHHHHHHHHHhcCCch
Q 038200 158 SIVSGHVRS-GDMS--------AAHELFDIMP--------------------------ERNV-VSWNIMISGYSKSGNPG 201 (523)
Q Consensus 158 ~ll~~~~~~-~~~~--------~a~~~~~~~~--------------------------~~~~-~~~~~li~~~~~~~~~~ 201 (523)
-++-.|.+. ...+ -..+++..+. .|+- -....|...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 333333221 1111 1122222111 0211 111222223332 455
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh-------hhhhh----
Q 038200 202 CSLKLFREMMKSGFRG----NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI-------DLYSK---- 266 (523)
Q Consensus 202 ~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~---- 266 (523)
++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-. .|+..+...++ +..+.
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~ 354 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDES 354 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHH
Confidence 5555544443332211 1247788888888888888888888776653 34433332221 11111
Q ss_pred cCChHHHHHHHHhcCCCChH---HHHHHH---HHHHhcCC-hHHHHHHHHHHHhCCCCCCCcCCCH-HH----HHHHHHH
Q 038200 267 CQKVEVAQRVFDSMADRNLV---CWNAMI---LGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDE-IT----FIGVICA 334 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~~~~~---~~~~li---~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~p~~-~~----~~~ll~~ 334 (523)
.-+..+=+.+++.+...|+. ....|+ .-+.+.|. -++|+.+++..... .|.. .. +..+=.+
T Consensus 355 ~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-------t~yD~ec~n~v~~fvKq~ 427 (549)
T PF07079_consen 355 YTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-------TNYDIECENIVFLFVKQA 427 (549)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHH
Confidence 11223334444544443321 112222 33556666 88999999998883 4433 22 2222233
Q ss_pred Hhh---cCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHH--HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 335 CVR---AELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANL--YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 335 ~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
|.+ ...+.+-..+-+-+.+. |++|- ...-+.|.++ +...|++.++.-.-.-+.+ +.|++.++..+.
T Consensus 428 Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~----iaPS~~~~RLlG 502 (549)
T PF07079_consen 428 YKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK----IAPSPQAYRLLG 502 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH----hCCcHHHHHHHH
Confidence 332 23344444444445554 88773 4455556554 4578999998866555553 688888988888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSF 424 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~ 424 (523)
-......++++|..++..+
T Consensus 503 l~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhhHHHHHHHHHhC
Confidence 8888889999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.1 Score=37.01 Aligned_cols=233 Identities=10% Similarity=-0.045 Sum_probs=115.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCc----hHHHHHHHHHHHhCCCCCc
Q 038200 47 INNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCV----ERGGMCHGLALKNGVDFEL 122 (523)
Q Consensus 47 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~ 122 (523)
+..+|.......+.++...|. ..+...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++.
T Consensus 32 L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~ 105 (280)
T PRK09687 32 LDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSA 105 (280)
T ss_pred HhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCH
Confidence 344555555556666665554 333333344433 23444444455555555543 3455555544332 3445
Q ss_pred hHHHHHHHHHHccCCh-----HHHHHHHhh-cCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 038200 123 PVMNSLINMYGCFGAM-----DCARNMFVQ-MSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK 196 (523)
Q Consensus 123 ~~~~~l~~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 196 (523)
.+-...+.+++..+.. ..+...+.. +..++..+-...+.++++.++.+....+..-+..+|...-...+.++.+
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 5555555555544321 223333322 2344555555666666666665444444444444555544444445544
Q ss_pred cC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHH
Q 038200 197 SG-NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQR 275 (523)
Q Consensus 197 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 275 (523)
.+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+ + .....+.++...|.. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 32 23455555555553 34556666666777777664 3444444444432 1 233456666666664 4666
Q ss_pred HHHhcCC--CChHHHHHHHHHH
Q 038200 276 VFDSMAD--RNLVCWNAMILGH 295 (523)
Q Consensus 276 ~~~~~~~--~~~~~~~~li~~~ 295 (523)
.+..+.+ +|...-...+.++
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHH
Confidence 6666543 4444444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.18 E-value=6.3 Score=38.85 Aligned_cols=354 Identities=10% Similarity=0.071 Sum_probs=184.0
Q ss_pred HHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHccCCchHHHHHHHHHHHh
Q 038200 40 TVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSY-TFVSLFGSCAKTGCVERGGMCHGLALKN 116 (523)
Q Consensus 40 A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 116 (523)
-.+.|+... .-+-..|+.+|.---...+.+.+..++..++.. .|... -|......=.+.|..+.+..+|++.+..
T Consensus 31 ~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a 108 (577)
T KOG1258|consen 31 SLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA 108 (577)
T ss_pred hhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444433 234556777776655555667777788887754 45554 3444444446778899999999998764
Q ss_pred CCCCCchHHHHHHHHHH-ccCChHHHHHHHhhcCC------CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 038200 117 GVDFELPVMNSLINMYG-CFGAMDCARNMFVQMSP------RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189 (523)
Q Consensus 117 ~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 189 (523)
++.+...|...+..+. ..|+.+.....|+.... .+...|...|..-..++++.....+++++.+--...|+.
T Consensus 109 -ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 109 -IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred -hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 6678888888776655 46788888888887763 255677778887788888888888888887644444444
Q ss_pred HHHHHHh---c------CCchHHHHHHHHHHHC-C---CCCCHHHHHHHHHHH-hccccHHHHHHHHHHHHHcCCCCchH
Q 038200 190 MISGYSK---S------GNPGCSLKLFREMMKS-G---FRGNDKTMASVLTAC-GRSARFNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 190 li~~~~~---~------~~~~~a~~~~~~m~~~-~---~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (523)
...-|.+ . ...+++.++-...... . ..+.......-+.-. ...+..+.+.....+...
T Consensus 188 ~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-------- 259 (577)
T KOG1258|consen 188 HFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-------- 259 (577)
T ss_pred HHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH--------
Confidence 4333322 1 1122222211111110 0 000000111111000 000111111111111100
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD-----------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
.--.+|-...........|+.-.+ .+..+|...+.--...|+.+.+.-+|++..--- .-=
T Consensus 260 ---~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c------A~Y 330 (577)
T KOG1258|consen 260 ---IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC------ALY 330 (577)
T ss_pred ---HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH------hhh
Confidence 000111122222333333333322 234577777777778888888888887765421 111
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH-cCCChHHHHHHHHhCCCCCCCCCchHHH-HH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA-GAELTEEAEEILRKMPEDNDNMSFESIM-WV 402 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~ 402 (523)
...|-..+.-....|+.+-|..++....+- ..|+......+-..+. ..|+++.|..+++.+.+. . |+... -.
T Consensus 331 ~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e---~-pg~v~~~l 404 (577)
T KOG1258|consen 331 DEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE---Y-PGLVEVVL 404 (577)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---C-CchhhhHH
Confidence 223333444444447777777777766653 2233222222222333 356888888888887754 3 44222 12
Q ss_pred HHHHHHHhcCCHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVER 419 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~ 419 (523)
.-+....+.|+.+.+..
T Consensus 405 ~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 405 RKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhHHHHhcchhhhhH
Confidence 22334566677666663
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.11 Score=29.97 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.36 Score=43.05 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++..++..+...|+.+.+...++...+.+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566666777777777777777777777777777777788888877777777777755
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.11 Score=41.71 Aligned_cols=84 Identities=8% Similarity=0.046 Sum_probs=42.9
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..|.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555556666666666666555444556666666666666555666555553221 2233344444444444444
Q ss_pred HHHHhcC
Q 038200 173 HELFDIM 179 (523)
Q Consensus 173 ~~~~~~~ 179 (523)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 4444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=4 Score=35.76 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=48.5
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.+.+-|.+.|.+..|..-+++|.+.-....-....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3566788999999999999998865222222344556667788899999999888777766667654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.8 Score=35.04 Aligned_cols=97 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh--
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-- 361 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 361 (523)
..+..+..-|++.|+.+.|++.|.++.+.. ..|.. ..+..+|..+...+++..+...+.++........|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 356677778888888888888888887765 34432 356677777788888888888877776531111111
Q ss_pred ----HHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 362 ----AHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 362 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
..|..| .+...+++.+|-+.|-+...
T Consensus 112 ~nrlk~~~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 112 RNRLKVYEGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHH--HHHHhchHHHHHHHHHccCc
Confidence 222222 23456788888888887764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.2 Score=37.18 Aligned_cols=98 Identities=13% Similarity=0.072 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCChhhHH--
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD--PQDFSRYQ-- 436 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~-- 436 (523)
...+..+...|.+.|+.++|.+.+.++.+...+...-...+..++..+...+++..+.....++...- +.+...-+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35677888889999999999999999886544444445667777888888899999988888887632 22222111
Q ss_pred --HHHHHHHhcCChhHHHHHHHHH
Q 038200 437 --FLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 437 --~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.-+-.+...+++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 2233345678888888877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=7.5 Score=37.59 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
|.....+++..+..+..+.-++.+-.+|...| -+...+..++.+|... ..+.-..+++++.+ .|++.-..|...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444444555555555554555555554433 2344444455544444 33334444443332 222222333333
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 038200 295 HCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~ 313 (523)
|-+ ++...+...|.+...
T Consensus 142 yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHH-hchhhHHHHHHHHHH
Confidence 322 444444444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.52 E-value=6.4 Score=37.24 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=53.4
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP----QDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.....+|..+...+++.|.++.|...+.++....+ ..+.+...-+..+...|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566788888889999999999999988887542 14567777888889999999999988887763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.42 Score=40.22 Aligned_cols=91 Identities=10% Similarity=0.084 Sum_probs=44.8
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCch
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRG 489 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (523)
..|-...|.--|.+...+.|+-+.+|+.|+--+...|+++.|.+.|+...+ .+|+.....++.-+..+..+. ..
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E----LDp~y~Ya~lNRgi~~YY~gR--~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHLNRGIALYYGGR--YK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc----cCCcchHHHhccceeeeecCc--hH
Confidence 334444555555555556666566666666666666666666666665532 234333333333333332222 33
Q ss_pred HHHHHHHHHHhcccCCc
Q 038200 490 GMKEEVNKMMECRQSRS 506 (523)
Q Consensus 490 ~~~~~l~~~~~~~~~~~ 506 (523)
=+.+.+.+....+|+++
T Consensus 151 LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hhHHHHHHHHhcCCCCh
Confidence 34444455555555444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.46 E-value=11 Score=38.99 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=72.6
Q ss_pred HHHHHHHhhccCCchhHHHHhccCCC----CCcccHH----HH-HHHHHhCCCchHHHHHHHHHHHCC---CCCCcccHH
Q 038200 24 TINLLKHSADFGSPDYTVLVFKCINN----PGTFCVN----AV-IKAYSNSCVPDQGVVFYLQMIKNG---FMPNSYTFV 91 (523)
Q Consensus 24 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~----~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~ 91 (523)
...++..+.+.+... |.+..++..+ .....|. -+ +..+...+++..|.+.++.....- ..|-...+.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 344556666655544 8877776431 1122222 22 222223479999999998876532 244445556
Q ss_pred HHHHHHH--ccCCchHHHHHHHHHHHhCC---------CCCchHHHHHHHHH--HccCChHHHHHHHhhcC
Q 038200 92 SLFGSCA--KTGCVERGGMCHGLALKNGV---------DFELPVMNSLINMY--GCFGAMDCARNMFVQMS 149 (523)
Q Consensus 92 ~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 149 (523)
.++.+.. +.+..+++.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666654 45667777777777744322 23456677776654 46788777777766653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.45 E-value=3.6 Score=33.54 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHhcCCCChHHHHHHH-----HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHH--HHHhhc
Q 038200 267 CQKVEVAQRVFDSMADRNLVCWNAMI-----LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVI--CACVRA 338 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll--~~~~~~ 338 (523)
.+..++|+.-|..+.+.+...|-.|. ......|+...|...|.+.-... ..|-.. -...|= -.+...
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-----~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-----SIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-----CCcchhhHHHHHHHHHHHhcc
Confidence 34455555555555443333332222 22445566666666666655433 222211 111111 123445
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
|.+++...-.+.+... +.+.....-..|.-+-.+.|++..|.+.|..+.
T Consensus 146 gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 146 GSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred ccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5555555555554442 333333444455555556666666666666555
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.43 E-value=19 Score=41.91 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=49.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
..+|-.......+.|.++.|...+-...+ .-...+--..+.+.+.|+...|+.++++.....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46777888888889999999877665544 445566677788899999999999999988654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.40 E-value=8 Score=37.41 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
..-+++..+.....+.-+..+..+|..-| -+-..|..++.+|... ..+.-..+++++++..+. |+..-..|...|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 34556677777777777777888887754 4667788888888777 556677788877776554 5555566666666
Q ss_pred hcCChHHHHHHHHhc
Q 038200 266 KCQKVEVAQRVFDSM 280 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~ 280 (523)
+ ++.+++..+|.++
T Consensus 144 k-ik~sk~a~~f~Ka 157 (711)
T COG1747 144 K-IKKSKAAEFFGKA 157 (711)
T ss_pred H-hchhhHHHHHHHH
Confidence 5 6777777776664
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=3.5 Score=34.33 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=42.2
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
.+...+++++|...++..... ....+ ...--.|.+.....|.+++|+..++..... .-.......-...+...
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~----~w~~~~~elrGDill~k 172 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE----SWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc----cHHHHHHHHhhhHHHHc
Confidence 445556666666665555432 10000 111123344455556666666666555521 11122222223345555
Q ss_pred CCHHHHHHHHHHHhhcCC
Q 038200 412 GAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p 429 (523)
|+-++|+..|+++.+.++
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 666666666666655543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.21 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
|.++..++.+|.+.|++++|.+++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999997753
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.2 Score=40.63 Aligned_cols=144 Identities=6% Similarity=-0.062 Sum_probs=100.6
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
-...|+.-.|-+-+......+.-.|+ ........+...|+++.+.+.+...... +.....+..+++......|++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~---~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI---IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh---hcCCchHHHHHHHhhhchhhH
Confidence 34557777776555555553344444 3333444567789999999988776532 344556777888888889999
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH 485 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (523)
+.|....+.++..+-.++++...-+..-...|-++++.-.|+++...+.+.+. .|+-+.+....|-.++
T Consensus 374 ~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~--g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS--GWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc--cceeeeccceeccCcc
Confidence 99999999998877777776666666666778899999999999776544444 4577777777776666
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.94 E-value=7.1 Score=35.52 Aligned_cols=118 Identities=10% Similarity=0.052 Sum_probs=57.2
Q ss_pred hcCCchHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHhccc-cHHHHHHHHHHHHHc--------CCCCc-----
Q 038200 196 KSGNPGCSLKLFREMMKSG--FRGNDK------TMASVLTACGRSA-RFNEGRSVHGYTVRT--------SLKPN----- 253 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 253 (523)
+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|...+++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666554422 122221 2222222 23334 666666555554432 11122
Q ss_pred hHHHHHHhhhhhhcCChH---HHHHHHHhcCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 254 IILDTALIDLYSKCQKVE---VAQRVFDSMAD--RN-LVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
..+...++.+|...+..+ +|..+++.+.. ++ +..+..-+..+.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234555666666655533 34444444422 22 334444455555566777777777777664
|
It is also involved in sporulation []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=6.1 Score=34.72 Aligned_cols=237 Identities=14% Similarity=0.131 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc----C-CCCchH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKS---GF--RGNDKTMASVLTACGRSARFNEGRSVHGYTVRT----S-LKPNII 255 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 255 (523)
+...++..+.+.+++++.+..|.+|..- .+ .-+..+.+.++.-.+...+.+.-..+|+.-.+. . -..--.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3445666777777777777777766431 11 123445666666555555555555555433221 0 011112
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCC------------C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMAD------------R---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGS 320 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 320 (523)
+-+.|...|...+.+.+..+++.++.. . -...|..-|+.|...++-.+-..++++...-. +
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK----S 222 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK----S 222 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh----c
Confidence 334566677777777777777766532 1 12467777888888888888888888776533 1
Q ss_pred cCCCHHHHHHHHHHH-----hhcCcHHHHHHHHHHhhHhcC---CCC--ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 321 ISPDEITFIGVICAC-----VRAELLTEGRKYFRQMIDFYK---IKP--NFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 321 ~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
.-|.+..... |+-| .+.|.+++|..-|-++.+.|. -+. ..--|..|..++.++|-- =|+.-..+
T Consensus 223 AIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAK 296 (440)
T KOG1464|consen 223 AIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAK 296 (440)
T ss_pred cCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccC
Confidence 4566655544 4444 356788887654444433232 221 223456667777776521 01111111
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
...-.|.......++.+|. .++..+.++++..-...--+||.
T Consensus 297 PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpF 338 (440)
T KOG1464|consen 297 PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPF 338 (440)
T ss_pred CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHH
Confidence 2234566777778887774 45677777776655543333443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.75 E-value=9.9 Score=36.71 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC--RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
+.+++-+.+.|-..+|..++...... .+|....+..++..- ...-+...+..+++.+...-..++..|......-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~l---pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQEL---PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhC---CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Confidence 45666666777777777777777653 344556666665532 2223366777777777653225667777666666
Q ss_pred HhcCChhHHHHHHHHHH
Q 038200 443 AVAGQWEDVARVRELMK 459 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~ 459 (523)
...|+.+-+-.++.+..
T Consensus 541 ~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccCCCcccccHHHHHHH
Confidence 67777777666655543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=14 Score=38.12 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=62.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (523)
..+.+.|..++....... ...+.. .....+.......+...++...+...... . .+......-+....+.+
T Consensus 254 r~d~~~A~~~~~~~~~~~----~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~-~--~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQ----KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR-S--QSTSLLERRVRMALGTG 326 (644)
T ss_pred HhCHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc-c--CCcHHHHHHHHHHHHcc
Confidence 445577777777664433 022222 22333333333332245566666655432 1 23344444455555777
Q ss_pred ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
+++.+...+..|.... .-...-..=+..++...|+.++|..+|+.+.
T Consensus 327 dw~~~~~~i~~L~~~~---~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 327 DRRGLNTWLARLPMEA---KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHHhcCHhh---ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8877777777776421 2222233334445555788888888877764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.29 E-value=8.7 Score=34.96 Aligned_cols=93 Identities=8% Similarity=-0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccccHH---HHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC---ChHHHHHHHHH
Q 038200 221 TMASVLTACGRSARFN---EGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR---NLVCWNAMILG 294 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~ 294 (523)
++..++.++...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+.+.+.+.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 5566777776666544 4555666664442 223445545566666677888888888877542 22334444433
Q ss_pred H---HhcCChHHHHHHHHHHHhCC
Q 038200 295 H---CIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 295 ~---~~~g~~~~a~~~~~~m~~~~ 315 (523)
+ ... ....|...+..+....
T Consensus 165 i~~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 165 IKQLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHhh-CcHHHHHHHHHHHHHH
Confidence 3 332 3345555555555444
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.35 Score=27.19 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
|..+...+...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444455555555555555555555555
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.1 Score=39.97 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=54.0
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
..++..++..+..+|+++.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.+.-....|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45566677777777777777777777654 255678888888888888888888777776633333346666655444
Q ss_pred HHHH
Q 038200 331 VICA 334 (523)
Q Consensus 331 ll~~ 334 (523)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=4.2 Score=34.04 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=70.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSL 407 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 407 (523)
-+...|++++|..-|..+.+. .++. ...|..-..++.+.+.++.|++-..+.++ +.|. ...+..-..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie----l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE----LNPTYEKALERRAEA 177 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh----cCchhHHHHHHHHHH
Confidence 356678888888888888773 3332 34455556677888899999888888775 3442 2333333556
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
|.+...++.|..-|+++.+.+|....+-...+++
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7788889999999999999999655554444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.43 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 038200 187 WNIMISGYSKSGNPGCSLKLFREM 210 (523)
Q Consensus 187 ~~~li~~~~~~~~~~~a~~~~~~m 210 (523)
|+.|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666663
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.9 Score=29.76 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=44.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
..+...|++++|..+.+.+..||...|.+|.. .+.|-.+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45677899999999998888889888877643 46777777777777787776 45555444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.55 E-value=8.4 Score=35.27 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhh-cCc--HHHHHHHHHHhhHhcCCCCChHHHHHHHHHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVR-AEL--LTEGRKYFRQMIDFYKIKPNFAHYWCMANLY 371 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~-~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (523)
+.+..+|+.+.+.| ...+ ..-+.+-+-++.. ... ...+..+++.+.+. ++++....|..+.-..
T Consensus 160 ~~~E~~Y~~L~~~~-----f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAG-----FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhC-----CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 55677888888877 4443 3233333333332 222 45788899999997 9998888877654433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.26 E-value=21 Score=37.28 Aligned_cols=221 Identities=12% Similarity=-0.011 Sum_probs=120.6
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCch-------HHHHHHh-hhhhhcCChHHHHHHHHhcCC--------CChHHHHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNI-------ILDTALI-DLYSKCQKVEVAQRVFDSMAD--------RNLVCWNAMI 292 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li 292 (523)
.....++++|..++.++...-..|+. ..++.|- ......|++++|.++.+.... ..+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 45667888888888877765333221 1233332 223456788888888776533 3556778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH---HHHHHH--HHHhhcCc--HHHHHHHHHHhhHhcCCC-----CC
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI---TFIGVI--CACVRAEL--LTEGRKYFRQMIDFYKIK-----PN 360 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~---~~~~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----~~ 360 (523)
.+..-.|+++.|..+..+..+.. -.-+.. .+..+. ..+..+|. ..+....+......+... +-
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a-----~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMA-----RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHH-----HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 88889999999998877665532 122222 223332 33556673 333344444443321111 12
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-hh--
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI----MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD-FS-- 433 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-~~-- 433 (523)
..++..+..++.+ .+.+..-.....+.+....|... .+..++......|+.+.|...+..+..+-.+. +.
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2344455555554 44444433333322222233221 22355667788999999999999888732211 11
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHH
Q 038200 434 ----RYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 434 ----~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++..-...-...|+..++.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 111222233467888887766554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.69 Score=41.76 Aligned_cols=114 Identities=11% Similarity=0.020 Sum_probs=80.5
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
-..-|.++|.+++|+..|...... .+-|+.++..-..+|.+..++..|..-....+..+ ..-...|..-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHH
Confidence 355688999999999999998862 33388888888999999999998887777766321 1223344455555556
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|+.++|.+-++.+++++|++.+ |-..|.+.....|+.-
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 78899999999999999997544 3344444444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.73 E-value=8.2 Score=31.65 Aligned_cols=133 Identities=9% Similarity=0.053 Sum_probs=76.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC--ChHHHHHHHHhcC
Q 038200 204 LKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--KVEVAQRVFDSMA 281 (523)
Q Consensus 204 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 281 (523)
+++++.+.+.+++|+...+..+++.+.+.|++....+ +++.++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566777778888888899999999998888665444 344444444433333332222111 1333444444443
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 282 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
..+..++..+...|++-+|+++.+...... .++. ..++.+..+.++...-..+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~------~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVD------SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc------cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245556677778888888888877653321 2222 3355555555655544444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.9 Score=31.47 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
-+..+-++.+.... +.|++....+.+.+|.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~D-----lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYD-----LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSS-----B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566667777666 889999999999999999999999999999988533 333367666653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.55 E-value=2.4 Score=30.65 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
+.-++.+-++.+.... ..|++....+.+++|.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~D-----lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYD-----LVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 4455666677777766 8899999999999999999999999999988864 3224456665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.52 E-value=8.4 Score=32.49 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ChhhHHHHHHHHHhcC
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----DFSRYQFLLNVYAVAG 446 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 446 (523)
..+.|+ ++|.+.|-++... +.--++..... +..|....|.+++..++-+++++.+. |+.++..|+.+|.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~--~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGT--PELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCC--CCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 455565 7888888888833 33344444444 44455578899999999999985332 7899999999999999
Q ss_pred ChhHHH
Q 038200 447 QWEDVA 452 (523)
Q Consensus 447 ~~~~A~ 452 (523)
+++.|-
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.46 E-value=0.65 Score=25.98 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+..++.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999998664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.2 Score=40.29 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
..-|.++|.+++|++.|.+... +.| |.+++..-..+|.+...+..|..-....... -..-...|..-+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHH
Confidence 4569999999999999999887 889 8999999999999999999888877776653 11123444444444
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchH
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFES 398 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 398 (523)
-...|+..+|.+-++..++ ++|+.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~----LEP~~ 198 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLA----LEPKN 198 (536)
T ss_pred HHHHhhHHHHHHhHHHHHh----hCccc
Confidence 4556677777777777664 56764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.24 E-value=8.6 Score=31.12 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred HHHHHHHH---HHhhcCcHHHHHHHHHHhhHhcCCCCChHH-HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 326 ITFIGVIC---ACVRAELLTEGRKYFRQMIDFYKIKPNFAH-YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 326 ~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
.+.+.|+. .-.+.++.+++..++..+.- +.|.... -..-...+...|++.+|..+|+++.+. .|....-
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----~~~~p~~ 80 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----APGFPYA 80 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc----CCCChHH
Confidence 34444444 34567888999999988875 4554332 223345567889999999999998754 3433344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 451 (523)
..|+..|.....-..=..+.+.+.+.++ ++.+ ..|+..+........|
T Consensus 81 kALlA~CL~~~~D~~Wr~~A~evle~~~-d~~a-~~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 81 KALLALCLYALGDPSWRRYADEVLESGA-DPDA-RALVRALLARADLEPA 128 (160)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhcCC-ChHH-HHHHHHHHHhccccch
Confidence 4555555444333333444455555544 3332 2333444433333333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.45 Score=24.93 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.13 E-value=2.2 Score=34.40 Aligned_cols=84 Identities=13% Similarity=-0.029 Sum_probs=49.6
Q ss_pred HHHHHHHHH---HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 362 AHYWCMANL---YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL-SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 362 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
.+.+.|+.. -.+.++.+++..++..+.- ..|.......+- ..+...|++.+|.++++.+.+-.|..+..-..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv----LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV----LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344444443 3466777777777777763 455544333332 23667778888888888877766666544445
Q ss_pred HHHHHHhcCChh
Q 038200 438 LLNVYAVAGQWE 449 (523)
Q Consensus 438 l~~~~~~~g~~~ 449 (523)
++.++...|+.+
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 555555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.97 Score=25.32 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.56 E-value=27 Score=35.88 Aligned_cols=170 Identities=13% Similarity=0.120 Sum_probs=97.0
Q ss_pred HHHHHccCCchHHHHHHHHHHHhCCCC---CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHH
Q 038200 94 FGSCAKTGCVERGGMCHGLALKNGVDF---ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMS 170 (523)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 170 (523)
++-+.+.+.+++|+.+.+.... ..| -..+...+++.+...|++++|-...-.|...+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3444555666777666554322 233 34567778888888888888888888888777777777777777776665
Q ss_pred HHHHHHhcCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcC
Q 038200 171 AAHELFDIMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTS 249 (523)
Q Consensus 171 ~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 249 (523)
....++=.-+. -+...|..++..+.. .+. .-|.+.++. .+...|..+--.-+-..+ ..+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa~~~q----------~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISATEPQ----------IKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhhcchH----------HHhh-
Confidence 54433322222 245567777776666 222 222223221 122233322211111111 1111
Q ss_pred CCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCCh
Q 038200 250 LKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNL 285 (523)
Q Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 285 (523)
.-+...-..|+..|...+++++|..++-....+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11223334488889999999999999988877544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.55 E-value=1 Score=40.22 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHH
Q 038200 67 VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 67 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
++++++.++..=.+.|+-||.++++.+|+.+.+.+++..|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444444444444555555555555444444444444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.30 E-value=1 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
++.|+.+|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 444444444444444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.22 E-value=2.4 Score=33.61 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+.++.++..+.-+.|+.+..-..-+..+...|+|++|..+++++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555555555555555555555555555555555555555555555443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.19 E-value=14 Score=31.98 Aligned_cols=26 Identities=0% Similarity=-0.138 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
...-...+++.+|.++|+++....-+
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445668889999999888765443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.02 E-value=7.9 Score=38.25 Aligned_cols=151 Identities=13% Similarity=0.028 Sum_probs=91.5
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 038200 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
.-.|+++.|..++..+++ ..-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 345677777766666653 3334555666667766666653 2222211 122346677777776654
Q ss_pred HHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 244 YTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
+. .+..-|..|.++....+++..|.+.|.+... |..|+..+...|+.+....+-....+.| -
T Consensus 662 e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g-------~ 723 (794)
T KOG0276|consen 662 EA------NSEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG-------K 723 (794)
T ss_pred hh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc-------c
Confidence 33 2456677888888888888888888776543 5566667777777666666666555555 1
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
.|....+|...|+++++.+++..-
T Consensus 724 ----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 222334455667777777776654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.88 Score=26.90 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
..+++.+...|...|++++|..+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3577889999999999999999999865
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.68 Score=26.21 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=18.7
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHccCChHHHH
Q 038200 111 GLALKNGVDFELPVMNSLINMYGCFGAMDCAR 142 (523)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 142 (523)
++.++..+. +...|+.+..+|...|++++|+
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 344444433 5666777777777777666664
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=7.6 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++|.-|+.-|...|..++|..+|+-...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3566666666666666666666665433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.87 E-value=17 Score=32.58 Aligned_cols=60 Identities=13% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+......|...|.+.+|.++.+++..++|-+...+..|+..|...|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344455789999999999999999999999999999999999999998888888887753
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.58 E-value=13 Score=31.07 Aligned_cols=85 Identities=6% Similarity=-0.019 Sum_probs=39.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHH-----HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF-----IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
.+...|++++|...++..... |....+ ..|.+.....|.+++|+..++..... ++. ......-.
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~--------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~--~~~~elrG 166 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ--------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWA--AIVAELRG 166 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc--------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHH--HHHHHHhh
Confidence 345555555555555555442 111122 12233444555555555555555442 111 11222334
Q ss_pred HHHHcCCChHHHHHHHHhCCC
Q 038200 369 NLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~ 389 (523)
+.+...|+.++|..-|++..+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALE 187 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHH
Confidence 455555555555555555553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.51 E-value=11 Score=37.37 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=94.2
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
-.|+++.|..++..+.++ ..+.++.-+.+.|..++|+++ .+|+.-- .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------------CCChhhh---hhhhhhcCcHHHHH
Confidence 346666666666655532 233445555566766666653 3333211 12234568888887
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
++..+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+.....
T Consensus 658 ~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 658 DLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD-----------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 7766553 446688888888889999999888888772 3455666667777766655555555
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+.+..+ .-..+|...|+++++.+++.+-
T Consensus 720 ~~g~~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKNN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcccc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 544433 2334567788888888877643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.39 E-value=33 Score=35.36 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHcCCChHHHHHHHHhCC
Q 038200 371 YAGAELTEEAEEILRKMP 388 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~ 388 (523)
+...|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 467889999999998887
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.96 E-value=17 Score=31.47 Aligned_cols=101 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHHhhHhcCCCC-Ch---HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-----HHHHHHHHHH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKP-NF---AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI-----MWVSLLSLCR 409 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~ 409 (523)
.++++|+..|+..-+-|...- +. .++.-+...-+..+++.+|+++|+++.... ...+.. -|..-...|.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLCh 205 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCH 205 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHh
Confidence 455666666666554322211 11 222333334456788999999998877432 111111 1111112232
Q ss_pred -hcCCHHHHHHHHHHHhhcCCC--ChhhHHHHHHH
Q 038200 410 -FQGAVAMVERLAKSFVDMDPQ--DFSRYQFLLNV 441 (523)
Q Consensus 410 -~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 441 (523)
...+.-.+.+.+++..+++|. +..-+..|-..
T Consensus 206 l~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 206 LCKADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred HhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 337777888889999999996 33334444333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.7 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.+.-++.+.|++++|.+..+.+++++|++..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455678899999999999999999999876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.91 E-value=35 Score=35.12 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=33.8
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (523)
...+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|+++.++-- |...|..|+..+
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKeq~--------D~eLWe~LI~~~ 700 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKEQD--------DSELWEDLINYS 700 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHhcC--------CHHHHHHHHHHh
Confidence 3444555555555655555555532 22223333334456666666554432 445666666655
Q ss_pred HhcC
Q 038200 409 RFQG 412 (523)
Q Consensus 409 ~~~g 412 (523)
...-
T Consensus 701 ldkP 704 (846)
T KOG2066|consen 701 LDKP 704 (846)
T ss_pred hcCc
Confidence 5443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.65 E-value=3.7 Score=29.71 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
++.+-++.+. +...-|++.+..+.+.+|++.+|+..|.++++-+...-.++...|..++
T Consensus 25 e~rr~mN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLF--GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 4444455554 3346788888888888888888888888888877643332334555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.31 E-value=48 Score=36.03 Aligned_cols=56 Identities=13% Similarity=-0.054 Sum_probs=30.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+.+|...|++.+|+.+..++.. +-.--..+-..|+.-+...++.-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34555556666666666665543 111112222445566666666666666666665
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.96 Score=24.99 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667888999999999999999998765
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.15 E-value=31 Score=33.59 Aligned_cols=57 Identities=9% Similarity=0.162 Sum_probs=28.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc--CChhHHHHHHHHHHh
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA--GQWEDVARVRELMKK 460 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~ 460 (523)
++.-+.+.|-.++|...+..+..+.|.+...|..++..-..+ -+..-+..+|+.|..
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALR 524 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHH
Confidence 344445555566666666666665555555555554432211 124445555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.14 E-value=0.69 Score=37.10 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=28.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHH
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHG 243 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 243 (523)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44445555566666666666655444455555666666666655555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.96 E-value=1.6 Score=24.29 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 433 SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999988663
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.81 E-value=1.5 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
..+..++...|+.++|.+.++.+++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556677788888888888888887775
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.78 E-value=9 Score=34.59 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=69.2
Q ss_pred CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-C--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 249 SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-R--------NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
|.+....+...++..-....+++.++.++-++.. + ...+|-.++ ..-+..+++.++..=+.-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYG---- 130 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYG---- 130 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhc----
Confidence 4444555555666666666788888888877754 2 222333332 2346678888888888888
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
+-||..+++.+|..+.+.+++.+|..+.-.|...
T Consensus 131 -iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 131 -IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred -cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8999999999999999999999888877776653
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.13 E-value=5.1 Score=34.06 Aligned_cols=54 Identities=11% Similarity=-0.053 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH-HHHHHHHHHhhcCcHHHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI-TFIGVICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~ 350 (523)
..++.+.+.+...+++...++-++ .+|... +-..++..++-.|++++|..-++-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVk-------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVK-------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-------cCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 334445555555555555554444 444322 223334445555555555444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.05 E-value=5.4 Score=29.22 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+..+-++.+. +..+-|++.+..+.+.+|++.+++..|.++++-+...-.+....|..++
T Consensus 28 e~rrglN~l~--~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLF--GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHT--TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHh--ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3444445544 3347788888888889999999999999999888764443333565554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.67 E-value=5.2 Score=38.21 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=79.9
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 295 HCIHGKPEEGIKLFTALV-NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
-...|+...|-+-+.... ... -.|+.....+ ..+...|+++.+.+.+..... -+.....+..++++...+
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~-----~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQ-----QDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCC-----CCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhc
Confidence 345677666655444443 332 3444443333 345677889988888887766 455566778888888888
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.|++++|...-..|... .++ +..+...........|-++++...++++..++|+
T Consensus 370 l~r~~~a~s~a~~~l~~--eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 370 LARWREALSTAEMMLSN--EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhhHHHHHHHHHHHhcc--ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999888888732 122 2222223333455567788888888888887765
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=6.1 Score=35.49 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556667889999999999999999999999988888999999999999999888877665
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=85.15 E-value=14 Score=29.40 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCC---------CCCcccHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCcccHHH
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCIN---------NPGTFCVNAVIKAYSNSCV-PDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
..+.++...+..+++.-.+.+++.+. ..+-.+|+.++.+..+... --.+..+|..|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34444555455555555555555442 1234455566665544444 2345555555555555555555666
Q ss_pred HHHHHHc
Q 038200 93 LFGSCAK 99 (523)
Q Consensus 93 ll~~~~~ 99 (523)
++.+|.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6665544
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.02 E-value=4.4 Score=39.69 Aligned_cols=163 Identities=11% Similarity=0.162 Sum_probs=105.8
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCC---------C---hHHHHHHHHHHHcCCChHHHHHHHHhC-------CCCC------
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKP---------N---FAHYWCMANLYAGAELTEEAEEILRKM-------PEDN------ 391 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~---------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~------ 391 (523)
....++++...|...... ..| + +.+...+...+...|+.+.|..++++. ....
T Consensus 250 hs~sYeqaq~~F~~av~~--~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV--HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred cchHHHHHHHHHHHHHhh--cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 445677788777777663 222 2 334445556677888887777665543 2110
Q ss_pred -----CCCCchHHHHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHH-hcCChhHHHHHHHHHHh-
Q 038200 392 -----DNMSFESIMWVSL---LSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYA-VAGQWEDVARVRELMKK- 460 (523)
Q Consensus 392 -----~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~- 460 (523)
....-+...|.++ +....+.|=+..|.++.+.+.+++|. ||-....+++.|+ ++.+|.-.+++++..+.
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1111223344444 33466778899999999999999998 9999999999986 78889999999998843
Q ss_pred CCCccCCceeEEEeCCeEEEEecCCC--CchHHHHHHHHHHhccc
Q 038200 461 RRMGRMPGCRLVDLKEVVEKLKVGHF--WRGGMKEEVNKMMECRQ 503 (523)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 503 (523)
..+...|...+.. ..+..|+..+. .++.+...+.+.++.-|
T Consensus 408 n~l~~~PN~~yS~--AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 408 NKLSQLPNFGYSL--ALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ccHhhcCCchHHH--HHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5566667642222 23334444442 35567777777777665
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.76 E-value=13 Score=27.17 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNG 314 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 314 (523)
.++|..|-+.+...+-. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666666554322 22222233456778899999999999999899999987755 4678888888888888887
Q ss_pred CCCCCCcCCCHHHHHH
Q 038200 315 TVAGGSISPDEITFIG 330 (523)
Q Consensus 315 ~~~~~~~~p~~~~~~~ 330 (523)
| .|....|..
T Consensus 98 g------~p~lq~Faa 107 (115)
T TIGR02508 98 G------DPRLQTFVA 107 (115)
T ss_pred C------CHHHHHHHH
Confidence 6 566555543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.48 E-value=26 Score=31.29 Aligned_cols=86 Identities=10% Similarity=0.132 Sum_probs=40.5
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHh--
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAV-- 444 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~-- 444 (523)
|.+++..+++.+++..+-+--+....++|...-.-.+ .|.+.|......++...-....-+ +..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 4556666666666555433322222244443332222 255566665555555544432111 12235555544433
Q ss_pred ---cCChhHHHHHH
Q 038200 445 ---AGQWEDVARVR 455 (523)
Q Consensus 445 ---~g~~~~A~~~~ 455 (523)
.|.++||.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666654
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.52 E-value=0.94 Score=41.06 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=39.4
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|.+++|++.|...++. -++....+..-..++.+.+....|++-+..+++++|++..-|-.-..+....|+|++|..
T Consensus 127 ~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred Ccchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34444555444444432 122233333333344444444555555555555555444444444444444455555555
Q ss_pred HHHHHHhCCC
Q 038200 454 VRELMKKRRM 463 (523)
Q Consensus 454 ~~~~m~~~~~ 463 (523)
.+....+.++
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5544444444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.09 E-value=61 Score=33.50 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHH-HHHhhcCcHHHHH-----------HHHH
Q 038200 286 VCWNAMILGHCI---HGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVI-CACVRAELLTEGR-----------KYFR 349 (523)
Q Consensus 286 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll-~~~~~~~~~~~a~-----------~~~~ 349 (523)
.-+..||..|++ ..+..+|+++|--+.... .|+. ..+...+ ......++++.-+ -+++
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~------~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~ 398 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFK------DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIE 398 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-------SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHH
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceee
Confidence 456777777775 457788888887776643 1322 2222222 2222333222111 1222
Q ss_pred HhhHhcCCCC-ChHH---HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhcCC-----------
Q 038200 350 QMIDFYKIKP-NFAH---YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQGA----------- 413 (523)
Q Consensus 350 ~~~~~~~~~~-~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~----------- 413 (523)
+-.+..++.. .... ......-+...|++++|..+|.-+.+ ...-..+.+.++.- ......
T Consensus 399 ~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~----~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l 474 (613)
T PF04097_consen 399 RRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEE----YDKVLSLLNRLLSQVLSQPSSSSLSDSERERL 474 (613)
T ss_dssp HTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHcCccccccccchhhhH
Confidence 2111111222 2222 22334456678999999999988873 22223344444443 222222
Q ss_pred HHHHHHHHHHHhh-------cCCCChhhHHHHHHH-----HHhcCChhHHHHHHHHH
Q 038200 414 VAMVERLAKSFVD-------MDPQDFSRYQFLLNV-----YAVAGQWEDVARVRELM 458 (523)
Q Consensus 414 ~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 458 (523)
...|..+.+.... ..+....++..|... +...|+|++|++.++++
T Consensus 475 ~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 475 IELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 3445555444433 122233455544433 56789999998888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=83.07 E-value=5.5 Score=28.82 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..++..++.+|+|...-..++..+...|++++|++.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555677777777777777777777777777777777554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.97 E-value=33 Score=30.36 Aligned_cols=128 Identities=11% Similarity=0.047 Sum_probs=80.0
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA-MVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
..+-++.+.++.+. .+.+-.+|..--......|+.. .-+++.+.++..+..+..+|..--.++..-+.|+.-+.+.
T Consensus 94 L~~El~~l~eI~e~---npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 94 LNKELEYLDEIIED---NPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHh---CccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 44555566665543 2334445444433344445555 5567777777777778888888888888888899999999
Q ss_pred HHHHhCCCccCCcee--EEEeCCeEEEEecCC-CCchHHHHHHHHHHhcccCCccccc
Q 038200 456 ELMKKRRMGRMPGCR--LVDLKEVVEKLKVGH-FWRGGMKEEVNKMMECRQSRSLATV 510 (523)
Q Consensus 456 ~~m~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 510 (523)
.+|.+..+..++... ++.+.+. +...+ ...+.-+.-..+.++..|+|.-+-+
T Consensus 171 ~~Lle~Di~NNSAWN~Ryfvi~~~---~~~~~~~~le~El~yt~~~I~~vP~NeSaWn 225 (318)
T KOG0530|consen 171 DELLEEDIRNNSAWNQRYFVITNT---KGVISKAELERELNYTKDKILLVPNNESAWN 225 (318)
T ss_pred HHHHHHhhhccchhheeeEEEEec---cCCccHHHHHHHHHHHHHHHHhCCCCccHHH
Confidence 999888887777641 1111110 11111 2344456666678888888877765
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.61 E-value=21 Score=27.90 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHcCCCh---HHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 358 KPNFAHYWCMANLYAGAELT---EEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.++..+--.+..++.++.+. .+-+.+++++.+. -.|+ ..-..-|.-++.+.++++++.++.+.+++.+|++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~---~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS---AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh---cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45666666677788777654 4566788888742 1232 33334455578999999999999999999999876
Q ss_pred h
Q 038200 433 S 433 (523)
Q Consensus 433 ~ 433 (523)
.
T Consensus 106 Q 106 (149)
T KOG3364|consen 106 Q 106 (149)
T ss_pred H
Confidence 4
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.33 E-value=9 Score=32.34 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC-CchHHHHHHHHHHHHhcCCHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM-SFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
+.|.+.|-.+... +.--++.....|...|. ..+.+++..++.+..+....- .+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666554 44456666666666665 456777777777665543333 667777788888888888777663
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=81.88 E-value=3.6 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=10.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
...+...|+++.|...++..++..|
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444333
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=81.86 E-value=8 Score=27.46 Aligned_cols=64 Identities=9% Similarity=0.046 Sum_probs=37.5
Q ss_pred hHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHH
Q 038200 5 LQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQG 71 (523)
Q Consensus 5 ~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 71 (523)
..|++.+...|+- +......+-..--..|+.+.|++++..++ +....|...+.++...|.-.-|
T Consensus 22 ~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4566666666655 34444443333335566777777777766 6666666667766666654444
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.68 E-value=28 Score=28.64 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH-HHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA-HYW 365 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 365 (523)
.|..-++ +++.+..++|+.-|..+.+.|.. --|- ...........+.|+...|...|+++-.. .-.|-.. -..
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g---~Ypv-LA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~A 134 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYG---SYPV-LARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLA 134 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCC---cchH-HHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHH
Confidence 3443333 46778889999999999887711 1111 11222334466789999999999998775 3333221 111
Q ss_pred H--HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 366 C--MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 366 ~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
. -...+...|.++....-++-+... +.+.-...-..|.-+-.+.|++..|...|.++..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d--~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGD--GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCC--CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 223456789999888888877732 2233344445566677888999999999998876
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.90 E-value=7.4 Score=33.66 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
.+.+..+++.+..--++++++.|+.......|+..+.....+++|+..+.+.
T Consensus 53 chlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555555544
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=93 Score=34.02 Aligned_cols=92 Identities=5% Similarity=-0.036 Sum_probs=42.6
Q ss_pred chHHHHHHhhhhhhcCChHHHH-HHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQ-RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
+..+-...+.++...|..+.+. .+...+..++...-...+.++...+. .++...+..+.. .|+...-...
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--------D~~~~VR~~A 858 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--------DPHLDVRKAA 858 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--------CCCHHHHHHH
Confidence 4555555555555555544332 22333334454455555555555544 234444444443 2444444445
Q ss_pred HHHHhhcCcHHHHHHHHHHhhH
Q 038200 332 ICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~ 353 (523)
+.++.+......+...+..+.+
T Consensus 859 ~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 859 VLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhccCCCHHHHHHHHHHHh
Confidence 5555554333344444444444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.53 E-value=41 Score=29.82 Aligned_cols=201 Identities=9% Similarity=0.058 Sum_probs=91.5
Q ss_pred CCCcccHHHHHHH-HHhCCCchHHHHHHHHHHHCCCCCCcc---cHHHHHHHHHccCCchHHHHHHHHHHHh---CC--C
Q 038200 49 NPGTFCVNAVIKA-YSNSCVPDQGVVFYLQMIKNGFMPNSY---TFVSLFGSCAKTGCVERGGMCHGLALKN---GV--D 119 (523)
Q Consensus 49 ~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~ 119 (523)
+||+..-|..-.+ -.+...+++|+.-|++.++..-.--.. ....++....+.+++++....+.+++.. .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555543332221 123346677777777776642111111 2334555566666776666666665431 11 1
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChh----HHHHHHHHHH
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVV----SWNIMISGYS 195 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~ 195 (523)
.+..+.|++++.-..+.+.+.-..+++. .+..++..+ +.. |-.-|...|.
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeT------------------------TL~ALkdAK--NeRLWFKTNtKLgkl~f 156 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYET------------------------TLDALKDAK--NERLWFKTNTKLGKLYF 156 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHH------------------------HHHHHHhhh--cceeeeeccchHhhhhe
Confidence 1233444444444433333333222221 111111111 111 1223455556
Q ss_pred hcCCchHHHHHHHHHHHCCCC----CC-------HHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchHHHHHH---
Q 038200 196 KSGNPGCSLKLFREMMKSGFR----GN-------DKTMASVLTACGRSARFNEGRSVHGYTVRTS-LKPNIILDTAL--- 260 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~----p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l--- 260 (523)
..+.+.+..++++++.+..-. .| ...|..-+..|....+-.+-..+|++..... --|.+.+...+
T Consensus 157 d~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIREC 236 (440)
T KOG1464|consen 157 DRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIREC 236 (440)
T ss_pred eHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHc
Confidence 666666666666665432111 01 1345555666666666666666666655431 12333333222
Q ss_pred -hhhhhhcCChHHHHH
Q 038200 261 -IDLYSKCQKVEVAQR 275 (523)
Q Consensus 261 -~~~~~~~~~~~~a~~ 275 (523)
..++.+.|++++|..
T Consensus 237 GGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 237 GGKMHLREGEFEKAHT 252 (440)
T ss_pred CCccccccchHHHHHh
Confidence 234455667766643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 65.6 bits (158), Expect = 3e-11
Identities = 26/216 (12%), Positives = 67/216 (31%), Gaps = 13/216 (6%)
Query: 85 PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNM 144
P L ++ G + + + + + + A ++
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 145 FVQMSPR-------DLISWNSIVSGHVRSGDMSAAHELFDIMPER----NVVSWNIMISG 193
V + L +N+++ G R G + ++ + +++S+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 194 YSKSGN-PGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVH-GYTVRTSLK 251
+ G + +M + G + A +L+ R+ V +++ L
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 252 PNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287
P + L D+Y+K +V + + L
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 100/328 (30%)
Query: 244 YTVRTSLKPNIILDTALID-LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPE 302
V+ K IL ID + V R+F ++ K E
Sbjct: 36 KDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLS-----------------KQE 76
Query: 303 EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL---TEGRKYFRQMIDFYKIKP 359
E ++ F + + + + ++ E R Y Q Y
Sbjct: 77 EMVQKFV--------EEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 360 NFAHYWCMANLYAGAELTEEAEEILRKM-PEDN-------------------------DN 393
FA Y N+ + + + L ++ P N
Sbjct: 125 VFAKY----NVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 394 MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453
M F+ I W++L + + + M+++L +DP SR N+ +
Sbjct: 180 MDFK-IFWLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQA--E 233
Query: 454 VRELMKKRRMGRM-----------------PGCR-LV---DLKEVVEKLKVGHFWRGGMK 492
+R L+K + C+ L+ K+V + L +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLSAATTTHISL- 291
Query: 493 EEVNKMMECRQSRSL-ATV----SKQLP 515
+ + + + +SL + LP
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 7e-06
Identities = 66/469 (14%), Positives = 151/469 (32%), Gaps = 136/469 (28%)
Query: 118 VDFELPVM----NSLINMY-GCFGA-MDCARNMFVQMSPRDLISWNSIVSGHVRSGD-MS 170
+DFE +++++ F DC VQ P+ ++S + + S D +S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD---VQDMPKSILS-KEEIDHIIMSKDAVS 62
Query: 171 AAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRG--NDKTMASVLTA 228
LF + + + L++ + + S + +M + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEE---------VLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----------CQK----VEVAQ 274
R +N+ + Y V + L+P + L AL++L K ++V
Sbjct: 114 EQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 275 --RVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332
+V M + + W + L +C PE +++ L+ + D + I +
Sbjct: 173 SYKVQCKMDFK--IFW--LNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 333 CACVRAEL--LTEGRKY------------------F------------RQMIDFYKIKPN 360
++AEL L + + Y F +Q+ DF +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAA 284
Query: 361 FAHYWCMANLYAGAELTE-EAEEILRKMPEDNDNMSFESI---------MWVSLLS---- 406
+ + + LT E + +L K + + + +S+++
Sbjct: 285 TTTHISLDHHSMT--LTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 407 --LCRFQG----AVAMVERLAKSFVD-MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459
L + + + +S ++ ++P ++ + L+V+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-----PSA-------- 385
Query: 460 KRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLA 508
+ ++ L + W +K +V ++ SL
Sbjct: 386 -------------HIPTIL--LSL--IWFDVIKSDVMVVVNKLHKYSLV 417
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 39/208 (18%)
Query: 263 LYSKCQKVEVAQRVFD--SMADRNLV-CWNAMILGHCIH--GKPEEGIKLF-TALVNGTV 316
K E A+R + ++ W A GH + ++ + + TA
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIA--YGHSFAVESEHDQAMAAYFTAA----- 152
Query: 317 AGGSISPDEIT---FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC-MANLYA 372
+ +IG+ ++F Q + I P + +
Sbjct: 153 ---QLMKGCHLPMLYIGLEYG--LTNNSKLAERFFSQAL---SIAPEDPFVMHEVGVVAF 204
Query: 373 GAELTEEAEEILRK-------MPEDNDNMSFESI---MWVSLLSLCRFQGAVAMVERLAK 422
+ AE+ + + +E + + L ++ A+ +
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA-- 262
Query: 423 SFVDMDPQDFSRYQFLLNVYAVAGQWED 450
+ + PQ+ S Y + ++++ G +E+
Sbjct: 263 --LVLIPQNASTYSAIGYIHSLMGNFEN 288
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 37/205 (18%)
Query: 264 YSKCQKVEVAQRVFD--SMADRNLV-CWNAMILGHCIH--GKPEEGIKLF-TALVNGTVA 317
Y K+ A+R F S D W H G+ ++ I + TA
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGF--AHSFAIEGEHDQAISAYTTAA------ 434
Query: 318 GGSISPDEIT---FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC-MANLYAG 373
+ F+G+ ++ + +Y + + + +
Sbjct: 435 --RLFQGTHLPYLFLGM--QHMQLGNILLANEYLQSSY---ALFQYDPLLLNELGVVAFN 487
Query: 374 AELTEEAEEILRK----MPEDNDNMSFESIMW----VSLLSLCRFQGAVAMVERLAKSFV 425
+ A + + + N + W + L + A+ + + +
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG----L 543
Query: 426 DMDPQDFSRYQFLLNVYAVAGQWED 450
+ D + + + VY
Sbjct: 544 LLSTNDANVHTAIALVYLHKKIPGL 568
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 29/138 (21%)
Query: 339 ELLTEGRKYFRQMIDFYKIKPNFAH-YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE 397
EL+ + ++ + N +A+L+A A+ EEAE +K +
Sbjct: 314 ELIGHAVAHLKKAD---EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
Query: 398 SIMWVSLLSLCRFQG-----AVA--------------------MVERLAKSFVDMDPQDF 432
++ + + +Q A+ ++++AK + + D
Sbjct: 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADS 430
Query: 433 SRYQFLLNVYAVAGQWED 450
L + + + +
Sbjct: 431 EALHVLAFLQELNEKMQQ 448
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.9 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.82 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.73 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.51 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.49 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.38 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.35 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.35 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.23 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.06 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.04 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.97 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.84 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.69 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.63 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.61 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.56 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.53 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.43 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.42 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.25 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.1 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.07 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.86 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.77 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.36 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.16 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.92 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.83 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.82 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.31 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.53 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.08 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.9 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.69 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.38 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.24 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.22 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 91.1 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.88 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.5 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.21 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.07 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.26 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.99 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.68 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.41 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 87.41 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.75 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.69 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.32 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.86 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.56 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.3 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.98 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.81 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 84.25 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 83.9 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.98 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.7 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 81.18 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=335.95 Aligned_cols=431 Identities=8% Similarity=-0.045 Sum_probs=359.6
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGS 96 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 96 (523)
+++..++.++..|.+.|++++|+.+|+++. .|+..+|..++.+|.+.|++++|+.+|+.+... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 467788899999999999999999998875 467788888999999999999999999888653 6788889999999
Q ss_pred HHccCCchHHHHHHHHHHHh---------------CCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHH
Q 038200 97 CAKTGCVERGGMCHGLALKN---------------GVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP--R-DLISWNS 158 (523)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 158 (523)
+.+.|++++|..+|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.. | +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999988853211 1123467899999999999999999999998863 2 2223222
Q ss_pred H--------------------------------------HHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcC
Q 038200 159 I--------------------------------------VSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSG 198 (523)
Q Consensus 159 l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 198 (523)
+ +..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 2 4445678889999999999887 78889999999999999
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFD 278 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 278 (523)
++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765 4477788999999999999999999999998764 4578888999999999999999999999
Q ss_pred hcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc
Q 038200 279 SMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY 355 (523)
Q Consensus 279 ~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (523)
++.+ .+..+|+.++.+|.+.|++++|+++|+++.... +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 470 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL- 470 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 8743 467789999999999999999999999998864 457788999999999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 356 KIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 356 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
.+.++.+|..++.+|.+.|++++|.++|+++.+.. .+..|+ ..+|..++.+|...|++++|...++++.+.+|++
T Consensus 471 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 471 -FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44578889999999999999999999999886421 024666 7889999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999998775
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=325.34 Aligned_cols=428 Identities=8% Similarity=-0.011 Sum_probs=374.8
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccC--CCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCI--NNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMI 79 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 79 (523)
+.|..++..+... . |+...+..++.+|.+.|++++|+.+|+.+ .+++..+|+.++..|.+.|++++|+++|+++.
T Consensus 101 ~~A~~~~~~~~~~--~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 101 KCAAFVGEKVLDI--T-GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177 (597)
T ss_dssp HHHHHHHHHHHHH--H-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHhh--C-CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 3567778888754 4 67788899999999999999999999998 46889999999999999999999999999532
Q ss_pred HC---------------CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHH----------------
Q 038200 80 KN---------------GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL---------------- 128 (523)
Q Consensus 80 ~~---------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---------------- 128 (523)
.. +.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHH
Confidence 21 22345789999999999999999999999999987643 34443333
Q ss_pred ----------------------HHHHHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCC---
Q 038200 129 ----------------------INMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPE--- 181 (523)
Q Consensus 129 ----------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--- 181 (523)
+..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 336 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc
Confidence 5566788999999999999986 7999999999999999999999999999864
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
.+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 337 YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467889999999999999999999999998753 5578899999999999999999999999999864 34688999999
Q ss_pred hhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc
Q 038200 262 DLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA 338 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~ 338 (523)
.+|.+.|++++|+++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF------QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHh
Confidence 999999999999999998743 477899999999999999999999999999864 44688999999999999
Q ss_pred CcHHHHHHHHHHhhHhc---CCCCC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 339 ELLTEGRKYFRQMIDFY---KIKPN--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++.+. .+.+..+|..+..+|...|+
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL---STNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSCCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCC
Confidence 99999999999998742 45677 789999999999999999999999999854 24478899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
+++|.+.++++.+++|+++.++..++.+|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-29 Score=241.63 Aligned_cols=374 Identities=11% Similarity=0.044 Sum_probs=295.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777776666542 2233445555555566677777777777666654 23566677777777777777
Q ss_pred HHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 139 DCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 139 ~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
++|.+.|+++. +.+..+|..+..++.+.|++++|...|+++.+ | +...+..+...+...|++++|.++|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777777664 23445667777777777777777777776653 3 345677788888889999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHH
Q 038200 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWN 289 (523)
Q Consensus 213 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 289 (523)
.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3456788889999999999999999999998875 33577888899999999999999999987643 4578899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
.+...|...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+..
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 99999999999999999999999854 334678999999999999999999999999984 5667889999999
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
.+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.+|+++.+|..++.++...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999864 344577888999999999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-28 Score=232.20 Aligned_cols=354 Identities=12% Similarity=0.051 Sum_probs=312.8
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDM 169 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 169 (523)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++... +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999988543 66778888889999999999999998875 45778999999999999999
Q ss_pred HHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 038200 170 SAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 170 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
++|+..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999864 4 45679999999999999999999999999864 3345677788889999999999999999999
Q ss_pred HcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
+.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++.... .|
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p 234 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-------SP 234 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-------CT
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------Cc
Confidence 875 33678899999999999999999999999854 35678999999999999999999999999984 45
Q ss_pred -CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHH
Q 038200 324 -DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402 (523)
Q Consensus 324 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 402 (523)
+..++..+..++...|++++|...|+++.+. .+.++.+|..+..++.+.|++++|.+.++++.+. .+.+..++.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 309 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLN 309 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHH
Confidence 4778999999999999999999999999983 4446788999999999999999999999999864 355678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+...|++++|...++++.+..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=237.35 Aligned_cols=184 Identities=14% Similarity=0.223 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHcCCCCchH
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR---------FNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 255 (523)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45888999999999999999999999999999999999999999987554 788999999999999999999
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-----~~Pd~~ty~~L 181 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-----VVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCCHHHHHHH
Confidence 99999999999999999999999995 4899999999999999999999999999999999 99999999999
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
|.+|++.|+.++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999997 9999999999999998753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=232.46 Aligned_cols=203 Identities=10% Similarity=0.097 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC---------h
Q 038200 201 GCSLKLFREMMKSGFRGND-KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK---------V 270 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 270 (523)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566777777765543 46888999999999999999999999999999999999999999987765 6
Q ss_pred HHHHHHHHhcC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHH
Q 038200 271 EVAQRVFDSMA----DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRK 346 (523)
Q Consensus 271 ~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (523)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..||+.+|.+|++.|++++|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-----IQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCccceehHHHHHHHHCCCHHHHHH
Confidence 88999999995 4899999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
+|++|.+. |+.||..+|+.|+.+|++.|++++|.+++++|. ..+..|+..||+.++..|...
T Consensus 162 l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr--~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 162 VDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLR--DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH--HhCCCcCHHHHHHHHHHHhcC
Confidence 99999997 999999999999999999999999999999999 456899999999999887653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=224.12 Aligned_cols=428 Identities=8% Similarity=-0.054 Sum_probs=299.7
Q ss_pred hHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 038200 22 FWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK 99 (523)
Q Consensus 22 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 99 (523)
..+..+...+.+.|++++|+..|+++. .|+...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345555566666677777777766654 3566666666667777777777777777666643 3344566666666667
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCcchHHHH---HHHHHhcCCHHHH
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP----RDLISWNSI---VSGHVRSGDMSAA 172 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---l~~~~~~~~~~~a 172 (523)
.|++++|...|+.+.+.++ ++......++..+........+.+.+..+.. ++...+... ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777776666553 2444444444444433333333333322110 000000000 0000111111122
Q ss_pred HHHHhcCCC---------C-ChhHHHHHHHHHHh---cCCchHHHHHHHHHHH-----CCCC--------CCHHHHHHHH
Q 038200 173 HELFDIMPE---------R-NVVSWNIMISGYSK---SGNPGCSLKLFREMMK-----SGFR--------GNDKTMASVL 226 (523)
Q Consensus 173 ~~~~~~~~~---------~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~ll 226 (523)
...+..... | +...+......+.. .|++++|..+|+++.+ .... .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222211 1 24455555555554 8999999999999988 3112 2345778888
Q ss_pred HHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHH
Q 038200 227 TACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEE 303 (523)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 303 (523)
.++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8999999999999999999987644 88888999999999999999999998754 366789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 304 GIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 304 a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
|...|+++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.
T Consensus 323 A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 323 AGKDFDKAKELD------PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp HHHHHHHHHHTC------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999864 335678888999999999999999999999884 344678889999999999999999999
Q ss_pred HHhCCCCCCCCCch----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 384 LRKMPEDNDNMSFE----SIMWVSLLSLCRF---QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 384 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
++++.+.... .++ ...+..+...+.. .|++++|...++++.+..|+++.++..++.+|.+.|++++|...++
T Consensus 395 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENK-LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHT-SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhc-cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9988742111 111 3377888888999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038200 457 LMKKRR 462 (523)
Q Consensus 457 ~m~~~~ 462 (523)
+..+..
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 997754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=219.95 Aligned_cols=421 Identities=10% Similarity=-0.054 Sum_probs=315.2
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQM 78 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 78 (523)
+.|...+..+++.. |++.++..+..++.+.|++++|++.|+.+. +.+..+|..+..++.+.|++++|+..|+.+
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677788888775 589999999999999999999999999764 445678999999999999999999999999
Q ss_pred HHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHH---HHHHccCChHHHHHHHhhcC------
Q 038200 79 IKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLI---NMYGCFGAMDCARNMFVQMS------ 149 (523)
Q Consensus 79 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~------ 149 (523)
.+.+ +++......++..+........+.+.+..+...+..|+......-. ...........+...+....
T Consensus 100 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 100 SLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 9876 4566666666666655544444444444333222222111111110 11111112222222222222
Q ss_pred ---CC-CcchHHHHHHHHHh---cCCHHHHHHHHhcCCC----------------C-ChhHHHHHHHHHHhcCCchHHHH
Q 038200 150 ---PR-DLISWNSIVSGHVR---SGDMSAAHELFDIMPE----------------R-NVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 150 ---~~-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
.| +...+......+.. .|++++|...|+++.+ | +..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 11 23344444444444 8999999999887654 1 34678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---
Q 038200 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--- 282 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 282 (523)
+|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 999999864 448888999999999999999999999998875 34678899999999999999999999998743
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC--
Q 038200 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-- 360 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 360 (523)
.+...+..+...|...|++++|...++++.... +.+...+..+...+...|++++|...++++.+...-.++
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF------PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 466789999999999999999999999999853 335678889999999999999999999999874222222
Q ss_pred --hHHHHHHHHHHHc---CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 361 --FAHYWCMANLYAG---AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 361 --~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
...+..+...+.. .|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++..+
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 3488899999999 99999999999998853 233567788888999999999999999999999999888777
Q ss_pred HHH
Q 038200 436 QFL 438 (523)
Q Consensus 436 ~~l 438 (523)
..+
T Consensus 487 ~~~ 489 (514)
T 2gw1_A 487 QAI 489 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-24 Score=213.20 Aligned_cols=424 Identities=8% Similarity=-0.028 Sum_probs=318.4
Q ss_pred hhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 21 SFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 21 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
+..+..+...+.+.|++++|++.|+++. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4566677778888888888888888764 3466778888888888888888888888888764 44566777888888
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCCHHH
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR------DLISWNSIVSGHVRSGDMSA 171 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~ 171 (523)
...|++++|...++ ..... |+ .....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 88888888888885 33222 22 1122233444555567777777777532 22334455566667778888
Q ss_pred HHHHHhcCCCCChh---HHHHHHHHHHh--------cCCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhcc
Q 038200 172 AHELFDIMPERNVV---SWNIMISGYSK--------SGNPGCSLKLFREMMKSGFRGN--------DKTMASVLTACGRS 232 (523)
Q Consensus 172 a~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~~~~~ 232 (523)
+...+......+.. ....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhc
Confidence 88777777664332 33333333322 247899999999998753 43 23566777888899
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
|++++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4578888999999999999999999998754 467889999999999999999999999
Q ss_pred HHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 310 ALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+
T Consensus 335 ~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 335 KAQSLN------PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHC------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999854 334678889999999999999999999999984 445678899999999999999999999998764
Q ss_pred CCC---CCCchHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 390 DND---NMSFESIMWVSLLSLCRFQ----------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 390 ~~~---~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
... ........+......+... |++++|...++++.+.+|+++.++..++.+|.+.|++++|...|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 210 0111122344445667777 999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038200 457 LMKKRR 462 (523)
Q Consensus 457 ~m~~~~ 462 (523)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 997754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=206.30 Aligned_cols=327 Identities=9% Similarity=0.010 Sum_probs=238.0
Q ss_pred CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 86 NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 86 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
+...+..+...+.+.|++++|..+|+.+++..+. +..++..+..+|...|++++|...|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 4445555666666666666666666666655322 4555555555666555555555555554310
Q ss_pred cCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH----HHHHH------------HHHHH
Q 038200 166 SGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND----KTMAS------------VLTAC 229 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~------------ll~~~ 229 (523)
...+..+|..++.+|.+.|++++|...|+++.+.. |+. ..+.. +...+
T Consensus 90 --------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 90 --------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01234455556666666666666666666665532 222 23333 34457
Q ss_pred hccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
...|++++|...++.+.+.. +.+..++..++.+|...|++++|...|+++.+ .+..+|..++..|...|++++|+.
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 232 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999999988864 34678888899999999999999999988754 467889999999999999999999
Q ss_pred HHHHHHhCCCCCCCcCCCH-HHHHHH------------HHHHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPDE-ITFIGV------------ICACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMA 368 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~~-~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~ 368 (523)
.|+++... .|+. ..+..+ ...|...|++++|..+|+++.+. .|+ ...|..++
T Consensus 233 ~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 233 EVRECLKL-------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHh-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 99999874 4553 344443 78899999999999999999884 333 45788899
Q ss_pred HHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH-------
Q 038200 369 NLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV------- 441 (523)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------- 441 (523)
.++.+.|++++|.+.++++.+. .+.+...+..+..+|...|++++|...++++.+++|+++.++..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998753 234678899999999999999999999999999999999999998844
Q ss_pred -----HHhcC-----ChhHHHHHHHH
Q 038200 442 -----YAVAG-----QWEDVARVREL 457 (523)
Q Consensus 442 -----~~~~g-----~~~~A~~~~~~ 457 (523)
|...| +.+++.+.+++
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHH
Confidence 55555 45566777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=204.94 Aligned_cols=377 Identities=9% Similarity=0.004 Sum_probs=259.0
Q ss_pred hHHHHhccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHH
Q 038200 39 YTVLVFKCIN---NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALK 115 (523)
Q Consensus 39 ~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 115 (523)
.+...|.... +.+...|..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444443 2456689999999999999999999999999863 55778899999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC---c---chHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHH
Q 038200 116 NGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRD---L---ISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNI 189 (523)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 189 (523)
.++. +..++..+..+|.+.|++++|.+.|+++...+ . ..+..+...+.. ..+..
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~ 148 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRS 148 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHH
Confidence 8744 68899999999999999999999999986432 2 455555443211 11223
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK 269 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (523)
+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|+
T Consensus 149 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 149 QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3344555566666666666665542 3345555556666666666666666666665543 2345556666666666666
Q ss_pred hHHHHHHHHhcCC--C-ChHHHHH------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-----HHHHH
Q 038200 270 VEVAQRVFDSMAD--R-NLVCWNA------------MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-----EITFI 329 (523)
Q Consensus 270 ~~~a~~~~~~~~~--~-~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-----~~~~~ 329 (523)
+++|+..|+++.+ | +...+.. +...+...|++++|...|+++... .|+ ...+.
T Consensus 227 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~ 299 (450)
T 2y4t_A 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-------EPSIAEYTVRSKE 299 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCcchHHHHHHHH
Confidence 6666666665532 2 2233333 378888999999999999999884 355 34678
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHH--
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLS-- 406 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~-- 406 (523)
.+...+.+.|++++|...++++.+. .+.+...|..+..+|...|++++|.+.++++.+. .|+ ...+..+..
T Consensus 300 ~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 300 RICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH----NENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CcchHHHHHHHHHHH
Confidence 8888999999999999999998873 3446788999999999999999999999998853 443 445554442
Q ss_pred ----------HHHhcC-----CHHHHHHHHHH-HhhcCCCCh----------hhHHHHHHHHHhcCChhHH
Q 038200 407 ----------LCRFQG-----AVAMVERLAKS-FVDMDPQDF----------SRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 407 ----------~~~~~g-----~~~~a~~~~~~-~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A 451 (523)
.|...| +.+++.+.+++ +.+..|++. ..+..+..+|...|+.+++
T Consensus 374 ~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 233334 56777888886 666766521 2556667777776666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=209.89 Aligned_cols=437 Identities=8% Similarity=-0.040 Sum_probs=322.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINM 131 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (523)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|.+.++.+++.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567888999999999999999999999864 557788999999999999999999999999998744 78899999999
Q ss_pred HHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC------ChhHHHHHHHHHHhcCCchHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER------NVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
+...|++++|.+.|+.+. .+.......+..+...+....|...++++... ........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999997553 22222333344555666678888888887641 11122334455666667666665
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHhc--------cccHHHHHHHHHHHHHcCCCCc------hHHHHHHhhhhhhcCCh
Q 038200 206 LFREMMKSGFRGNDK-TMASVLTACGR--------SARFNEGRSVHGYTVRTSLKPN------IILDTALIDLYSKCQKV 270 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~-~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 270 (523)
.+..... ..+... ....+...+.. .|++++|..+++.+.+...... ..++..+...+...|++
T Consensus 182 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 5444332 122222 22333333222 2588999999999988643211 23566777888999999
Q ss_pred HHHHHHHHhcCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 271 EVAQRVFDSMAD--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 271 ~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
++|...|+++.+ |+...|..+...+...|++++|...|+++.... +.+..++..+...+...|++++|...+
T Consensus 260 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 260 LDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999854 567888999999999999999999999999854 345778999999999999999999999
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+++.+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+..
T Consensus 334 ~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 334 QKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999984 3445788999999999999999999999998864 23346678888889999999999999999999977
Q ss_pred CCChhh------HHHHHHHHHhc----------CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHH
Q 038200 429 PQDFSR------YQFLLNVYAVA----------GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMK 492 (523)
Q Consensus 429 p~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (523)
|+++.. +..++.+|... |++++|...+++..+... ..+. ....+.......++.++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~-----~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQ-----AKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHH-----HHHHHHHHHHHTTCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHH-----HHHHHHHHHHHhccHHHHH
Confidence 654433 45556888888 999999999999977532 1111 1111111222236889999
Q ss_pred HHHHHHHhcccCCccccc
Q 038200 493 EEVNKMMECRQSRSLATV 510 (523)
Q Consensus 493 ~~l~~~~~~~~~~~~~~~ 510 (523)
+.+++.++..|+......
T Consensus 483 ~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 483 ELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998776544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=175.75 Aligned_cols=317 Identities=9% Similarity=-0.036 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 038200 87 SYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRS 166 (523)
Q Consensus 87 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 166 (523)
...+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|+++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 345566666677777777777777777766433 5566666666666666666666666554310
Q ss_pred CCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCHHHHHH------------HHHHHhcc
Q 038200 167 GDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFR--GNDKTMAS------------VLTACGRS 232 (523)
Q Consensus 167 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~------------ll~~~~~~ 232 (523)
...+...|..+...+...|++++|...|++..+.... .+...+.. +...+...
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0013344555555555555555555555555553210 12222222 24667778
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+...+..+...+...|++++|...|+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888887764 34667777888888888888888888887644 356788888888888899999999998
Q ss_pred HHHhCCCCCCCcCCC-HHHHH------------HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh----HHHHHHHHHHH
Q 038200 310 ALVNGTVAGGSISPD-EITFI------------GVICACVRAELLTEGRKYFRQMIDFYKIKPNF----AHYWCMANLYA 372 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~-~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 372 (523)
+..+.. |+ ...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++.
T Consensus 213 ~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 213 ECLKLD-------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHH
T ss_pred HHHhhC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 888743 44 33222 23556788889999999998888741 2222 33556778888
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++.++..+..++...
T Consensus 284 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 899999999999888753 2335677888888888889999999999999999898888888777766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-20 Score=173.33 Aligned_cols=295 Identities=8% Similarity=0.030 Sum_probs=243.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 038200 154 ISWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACG 230 (523)
Q Consensus 154 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 230 (523)
..+..+...+...|++++|...|+++.+ .+..+|..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 3455566667777777777777777643 356788999999999999999999999999863 346788999999999
Q ss_pred ccccHHHHHHHHHHHHHcCCC--CchHHHHHH------------hhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 231 RSARFNEGRSVHGYTVRTSLK--PNIILDTAL------------IDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
..|++++|...++.+.+.... .+...+..+ ...+...|++++|...++++.+ .+...+..+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 162 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999999986420 244555544 5788999999999999998753 46788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH--------
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW-------- 365 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------- 365 (523)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+...+.
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK------SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHH
Confidence 9999999999999999999864 446788999999999999999999999999884 233334333
Q ss_pred ----HHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-H----HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 366 ----CMANLYAGAELTEEAEEILRKMPEDNDNMSFE-S----IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 366 ----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
.+...+.+.|++++|.+.++++.+. .|+ . ..+..+...+...|++++|...++++.+.+|+++.++.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKT----EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3366789999999999999998853 232 2 23455677899999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.++.+|...|++++|...+++..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999765
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-19 Score=167.60 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=192.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+..+...+...|++++|..+|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333334444444444444444444332 233444555556666666666666666666542 3345566666666666
Q ss_pred cc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 232 SA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 232 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
.| ++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|...
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66 6666777776666653 22455666667777777777777777766543 2345666677788888888888888
Q ss_pred HHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC-------CCCChHHHHHHHHHHHcCCChHHH
Q 038200 308 FTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK-------IKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
++++.... +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|
T Consensus 182 ~~~al~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 182 FSQALSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhC------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 88887753 33467777888888888888888888888776421 133467888888889999999999
Q ss_pred HHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH-hcCChh
Q 038200 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA-VAGQWE 449 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 449 (523)
.+.++++.+. .+.+...+..+...+...|++++|...++++.+++|+++.++..++.++. ..|+.+
T Consensus 256 ~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVL---IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHH---STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhh---CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999888753 23346677788888889999999999999999999988888888888884 555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-20 Score=173.77 Aligned_cols=258 Identities=12% Similarity=-0.041 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLY 264 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (523)
..+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555666666666666666665542 3344555555556666666666666666655543 22455555566666
Q ss_pred hhcCChHHHHHHHHhcCC--C-ChHHH----------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-
Q 038200 265 SKCQKVEVAQRVFDSMAD--R-NLVCW----------------NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD- 324 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~~--~-~~~~~----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~- 324 (523)
...|++++|...|+++.+ | +...+ ..+.. +...|++++|...|+++.... |+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-------p~~ 214 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLD-------PTS 214 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-------TTS
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-------cCc
Confidence 666666666666655432 1 11111 12333 338899999999999999854 44
Q ss_pred --HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHH
Q 038200 325 --EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWV 402 (523)
Q Consensus 325 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 402 (523)
..++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~ 289 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRY 289 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHH
Confidence 788999999999999999999999999884 3446789999999999999999999999998853 234577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCC-----------hhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQD-----------FSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
.+...+...|++++|...++++.++.|++ ..+|..++.+|...|++++|..++++
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 89999999999999999999999988876 78999999999999999999988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-17 Score=163.68 Aligned_cols=376 Identities=14% Similarity=0.027 Sum_probs=302.6
Q ss_pred HHHHhccC-CCCCcccHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCchHHHHHH
Q 038200 40 TVLVFKCI-NNPGTFCVNAVIKAYSN----SCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAK----TGCVERGGMCH 110 (523)
Q Consensus 40 A~~~~~~~-~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~ 110 (523)
+.+.+... ...+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...|
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 34444433 34577788888888888 899999999999998864 56677788888887 88999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHc----cCChHHHHHHHhhcCCC-CcchHHHHHHHHHh----cCCHHHHHHHHhcCCC
Q 038200 111 GLALKNGVDFELPVMNSLINMYGC----FGAMDCARNMFVQMSPR-DLISWNSIVSGHVR----SGDMSAAHELFDIMPE 181 (523)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~ 181 (523)
+...+.| +...+..|..+|.. .+++++|.+.|++.... +...+..+...|.. .+++++|...|++..+
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9998875 66777888888887 78999999999987643 66777778888877 7899999999988754
Q ss_pred -CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCC
Q 038200 182 -RNVVSWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 182 -~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 252 (523)
.+...+..+...|.. .+++++|..+|++..+.| +...+..+...+.. .+++++|..+|++..+.+
T Consensus 180 ~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 253 (490)
T 2xm6_A 180 QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--- 253 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---
T ss_pred CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 577888888888888 899999999999998865 55677777777765 789999999999998865
Q ss_pred chHHHHHHhhhhhh----cCChHHHHHHHHhcCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCCcC
Q 038200 253 NIILDTALIDLYSK----CQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIH-----GKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 253 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
+...+..+...|.. .++.++|...|++..+ .+...+..+...|... +++++|+..|++..+.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------- 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG------- 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-------
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-------
Confidence 45566677777777 8899999999998865 4667788888888887 89999999999998865
Q ss_pred CCHHHHHHHHHHHhhcC---cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCC
Q 038200 323 PDEITFIGVICACVRAE---LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMS 395 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~ 395 (523)
+...+..+...|...| +.++|.++|++..+. .++..+..|...|.. .+++++|.+.|++..+.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----- 396 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----- 396 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-----
Confidence 3456667777777656 889999999999884 367788889999988 89999999999998853
Q ss_pred chHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---ChhhHHHHHHHHHh
Q 038200 396 FESIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQ---DFSRYQFLLNVYAV 444 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 444 (523)
.+...+..+...|.. .++.++|...++++.+.+|+ ++.+...|+.++..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 245567777777877 79999999999999998854 66677777666554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-19 Score=163.81 Aligned_cols=269 Identities=12% Similarity=0.005 Sum_probs=232.2
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
.+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888899999999999999999998864 4455677778888999999999999999999875 34678888999
Q ss_pred hhhhhcC-ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 262 DLYSKCQ-KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 262 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...|+++.... +.+...+..+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT------TTCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHH
Confidence 9999999 99999999998754 356789999999999999999999999999854 3346677778999999
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC------CCCCchHHHHHHHHHHHHhc
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN------DNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ 411 (523)
.|++++|...++++.+ ..+.+...+..+...+...|++++|.+.++++.+.. ...+.....+..+...+...
T Consensus 172 ~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 172 TNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp TTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh
Confidence 9999999999999988 345568899999999999999999999998876421 00133456888899999999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..|+++.++..++.+|...|++++|...+++..+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-17 Score=158.66 Aligned_cols=363 Identities=10% Similarity=-0.021 Sum_probs=302.7
Q ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHc----cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHc----cCChHHH
Q 038200 70 QGVVFYLQMIKNGFMPNSYTFVSLFGSCAK----TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGC----FGAMDCA 141 (523)
Q Consensus 70 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 141 (523)
.++..++...+.| +...+..+...+.. .+++++|...++...+.| +...+..|...|.. .+++++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455666655543 66677777777776 789999999999998875 67788889999998 8999999
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHHh----cCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCCchHHHHHHHHHH
Q 038200 142 RNMFVQMSP-RDLISWNSIVSGHVR----SGDMSAAHELFDIMPE-RNVVSWNIMISGYSK----SGNPGCSLKLFREMM 211 (523)
Q Consensus 142 ~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~ 211 (523)
.+.|++..+ .+...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+++|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999999874 467778888888888 8899999999998765 467788888888887 889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----cCChHHHHHHHHhcCC-
Q 038200 212 KSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----CQKVEVAQRVFDSMAD- 282 (523)
Q Consensus 212 ~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~- 282 (523)
+.| +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 67778888888877 899999999999999875 55677778888876 7899999999999765
Q ss_pred CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc-----CcHHHHHHHHHHhhH
Q 038200 283 RNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA-----ELLTEGRKYFRQMID 353 (523)
Q Consensus 283 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~ 353 (523)
.+...+..+...|.. .++.++|+.+|++..+.+ +...+..+...|... +++++|..+|++..+
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 466778888888887 899999999999998765 445667777777776 899999999999988
Q ss_pred hcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 038200 354 FYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVAMVERLAKSFVD 426 (523)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 426 (523)
. + +...+..|...|...| ++++|.++|++..+. .+...+..+...|.. .++.++|..+++++.+
T Consensus 325 ~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 325 Q-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp T-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred c-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 4 3 4567778888888767 789999999999853 346677788888888 8999999999999988
Q ss_pred cCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 427 MDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 427 ~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
.+ ++.++..|+.+|.. .+++++|...|++..+.+.
T Consensus 396 ~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 396 QG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 57899999999998 8999999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-19 Score=164.63 Aligned_cols=288 Identities=14% Similarity=0.071 Sum_probs=102.2
Q ss_pred hccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHH
Q 038200 32 ADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHG 111 (523)
Q Consensus 32 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 111 (523)
.+.|++++|.+++++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999997664 999999999999999999999965 3677799999999999999999999888
Q ss_pred HHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHH
Q 038200 112 LALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMI 191 (523)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 191 (523)
...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77774 44578889999999999999998877753 66668888888888888888888888776 3677777
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChH
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVE 271 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 271 (523)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.-..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~------------- 211 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE------------- 211 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH-------------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH-------------
Confidence 7777777777777777766 25667777777777777777774332221 11111122
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc--CcHHHHHHHHH
Q 038200 272 VAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRA--ELLTEGRKYFR 349 (523)
Q Consensus 272 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~ 349 (523)
.++..|.+.|++++|..+++...... +-....|+.|.-.|++- ++..+.++.|.
T Consensus 212 ------------------~lv~~Yek~G~~eEai~lLe~aL~le------~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 212 ------------------ELINYYQDRGYFEELITMLEAALGLE------RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp ------------------HHHHHHHHTTCHHHHHHHHHHHTTST------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred ------------------HHHHHHHHCCCHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444555555555555555554321 12233444443333332 22333333222
Q ss_pred HhhHhcCCCC------ChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 350 QMIDFYKIKP------NFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 350 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.-.++| +...|.-++..|...++++.|....-+-.
T Consensus 268 ---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 268 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp ---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred ---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence 2112222 45677788888888888888877655443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-17 Score=162.97 Aligned_cols=410 Identities=10% Similarity=0.028 Sum_probs=280.2
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLF 94 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 94 (523)
|.+..++..++.. .+.|++++|..+|+++.. .+...|..++..+.+.|++++|..+|+++... .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 5688899999984 778999999999998753 35567999999999999999999999999986 47777777766
Q ss_pred HHH-HccCCchHHHH----HHHHHHHh-CCCC-CchHHHHHHHHHHc---------cCChHHHHHHHhhcCC-CCc---c
Q 038200 95 GSC-AKTGCVERGGM----CHGLALKN-GVDF-ELPVMNSLINMYGC---------FGAMDCARNMFVQMSP-RDL---I 154 (523)
Q Consensus 95 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~ 154 (523)
... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |+. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 543 34577777665 77776653 5443 45677777776654 5778888888888764 211 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH------HHCC---CCCCH------
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREM------MKSG---FRGND------ 219 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m------~~~~---~~p~~------ 219 (523)
.|..........+. ..+..++. ...+++..|..++..+ .+.. ++|+.
T Consensus 167 ~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 167 LWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 22221111000010 11111111 1233455565555542 1211 23331
Q ss_pred --HHHHHHHHHHhc----cccH----HHHHHHHHHHHHcCCCCchHHHHHHhhhhhh-------cCChH-------HHHH
Q 038200 220 --KTMASVLTACGR----SARF----NEGRSVHGYTVRTSLKPNIILDTALIDLYSK-------CQKVE-------VAQR 275 (523)
Q Consensus 220 --~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~ 275 (523)
..|...+..... .++. ..+..+|++++... +.+..+|..++..+.. .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 234333322211 1222 36677888888763 3467788888877775 68877 8899
Q ss_pred HHHhcCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH--HHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 276 VFDSMAD---R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE--ITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 276 ~~~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
+|++..+ | +...|..++..+...|++++|..+|+++++. .|+. ..|..++..+.+.|++++|..+|+
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-------cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9988764 3 4678888889999999999999999999884 4542 478888888888899999999999
Q ss_pred HhhHhcCCCCChHHHHHHHHH-HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 350 QMIDFYKIKPNFAHYWCMANL-YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+..+. .+.+...|...+.. +...|+.++|..+|++..+. .+.+...|..++..+...|+.++|..+|+++++..
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 98873 22233444333322 33589999999999988753 23357788888888888999999999999999877
Q ss_pred CCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 429 PQDFS----RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 429 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|.++. .|...+......|+.+.+..+++++.+.
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65554 7777788888889999999998888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-17 Score=163.50 Aligned_cols=399 Identities=10% Similarity=0.025 Sum_probs=277.4
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCchhHHHHhccCC--CCCcccHHHHHHHH-HhCCCchHHHH----H
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSPDYTVLVFKCIN--NPGTFCVNAVIKAY-SNSCVPDQGVV----F 74 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~-~~~~~~~~a~~----~ 74 (523)
+.++.+++.+++. .|.++..|..++..+.+.|++++|+++|++.. .|+...|...+... ...|+++.|.+ +
T Consensus 29 ~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 29 DKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 4577888888765 35789999999999999999999999999875 36777777777533 45688887766 7
Q ss_pred HHHHHH-CCCCCC-cccHHHHHHHHHc---------cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHH
Q 038200 75 YLQMIK-NGFMPN-SYTFVSLFGSCAK---------TGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARN 143 (523)
Q Consensus 75 ~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 143 (523)
|+.... .|..|+ ...|...+....+ .|+++.|..+|++.++.........|..........|. ..+..
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHH
Confidence 777665 355544 4566666666544 68899999999999873111112334333322111111 11222
Q ss_pred HHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhc----------CC---CCC--------hhHHHHHHHHHHhc----C
Q 038200 144 MFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI----------MP---ERN--------VVSWNIMISGYSKS----G 198 (523)
Q Consensus 144 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----------~~---~~~--------~~~~~~li~~~~~~----~ 198 (523)
++.. +.++++.|..++.. .. .|+ ...|...+...... +
T Consensus 186 ~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 186 MIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2211 12334444433332 11 122 24555555433322 2
Q ss_pred Cc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cccHH-------HHHHHHHHHHHcCCCCchHHHHHH
Q 038200 199 NP----GCSLKLFREMMKSGFRGNDKTMASVLTACGR-------SARFN-------EGRSVHGYTVRTSLKPNIILDTAL 260 (523)
Q Consensus 199 ~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 260 (523)
+. ..+..+|++.+.. .+.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...+..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 32 3777889888875 24466777777777764 68877 899999999863234468889999
Q ss_pred hhhhhhcCChHHHHHHHHhcCC--C-Ch-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH-H
Q 038200 261 IDLYSKCQKVEVAQRVFDSMAD--R-NL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA-C 335 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~-~ 335 (523)
+..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...... +
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~------~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT------TCCTHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc------CCchHHHHHHHHHHH
Confidence 9999999999999999998754 3 33 589999999999999999999999999853 2223333332222 3
Q ss_pred hhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHHhcCC
Q 038200 336 VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 413 (523)
...|+.++|..+|++..+. .+.++..|..++..+.+.|+.++|..+|++...... ..|+ ...|...+......|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~-~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-LPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-SCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999999999884 344688999999999999999999999999885321 2343 5578888888889999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 038200 414 VAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~ 430 (523)
.+.+..+.+++.+..|+
T Consensus 479 ~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 479 LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHCch
Confidence 99999999999998874
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=169.11 Aligned_cols=264 Identities=11% Similarity=-0.047 Sum_probs=203.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+...|..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34557777777788888888888888877753 3466677777788888888888888888877764 335677777888
Q ss_pred hhhhcCChHHHHHHHHhcCCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMADRN-------------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+|...|++++|+..|+++.+.+ ...+..+...+...|++++|...|+++..... ..++..++.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~ 217 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG----DMIDPDLQT 217 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSC----SSCCHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc----CccCHHHHH
Confidence 8888888888888887765411 22344567889999999999999999998540 111578899
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...|++++|...|+++.+. .+.+..+|..+..+|...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence 9999999999999999999999984 4556889999999999999999999999998853 2334788889999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038200 410 FQGAVAMVERLAKSFVDMDPQ------------DFSRYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
..|++++|...++++.++.|+ +..++..++.++...|+.+.+..+.++
T Consensus 293 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999999998765 367899999999999999988877653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-16 Score=162.58 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=279.5
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC-CCC-----cccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN-NPG-----TFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
.+|.--...+..|...|.+.+|+++++++. .++ ....+.++....+. +..+..+..+..... ....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 455555666777777888888888887765 222 23455566666665 445555555544421 1334
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAA 172 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 172 (523)
+...|...|.+++|..+|++.. -.....+.++ -..+++++|.++.++. .+..+|..+..++...|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHH
Confidence 6677778888888888888751 1122223332 2677888888888876 3467788899999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 038200 173 HELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP 252 (523)
Q Consensus 173 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 252 (523)
+..|.+. .|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999775 567788889999999999999999998877754 33333445888888888888644442 2 34
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll 332 (523)
+...+..+...|...|++++|..+|..+ ..|..+...|++.|++++|.+.+++. .+..+|..+-
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----------NSTRTWKEVC 1257 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----------CCHHHHHHHH
Confidence 5566667889999999999999999985 48999999999999999999999865 3456888888
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH--h
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR--F 410 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 410 (523)
.+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++...... +-....|.-+...+. +
T Consensus 1258 ~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---hhHhHHHHHHHHHHHhCC
Confidence 89999999988888666433 367788899999999999999999999887421 234455555555554 4
Q ss_pred cCCHHHHHHHHHHHhhcCC-----CChhhHHHHHHHHHhcCChhHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDP-----QDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.++..++.+.|..-..+.| .+...|..+...|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4667777788877666655 577789999999999999999983
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-17 Score=150.22 Aligned_cols=273 Identities=12% Similarity=0.058 Sum_probs=215.8
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERN----VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 236 (523)
+-....|++..|+..++.....+ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33456788888888888766533 23445677899999999999876654 23567778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038200 237 EGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 237 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 315 (523)
+|.+.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999998876444 566777788999999999999999998 567889999999999999999999999999984
Q ss_pred CCCCCcCCCHHHH---HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 316 VAGGSISPDEITF---IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 316 ~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.|+.... ...+..+...|++++|..+|+++.+. .+.++..++.+..++.+.|++++|.+.++++.+.
T Consensus 160 ------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-- 229 (291)
T 3mkr_A 160 ------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-- 229 (291)
T ss_dssp ------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 4664322 22334445569999999999999984 5668899999999999999999999999998864
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAM-VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
.+.+..++..++..+...|+.++ +.++++++.+.+|+++.+. ....+.+.++++..-|
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 23357788888888999999865 6799999999999887544 3455556666655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=157.83 Aligned_cols=260 Identities=8% Similarity=-0.067 Sum_probs=184.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34444555555555555555555555432 2244455555555555555555555555555543 224445555555555
Q ss_pred hcCChHHHHHHHHhcCC--C-ChHHHHH-------------H-HH-HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 266 KCQKVEVAQRVFDSMAD--R-NLVCWNA-------------M-IL-GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~--~-~~~~~~~-------------l-i~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
..|++++|...++++.+ | +...+.. + .. .+...|++++|...++++.... +.+...
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~ 174 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN------PNDAQL 174 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS------TTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC------CCCHHH
Confidence 55555555555555432 1 1111111 1 22 3677889999999999998854 346778
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHH
Confidence 889999999999999999999999884 3446788999999999999999999999998753 23457788888899
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC------------ChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 408 CRFQGAVAMVERLAKSFVDMDPQ------------DFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+...|++++|...++++.+..|. ++.++..++.+|...|++++|..++++.
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999999998 6889999999999999999999988744
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.5e-18 Score=159.44 Aligned_cols=287 Identities=9% Similarity=0.004 Sum_probs=159.2
Q ss_pred CCCchHHHH-HHHHHHHCCC-CC--CcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH
Q 038200 65 SCVPDQGVV-FYLQMIKNGF-MP--NSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 65 ~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 140 (523)
.|++++|++ .|++...... .| +...+..+...+...|++++|...++.+++..+. +..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 466777776 6665443210 11 3445666777777777777777777777766433 55666666666666666666
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 038200 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 141 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 220 (523)
|.+.|+++... ...+..++..+...+...|++++|...++++.+... .+..
T Consensus 117 A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 167 (368)
T 1fch_A 117 AISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAH 167 (368)
T ss_dssp HHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGG
T ss_pred HHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHH
Confidence 66666554210 012344555566666666666666666666665421 1111
Q ss_pred HHHH---------------HHHHHhccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC--
Q 038200 221 TMAS---------------VLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-- 282 (523)
Q Consensus 221 ~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 282 (523)
.+.. .+..+...|++++|...++++.+..... +..++..+...|...|++++|+..|+++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 247 (368)
T 1fch_A 168 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247 (368)
T ss_dssp GCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1110 1222236677777777777776654221 355666666666666666666666666532
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC---
Q 038200 283 -RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK--- 358 (523)
Q Consensus 283 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--- 358 (523)
.+..+|..+...+...|++++|...|+++.... +.+...+..+..++.+.|++++|...|+++.+...-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 345566666666666777777777776666632 2235566666666666677777776666665531000
Q ss_pred ------CChHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 359 ------PNFAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 359 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
....+|..+..+|...|++++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 01455666666666666666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-17 Score=160.35 Aligned_cols=378 Identities=9% Similarity=-0.068 Sum_probs=198.5
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCCchHHHHHHHHHHHhC------
Q 038200 52 TFCVNAVIKAYSNSCVPDQGVVFYLQMIKN-----G--FMP-NSYTFVSLFGSCAKTGCVERGGMCHGLALKNG------ 117 (523)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 117 (523)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777777777777777765431 1 122 23466677777777777777777777665421
Q ss_pred CCC-CchHHHHHHHHHHcc--CChHHHHHHHhhcC--CC-CcchHHHHHHH---HHhcCCHHHHHHHHhcCCC---CChh
Q 038200 118 VDF-ELPVMNSLINMYGCF--GAMDCARNMFVQMS--PR-DLISWNSIVSG---HVRSGDMSAAHELFDIMPE---RNVV 185 (523)
Q Consensus 118 ~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~--~~-~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~---~~~~ 185 (523)
..+ ...++..+..++... +++++|++.|++.. .| +...+..+..+ +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 011 123444444333332 34566666666554 22 23333333222 2233444444444444322 2233
Q ss_pred HHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 186 SWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 186 ~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
++..+...+.. .+++++|.+++++..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333322 234455555555554432 2234444555555555555555555555555442 12333444444
Q ss_pred hhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcH
Q 038200 262 DLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELL 341 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (523)
.+|...+....+ . .. ..........+..+.|...+++..... +.+..++..+...+...|++
T Consensus 289 ~~y~~~~~~~~~-----~-~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 289 CCYRAKVFQVMN-----L-RE------NGMYGKRKLLELIGHAVAHLKKADEAN------DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHH-----C-------------CHHHHHHHHHHHHHHHHHHHHHC------TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhh-----H-HH------HHHHHHHHHHhhHHHHHHHHHHHhhcC------CchhhhhhhHHHHHHHhccH
Confidence 333221100000 0 00 000000111234677888888888753 23455778888899999999
Q ss_pred HHHHHHHHHhhHhcCCCCCh--HHHHHHHH-HHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNF--AHYWCMAN-LYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVE 418 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 418 (523)
++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++..+ +.|+..... +....+.
T Consensus 351 ~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~~---------~~~~~l~ 416 (472)
T 4g1t_A 351 EEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREKE---------KMKDKLQ 416 (472)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHHH---------HHHHHHH
Confidence 9999999998874 322221 12333333 24578999999999999875 455533222 2234556
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 419 RLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 419 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
.++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 778888899999999999999999999999999999999887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=149.37 Aligned_cols=265 Identities=14% Similarity=0.052 Sum_probs=139.4
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 98 (523)
+++.+|..|..++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++. .+++.+.+.++.+|.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 35679999999999999999999999764 67779999999999999999999987777664 566788999999999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhc
Q 038200 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDI 178 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 178 (523)
+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..+..++.+.|++++|.+.+.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999988875 367789999999999999999999999988 5899999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHH
Q 038200 179 MPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDT 258 (523)
Q Consensus 179 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (523)
+. ++.+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++...... +....+|+
T Consensus 174 A~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ft 245 (449)
T 1b89_A 174 AN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 245 (449)
T ss_dssp HT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHH
T ss_pred cC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHH
Confidence 94 899999999999999999999665543 22344445578899999999999999999998765 45678888
Q ss_pred HHhhhhhhc--CChHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCChHHHHHH
Q 038200 259 ALIDLYSKC--QKVEVAQRVFDSMAD--------RNLVCWNAMILGHCIHGKPEEGIKL 307 (523)
Q Consensus 259 ~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~ 307 (523)
-|.-+|++- +++.+.++.|..-.. .+...|..+.-.|...++++.|...
T Consensus 246 el~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 887777764 455666666654433 2456799999999999999998774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-17 Score=155.49 Aligned_cols=233 Identities=6% Similarity=-0.091 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..+|...|++++|+..|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999875 44788999999999999999999999998854 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----------HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----------ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
|...|++++|...|+++.+.. |+. ..+..+...+...|++++|..+++++.+.....++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 215 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-------PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-------ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHH
Confidence 999999999999999998843 442 22334577889999999999999999985222226889
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...|...|++++|.+.++++.+. .+.+..++..+..++...|++++|...++++++..|+++.++..++.+|.
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 292 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI 292 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 999999999999999999999998864 24457889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
+.|++++|...+++..+.
T Consensus 293 ~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 293 NLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHTCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999999775
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-17 Score=148.30 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=204.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKSGFRGND--KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999988876543 3443 3556778999999999999986654 24567888899999999999
Q ss_pred ChHHHHHHHHhcC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 269 KVEVAQRVFDSMA----DR-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 269 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
+.++|++.++++. .| +...+..+...+...|++++|++.+++ + .+...+..++..+.+.|++++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~-------~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G-------DSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C-------CSHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C-------CCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999863 24 566778888999999999999999986 2 567788899999999999999
Q ss_pred HHHHHHHhhHhcCCCCChHH---HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAH---YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERL 420 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 420 (523)
|.+.|+++.+. .|+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...
T Consensus 149 A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 149 ARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999985 354321 123445556679999999999999864 456788899999999999999999999
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHhCC
Q 038200 421 AKSFVDMDPQDFSRYQFLLNVYAVAGQWED-VARVRELMKKRR 462 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 462 (523)
++++++.+|+++.++..++.++...|++++ +.++++++.+..
T Consensus 223 l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999986 578889887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-14 Score=150.76 Aligned_cols=398 Identities=10% Similarity=0.061 Sum_probs=294.2
Q ss_pred HhHHHHHHHHhC--CCCCChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 038200 4 LLQIQAHLITSG--LFFNNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN 81 (523)
Q Consensus 4 ~~~i~~~~~~~g--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 81 (523)
+..+.+.++-.+ .. .+....+.|+....+. +..+..+..+++..-+ ...+...+...|.+++|..+|++...
T Consensus 1004 aieLLEKivl~~s~fs-~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~- 1077 (1630)
T 1xi4_A 1004 LIELLEKIVLDNSVFS-EHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV- 1077 (1630)
T ss_pred HHHHHHHHHcCCCccc-ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-
Confidence 445555555221 12 3556777777666665 4566666665554333 45578888999999999999998631
Q ss_pred CCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHH
Q 038200 82 GFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVS 161 (523)
Q Consensus 82 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~ 161 (523)
.....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|.+.|.+. .|...|..++.
T Consensus 1078 ----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~ 1142 (1630)
T 1xi4_A 1078 ----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQ 1142 (1630)
T ss_pred ----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHH
Confidence 1112233333 668899999998855 25789999999999999999999999775 67888899999
Q ss_pred HHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR 239 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 239 (523)
.+.+.|++++|.+.|....+ ++....+.++.+|++.++++....+. + .++...|..+...|...|++++|.
T Consensus 1143 ~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1143 AANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999987654 34344456899999999888544332 2 456677778999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038200 240 SVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGG 319 (523)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 319 (523)
.+|..+ ..|..+...|.+.|+++.|.+.+++. .+..+|..+..+|...|++..|......
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~--------- 1275 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH--------- 1275 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh---------
Confidence 999874 47889999999999999999999987 4678999999999999999999887654
Q ss_pred CcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc--CCChHHHHHHHHhCCCCCCCCCc-
Q 038200 320 SISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG--AELTEEAEEILRKMPEDNDNMSF- 396 (523)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~- 396 (523)
+..++..+..++..|.+.|.+++|+.+++..... -+-....|+-|..+|++ -++..++.+.|..-.. ++|
T Consensus 1276 -Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rin----i~k~ 1348 (1630)
T 1xi4_A 1276 -IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN----IPKV 1348 (1630)
T ss_pred -hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc----cchH
Confidence 2345556778999999999999999999888753 13345667667666665 4566677777765542 333
Q ss_pred -----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh------------cCCCChhhHHHHHHHHHhcC-------------
Q 038200 397 -----ESIMWVSLLSLCRFQGAVAMVERLAKSFVD------------MDPQDFSRYQFLLNVYAVAG------------- 446 (523)
Q Consensus 397 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g------------- 446 (523)
+...|..+...|.+.|+++.|....-.-.. ..+.+++.|...+..|...+
T Consensus 1349 ~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~ 1428 (1630)
T 1xi4_A 1349 LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSP 1428 (1630)
T ss_pred hHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhh
Confidence 467788888889999999988833222111 14557788888888887766
Q ss_pred --ChhHHHHHHH
Q 038200 447 --QWEDVARVRE 456 (523)
Q Consensus 447 --~~~~A~~~~~ 456 (523)
+.+.+.++|.
T Consensus 1429 rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1429 RLDHTRAVNYFS 1440 (1630)
T ss_pred cCChHHHHHHHH
Confidence 6777776666
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-17 Score=151.77 Aligned_cols=263 Identities=9% Similarity=0.022 Sum_probs=156.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 155 SWNSIVSGHVRSGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
.+..+...+...|++++|..+|+++.+ .+...|..+..++...|++++|...++++.+.. +.+..++..+..++..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334444444455555555555554432 244555555666666666666666666665542 2344555556666666
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHH--------------hh-hhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTAL--------------ID-LYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
.|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++.+ .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 66666666666666554321 22222222 22 35566667777777766533 34566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
.|...|++++|...++++.... +.+..++..+...+...|++++|...++++.+. .+.+...+..+...|..
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 7777777777777777777643 234566777777777777777777777777663 23356677777777777
Q ss_pred CCChHHHHHHHHhCCCCCCC---------CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 374 AELTEEAEEILRKMPEDNDN---------MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
.|++++|.+.++++.+.... ...+...+..+..++...|+.++|..+++++++.
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77777777777776532110 0003566667777777777777777777665553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.2e-16 Score=151.39 Aligned_cols=381 Identities=8% Similarity=-0.031 Sum_probs=236.4
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCC-----------C-CCcccHHHHHHHHHhCCCchHHHHHHHHHHHC-----
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCIN-----------N-PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKN----- 81 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 81 (523)
.....|+.|..++...|++++|++.|++.. . ....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 445678999999999999999999997531 1 24567999999999999999999999987642
Q ss_pred C-CCC-CcccHHHHHHHHHc--cCCchHHHHHHHHHHHhCCCCCchHHHHHHHHH---HccCChHHHHHHHhhcC---CC
Q 038200 82 G-FMP-NSYTFVSLFGSCAK--TGCVERGGMCHGLALKNGVDFELPVMNSLINMY---GCFGAMDCARNMFVQMS---PR 151 (523)
Q Consensus 82 ~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~---~~ 151 (523)
+ ..+ ...++.....++.. .+++++|+..|++.++..+. +...+..+..++ ...++.++|++.+++.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 111 23355555555544 45789999999999998644 566666665553 45677788888887764 34
Q ss_pred CcchHHHHHHHHHh----cCCHHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 038200 152 DLISWNSIVSGHVR----SGDMSAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMAS 224 (523)
Q Consensus 152 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 224 (523)
+...+..+...+.. .+++++|.+++++... .+..++..+...|...|++++|...+++..+.. +-+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 55666666555544 4678899999988653 467789999999999999999999999998853 335566666
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCCh
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKP 301 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 301 (523)
+..+|...+....+ .. ...........+.++.|...|++..+ .+..++..+...|...|++
T Consensus 287 lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 66665432211110 00 00111111122335667777776533 3456788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHH----HHHHHHH-HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEI----TFIGVIC-ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
++|+..|++..... |+.. .+..+.. .....|+.++|+..|++..+ +.|+.......
T Consensus 351 ~~A~~~~~kaL~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~--------- 411 (472)
T 4g1t_A 351 EEAEYYFQKEFSKE-------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM--------- 411 (472)
T ss_dssp HHHHHHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------
T ss_pred HHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------
Confidence 99999999988854 3322 2222322 23467899999999998876 34543332222
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
...+.+++++.... .+.+..+|..+...+...|++++|.+.|+++++++|.+|.+..-++
T Consensus 412 ~~~l~~~~~~~l~~---~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 KDKLQKIAKMRLSK---NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHH---CC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334445544432 2445678888888999999999999999999999888777665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-16 Score=137.52 Aligned_cols=228 Identities=6% Similarity=-0.065 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--CchHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLK--PNIILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 263 (523)
.|..+...+...|++++|..+|++..+.. .+...+..+..++...|++++|...++.+.+.... ++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 44455555555555555555555555543 44445555555555555555555555544432100 0000
Q ss_pred hhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
....+|..+...|...|++++|...|+++... .|+. ..+...|++++
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE-------HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-------Cchh-------HHHHHHhHHHH
Confidence 00456677777888888888888888888773 4553 33555677888
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKS 423 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 423 (523)
|...++++.. ..+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888876 33345667778888888888888888888888753 233567777888888888888889888888
Q ss_pred HhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 424 FVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 424 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 199 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888888888888888888889998888888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-16 Score=139.64 Aligned_cols=237 Identities=11% Similarity=-0.043 Sum_probs=170.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC--CCC----HHHHHH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF--RGN----DKTMAS 224 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 224 (523)
...|..+...+...|++++|...|+++.+ .+...|..+..++...|++++|...+++..+... .++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34677888899999999999999988643 6788899999999999999999999999887431 112 477888
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 304 (523)
+..++...|++++|...++.+.+.. |+. ..+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 8888899999999999998888754 331 123344556666
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHH
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEIL 384 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 384 (523)
...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.+
T Consensus 125 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 125 LKKAEAEAYVN------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHCC------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcC------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 66666666632 223445666666677777777777777777663 3335666777777777777777777777
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHH
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLN 440 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 440 (523)
+++.+. .+.+...+..+...+...|++++|...++++.++. |++..++..+..
T Consensus 197 ~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 197 NKAIEK---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 777643 13345666777777777888888888888887777 666655555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-18 Score=170.05 Aligned_cols=148 Identities=8% Similarity=0.039 Sum_probs=124.8
Q ss_pred ChhHHHHHHHHhhccCCchhHHHHhccCC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHH
Q 038200 20 NSFWTINLLKHSADFGSPDYTVLVFKCIN-------NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVS 92 (523)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 92 (523)
-..+|++||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCc-hHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhc
Q 038200 93 LFGSCAKTGCV-ERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPR-----DLISWNSIVSGHVRS 166 (523)
Q Consensus 93 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~ 166 (523)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ ...+...+.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999986 789999999999999999999999998887765555555554444421 234555566666654
Q ss_pred C
Q 038200 167 G 167 (523)
Q Consensus 167 ~ 167 (523)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-16 Score=133.96 Aligned_cols=197 Identities=13% Similarity=0.012 Sum_probs=152.0
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
+++...+..+...+...|++++|+..|++..+ .+...+..+...+...|++++|+..|++..+.. +.+...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART------PRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHH
Confidence 34566677777777888888888888877644 356778888888888899999999998888843 224567
Q ss_pred HHHHHHHHhhc-----------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc
Q 038200 328 FIGVICACVRA-----------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 328 ~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 396 (523)
+..+..++... |++++|...|++..+. .+-+...+..+..+|...|++++|++.|+++.+.. .
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~ 149 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----D 149 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----C
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----c
Confidence 78888888888 9999999999999984 33457888999999999999999999999998642 5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+...+..+..++...|++++|...++++++.+|+++.++..++.++...|++++|+..+++..
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 677888899999999999999999999999999999999999999999999999999998764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-15 Score=137.25 Aligned_cols=246 Identities=10% Similarity=-0.019 Sum_probs=191.6
Q ss_pred hcCCchHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHH
Q 038200 196 KSGNPGCSLKLFREMMKSGF---RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEV 272 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 272 (523)
..|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45778889999988887532 1245677888888889999999999999888875 3367888888999999999999
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 273 AQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 273 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
|...|+++.+ .+...+..+...|...|++++|...|+++... .|+.......+..+...|++++|...++
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-------DPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999988754 46788999999999999999999999999984 4665555556666677899999999998
Q ss_pred HhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 350 QMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+.... .+++...+ .++..+...++.++|.+.++++........| +...+..+...+...|++++|...++++.+.+
T Consensus 169 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 169 QHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 88874 34444444 4777888888999999999998853111111 15778888889999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHH
Q 038200 429 PQDFSRYQFLLNVYAVAGQWEDVARVR 455 (523)
Q Consensus 429 p~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (523)
|++... ...++...|++++|++.+
T Consensus 246 p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTTCHH---HHHHHHHHHHHHHC----
T ss_pred chhHHH---HHHHHHHHHHHHhhHHHH
Confidence 976543 366788889999988776
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-17 Score=164.03 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=119.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHhcCC-------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 153 LISWNSIVSGHVRSGDMSAAHELFDIMP-------ERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 153 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
..+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997653 489999999999999999999999999999999999999999999
Q ss_pred HHHHhccccH-HHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---C------ChHHHHHHHHHH
Q 038200 226 LTACGRSARF-NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---R------NLVCWNAMILGH 295 (523)
Q Consensus 226 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~li~~~ 295 (523)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+. .+++..+++.. | ...+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999999877764 44444555422 1 123444455556
Q ss_pred HhcC
Q 038200 296 CIHG 299 (523)
Q Consensus 296 ~~~g 299 (523)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=133.77 Aligned_cols=251 Identities=10% Similarity=-0.014 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHHHHhhh
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDTALIDL 263 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 263 (523)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+....++ ...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455566667777777777777776643 22344666666677777777777777777766321121 2336667777
Q ss_pred hhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 264 YSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
|...|++++|+..|++..+ .+..+|..+...|...|++++|...|++..... +.+...+..+...+...++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT------TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS------CCCHHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC------CCcHHHHHHHHHHHHHHHH
Confidence 7777777777777776543 345677777777777777777777777776642 2234555555524444458
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCch------HHHHHHHHHHHHhc
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSFE------SIMWVSLLSLCRFQ 411 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 411 (523)
+++|...|+++.+. .+.+...+..+..++...|+ +++|...++++.+... ..|+ ...+..+...+...
T Consensus 158 ~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 158 YVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHHHHc
Confidence 88888888877763 33345666667777776666 6667766666553210 0122 24667777788889
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
|++++|...++++.+++|+++.+...+.......+
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999999999999888887776665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=140.21 Aligned_cols=377 Identities=10% Similarity=-0.004 Sum_probs=199.4
Q ss_pred HHHHhhccCCchhHHHHhccCCC-CCcccHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-
Q 038200 27 LLKHSADFGSPDYTVLVFKCINN-PGTFCVNAVIKAYSNSCVP---DQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTG- 101 (523)
Q Consensus 27 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 101 (523)
+...+.+.|++++|+++|+...+ .+..++..|...+...|++ ++|+..|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 34445556666666666655432 3444455555555555555 5666666665532 3344444444333333
Q ss_pred ----CchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 102 ----CVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 102 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
++++|...++...+.|. ...+..|..+|...+..+.+. .+.+.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~----------------------------~a~~~~~ 133 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNV----------------------------NAQQQIS 133 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTC----------------------------CHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCH----------------------------HHHHHHH
Confidence 45566666666665442 224444555554433222111 1222222
Q ss_pred cCCC-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCCCc
Q 038200 178 IMPE-RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA---RFNEGRSVHGYTVRTSLKPN 253 (523)
Q Consensus 178 ~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~ 253 (523)
.... .+...+..+...|...+.++++......+.+.-...+...+..+...|...| +.++|...|++..+.|. ++
T Consensus 134 ~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~ 212 (452)
T 3e4b_A 134 QWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VT 212 (452)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SC
T ss_pred HHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HH
Confidence 2211 2445556666666666655444443322222111222225666666666677 77777777777777663 34
Q ss_pred hHHHHHHhhhhhhc----CChHHHHHHHHhcCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCCcCCCHH
Q 038200 254 IILDTALIDLYSKC----QKVEVAQRVFDSMADRNLVCWNAMILG-H--CIHGKPEEGIKLFTALVNGTVAGGSISPDEI 326 (523)
Q Consensus 254 ~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~ 326 (523)
...+..|...|... +++++|...|++....+...+..+... | ...+++++|+.+|++..+.| +..
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------~~~ 284 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------QPR 284 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------CHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------CHH
Confidence 44444555555544 677788888877763355666666666 3 45788888888888887754 455
Q ss_pred HHHHHHHHHhhcC-----cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCch
Q 038200 327 TFIGVICACVRAE-----LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 327 ~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.+..|...|. .| ++++|..+|++.. . -++..+..|...|.. ..++++|.++|++..+.+ .++
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~ 355 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNS 355 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTT
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHH
Confidence 5666666665 34 8888888888876 2 356677777777766 348888888888887532 233
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHh
Q 038200 398 SIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY--AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 398 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 460 (523)
....+...|.. ..+.++|..+++++.+.++.+ ....+..+. ...++..+|..+.++-++
T Consensus 356 --A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 --ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp --HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33344444442 457888888888888766533 333333332 223455667777666544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=4.4e-14 Score=133.21 Aligned_cols=249 Identities=7% Similarity=0.012 Sum_probs=205.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchHHHHHHh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSAR-FNEGRSVHGYTVRTSLKPNIILDTALI 261 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 261 (523)
+...|+.+...+...|++++|+..|++.++.. +-+...|..+..++...|+ +++|...++++++... -+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 34678888889999999999999999999863 3356788889999999996 9999999999999763 3788899999
Q ss_pred hhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh-
Q 038200 262 DLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR- 337 (523)
Q Consensus 262 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~- 337 (523)
.++...|++++|+..|+++.+ .+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Confidence 999999999999999998854 477899999999999999999999999999954 2357788888888888
Q ss_pred cCcHHHH-----HHHHHHhhHhcCCCCChHHHHHHHHHHHcCC--ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 338 AELLTEG-----RKYFRQMIDFYKIKPNFAHYWCMANLYAGAE--LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 338 ~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
.|..++| +..++++.+. -+-+...|..+..++...| ++++|++.++++ +. .+.+...+..+...+..
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYED 321 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHH
Confidence 5665777 5888888873 3345788888999999988 689999999988 32 24456777788888877
Q ss_pred cC--------C-HHHHHHHHHHH-hhcCCCChhhHHHHHHHHHhc
Q 038200 411 QG--------A-VAMVERLAKSF-VDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 411 ~g--------~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.| + .++|..+++++ .+++|.....|..++..+...
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 64 2 58999999999 899999888898888776643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-14 Score=136.41 Aligned_cols=332 Identities=11% Similarity=0.020 Sum_probs=176.6
Q ss_pred chHhHHHHHHHHhCCCCCChhHHHHHHHHhhccCCc---hhHHHHhccCCCCCcccHHHHHHHHHhCC-----CchHHHH
Q 038200 2 KQLLQIQAHLITSGLFFNNSFWTINLLKHSADFGSP---DYTVLVFKCINNPGTFCVNAVIKAYSNSC-----VPDQGVV 73 (523)
Q Consensus 2 ~~~~~i~~~~~~~g~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~ 73 (523)
+.|..++....+.| ++..+..|..+|...|+. ++|++.|++..+.+...+..|...+...+ ++++|+.
T Consensus 20 ~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~ 95 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES 95 (452)
T ss_dssp HHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence 35666777777664 445566677777778888 99999999887667788888888666665 7789999
Q ss_pred HHHHHHHCCCCCCcccHHHHHHHHHccCCch---HHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC
Q 038200 74 FYLQMIKNGFMPNSYTFVSLFGSCAKTGCVE---RGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSP 150 (523)
Q Consensus 74 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 150 (523)
.|++..+.| +...+..|...+...+..+ .+.+.+......| +......|...|...+.++.+
T Consensus 96 ~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~--------- 160 (452)
T 3e4b_A 96 LLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH--------- 160 (452)
T ss_dssp HHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG---------
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC---------
Confidence 999999876 2336777777777665543 3445555554444 455666677777766643332
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSG---NPGCSLKLFREMMKSGFRGNDKTMASVLT 227 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 227 (523)
.+.+..++......+...+..|...|...| ++++|+..|++..+.| .++...+..+..
T Consensus 161 ------------------~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 161 ------------------LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp ------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 223333444444444445555666666666 6666666666666654 334444444444
Q ss_pred HHhcc----ccHHHHHHHHHHHHHcCCCCchHHHHHHhhh-h--hhcCChHHHHHHHHhcCC-CChHHHHHHHHHHHhcC
Q 038200 228 ACGRS----ARFNEGRSVHGYTVRTSLKPNIILDTALIDL-Y--SKCQKVEVAQRVFDSMAD-RNLVCWNAMILGHCIHG 299 (523)
Q Consensus 228 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g 299 (523)
.|... +++++|...|++.. .| +...+..|... | ...+++++|...|++..+ .+...+..+...|. .|
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 55433 46666666666655 22 33444444444 2 345666666666666543 24455555555555 33
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 -----KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 -----~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
++++|..+|++.. .| +......|...|.. ..++++|..+|++..+. | ++.....|..+
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~g--------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~ 363 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-GR--------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-G---QNSADFAIAQL 363 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-TT--------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-T---CTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-CC--------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-C---hHHHHHHHHHH
Confidence 6666666666655 32 33444444444444 23677777777776653 3 23344455555
Q ss_pred HHc----CCChHHHHHHHHhCCC
Q 038200 371 YAG----AELTEEAEEILRKMPE 389 (523)
Q Consensus 371 ~~~----~g~~~~A~~~~~~~~~ 389 (523)
|.. ..+.++|..+|+...+
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Confidence 543 3466777777777664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=122.94 Aligned_cols=139 Identities=10% Similarity=0.039 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
..+..+...|...|++++|..+++++...+ ..| +...+..+...+...|++++|...++++.+. .+.+...+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 178 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDT-----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVA 178 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCT-----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHH
Confidence 344445555555555555555555555421 223 3445555555666666666666666666553 22345555
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
..+...|...|++++|.+.++++.+. .+.+...+..+...+...|+.++|.++++++.+..|+++..
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQG---GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666666666666666666665532 22334445555555666666666666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=129.26 Aligned_cols=144 Identities=8% Similarity=0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+. .+.+...+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 162 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEAR 162 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHH
Confidence 3444444455555555555555555555432 223444445555555555555555555555542 22234445
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.+.+|+++.++..+.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 163 FQFGMCLANEGMLDEALSQFAAVTEQ---DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555555555554432 1223444445555555555555555555555555555554444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-13 Score=123.94 Aligned_cols=199 Identities=9% Similarity=-0.038 Sum_probs=170.4
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|.+.|+++.... +.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHH
Confidence 46677777788888888888888887643 466788889999999999999999999998854 336778888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
+...+...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHH
Confidence 999999999999999999999872 3445 4678888999999999999999999998853 2335778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..|++++|...++++.+..|+++..+..++.+|...|++++|.++++++.+..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999997754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-14 Score=126.87 Aligned_cols=199 Identities=11% Similarity=0.066 Sum_probs=156.5
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD------SSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CcchHHHH
Confidence 445666677777788888888888877643 356788888999999999999999999998854 34677888
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHH
Confidence 8999999999999999999999884 4456788999999999999999999999998853 2345778888888999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..|++++|...++++.+..|+++.++..++.+|...|++++|...++++.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999997753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-12 Score=126.06 Aligned_cols=413 Identities=8% Similarity=0.022 Sum_probs=288.2
Q ss_pred CCChhHHHHHHHHhhccCCchhHHHHhccCC---CCCcccHHHHHHHHHhCCC---chHHHHHHHHHHHCC-CCCCcccH
Q 038200 18 FNNSFWTINLLKHSADFGSPDYTVLVFKCIN---NPGTFCVNAVIKAYSNSCV---PDQGVVFYLQMIKNG-FMPNSYTF 90 (523)
Q Consensus 18 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~~~~ 90 (523)
|.|...|..++..+.+.+.++.+..+|+.+. +.....|...+..-.+.++ ++.+..+|++.+... .+|+...|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5799999999999999999999999999875 3456678888888888888 999999999998763 24888888
Q ss_pred HHHHHHHHccCCc--------hHHHHHHHHHHH-hCC-CCC-chHHHHHHHHHHc---------cCChHHHHHHHhhcCC
Q 038200 91 VSLFGSCAKTGCV--------ERGGMCHGLALK-NGV-DFE-LPVMNSLINMYGC---------FGAMDCARNMFVQMSP 150 (523)
Q Consensus 91 ~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~ 150 (523)
...+....+.++. +.+.++|+..+. .|. .++ ..+|...+..... .++++.+.++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8887766665554 334577887765 365 454 4688888876543 3457889999998874
Q ss_pred -CCc---chHH---HHHHHH----------HhcCCHHHHHHHHhc-------CCC--------------C--C------h
Q 038200 151 -RDL---ISWN---SIVSGH----------VRSGDMSAAHELFDI-------MPE--------------R--N------V 184 (523)
Q Consensus 151 -~~~---~~~~---~ll~~~----------~~~~~~~~a~~~~~~-------~~~--------------~--~------~ 184 (523)
|.. .+|. .+...+ -...+++.|...+.+ +.. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 211 2222 221111 011233444444433 111 1 0 1
Q ss_pred hHHHHHHHHHHhcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHH-HHHHHHHHcCCCCchHH
Q 038200 185 VSWNIMISGYSKSG-------NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGR-SVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 185 ~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~ 256 (523)
..|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 34555554333322 123456678888775 3557777888888888889999996 999999875 4557777
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD-------------RN------------LVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
+-..+....+.|+++.|.++|+++.. |+ ...|...+....+.|+.+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999998753 21 236788888888889999999999999
Q ss_pred HhC-CCCCCCcCCCHHHHHHHHHHHhh-cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCC
Q 038200 312 VNG-TVAGGSISPDEITFIGVICACVR-AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPE 389 (523)
Q Consensus 312 ~~~-~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 389 (523)
++. + .+....|...+..-.+ .++.+.|..+|+...+. .+-+...+...++.....|+.+.|..+|++...
T Consensus 461 ~~~~~------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 461 RRLKK------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHTGG------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHhcC------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 885 3 1223334333322223 35689999999999985 444666777888888889999999999999886
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 390 DNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
......-....|...+..-...|+.+.+..+.+++.+..|+++ ....++.-
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~r 583 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNK 583 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHH
Confidence 4211112457888888888899999999999999999999764 33333333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.1e-13 Score=119.62 Aligned_cols=224 Identities=6% Similarity=-0.095 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHH
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKPNIILDT 258 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 258 (523)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555555566666666666666655552 233444445555555 555555555555555443
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICA 334 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~ 334 (523)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~ 119 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--------YAEGCASLGGI 119 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--------CccHHHHHHHH
Confidence 33344444444444 555555555555555532 34455555555
Q ss_pred Hhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 335 CVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 335 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++..+. .+...+..+..
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~ 190 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGN 190 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHH
Confidence 555 56666666666666553 2 34455555555555 56666666666665532 12344455555
Q ss_pred HHHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 038200 407 LCRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRR 462 (523)
Q Consensus 407 ~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 462 (523)
.+.. .+++++|...++++.+.+| +.++..++.+|.. .+++++|...+++..+.+
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5655 6666666666666666554 4566666666666 666666666666665544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.21 Aligned_cols=274 Identities=8% Similarity=-0.034 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccccHHHHHHHHHHHHHc----CC-CCchHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGND----KTMASVLTACGRSARFNEGRSVHGYTVRT----SL-KPNIIL 256 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 256 (523)
.+..+...+...|++++|..+|++..+.+ +.+. ..+..+..++...|++++|...++++.+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667777888888888888877753 1122 35667777777888888888887776653 11 123466
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMADR---------NLVCWNAMILGHCIHGK-----------------PEEGIKLFTA 310 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 310 (523)
+..+...|...|++++|...|++..+- ...++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 777778888888888888887776431 23467778888888888 8888888887
Q ss_pred HHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHH
Q 038200 311 LVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 311 m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
......... ..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 209 al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 209 NLKLMRDLG-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 655210000 111 2347778888899999999999999988764211112 2378889999999999999999998
Q ss_pred hCCCCCCCCC---chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHH
Q 038200 386 KMPEDNDNMS---FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVARVRE 456 (523)
Q Consensus 386 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (523)
+......... ....++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764211011 12567778888899999999999999999886432 24588899999999999999999999
Q ss_pred HHHhC
Q 038200 457 LMKKR 461 (523)
Q Consensus 457 ~m~~~ 461 (523)
+..+.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=136.47 Aligned_cols=275 Identities=12% Similarity=0.008 Sum_probs=176.1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCC-ch
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN----DKTMASVLTACGRSARFNEGRSVHGYTVRT----SLKP-NI 254 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 254 (523)
...+......+...|++++|...|++..+.+ +.+ ...+..+..++...|++++|...++++... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556666777777777777777776642 112 245666666777777777777777665443 1111 24
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGK--------------------PEEGI 305 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~ 305 (523)
.++..+...|...|++++|...+++..+ .+ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566667777777777777777766543 11 3366677777777777 77777
Q ss_pred HHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHH
Q 038200 306 KLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 380 (523)
..+.+......... ..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 168 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 77776654210000 111 1346677777788888888888888877653211122 23677778888888888888
Q ss_pred HHHHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHH
Q 038200 381 EEILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDV 451 (523)
Q Consensus 381 ~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A 451 (523)
.+.+++...... +..+ ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888877653210 0111 1456667777788888888888888888775332 155777888888888888888
Q ss_pred HHHHHHHHh
Q 038200 452 ARVRELMKK 460 (523)
Q Consensus 452 ~~~~~~m~~ 460 (523)
...+++..+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=120.10 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=93.1
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~ 84 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCChHHHHHHHH
Confidence 33333344444444444444433321 123344444445555555555555555554432 123444445555
Q ss_pred HHhhc-CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 334 ACVRA-ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 334 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
.+... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHc
Confidence 55555 5555555555555441 22222 344445555555555555555555554432 112244444555555555
Q ss_pred CCHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDP-QDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555555555555 5555555555555555555555555555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-14 Score=125.77 Aligned_cols=229 Identities=8% Similarity=0.007 Sum_probs=150.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC----hHHHHHHHHH
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN----LVCWNAMILG 294 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~li~~ 294 (523)
.+......+...|++++|...++++.+... .+...+..+..+|...|++++|+..+++..+ ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445566677788888888888888877642 2455666777777777788877777777644 12 2246777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHH
Confidence 777777777777777777743 234566777777777777777777777777662 333456666666233334
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcC---CCC-----hhhHHHHHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMD---PQD-----FSRYQFLLNVYA 443 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~ 443 (523)
+++++|.+.++++.+. .+.+...+..+...+...|+ +++|...++++.+.. |+. ..+|..++.+|.
T Consensus 156 ~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 4777777777777643 12234555556666666666 666777777777643 321 146667777777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...+++..+.
T Consensus 233 ~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 233 INRDKVKADAAWKNILAL 250 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 777777777777777654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-13 Score=119.17 Aligned_cols=208 Identities=10% Similarity=0.062 Sum_probs=141.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHC 296 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 296 (523)
..+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|+++.+ .+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344444455555555555555555555442 22344555555555555555555555555422 34556677777788
Q ss_pred hc-CChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 297 IH-GKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 297 ~~-g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
.. |++++|...++++...+ ..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADP-----TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTST-----TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHc
Confidence 88 88888888888887732 2343 567777888888888888888888888773 334577888888888889
Q ss_pred CChHHHHHHHHhCCCCCCCCC-chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMS-FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
|++++|.+.++++.+. .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 161 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSR---VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp TCHHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999998887753 22 3455666666677888999999999999988889877655443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=120.12 Aligned_cols=206 Identities=12% Similarity=0.020 Sum_probs=90.5
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 183 NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 183 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455556666666666666666666666542 3345555566666666666666666666666553 224455555555
Q ss_pred hhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcH
Q 038200 263 LYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELL 341 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~ 341 (523)
++...+.. ... .+...|++++|+..|++..+. .|+ ...+..+..++...|++
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~-------~P~~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERV-------NPRYAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCh
Confidence 55554000 000 000114444444444444442 222 33444444444444444
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLA 421 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 421 (523)
++|+..|+++.+. . .++..+..+..+|...|++++|...++++.+. .+.+...+..+...+...|++++|...+
T Consensus 135 ~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~ 208 (217)
T 2pl2_A 135 DKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAA 208 (217)
T ss_dssp HHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 4444444444443 2 34444444444444444444444444444431 1112333444444444444444444444
Q ss_pred HH
Q 038200 422 KS 423 (523)
Q Consensus 422 ~~ 423 (523)
++
T Consensus 209 ~~ 210 (217)
T 2pl2_A 209 AL 210 (217)
T ss_dssp --
T ss_pred HH
Confidence 43
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-12 Score=118.72 Aligned_cols=230 Identities=10% Similarity=-0.015 Sum_probs=153.1
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 038200 151 RDLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASV 225 (523)
Q Consensus 151 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 225 (523)
.+..++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667888888999999999999999988764 56788889999999 999999999999999876 67788888
Q ss_pred HHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCCh
Q 038200 226 LTACGR----SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKP 301 (523)
Q Consensus 226 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 301 (523)
...+.. .+++++|...|++..+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888888 899999999998887754 445555555555540 0004444
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh----cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR----AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG---- 373 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 373 (523)
++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + ++..+..+...|..
T Consensus 131 ~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 131 KKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCC
Confidence 55555555444432 23334444444444 55666666666655552 1 34455555666666
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+++++|.+.+++..+. .| ...+..+...+.. .+++++|...++++.+.+|+
T Consensus 199 ~~~~~~A~~~~~~a~~~----~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 199 TKNFKEALARYSKACEL----EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCCHHHHHHHHHHHHHT----TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CccHHHHHHHHHHHHhC----CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666665532 11 3344555555555 66677777777777666664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=124.24 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHhhhhh-------hcCCh-------HHHHHHHHhcCC---C-ChHHHHHHHHHHHh
Q 038200 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYS-------KCQKV-------EVAQRVFDSMAD---R-NLVCWNAMILGHCI 297 (523)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~ 297 (523)
++|..+|+++++.. +.+..+|..++..+. ..|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666643 335556665555554 34665 778887777643 2 44578888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCC-HH-HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH-cC
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPD-EI-TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA-GA 374 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 374 (523)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..
T Consensus 112 ~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCS 182 (308)
T ss_dssp TTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHhc-------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHc
Confidence 88888888888888873 454 33 6777888888888888888888888763 2344555544433322 36
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCC-ChhhHHHHHHHHHhcCChhH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM---DPQ-DFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~ 450 (523)
|++++|.++|+++.+. .+.+...|..++..+...|+.++|..+|+++++. .|+ ....|..++..+.+.|+.++
T Consensus 183 ~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 183 KDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888753 2335677788888888888999999999988885 443 56688888888888899999
Q ss_pred HHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCCCCchHHHHHHHHHHhcccCCcccccccccc
Q 038200 451 VARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGHFWRGGMKEEVNKMMECRQSRSLATVSKQLP 515 (523)
Q Consensus 451 A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 515 (523)
|..+++++.+......... ....+...-+++...|+++.++++.||+
T Consensus 260 a~~~~~~a~~~~p~~~~~~------------------~~~~~~~r~~~l~~~P~~~~~ln~lgY~ 306 (308)
T 2ond_A 260 ILKVEKRRFTAFREEYEGK------------------ETALLVDRYKFMDLYPCSASELKALGYK 306 (308)
T ss_dssp HHHHHHHHHHHTTTTTSSC------------------HHHHHHTTTCBTTBCSSCHHHHHTTTCC
T ss_pred HHHHHHHHHHHcccccccc------------------hHHHHHHHHHhcccCCCCHHHHHhcCCC
Confidence 9988888877542211110 1133344447888999999999999997
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-14 Score=131.38 Aligned_cols=229 Identities=10% Similarity=0.079 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC-hHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 219 DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK-VEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 219 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
...|..+..++...|++++|...++++++.. +-+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567778888899999999999999999975 3368899999999999997 9999999999854 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc-
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG- 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 373 (523)
+...|++++|+..|++++... +-+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHccCHHHHHHHHHHHHHhC------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHh
Confidence 999999999999999999954 335778999999999999999999999999984 34468899999999999
Q ss_pred CCChHHH-----HHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 374 AELTEEA-----EEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQG--AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 374 ~g~~~~A-----~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.|..++| ++.+++.++. .| +...|..+...+...| ++++|...++++ +.+|+++.++..++.+|.+.
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence 6665777 5888888753 44 5678888888888888 689999999998 89999999999999999987
Q ss_pred C---------ChhHHHHHHHHH-HhC
Q 038200 446 G---------QWEDVARVRELM-KKR 461 (523)
Q Consensus 446 g---------~~~~A~~~~~~m-~~~ 461 (523)
| .+++|+++++++ .+.
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred hcccccchHHHHHHHHHHHHHHHHHh
Confidence 5 358999999998 453
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=133.11 Aligned_cols=274 Identities=12% Similarity=0.006 Sum_probs=198.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCC-chHH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGN----DKTMASVLTACGRSARFNEGRSVHGYTVRT----SLKP-NIIL 256 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 256 (523)
.+......+...|++++|..+|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +..+ ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667778888888888888887753 222 356677777888888888888888776543 2122 2456
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGK--------------------PEEGIKL 307 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 307 (523)
+..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77788888888888888888877643 12 2367778888888888 8888888
Q ss_pred HHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHH
Q 038200 308 FTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEE 382 (523)
Q Consensus 308 ~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 382 (523)
+++......... ..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+
T Consensus 166 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEENLSLVTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 887654210000 111 2346778888899999999999999988763111112 3478888999999999999999
Q ss_pred HHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHH
Q 038200 383 ILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 383 ~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.+++..+... +..+ ...++..+...+...|++++|...++++.+..+. ...++..++.+|...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9988763210 0111 1556777888899999999999999999875442 24578899999999999999999
Q ss_pred HHHHHHhC
Q 038200 454 VRELMKKR 461 (523)
Q Consensus 454 ~~~~m~~~ 461 (523)
.+++..+.
T Consensus 325 ~~~~a~~~ 332 (338)
T 3ro2_A 325 FAEKHLEI 332 (338)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-13 Score=114.07 Aligned_cols=168 Identities=8% Similarity=0.077 Sum_probs=144.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
++..|..+...|...|++++|+..|++.++.. +-+..++..+..++.+.|++++|...++..... .+.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHH
Confidence 56778889999999999999999999998843 234678888889999999999999999999874 4446777
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+..+...+...++++.|.+.+.+.... .+.+...+..+...+...|++++|...++++++.+|.++.++..++.+|.
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 888888999999999999999988753 23456778888888999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 038200 444 VAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~~ 462 (523)
+.|++++|+..|++..+..
T Consensus 153 ~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHhCC
Confidence 9999999999999987653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=138.10 Aligned_cols=261 Identities=12% Similarity=0.055 Sum_probs=166.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC----CC-chH
Q 038200 186 SWNIMISGYSKSGNPGCSLKLFREMMKS----GFRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL----KP-NII 255 (523)
Q Consensus 186 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~ 255 (523)
.|..+...+...|++++|...+++..+. +..| ...++..+..++...|++++|...++++.+... .+ ...
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3445555555555555555555544321 1111 123444555555555666666555555443210 00 123
Q ss_pred HHHHHhhhhhhcCC--------------------hHHHHHHHHhcCC-----C----ChHHHHHHHHHHHhcCChHHHHH
Q 038200 256 LDTALIDLYSKCQK--------------------VEVAQRVFDSMAD-----R----NLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 256 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
++..+...|...|+ +++|...+++..+ . ...++..+...|...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45555556666666 6666665554422 1 13467778888888999999999
Q ss_pred HHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChH
Q 038200 307 LFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTE 378 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 378 (523)
.+++...... -.++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+++
T Consensus 209 ~~~~al~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 209 AHEQRLLIAK----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 8888775320 0112 237788888899999999999999988753111111 567788899999999999
Q ss_pred HHHHHHHhCCCCCC--CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHHhcCChh
Q 038200 379 EAEEILRKMPEDND--NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 379 ~A~~~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+|.+.+++..+... +..+ ...++..+...+...|++++|...++++.++. +....++..++.+|...|+..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999988763210 0111 25577778888999999999999999998753 223567888999998888764
Q ss_pred H
Q 038200 450 D 450 (523)
Q Consensus 450 ~ 450 (523)
.
T Consensus 365 ~ 365 (406)
T 3sf4_A 365 S 365 (406)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-14 Score=137.52 Aligned_cols=209 Identities=6% Similarity=0.029 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCCh-HHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 235 FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKV-EVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
++++...++...... +.+...+..+..+|...|++ ++|++.|++..+ .+...|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544432 33567777778888888888 888888877643 3567889999999999999999999999
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhc---------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-------
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRA---------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA------- 374 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 374 (523)
..+ ..|+...+..+...+... |++++|...|+++.+. .+.+...|..+..+|...
T Consensus 163 al~-------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 163 ALT-------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHT-------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHh-------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccc
Confidence 998 458888889999999999 9999999999999984 344688899999999988
Q ss_pred -CChHHHHHHHHhCCCCCCCCCc----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 375 -ELTEEAEEILRKMPEDNDNMSF----ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 375 -g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
|++++|++.|++..+. .| +...+..+..++...|++++|...++++.+++|+++.++..++.++...|+++
T Consensus 234 ~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 234 PKISQQALSAYAQAEKV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHHHH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 44 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 038200 450 DVARVREL 457 (523)
Q Consensus 450 ~A~~~~~~ 457 (523)
+|+..+++
T Consensus 310 eAi~~~~~ 317 (474)
T 4abn_A 310 SLLESKGK 317 (474)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcc
Confidence 99976543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-14 Score=128.55 Aligned_cols=243 Identities=12% Similarity=-0.024 Sum_probs=152.5
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHH
Q 038200 64 NSCVPDQGVVFYLQMIKNGFM---PNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDC 140 (523)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 140 (523)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+++..+. +..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 346667777777777664211 12345666666667777777777777777666433 55666666666666666666
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH
Q 038200 141 ARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK 220 (523)
Q Consensus 141 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 220 (523)
|.+.|++.... ...+..+|..+..+|...|++++|...|+++.+. .|+..
T Consensus 96 A~~~~~~al~~----------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~ 145 (275)
T 1xnf_A 96 AYEAFDSVLEL----------------------------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP 145 (275)
T ss_dssp HHHHHHHHHHH----------------------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHhc----------------------------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence 66555554210 0124566777777777777788888777777764 34444
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCC-------hHHHHHHHH
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRN-------LVCWNAMIL 293 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~ 293 (523)
.....+..+...|++++|...+....... +++...+. ++..+...++.++|...+++..+.+ ...+..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 44444455566678888888887776653 23333333 5666667777788888888776532 356777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
.|...|++++|...|++.... .|+. +.....++...|++++|++.+
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~-------~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVAN-------NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-------CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhC-------Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 888888888888888888874 3532 122244566677777777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=126.23 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=144.7
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLALKNGVDFEL----PVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVR 165 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 165 (523)
+..+...+...|++++|...++.+++.++. +. .++..+..+|...|++++|...+++.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------------- 112 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD----------------- 112 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 334455566677777777777777776432 22 35666666677777777776666553
Q ss_pred cCCHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcccc----
Q 038200 166 SGDMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSG-----FRGNDKTMASVLTACGRSAR---- 234 (523)
Q Consensus 166 ~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~---- 234 (523)
+++.+.... ....++..+...|...|++++|...+++..+.. ......++..+...+...|+
T Consensus 113 -------l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 113 -------LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp -------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 222222211 123556777777888888888888877765531 11123466667777777777
Q ss_pred -------------HHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHH
Q 038200 235 -------------FNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC 296 (523)
Q Consensus 235 -------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 296 (523)
+++|...+++..+. +..+ ...++..+...|...|++++|+..|++
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----------------- 248 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE----------------- 248 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence 66666666554432 1111 123444444445555555555554444
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC----CChHHHHHHHHHHH
Q 038200 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIK----PNFAHYWCMANLYA 372 (523)
Q Consensus 297 ~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 372 (523)
................++..+...+...|++++|...+++..+...-. ....++..+...|.
T Consensus 249 --------------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 249 --------------RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp --------------HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333110000000001244445555555555555555554444321000 01344455555555
Q ss_pred cCCChHHHHHHHHhCCCCCCC---CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 373 GAELTEEAEEILRKMPEDNDN---MSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
..|++++|.+.+++..+.... ......++..+...+...|++++|...++++.++.+
T Consensus 315 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 555555555555554321000 011133455555566666666666666666666544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-10 Score=117.49 Aligned_cols=408 Identities=10% Similarity=-0.018 Sum_probs=282.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC---chHHHHHHHHHHHhCC-CCCchH
Q 038200 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC---VERGGMCHGLALKNGV-DFELPV 124 (523)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~ 124 (523)
+.|..+|..++..+.+.+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+|++.+...+ +|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 458889999999999999999999999999986 46666788888888888888 9999999999988642 478889
Q ss_pred HHHHHHHHHccCCh--------HHHHHHHhhcC------CC-CcchHHHHHHHHH---------hcCCHHHHHHHHhcCC
Q 038200 125 MNSLINMYGCFGAM--------DCARNMFVQMS------PR-DLISWNSIVSGHV---------RSGDMSAAHELFDIMP 180 (523)
Q Consensus 125 ~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 180 (523)
|...+....+.++. +.+.++|+... .+ +...|...+.... ..++++.+..+|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888876665543 33456776632 22 3457777776543 2345788999999887
Q ss_pred C-CC---hhHHHHH---HHHH----------HhcCCchHHHHHHHHHHHC--CC----C-----------C-----C---
Q 038200 181 E-RN---VVSWNIM---ISGY----------SKSGNPGCSLKLFREMMKS--GF----R-----------G-----N--- 218 (523)
Q Consensus 181 ~-~~---~~~~~~l---i~~~----------~~~~~~~~a~~~~~~m~~~--~~----~-----------p-----~--- 218 (523)
. |. ..+|... .... -...+++.|...+.++... ++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5 32 1233222 1111 0011233444455443221 11 0 1 0
Q ss_pred HHHHHHHHHHHhccc-------cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH-HHHHhcCC---CChHH
Q 038200 219 DKTMASVLTACGRSA-------RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ-RVFDSMAD---RNLVC 287 (523)
Q Consensus 219 ~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~---~~~~~ 287 (523)
...|...+.---..+ ..+.+..+|++++.. ++....+|-..+..+...|+.++|. .+|++... .+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222221 133456778888876 3457788888888888889999996 99988754 35567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----CcCCC------------HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGG----SISPD------------EITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
|...+......|+++.|.++|++++....... .-.|+ ...|...+....+.|..+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888999999999999999986310000 00132 235777777778889999999999999
Q ss_pred hHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 352 IDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.+. ...+....|...+..-.+.+ +.+.|.++|+..++. ++.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~---~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY---FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 873 12223455554444444554 589999999999864 4445667778888888899999999999999997773
Q ss_pred ---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 431 ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 431 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
....|...+..-.+.|+.+.+.++.+++.+..
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678888888889999999999999998874
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-11 Score=112.96 Aligned_cols=223 Identities=9% Similarity=0.071 Sum_probs=171.7
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccccH-------HHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 201 GCSLKLFREMMKSGFRGNDKTMASVLTACG-------RSARF-------NEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
++|..+|++.+... +.+...|..++..+. ..|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887752 445666666666654 34765 8899999998884123356788889999999
Q ss_pred cCChHHHHHHHHhcCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh-hcCcH
Q 038200 267 CQKVEVAQRVFDSMAD--R-NLV-CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-RAELL 341 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~ 341 (523)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST------TCCTHHHHHHHHHHHHTSCCH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999998755 3 343 79999999999999999999999999854 233444544333322 36999
Q ss_pred HHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHH
Q 038200 342 TEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..... .+.| ....|..++......|+.+.|..
T Consensus 186 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999884 34467889999999999999999999999998521 1344 36688888888889999999999
Q ss_pred HHHHHhhcCCCChh
Q 038200 420 LAKSFVDMDPQDFS 433 (523)
Q Consensus 420 ~~~~~~~~~p~~~~ 433 (523)
+++++.+..|+++.
T Consensus 263 ~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 263 VEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHTTTTTS
T ss_pred HHHHHHHHcccccc
Confidence 99999999997553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-13 Score=126.93 Aligned_cols=236 Identities=9% Similarity=-0.040 Sum_probs=166.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC-----hHHHH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN-----LVCWN 289 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~ 289 (523)
....+...|++++|...+++..+. +.++ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566778888888888777664 1111 245677777788888888887777776532 11 34678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CC-CCChHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KI-KPNFAHYW 365 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 365 (523)
.+...|...|++++|...|++..+.....+.......++..+...|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999988876320000000112478888899999999999999999887621 22 33467788
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCC-Cch-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNM-SFE-SIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
.+...|.+.|++++|.+.+++..+..... .|. ...+..+...+...|+ .++|..++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 89999999999999999998876421000 122 2334566667888888 77777777766 233335568889999
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 038200 441 VYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+|...|++++|...+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-12 Score=119.33 Aligned_cols=197 Identities=8% Similarity=-0.030 Sum_probs=105.9
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHhCCCCC----chHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 038200 92 SLFGSCAKTGCVERGGMCHGLALKNGVDFE----LPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSG 167 (523)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 167 (523)
.....+...|++++|...++.+.+..+. + ..++..+..++...|++++|.+.+++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------ 70 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL------------------ 70 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 3344555666777777777776665322 2 2455566666666666666666655531
Q ss_pred CHHHHHHHHhcCCC--CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcccc------
Q 038200 168 DMSAAHELFDIMPE--RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGN----DKTMASVLTACGRSAR------ 234 (523)
Q Consensus 168 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~------ 234 (523)
.+...... ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 71 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 71 ------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp ------HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred ------HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 11111111 1134566667777777777777777776654210 011 2356666677777777
Q ss_pred --------------HHHHHHHHHHHHHc----CCCC-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hH
Q 038200 235 --------------FNEGRSVHGYTVRT----SLKP-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LV 286 (523)
Q Consensus 235 --------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~ 286 (523)
+++|...+++..+. +..+ ...++..+...+...|++++|...+++..+ ++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 67776666655432 1111 123455555566666666666666655432 11 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
++..+...+...|++++|...+++...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=109.38 Aligned_cols=169 Identities=11% Similarity=0.013 Sum_probs=119.7
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHH
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFI 329 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~ 329 (523)
+..+|..+...|...|++++|+..|++..+ .+..+|..+..+|...|++++|...+....... +.+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------TTSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------CCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------chhHHHHH
Confidence 445566666666666666666666666533 355667777777777777888877777777643 23455666
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCR 409 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 409 (523)
.+...+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|++..+. .+.+...+..+..++.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHH
Confidence 6667777788888888888887763 3445677777888888888888888888887753 2334667777778888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCh
Q 038200 410 FQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
..|++++|...++++++++|+++
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCH
Confidence 88888888888888888887543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=124.54 Aligned_cols=248 Identities=10% Similarity=0.098 Sum_probs=146.4
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CC
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKS-------GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SL 250 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 250 (523)
..++..+...+...|++++|..+++++.+. ..+.....+..+..++...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666677777777777777666552 11223344555555666666666666666555432 00
Q ss_pred CCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCC-CHHHH
Q 038200 251 KPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISP-DEITF 328 (523)
Q Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p-~~~~~ 328 (523)
.| ....++..+...|...|++++|...++++....... ++..| ....+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01 122345556666666677777777666665530000 00123 34567
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhc-----C-CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC-----CCCc-
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFY-----K-IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND-----NMSF- 396 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~- 396 (523)
..+...+...|++++|..+++++.+.. + .+....++..+..+|...|++++|.+.++++.+... ...+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 778888889999999999998887631 1 122356778888999999999999999988773100 0011
Q ss_pred ------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ------ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
....+......+...+.+.++...++......|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11222233334445566677777788888778888889999999999999999999999988653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-12 Score=121.43 Aligned_cols=233 Identities=6% Similarity=-0.038 Sum_probs=172.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC--C----CchHHHH
Q 038200 190 MISGYSKSGNPGCSLKLFREMMKS----GFRG-NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL--K----PNIILDT 258 (523)
Q Consensus 190 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~ 258 (523)
....+...|++++|...|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... . ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677788888888888887663 1111 235677788888888888888888887766411 1 1235677
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-CCCHHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI-SPDEITF 328 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~p~~~~~ 328 (523)
.+..+|...|++++|+..|++..+ ++ ..++..+...|...|++++|...+++........ +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES-NILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-ccchhHHHHH
Confidence 888888899999999888887643 11 2478889999999999999999999987720000 02 2345678
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCc-hHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFY---KIKPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSF-ESIMW 401 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~ 401 (523)
..+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++.. ..| ....+
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-----~~~~~~~~~ 342 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-----LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-----CHHHHHHHH
Confidence 889999999999999999999887631 111223345678888999999 899999999985 344 35567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
..+...|...|++++|...++++.++.
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888999999999999999998754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=122.71 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=151.2
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCC--------C---ChhHHHHHHHHHHhcCCchHHHHHHHHHHHC------C
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPE--------R---NVVSWNIMISGYSKSGNPGCSLKLFREMMKS------G 214 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 214 (523)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|..++++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788888999999999999999998764 1 2456888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHH
Q 038200 215 F-RGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVC 287 (523)
Q Consensus 215 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 287 (523)
- +....++..+...+...|++++|...++++.+. +..|. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 1 224567888889999999999999999887764 11111 1223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc------CCCC
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY------KIKP 359 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~ 359 (523)
+..+...+...|++++|+.+++++....... ++..|. ..++..+...+...|++++|..+++++.+.. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444445555555555555555554420000 001222 3355566666666677777777666665420 0111
Q ss_pred C-------hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 360 N-------FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 360 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
. ...+..+...+...+.+.+|...++..... .+....++..+...|...|++++|..++++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD---SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 122223333444556666677777776642 2335677888888999999999999999999987764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-12 Score=129.01 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=144.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChH
Q 038200 284 NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFA 362 (523)
Q Consensus 284 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (523)
+..+|+.+...|...|++++|++.|++.++. .|+ ..++..+..+|.+.|++++|+..|+++.+. -+-+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~ 78 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV-------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 78 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 3567888999999999999999999999984 465 678899999999999999999999999874 233578
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..+..+|...|++++|++.|++.++. .| +...+..+..++...|++++|...++++++++|+++.++..|+.+
T Consensus 79 a~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 79 AYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 8999999999999999999999998853 44 477888999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 038200 442 YAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~ 460 (523)
|...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999999888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.1e-12 Score=105.74 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
.+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 45556666777777777777777666542 334566677777777777777777777777763 3345667777
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|.++.++..++.+|...|
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 777777888888888888777643 23456677777778888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 038200 447 QWEDVARVRELMKKR 461 (523)
Q Consensus 447 ~~~~A~~~~~~m~~~ 461 (523)
++++|...+++..+.
T Consensus 159 ~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 159 RHEEALPHFKKANEL 173 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888887664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-10 Score=108.94 Aligned_cols=303 Identities=9% Similarity=-0.000 Sum_probs=205.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccccHHHHHHHHHHHHHcCC---CC--chHHHH
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK----TMASVLTACGRSARFNEGRSVHGYTVRTSL---KP--NIILDT 258 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~ 258 (523)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... .+ ...++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556677899999999988887754222222 455666777888999999988888765311 11 123456
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMAD-------R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
.+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++........+ ......+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-GGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC-cHHHHHH
Confidence 677888889999999888887632 1 124566788889999999999999999877431100 0112356
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH-----HHHHHHHcCCChHHHHHHHHhCCCCCCCCC-chHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW-----CMANLYAGAELTEEAEEILRKMPEDNDNMS-FESIMW 401 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 401 (523)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++......+.. .....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999999876411111111222 233457799999999999999985432211 123355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCCceeEEEeC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ------DFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMPGCRLVDLK 475 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 475 (523)
..+...+...|++++|...++.+.+..+. ...++..++.+|...|++++|...+++.....-. .+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~--~g------- 327 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR--TG------- 327 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HC-------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--cc-------
Confidence 67777899999999999999998874321 1247778899999999999999999988654211 11
Q ss_pred CeEEEEecCCCCchHHHHHHHHHHhcccC
Q 038200 476 EVVEKLKVGHFWRGGMKEEVNKMMECRQS 504 (523)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 504 (523)
....|...+ ..+...+++.+...|-
T Consensus 328 -~~~~~~~~g---~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 328 -FISHFVIEG---EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp -CCHHHHTTH---HHHHHHHHHHHHTTCS
T ss_pred -HHHHHHHcc---HHHHHHHHHHHhCCCC
Confidence 111222222 4566677777777664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=121.44 Aligned_cols=208 Identities=7% Similarity=-0.077 Sum_probs=142.0
Q ss_pred HHHHHHHHhcCCC---CChhHHHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 169 MSAAHELFDIMPE---RNVVSWNIMISGYSKSGNP-GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 169 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
++.+.+.+++... .+...|..+..++...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443322 3556667777777777777 77777777776643 23456677777777777777777777777
Q ss_pred HHHcCCCCchHHHHHHhhhhhhc---------CChHHHHHHHHhcCC---CChHHHHHHHHHHHhc--------CChHHH
Q 038200 245 TVRTSLKPNIILDTALIDLYSKC---------QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIH--------GKPEEG 304 (523)
Q Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~--------g~~~~a 304 (523)
+.+.. |+...+..+..+|... |++++|+..|++..+ .+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77653 4456666777777777 777777777776543 3456677777777776 778888
Q ss_pred HHHHHHHHhCCCCCCCcCC----CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHH
Q 038200 305 IKLFTALVNGTVAGGSISP----DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEA 380 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 380 (523)
+..|++..+. .| +...+..+..+|...|++++|...|+++.+. .+.+...+..+..++...|++++|
T Consensus 241 ~~~~~~al~~-------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 241 LSAYAQAEKV-------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHH-------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888773 34 5667777777888888888888888887763 233456677777777777787777
Q ss_pred HHHHHhCC
Q 038200 381 EEILRKMP 388 (523)
Q Consensus 381 ~~~~~~~~ 388 (523)
++.+.++.
T Consensus 312 i~~~~~~~ 319 (474)
T 4abn_A 312 LESKGKTK 319 (474)
T ss_dssp HHHTTTCC
T ss_pred HHHhcccc
Confidence 77665554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-11 Score=103.61 Aligned_cols=206 Identities=11% Similarity=0.042 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHH
Q 038200 217 GNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMIL 293 (523)
Q Consensus 217 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~ 293 (523)
.|...+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999876546677777788889999999999999888744 34567888888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H-------HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---hH
Q 038200 294 GHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E-------ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN---FA 362 (523)
Q Consensus 294 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 362 (523)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+++.+. .|+ ..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 154 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTD 154 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHH
Confidence 899999999999999988884 354 3 34677777788888999999999888762 443 56
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.+..+..+|...|+ .+++++... ...+...+.... ....+.+++|...++++.+++|+++.+...+..+.
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~---~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPL---ASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGG---TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhc---ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 77777777765443 333333321 112222333222 33456689999999999999999887777766553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=109.18 Aligned_cols=227 Identities=8% Similarity=-0.030 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-----CC-chHHH
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGF-RG----NDKTMASVLTACGRSARFNEGRSVHGYTVRTSL-----KP-NIILD 257 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~ 257 (523)
.....+...|++++|...|++..+... .+ ...++..+..++...|+++.|...+.+..+... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556778888888888888765411 12 234667777778888888888888877765311 11 24566
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCcCC
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVN-----GTVAGGSISP 323 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~p 323 (523)
+.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...|++... .. +.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------~~ 259 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP------DL 259 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG------GG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC------hh
Confidence 6777788888888888877776543 11 24667777788888888888888887766 32 22
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC---CCChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCch
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKI---KPNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~ 397 (523)
...++..+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+..+++.. ..|+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~~ 334 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHAY 334 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----ChhH
Confidence 3556777777778888888888888777664211 1113344555556666666 677777777644 2222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 398 -SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 398 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
...+..+...|...|++++|...++++.+
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555566666666666666666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-11 Score=117.99 Aligned_cols=237 Identities=7% Similarity=-0.068 Sum_probs=174.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCC--C--C-chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC-----hHH
Q 038200 223 ASVLTACGRSARFNEGRSVHGYTVRTSL--K--P-NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN-----LVC 287 (523)
Q Consensus 223 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~ 287 (523)
......+...|++++|...++++.+... + + ...++..+...|...|+++.|...+++..+ ++ ..+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567889999999999999886521 1 1 246788899999999999999988887642 12 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCCChHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KIKPNFAHY 364 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 364 (523)
++.+...|...|++++|.+.|++..+.....+.......++..+...|...|++++|...+++..+.. +.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 88899999999999999999998876320000001123477888899999999999999999987721 222336778
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDND--NMSFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
..+...|.+.|++++|.+.+++..+... +.+.....+..+...+...|+ ..+|..++++.. ..|.....+..++
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la 343 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHH
Confidence 8899999999999999999998764321 122223455555566777888 777777777632 2233456788999
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 038200 440 NVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..|...|++++|...|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-11 Score=100.24 Aligned_cols=169 Identities=9% Similarity=-0.037 Sum_probs=142.5
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIG 330 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ 330 (523)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.... +.+...+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~ 81 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA------PDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHH
Confidence 45666778888889999999999998865 356788889999999999999999999998853 345778888
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+..
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHH
Confidence 889999999999999999999884 4556788889999999999999999999998754 23456788888889999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
.|++++|...++++.+..|+++.
T Consensus 157 ~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 157 MGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp TTCHHHHHHHHHHHHHHHHCCCG
T ss_pred cCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999998886553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=104.65 Aligned_cols=125 Identities=14% Similarity=0.008 Sum_probs=58.9
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFI 329 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~ 329 (523)
..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..|++..... |+ ...+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~ 80 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNLANAYI 80 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cchHHHHH
Confidence 4444444555555555555555554422 344444444555555555555555555555422 32 33444
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-------HHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNF-------AHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.+..++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.++++.
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 4444555555555555555555442 11122 234444444445555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-09 Score=101.62 Aligned_cols=270 Identities=9% Similarity=-0.041 Sum_probs=163.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCc-c----cHHHHHHHHHccCCchHHHHHHHHHHHhCCCC-Cc----hHHHH
Q 038200 58 VIKAYSNSCVPDQGVVFYLQMIKNGFMPNS-Y----TFVSLFGSCAKTGCVERGGMCHGLALKNGVDF-EL----PVMNS 127 (523)
Q Consensus 58 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 127 (523)
....+...|++++|...+++..... +++. . ++..+...+...|++++|...+++........ +. .++..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3445667788888888888877653 2221 1 34555566677788888888888776532111 11 22445
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCCchHH
Q 038200 128 LINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER----NVVSWNIMISGYSKSGNPGCS 203 (523)
Q Consensus 128 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a 203 (523)
+...+...|++++|...+++. .++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 556666677777776665543 2222222221 124556677788888999999
Q ss_pred HHHHHHHHHCCCC--C--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hHHHH----HHhhhhhhcCChHHH
Q 038200 204 LKLFREMMKSGFR--G--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN--IILDT----ALIDLYSKCQKVEVA 273 (523)
Q Consensus 204 ~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a 273 (523)
...+++....... + ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 9888887654211 1 234667777888888999999988888776422211 11111 233446678888888
Q ss_pred HHHHHhcCCCC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhcCcHHHHH
Q 038200 274 QRVFDSMADRN-------LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 274 ~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 345 (523)
...+++...+. ...+..+...+...|++++|...+++....... .+..++. ..+..+..++...|+.++|.
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 88888776532 124556667777788888888887776543100 0011122 24444555666677777777
Q ss_pred HHHHHhhH
Q 038200 346 KYFRQMID 353 (523)
Q Consensus 346 ~~~~~~~~ 353 (523)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.6e-11 Score=107.23 Aligned_cols=210 Identities=10% Similarity=0.023 Sum_probs=143.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC-------C--ChHHHHHHHHHHHhcCChHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD-------R--NLVCWNAMILGHCIHGKPEEG 304 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a 304 (523)
++++|...|.++ ...|...|++++|...|.+..+ + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 3345667777777777766533 1 135788888889999999999
Q ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhc-CcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHH
Q 038200 305 IKLFTALVNGTVAGGSISPDEITFIGVICACVRA-ELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEE 379 (523)
Q Consensus 305 ~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 379 (523)
+..|++........+....-..++..+...|... |++++|+..|++..+.+.-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988888763200000000135788888899996 9999999999998874211111 3568889999999999999
Q ss_pred HHHHHHhCCCCCCCCCc---h-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-----hHHHHHHHHH--hcCCh
Q 038200 380 AEEILRKMPEDNDNMSF---E-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-----RYQFLLNVYA--VAGQW 448 (523)
Q Consensus 380 A~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~ 448 (523)
|++.|+++.+....... . ...+..+..++...|++++|...++++.+++|.... .+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999998753211111 1 125677777889999999999999999999987443 3445666665 45678
Q ss_pred hHHHHHHHHH
Q 038200 449 EDVARVRELM 458 (523)
Q Consensus 449 ~~A~~~~~~m 458 (523)
++|+..|+++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-10 Score=103.11 Aligned_cols=213 Identities=8% Similarity=-0.031 Sum_probs=131.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhh
Q 038200 191 ISGYSKSGNPGCSLKLFREMMKS----GFRGN-DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYS 265 (523)
Q Consensus 191 i~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 265 (523)
...|...|++++|...|.+..+. |-+++ ..+|..+..+|...|++++|...+++..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 45566666666666666555432 11111 234555555555555555555555544431 11
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCCcCCC-------HHHHHHHHHHHhh
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIH-GKPEEGIKLFTALVNGTVAGGSISPD-------EITFIGVICACVR 337 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~p~-------~~~~~~ll~~~~~ 337 (523)
..|+...+ ..+++.+...|... |++++|+..|++.... .|+ ..++..+...+..
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-------~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW-------YAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-------HHhCCChHHHHHHHHHHHHHHHH
Confidence 11221111 23567788888886 9999999999888773 221 3467888899999
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCCh-----HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch--HHHHHHHHHHHH-
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNF-----AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE--SIMWVSLLSLCR- 409 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~- 409 (523)
.|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...+++..+....+... ...+..++.++.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 999999999999998741111221 156778888999999999999999988632221111 123444555554
Q ss_pred -hcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 410 -FQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 410 -~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
..+++++|...++++..++|.....+.
T Consensus 251 ~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 251 GDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp TCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 456788999998888888775443333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-10 Score=102.59 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=151.6
Q ss_pred hccccHHHHHHHHHHHHHc-------CCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC-----------ChHHHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRT-------SLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-----------NLVCWNAM 291 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l 291 (523)
...|++++|...+++..+. ..+....++..+...|...|++++|+..|+++.+. ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766652 22224677888888999999999999999887631 23578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-CcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc-----C-CCCChHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGG-SISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY-----K-IKPNFAH 363 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 363 (523)
...|...|++++|...|++......... ...|+ ..++..+...+...|++++|..+++++.+.. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 8889999999999999999988510000 01232 4567778888888999999999988887631 1 1223567
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCC-----CCCCch-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCC
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDN-----DNMSFE-SIMWVSLLSLCRFQGA------VAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~p~~ 431 (523)
+..+..+|...|++++|.+.++++.+.. ....+. ...+..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7788888889999999999998887420 001111 1222222222322222 333333333333334556
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 432 FSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-10 Score=99.94 Aligned_cols=192 Identities=11% Similarity=0.004 Sum_probs=125.7
Q ss_pred chHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-H
Q 038200 253 NIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-N---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-E 325 (523)
Q Consensus 253 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~ 325 (523)
+...+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|...|++++|+..|++.+.... -.|. .
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~ 89 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----IDPRVP 89 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTTHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----CCchhH
Confidence 344555556666666777777777766643 2 2 45666677777777888888888887777430 0112 3
Q ss_pred HHHHHHHHHHhh--------cCcHHHHHHHHHHhhHhcCCCCChHHH-----------------HHHHHHHHcCCChHHH
Q 038200 326 ITFIGVICACVR--------AELLTEGRKYFRQMIDFYKIKPNFAHY-----------------WCMANLYAGAELTEEA 380 (523)
Q Consensus 326 ~~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A 380 (523)
..+..+..++.. .|++++|...|+++.+.+ +.+.... ..+...|.+.|++++|
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 455666666766 788888888888877742 2222222 5568888999999999
Q ss_pred HHHHHhCCCCCCCCCchHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHhcCC
Q 038200 381 EEILRKMPEDNDNMSFESIMWVSLLSLCRFQ----------GAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAVAGQ 447 (523)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 447 (523)
+..|+++.+...........+..+..++... |++++|...++++++..|+++. +...+..++.+.|+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 9999988753221122345666777777755 8889999999999999998753 44445555555554
Q ss_pred hhH
Q 038200 448 WED 450 (523)
Q Consensus 448 ~~~ 450 (523)
+++
T Consensus 248 ~~~ 250 (261)
T 3qky_A 248 LEG 250 (261)
T ss_dssp HHT
T ss_pred hhh
Confidence 443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-09 Score=94.33 Aligned_cols=140 Identities=10% Similarity=0.025 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCC-----ChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 238 GRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADR-----NLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 238 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
+...+++....+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 223333334455555555555555555554221 23344445555555555555555555554
Q ss_pred hCCCCCCCcCC-----CHHHHHHHHHH--HhhcC--cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHH
Q 038200 313 NGTVAGGSISP-----DEITFIGVICA--CVRAE--LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEI 383 (523)
Q Consensus 313 ~~~~~~~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 383 (523)
+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.
T Consensus 164 ~-------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~ 233 (310)
T 3mv2_B 164 N-------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGI 233 (310)
T ss_dssp H-------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred h-------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHH
Confidence 4 234 23333444433 11122 455555555555432 23322223333345555555555555
Q ss_pred HHhCC
Q 038200 384 LRKMP 388 (523)
Q Consensus 384 ~~~~~ 388 (523)
++.+.
T Consensus 234 L~~l~ 238 (310)
T 3mv2_B 234 VELLL 238 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-10 Score=116.75 Aligned_cols=160 Identities=11% Similarity=0.036 Sum_probs=85.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFI 329 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~ 329 (523)
...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++. .|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-------~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-------SPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHH
Confidence 34444455555555555555555544422 23445555555555555555555555555552 233 44555
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHH
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLC 408 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 408 (523)
.+..++...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|++.|++.++ +.| +...+..+...+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~----l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK----LKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCChHHHhhhhhHH
Confidence 5555555666666666666655542 122345555566666666666666666665553 233 244555555556
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 038200 409 RFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~ 426 (523)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 666666666666555554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-09 Score=99.36 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=133.8
Q ss_pred cCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCC-chHHHHHHhh
Q 038200 197 SGNPGCSLKLFREMMKS-------GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRT------SLKP-NIILDTALID 262 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~ 262 (523)
.|++++|..+|++..+. ..+....++..+..++...|++++|...++++.+. +..| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 45555555555444331 11223445566666666667777777666666543 1122 3456666677
Q ss_pred hhhhcCChHHHHHHHHhcCC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHH
Q 038200 263 LYSKCQKVEVAQRVFDSMAD----------R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFI 329 (523)
Q Consensus 263 ~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~ 329 (523)
.|...|++++|...|++..+ + ...++..+...|...|++++|...++++....... ++..|+ ..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777777777776666532 1 23467777888888888888888888877640000 001233 45777
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhc------CCCC-ChHHHHHHHHHHHcCC------ChHHHHHHHHhCCCCCCCCCc
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFY------KIKP-NFAHYWCMANLYAGAE------LTEEAEEILRKMPEDNDNMSF 396 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~ 396 (523)
.+...+...|++++|..+++++.+.. ...+ ....+..+...+...+ .+..+...++..... .+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 250 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD---SPT 250 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC---CHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC---CHH
Confidence 88888999999999999998887631 1122 2233433443333322 344455555554421 223
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
....+..+...+...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567778888999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-09 Score=93.45 Aligned_cols=176 Identities=8% Similarity=0.017 Sum_probs=128.2
Q ss_pred HHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc-CCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 273 AQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI-SPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 273 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..+ - .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-----~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-----EAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677776653 455566677888888999999999999887765 2 125667788888999999999999999
Q ss_pred HHhhHhcCCCC-----ChHHHHHHHHH--HH--cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHH
Q 038200 349 RQMIDFYKIKP-----NFAHYWCMANL--YA--GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 349 ~~~~~~~~~~~-----~~~~~~~l~~~--~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
++|.+. .| +..+...|+.+ .. ..+++.+|..+|+++.+. .|+...-..++.++...|++++|++
T Consensus 160 ~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 160 DNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 998884 34 24445555544 22 234889999999998753 4542222333447888899999999
Q ss_pred HHHHHhhc----------CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 420 LAKSFVDM----------DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 420 ~~~~~~~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++.+.+. +|+++.++..++.+....|+ +|.++++++++..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 99877765 48888888888877777886 8888888887753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-09 Score=96.37 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=139.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCC
Q 038200 282 DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKI 357 (523)
Q Consensus 282 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (523)
..+...+..+...+...|++++|+..|++++... |+ ...+..+..++...|++++|...|+++.+.+.-
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 3466777888889999999999999999999854 43 567888889999999999999999999985322
Q ss_pred CCC-hHHHHHHHHHHHc--------CCChHHHHHHHHhCCCCCCCCCchHHHH--------------HHHHHHHHhcCCH
Q 038200 358 KPN-FAHYWCMANLYAG--------AELTEEAEEILRKMPEDNDNMSFESIMW--------------VSLLSLCRFQGAV 414 (523)
Q Consensus 358 ~~~-~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~ 414 (523)
.|. ...+..+..++.. .|++++|...|+++.+...+........ ..+...+...|++
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 233 4567788888888 9999999999999885421111111121 4567788999999
Q ss_pred HHHHHHHHHHhhcCCCC---hhhHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 038200 415 AMVERLAKSFVDMDPQD---FSRYQFLLNVYAVA----------GQWEDVARVRELMKKR 461 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 461 (523)
++|...++++++..|++ +.++..++.+|... |++++|...++++.+.
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999974 45888999999877 8999999999999775
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-09 Score=92.13 Aligned_cols=165 Identities=15% Similarity=0.095 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-H
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNF-A 362 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 362 (523)
+..+...+...|++++|+..|+++.... |+ ...+..+..++.+.|++++|...|+++.+.+.-.+.. .
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 3344445555566666666666655532 22 2344555555556666666666666655532111111 1
Q ss_pred HHHHHHHHHH------------------cCCChHHHHHHHHhCCCCCCCCCchH-HH-----------------HHHHHH
Q 038200 363 HYWCMANLYA------------------GAELTEEAEEILRKMPEDNDNMSFES-IM-----------------WVSLLS 406 (523)
Q Consensus 363 ~~~~l~~~~~------------------~~g~~~~A~~~~~~~~~~~~~~~~~~-~~-----------------~~~l~~ 406 (523)
.+..+..++. ..|++++|...|+++++. .|+. .. ...+..
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~ 155 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG----YPNSQYTTDATKRLVFLKDRLAKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH----CcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2323333332 356777777777777653 2221 11 123455
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDF---SRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
.+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 68889999999999999999999875 5789999999999999999999999987653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=86.79 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=104.2
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.++++... .+.+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHH
Confidence 4566677778888888888888888763 2345677777888888888888888888887743 2334567777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...|++++|...++++.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888999999999999999888888888899999999999999999999888664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-11 Score=95.76 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=106.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 291 MILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 291 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
|...+...|++++|+..+...... .|+ ...+..+...|.+.|++++|.+.|+++.+. -+-++..|..+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~-------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS-------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGL 73 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS-------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344455667788888888777653 343 345566777888888888888888888873 3346778888888
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVER-LAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
+|...|++++|+..|++..+ +.| +...+..+...+...|++++|.. +++++++++|+++.+|.....++...|+
T Consensus 74 ~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVE----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHcCchHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888875 344 46677788888888888876554 4688889999988888888888887775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.3e-09 Score=83.77 Aligned_cols=133 Identities=15% Similarity=0.197 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
.|..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHH
Confidence 56777888888899999999999888754 335667788888888899999999999998874 3445777888
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+.+|+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888999999999999999888753 2335667777888889999999999999999888774
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-09 Score=97.00 Aligned_cols=177 Identities=7% Similarity=-0.073 Sum_probs=144.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 270 VEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 270 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
.+.....+......+...+..+...+...|++++|...|++.... .| +...+..+...+...|++++|...+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~~~~~g~~~~A~~~l 174 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-------SNQNGEIGLLLAETLIALNRSEDAEAVL 174 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------TTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 445556666666556677888888999999999999999999985 35 4678888899999999999999999
Q ss_pred HHhhHhcCCCCChHHHHH-HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 349 RQMIDFYKIKPNFAHYWC-MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
+++... .|+...... ....+...++.++|.+.+++..+. .+.+...+..+...+...|++++|...++++++.
T Consensus 175 ~~~~~~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 175 XTIPLQ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp TTSCGG---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCchh---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 999764 455443332 333466778888899999988854 2445778888899999999999999999999999
Q ss_pred CCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038200 428 DPQD--FSRYQFLLNVYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 428 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 459 (523)
+|++ ..++..|+.+|...|+.++|...+++..
T Consensus 249 ~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9987 8899999999999999999999888754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=114.98 Aligned_cols=149 Identities=12% Similarity=0.067 Sum_probs=73.8
Q ss_pred hccccHHHHHHHHHHHH--------HcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhc
Q 038200 230 GRSARFNEGRSVHGYTV--------RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIH 298 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 298 (523)
...|++++|.+.++++. +.. +.+...+..+..+|...|++++|++.|+++.+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555554 221 22344445555555555555555555555432 2344555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
|++++|+..|++..+. .| +...+..+..++.+.|++++ ...|+++.+. .+.+...|..+..+|.+.|++
T Consensus 481 g~~~~A~~~~~~al~l-------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT-------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCH
Confidence 5555555555555552 23 23444455555555555555 5555555542 122344455555555555555
Q ss_pred HHHHHHHHhCCC
Q 038200 378 EEAEEILRKMPE 389 (523)
Q Consensus 378 ~~A~~~~~~~~~ 389 (523)
++|.+.|+++.+
T Consensus 551 ~~A~~~~~~al~ 562 (681)
T 2pzi_A 551 VGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHTSCT
T ss_pred HHHHHHHHhhcc
Confidence 555555555553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-07 Score=89.81 Aligned_cols=203 Identities=11% Similarity=0.003 Sum_probs=120.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHH-HHHHHh
Q 038200 201 GCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVA-QRVFDS 279 (523)
Q Consensus 201 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~ 279 (523)
+.+..+|++++.. .+.+...|...+.-+.+.|+.+.|..+|++.... +.+...+.. |....+.++. ..+.+.
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 4467788888875 3456677777777788889999999999999987 334433332 2221111111 112211
Q ss_pred cC----------C--CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh-hcCcHHHHHH
Q 038200 280 MA----------D--RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-RAELLTEGRK 346 (523)
Q Consensus 280 ~~----------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~ 346 (523)
.. . .....|...+....+.++.+.|..+|.+. ... ..+...|......-. ..++.+.|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~------~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE------GVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS------CCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC------CCChHHHHHHHHHHHHHCCChHHHHH
Confidence 10 0 01234566666666667788888888877 321 123333332222111 1235778888
Q ss_pred HHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 347 YFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+|+...+.+ +-++..+...++.....|+.+.|..+|+++.. ....|...+..-...|+.+.+..++++..+
T Consensus 342 ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888877743 22344555566666777888888888888741 355666666666677887777777777664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-09 Score=105.77 Aligned_cols=162 Identities=11% Similarity=0.038 Sum_probs=126.2
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
.|++++|++.|++..+ .+...|..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH------PGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 4788999999998865 357889999999999999999999999999854 3357788899999999999999
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc---CCHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ---GAVAMVERL 420 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 420 (523)
|.+.+++..+. .+.+...+..+..+|.+.|++++|.+.+++..+. .+.+...+..+...+... |+.++|...
T Consensus 76 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 76 AAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999884 3446788999999999999999999999998853 233567788888889999 999999999
Q ss_pred HHHHhhcCCCChhhHHHHH
Q 038200 421 AKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 421 ~~~~~~~~p~~~~~~~~l~ 439 (523)
++++.+.+|.+...|..++
T Consensus 151 ~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 151 VRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHhcCCcccChHHHhC
Confidence 9999999998887777766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=87.76 Aligned_cols=181 Identities=9% Similarity=-0.002 Sum_probs=126.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 038200 221 TMASVLTACGRSARFNEGRSVHGYTVRTSLKPN-IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHG 299 (523)
Q Consensus 221 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 299 (523)
.+......+...|++++|...|++..+.. |+ ...+... ...... .........+..+|...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~~----------~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKNS----------EISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTTS----------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcchh----------hhhHHHHHHHHHHHHHCC
Confidence 34445556778888888888888887753 32 2222211 000000 011223455888899999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC--h
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL--T 377 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~ 377 (523)
++++|+..|++.++.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|...|+ .
T Consensus 69 ~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999853 235778889999999999999999999999984 34467888888888866554 4
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
+.+...++.... ..|....+.....++...|++++|...+++++++.|+
T Consensus 141 ~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 141 KKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 556677777662 3444445555566777889999999999999999995
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-10 Score=89.82 Aligned_cols=126 Identities=10% Similarity=-0.040 Sum_probs=103.6
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
|...+...|++++|+..++..... .+-+...+..+...|.+.|++++|++.|++.++. .+.+...|..+...+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 445566778999999999988762 2224566778999999999999999999999863 23357888889999999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV-RELMKKR 461 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 461 (523)
.|++++|...++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765 4777554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.7e-08 Score=84.24 Aligned_cols=173 Identities=8% Similarity=-0.052 Sum_probs=129.8
Q ss_pred HHHHHHhcCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcC----cHHHHHHH
Q 038200 273 AQRVFDSMAD-RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAE----LLTEGRKY 347 (523)
Q Consensus 273 a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~ 347 (523)
|++.|++..+ .+...+..+...|...+++++|+.+|++..+.+ +...+..|...|.. + ++++|..+
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3444444332 456677777777777888888888888887754 45566667777776 6 88889888
Q ss_pred HHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCc---hHHHHHHHHHHHHh----cCCHHH
Q 038200 348 FRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSF---ESIMWVSLLSLCRF----QGAVAM 416 (523)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~ 416 (523)
|++..+. + ++..+..|...|.. .+++++|+++|++..+. .+ ....+..+...|.. .++.++
T Consensus 76 ~~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 76 AEKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 8888763 2 56677778888877 78899999999988853 33 25667777777777 778999
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCCC
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVA-G-----QWEDVARVRELMKKRRM 463 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 463 (523)
|..+++++.+. |.++.++..|+.+|... | ++++|...|++..+.|.
T Consensus 148 A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999888 55677888899988764 3 88999999998877764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=87.97 Aligned_cols=159 Identities=7% Similarity=-0.037 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHH
Q 038200 289 NAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMA 368 (523)
Q Consensus 289 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 368 (523)
..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+. .|++..+..+.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~ 80 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIA 80 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHH
Confidence 344555666677777777776666532 223456666666777777777777777776653 22333322222
Q ss_pred HH-HHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC--hhhHHHHHHHHHh
Q 038200 369 NL-YAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD--FSRYQFLLNVYAV 444 (523)
Q Consensus 369 ~~-~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~ 444 (523)
.. +...+...+|.+.+++..+. .| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAA----NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 11 11222233467777777642 44 46777888888899999999999999999988863 5588899999999
Q ss_pred cCChhHHHHHHHHHHh
Q 038200 445 AGQWEDVARVRELMKK 460 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~ 460 (523)
.|+.++|...|++...
T Consensus 157 ~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 157 LGQGNAIASKYRRQLY 172 (176)
T ss_dssp HCSSCHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHH
Confidence 9999999998887643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=102.98 Aligned_cols=170 Identities=8% Similarity=-0.100 Sum_probs=97.5
Q ss_pred hhcCChHHHHHHHHhcC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 265 SKCQKVEVAQRVFDSMA-----------DRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 265 ~~~~~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
...|++++|++.+++.. ..+...+..+..+|...|++++|+..|+++.+.. +-+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV------GWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------CCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC------cchHHHHHHHHH
Confidence 44566666666666554 1234556666666666666666666666666532 223445555666
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 413 (523)
++...|++++|...|+++.+. .+.+...|..+..+|.+.|++++ ++.|+++.+. .+.+...+..+..++...|+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCC
Confidence 666666666666666666652 22245555666666666666666 6666665532 12234555556666666666
Q ss_pred HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
+++|...++++.+++|++..++..++.+|...|
T Consensus 550 ~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 550 RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 666666666666666666666666666655433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-09 Score=95.85 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=154.5
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 196 KSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR-SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 196 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
..|++++|.+++++..+.. +.. +.. .++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888776532 111 112 46777777776654 34566778888888
Q ss_pred HHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC--HHHHHHHHHHHhhcCcHHH
Q 038200 275 RVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD--EITFIGVICACVRAELLTE 343 (523)
Q Consensus 275 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~ 343 (523)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++........ -.|. ..++..+...|.. |++++
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~ 133 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSK 133 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHH
Confidence 87776643 11 3478888888999999999999998876532000 0122 3577788888888 99999
Q ss_pred HHHHHHHhhHhcCCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCch-HHHHHHHHHHHHhcCCHHH
Q 038200 344 GRKYFRQMIDFYKIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSFE-SIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~ 416 (523)
|+..|++..+.+.-.. ...++..+...|.+.|++++|++.|++..+... +..+. ...+..+...+...|++++
T Consensus 134 A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 213 (307)
T 2ifu_A 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA 213 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998876421111 146788889999999999999999998874210 11111 2355666667788899999
Q ss_pred HHHHHHHHhhcCCCChh-----hHHHHHHHHHhcCChhHHHH
Q 038200 417 VERLAKSFVDMDPQDFS-----RYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 453 (523)
|...++++. +.|.... ....++.++ ..|+.+.+..
T Consensus 214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999999 8886432 244555555 5677666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=102.27 Aligned_cols=150 Identities=7% Similarity=-0.091 Sum_probs=111.7
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 33578888899999999999999999998755 35678899999999999999999999
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC---CChHHHHHHHH
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA---ELTEEAEEILR 385 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~ 385 (523)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++... |++++|.+.++
T Consensus 81 ~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 81 QQASDAA------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9998853 334678888999999999999999999999884 344578888899999999 99999999999
Q ss_pred hCCCC
Q 038200 386 KMPED 390 (523)
Q Consensus 386 ~~~~~ 390 (523)
+..+.
T Consensus 153 ~al~~ 157 (568)
T 2vsy_A 153 AAVAQ 157 (568)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98854
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=87.95 Aligned_cols=190 Identities=12% Similarity=0.031 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC--CC-hH---HHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD--RN-LV---CWNAM 291 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~~~~l 291 (523)
..+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344445555666666666666666666543211 123445555566666666666666655543 22 11 23333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH-------
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY------- 364 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 364 (523)
..++...+.. .+. .|..+...+...|++++|...|+++.+.+ +-+...+
T Consensus 85 g~~~~~~~~~-----~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-----------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHC------------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh-----------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH
Confidence 3333332100 000 01111122234567777777777777632 2222221
Q ss_pred ----------HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh
Q 038200 365 ----------WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS 433 (523)
Q Consensus 365 ----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 433 (523)
..+...|.+.|++++|+..|+++++...+.+.....+..+..++...|+.++|...++.+....|++..
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 345677889999999999999988642111112356778888999999999999999999998887543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.3e-09 Score=80.25 Aligned_cols=116 Identities=9% Similarity=-0.072 Sum_probs=82.1
Q ss_pred cCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 321 ISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 321 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
+.|+ ...+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.++. -+.+..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~ 82 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIK 82 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhH
Confidence 3454 345666777777788888888888877763 3445677777777788888888888888777643 123456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.|..+..++...|++++|...++++++++|+++.++..|..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 677777777778888888888888888888777777666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-07 Score=83.95 Aligned_cols=169 Identities=5% Similarity=-0.063 Sum_probs=126.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHH----HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEI----TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN--- 360 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 360 (523)
+...+..+...|++++|..++++...... ..|+.. .+..+...+...+++++|...++++.+...-.++
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEE----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcccc----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 33446778899999999999999887531 223322 2334666777888999999999999874122223
Q ss_pred -hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC---CCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----
Q 038200 361 -FAHYWCMANLYAGAELTEEAEEILRKMPEDND---NMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ----- 430 (523)
Q Consensus 361 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----- 430 (523)
..+++.+...|...|++++|.+.++++.+.-. +..+. ..++..+...|...|++++|...+++++++.+.
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 33688999999999999999999998873100 12232 457888888999999999999999999985432
Q ss_pred -ChhhHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 038200 431 -DFSRYQFLLNVYAVAGQ-WEDVARVRELMKK 460 (523)
Q Consensus 431 -~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 460 (523)
-..+|..++.+|.+.|+ +++|.+.+++...
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 25689999999999995 6999999887754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=88.56 Aligned_cols=170 Identities=6% Similarity=-0.090 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CH----HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC--CC
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DE----ITFIGVICACVRAELLTEGRKYFRQMIDFYK--IK 358 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~ 358 (523)
..+...+..+...|++++|.+.+.+..+.. ... +. ..+..+...+...|++++|...+++..+... ..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccc-----cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345566778889999999999999888754 111 11 2234455667788999999999999875311 11
Q ss_pred CC--hHHHHHHHHHHHcCCChHHHHHHHHhCCCC--CCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--
Q 038200 359 PN--FAHYWCMANLYAGAELTEEAEEILRKMPED--NDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-- 430 (523)
Q Consensus 359 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-- 430 (523)
+. ..+|+.+...|...|++++|.+.++++.+. ..+..+ ...++..+...|...|++++|...+++++++.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 11 458889999999999999999999887621 000112 2357888888999999999999999999875432
Q ss_pred ----ChhhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038200 431 ----DFSRYQFLLNVYAVAGQWEDV-ARVRELMKK 460 (523)
Q Consensus 431 ----~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 460 (523)
-..+|..++.+|.+.|++++| ...+++...
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 256889999999999999999 777776643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-09 Score=83.10 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred CCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+.| +...+..+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...|+++++++|+++.+|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 344 3567778888899999999999999998863 233577888888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..++.+|...|++++|...|++..+..
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=87.15 Aligned_cols=160 Identities=8% Similarity=-0.017 Sum_probs=116.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHH----------------HHHHHhhcCcHHHHHHHHHH
Q 038200 288 WNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIG----------------VICACVRAELLTEGRKYFRQ 350 (523)
Q Consensus 288 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~ 350 (523)
+......+...|++++|+..|++.+.. .|+ ...+.. +..++...|++++|...|++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 79 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334455667788888888888888773 354 344555 78889999999999999999
Q ss_pred hhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhc
Q 038200 351 MIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGA--VAMVERLAKSFVDM 427 (523)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~ 427 (523)
..+. .+-+...+..+..+|...|++++|.+.|+++.+. .| +...+..+...+...|+ .+.+...++++...
T Consensus 80 al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 153 (208)
T 3urz_A 80 LLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL----EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153 (208)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC
T ss_pred HHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC
Confidence 9884 3446788899999999999999999999998863 44 46677777777665543 44556666665543
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 428 DPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 428 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.| ....+..++.++...|++++|+..|++..+.
T Consensus 154 ~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 154 TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33 2234566788888899999999999988554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-07 Score=83.56 Aligned_cols=228 Identities=7% Similarity=-0.012 Sum_probs=123.7
Q ss_pred CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCCCchHHHHHHhhhh----hhc---
Q 038200 198 GNPGCSLKLFREMMKSGFRGN-DKTMASVLTACGRSA--RFNEGRSVHGYTVRTSLKPNIILDTALIDLY----SKC--- 267 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 267 (523)
...++|+.++..++.. .|+ ...|+.-..++...+ ++++++..++.+...... +..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3346788888888774 343 445566666666666 788888888877776432 444444333333 333
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc--
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE--EGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-- 340 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-- 340 (523)
+++++++++++++.+ .|..+|+.-...+.+.|.++ ++++.++++++.. +-|...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------LKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHSSGGGC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhccccc
Confidence 566666666666643 45566666666666666666 6666666666643 2244455544444444444
Q ss_pred ----HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH-HHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHH
Q 038200 341 ----LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE-AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVA 415 (523)
Q Consensus 341 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 415 (523)
++++++.++++... .+-|...|+.+...+.+.|+..+ +.++..++.+.+..-..+...+..++..+...|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 55666666665552 33345555555555555555333 334444444211000123344444445555555555
Q ss_pred HHHHHHHHHhh-cCCCChhhHH
Q 038200 416 MVERLAKSFVD-MDPQDFSRYQ 436 (523)
Q Consensus 416 ~a~~~~~~~~~-~~p~~~~~~~ 436 (523)
+|.++++.+.+ .+|-....|.
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHH
Confidence 55555555554 4554444333
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-06 Score=78.98 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=162.5
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC--ChHHHHHHHHhcCC---CChHHHHHHHHHH----Hhc---CCh
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ--KVEVAQRVFDSMAD---RNLVCWNAMILGH----CIH---GKP 301 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 301 (523)
..++|+..++.++..+. -+..+|+.-..++...+ +++++++.++.+.. .+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34578888888888652 25667777777777777 89999999888754 3455666654444 444 788
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH--HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC---
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT--EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL--- 376 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 376 (523)
++++.+++++.+.. +-+..+|..-.-.+.+.|.++ +++++++++.+. -+-|...|+.-..++...|+
T Consensus 127 ~~EL~~~~~~l~~~------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccch
Confidence 99999999998854 345667777766777777777 899999999884 45577788777777777776
Q ss_pred ---hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhcC---CCChhhHHHHHHHHHhcCChh
Q 038200 377 ---TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA-VAMVERLAKSFVDMD---PQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 377 ---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 449 (523)
++++++.+++++.. .+-|...|+.+...+...|+ .+.+..+.+++.+++ |.++.++..++.+|.+.|+.+
T Consensus 199 ~~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88899998888754 34567788888777877777 455667888877766 778888999999999999999
Q ss_pred HHHHHHHHHHh
Q 038200 450 DVARVRELMKK 460 (523)
Q Consensus 450 ~A~~~~~~m~~ 460 (523)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-08 Score=83.88 Aligned_cols=121 Identities=10% Similarity=0.036 Sum_probs=55.4
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
...+...|++++|...|+++. .|+...+..+...|...|++++|.+.+++..+. .+.+...+..+...+...
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHc
Confidence 334444444444444444432 234444444444444445555555444444422 112233444444444444
Q ss_pred CCHHHHHHHHHHHhhcCCCCh----------------hhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 412 GAVAMVERLAKSFVDMDPQDF----------------SRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|++++|...++++.+..|.+. .++..++.+|...|++++|...+++..+
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555555555544444333 4445555555555555555555554433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-07 Score=80.63 Aligned_cols=159 Identities=8% Similarity=-0.016 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc----cHHHHHHHHHHHHHcCCCCchHHH
Q 038200 182 RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA----RFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 182 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
.+..++..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+.+ +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 455666666667777777777777777776654 44555556666665 5 6777777777776654 44555
Q ss_pred HHHhhhhhh----cCChHHHHHHHHhcCCCC-----hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCCcCCC
Q 038200 258 TALIDLYSK----CQKVEVAQRVFDSMADRN-----LVCWNAMILGHCI----HGKPEEGIKLFTALVNGTVAGGSISPD 324 (523)
Q Consensus 258 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~p~ 324 (523)
..|...|.. .+++++|+..|++..+.+ ...+..|...|.. .+++++|+.+|++..+.+ .+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-------~~ 161 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-------RT 161 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-------CT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-------CC
Confidence 556666655 566777777777665532 4566666666666 566777777777666642 23
Q ss_pred HHHHHHHHHHHhhc-C-----cHHHHHHHHHHhhHh
Q 038200 325 EITFIGVICACVRA-E-----LLTEGRKYFRQMIDF 354 (523)
Q Consensus 325 ~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~ 354 (523)
...+..|...|... | +.++|..+|++..+.
T Consensus 162 ~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 162 GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 33455555555432 2 666666666666654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=86.28 Aligned_cols=166 Identities=8% Similarity=-0.010 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--CChHHH-HHHH
Q 038200 216 RGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--RNLVCW-NAMI 292 (523)
Q Consensus 216 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~-~~li 292 (523)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.. |+.... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556667777778888888888888887764 23567777788888888888888888888765 433322 2223
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYA 372 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 372 (523)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 33556677777888888877743 334667777777888888888888888888774111122567777888888
Q ss_pred cCCChHHHHHHHHhCC
Q 038200 373 GAELTEEAEEILRKMP 388 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~ 388 (523)
..|+.++|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 8888777777776543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.4e-08 Score=80.55 Aligned_cols=130 Identities=13% Similarity=-0.015 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++..+. .+.+...+..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 35667777888999999999999998874 3446788889999999999999999999998853 234567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHh
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV--YAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 460 (523)
..+...|++++|...++++.+..|.++..+..+..+ +...|++++|+..+++...
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999999999988877555444 8888999999999887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.8e-08 Score=87.54 Aligned_cols=231 Identities=9% Similarity=-0.018 Sum_probs=151.9
Q ss_pred hcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 165 RSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 165 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
..|++++|.+++++..+.....+ +...++++.|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 35677888888876653110000 11146777777777654 3456677888888888877
Q ss_pred HHHcCC---CC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC-------C--ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038200 245 TVRTSL---KP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD-------R--NLVCWNAMILGHCIHGKPEEGIKLFTA 310 (523)
Q Consensus 245 ~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 310 (523)
..+... .+ -..+++.+..+|...|++++|+..|++..+ + -..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 665311 11 145777788888888888888888876532 1 13567888888888 999999999998
Q ss_pred HHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC---CCCC-hHHHHHHHHHHHcCCChHHHHHHHHh
Q 038200 311 LVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYK---IKPN-FAHYWCMANLYAGAELTEEAEEILRK 386 (523)
Q Consensus 311 m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 386 (523)
........+.......++..+...+...|++++|+..|++..+... ..+. ...+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8763200000000145788888999999999999999999887421 1111 23666777888889999999999999
Q ss_pred CCCCCCCCCch--HHHHHHHHHHHHhcCCHHHHHH
Q 038200 387 MPEDNDNMSFE--SIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 387 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
.. ....+... ......++.++ ..|+.+.+..
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 87 43333222 23344455555 5677666555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-09 Score=83.18 Aligned_cols=99 Identities=10% Similarity=0.017 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|...|+++... .+.+...|..+..++...|++++|...++++++++|+++.++..++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4556677788888888888888888887753 2335677777778888888888898888888888888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999988888887664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-08 Score=77.32 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=90.8
Q ss_pred CCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 357 IKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 357 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+.|+ ...+......|.+.|++++|++.|++.++. .+.+...|..+..++...|++++|...++++++++|+++.+|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4454 466778899999999999999999998863 244678888899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..++.+|...|++++|++.|++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=78.51 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=69.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCHHHHHHHHhcCCC--CChhHHHHHHHH-HHhcC
Q 038200 125 MNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDMSAAHELFDIMPE--RNVVSWNIMISG-YSKSG 198 (523)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~-~~~~~ 198 (523)
+..+...+.+.|++++|...|++.. +.+...+..+...+...|++++|+..|++... |+...+..+... +...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc
Confidence 3344444555555555555555554 22344455555555555555555555555543 222211111111 11112
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chHHHHHHhhhhhhcCChHHHHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKP-NIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
....|...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223445555554431 1234445555555555555555555555555443221 1334444455555555555554444
Q ss_pred H
Q 038200 278 D 278 (523)
Q Consensus 278 ~ 278 (523)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-08 Score=76.74 Aligned_cols=121 Identities=7% Similarity=-0.111 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
+.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~ 87 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGY 87 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHH
Confidence 334567788888888899999999999988763 3446778888888888999999999999888753 23356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
..+...+...|++++|...++++.+.+|.+...+..++.++...|+
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 7888888899999999999999999999888888888888877664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-08 Score=74.79 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++... .+.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHH
Confidence 467778888888999999999999998874 3446778888899999999999999999988753 23456777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcC
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAG 446 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 446 (523)
...+...|++++|...++++.+..|+++..+..++.++...|
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999999999998888888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.7e-08 Score=75.63 Aligned_cols=121 Identities=9% Similarity=-0.061 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 403 (523)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++..+. .+.+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 4557777888889999999999999999874 3446788888999999999999999999998853 2334677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChh
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWE 449 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 449 (523)
+...+...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999999999888763
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-07 Score=80.29 Aligned_cols=144 Identities=11% Similarity=-0.030 Sum_probs=83.1
Q ss_pred HHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 258 TALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 258 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
..+...+...|++++|+..|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHH
Confidence 3445555566666666666666665566666666666666666666666666666532 2234555556666666
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 416 (523)
.|++++|...|+++.+. .+.+.... +. .... ...| ....+..+..++...|++++
T Consensus 84 ~~~~~~A~~~~~~al~~--~~~~~~~~------~~------------~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQ--LRGNQLID------YK------------ILGL----QFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp TTCHHHHHHHHHHHHHT--TTTCSEEE------CG------------GGTB----CCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHh--CCCccHHH------HH------------Hhcc----ccCccchHHHHHHHHHHHHccCHHH
Confidence 66666666666666552 11111000 00 0000 0223 24566667777788888888
Q ss_pred HHHHHHHHhhcCCCC
Q 038200 417 VERLAKSFVDMDPQD 431 (523)
Q Consensus 417 a~~~~~~~~~~~p~~ 431 (523)
|...++++.+..|++
T Consensus 140 A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcCccc
Confidence 888888888887754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=91.33 Aligned_cols=189 Identities=7% Similarity=-0.093 Sum_probs=102.6
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
..+..+...+...|++++|+..|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l 78 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAHFFL 78 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHH
Confidence 3444444555555555555555554422 244556666666666666666666666666532 2234566666
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
..++...|++++|...|+++.+. .|+ ...+...+....+..+...... ..... ...+..+...+ ..+ .
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~i~~~l-~~l-~ 147 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERR-----IHQESELHSYL-TRL-I 147 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTC-----CCCCCHHHHHH-HHH-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHH-----HhhhHHHHHHH-HHH-H
Confidence 66666777777777766666553 111 0011111111111111111111 11112 22333332222 222 2
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHh
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA-GQWEDVARVRELMKK 460 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 460 (523)
.|+.++|.+.++.+.+.+|++......+...+.+. +++++|.++|.+..+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 67888888888888888888777777777777666 678888888887755
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6.9e-08 Score=89.65 Aligned_cols=129 Identities=8% Similarity=-0.077 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC---------------hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN---------------FAHYWCMANLYAGAELTEEAEEILRKMPEDN 391 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 391 (523)
.+..+...+.+.|++++|...|++..+. .+.+ ...|..+..+|.+.|++++|++.++++++.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4444444555555555555555555442 1111 478888999999999999999999998864
Q ss_pred CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 038200 392 DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDV-ARVRELMKK 460 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 460 (523)
.+.+...+..+..++...|++++|...++++++++|+++.++..++.++.+.|++++| ...++.|..
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2335778888889999999999999999999999999999999999999999999998 446666643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=82.91 Aligned_cols=123 Identities=7% Similarity=0.036 Sum_probs=96.4
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 413 (523)
+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.++++.+. .+.+...+..+... +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCC
Confidence 34567888888888888774 3446788888889999999999999999888753 12356667777777 778888
Q ss_pred H--HHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 414 V--AMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 414 ~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+ ++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 999999999999999888899999999999999999999999887754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.8e-08 Score=78.13 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+.+.|++++|.+.|+++... .+.+...|..+..++...|++++|...++++++++|+++..+..++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455666777788888888888888887753 2335667777777888888888888888888888888888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=77.47 Aligned_cols=196 Identities=10% Similarity=-0.091 Sum_probs=130.0
Q ss_pred ccccHHHHHHHHHHHHHcCCCCchHHHHHH-------hhhhhhcCChHHHHHHHHhcCC--C-------C----------
Q 038200 231 RSARFNEGRSVHGYTVRTSLKPNIILDTAL-------IDLYSKCQKVEVAQRVFDSMAD--R-------N---------- 284 (523)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~--~-------~---------- 284 (523)
..++...|.+.|.++.+... -....|..+ ...+...++..+++..+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 35666666666666666532 134445444 2333333334444444443322 1 1
Q ss_pred -----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 285 -----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 285 -----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
...+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... ..|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCc
Confidence 1234456677888899999999998887643 65545566666788899999999999866542 122
Q ss_pred C--hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 360 N--FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 360 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
. ...+..+..++...|++++|++.|++.... ...| ..........++...|+.++|...|+++...+|+ +.+.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g--~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDS--PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC--CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 1 346777888999999999999999998732 1214 3345666777889999999999999999999997 6665
Q ss_pred HHHH
Q 038200 436 QFLL 439 (523)
Q Consensus 436 ~~l~ 439 (523)
..|.
T Consensus 245 ~aL~ 248 (282)
T 4f3v_A 245 AALK 248 (282)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-06 Score=84.47 Aligned_cols=360 Identities=8% Similarity=-0.070 Sum_probs=197.9
Q ss_pred hCC-CchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCC-hHHH
Q 038200 64 NSC-VPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGA-MDCA 141 (523)
Q Consensus 64 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 141 (523)
+.| +++.|..+|+.+... -|. ++++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 477888888887763 233 8999999999999874 4699999999988877663 3445
Q ss_pred HHHHhhcC------CCCcchHHHHHHHHH----hcCCHHHHHHHHhcCCC-CC--h-hHHHHHHHHHHhcC---------
Q 038200 142 RNMFVQMS------PRDLISWNSIVSGHV----RSGDMSAAHELFDIMPE-RN--V-VSWNIMISGYSKSG--------- 198 (523)
Q Consensus 142 ~~~~~~~~------~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~-~~--~-~~~~~li~~~~~~~--------- 198 (523)
..+|+... ..+...|...+..+. ..++.+.+..+|++... |. . ..|...... .+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHH
Confidence 56666543 235566777666543 24678888889888755 32 1 223322221 1111
Q ss_pred -----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--c--c---HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh
Q 038200 199 -----NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS--A--R---FNEGRSVHGYTVRTSLKPNIILDTALIDLYSK 266 (523)
Q Consensus 199 -----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 266 (523)
.+..|..+++.+...-...+...|...+.--... + + .+.+..+|++++... +.+..+|...+..+..
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1222333344333210001222343333322211 0 0 334566777777653 3456667777777777
Q ss_pred cCChHHHHHHHHhcCC-CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCCcCC---CHHHHHHHHHHHhh
Q 038200 267 CQKVEVAQRVFDSMAD-RNL-VCWNAMILGHCIHGKPEEGIKLFTALVNGTVA----GGSISP---DEITFIGVICACVR 337 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~p---~~~~~~~ll~~~~~ 337 (523)
.|+.+.|..+|++... |.. ..|. .|+...+.++. ++.+...-.. .++..+ ....|...+..+.+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 7888888888776532 322 2222 22222111221 2222221000 000011 12345555555556
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAM 416 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 416 (523)
.+..+.|..+|+++ +. ...+...|...+..-...+ +.+.|..+|+...+. .+.+...+...+......|+.+.
T Consensus 299 ~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~---~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK---HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77788888888888 32 1234444443333322223 588888888887753 22223445556666677788888
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 417 VERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 417 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
|..+++.+. .....|...+..-...|+.+.+..++++..+
T Consensus 373 aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888872 3556777777776777888888887777764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=73.66 Aligned_cols=97 Identities=6% Similarity=-0.043 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
..+..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44555666667777777777777776642 123456666666677777777777777777777777777777777777
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 038200 442 YAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 442 ~~~~g~~~~A~~~~~~m~~~ 461 (523)
|...|++++|...+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777766553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.8e-08 Score=77.41 Aligned_cols=109 Identities=7% Similarity=-0.097 Sum_probs=87.7
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|++.|+++... .+.+...
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~ 91 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRF 91 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchH
Confidence 353 456677778888999999999999998873 3446788888899999999999999999998753 1334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+..+..++...|++++|...+++++++.|+++...
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 77888889999999999999999999988877553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=71.27 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQF 437 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~ 437 (523)
+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+..|. ++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4566777888888899999999999887753 2335667778888889999999999999999999998 8899999
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCC
Q 038200 438 LLNVYAVA-GQWEDVARVRELMKKRR 462 (523)
Q Consensus 438 l~~~~~~~-g~~~~A~~~~~~m~~~~ 462 (523)
++.+|... |++++|.+.+++..+..
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999987654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.1e-07 Score=81.59 Aligned_cols=170 Identities=12% Similarity=-0.060 Sum_probs=119.8
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhcCC---CCh------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-
Q 038200 255 ILDTALIDLYSKCQKVEVAQRVFDSMAD---RNL------VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD- 324 (523)
Q Consensus 255 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~- 324 (523)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++........ ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--IDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--SCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--CchHH
Confidence 3444566677788888888888775432 111 234445666778889999999999987643110 1122
Q ss_pred -HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---CCCC
Q 038200 325 -EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-----FAHYWCMANLYAGAELTEEAEEILRKMPEDN---DNMS 395 (523)
Q Consensus 325 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~ 395 (523)
..+++.+...|...|++++|..+|+++.+.....|+ ..++..+...|...|++++|.+.+++..+.. ....
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 447888889999999999999999998732111222 2588889999999999999999998876321 0011
Q ss_pred chHHHHHHHHHHHHhcCCHHHH-HHHHHHHhh
Q 038200 396 FESIMWVSLLSLCRFQGAVAMV-ERLAKSFVD 426 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 426 (523)
.-..++..+...+...|++++| ...++++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1266788888899999999999 888888775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=79.00 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC--------------ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKP--------------NFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|...|++++|+..+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Confidence 344444555555666666666665554211111 1267888899999999999999999998853
Q ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 038200 393 NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVA-RVRELMKKR 461 (523)
Q Consensus 393 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 461 (523)
.+.+...+..+..++...|++++|...++++.+++|+++.++..+..++...|+.+++. ..+..|..+
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23457788888889999999999999999999999999999999999999998888877 556666443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-06 Score=77.69 Aligned_cols=208 Identities=11% Similarity=-0.049 Sum_probs=140.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH---HHHHHhhhhhhcCChHHHHHHHHhcCC
Q 038200 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNII---LDTALIDLYSKCQKVEVAQRVFDSMAD 282 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 282 (523)
.+..+......|+..+...+...+.-.-+ .+.......+.. .+...+..+...|++++|..++++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444443346777776666665543211 111111122222 223346678888999999999988654
Q ss_pred C-----C----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHH
Q 038200 283 R-----N----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFR 349 (523)
Q Consensus 283 ~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (523)
. + ...+..+...+...|++++|+..|++...... -.++ ..+++.+...|...|++++|..+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~----~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 179 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL----TGIDVYQNLYIENAIANIYAENGYLKKGIDLFE 179 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC----CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 1 11334566777788899999999999988431 1122 3368899999999999999999999
Q ss_pred HhhHhc----CCCC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CC-CCchHHHHHHHHHHHHhcCC-HHHHHHH
Q 038200 350 QMIDFY----KIKP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DN-MSFESIMWVSLLSLCRFQGA-VAMVERL 420 (523)
Q Consensus 350 ~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 420 (523)
++.+.. +..+ ...+|..+...|.+.|++++|.+.+++..+.. .+ ...-...+..+..++...|+ +++|...
T Consensus 180 ~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~ 259 (293)
T 3u3w_A 180 QILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 988521 1112 23478889999999999999999998876321 11 12226778888889999994 6999999
Q ss_pred HHHHhh
Q 038200 421 AKSFVD 426 (523)
Q Consensus 421 ~~~~~~ 426 (523)
++++..
T Consensus 260 ~~~Al~ 265 (293)
T 3u3w_A 260 YKKASF 265 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=73.02 Aligned_cols=96 Identities=9% Similarity=-0.124 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
.+..+...+.+.|++++|...++++.+. .+.+...|..+..++...|++++|...++++++++|+++.++..++.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4556777888999999999999998853 2335778888888899999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 038200 443 AVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~~ 461 (523)
...|++++|+..+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.3e-07 Score=68.87 Aligned_cols=111 Identities=11% Similarity=-0.038 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..+. .+.+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a 79 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 34555555666666666666666666552 2334555666666666666666666666665532 122345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.++...|++++|...++++.+.+|+++..+..+..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666666665555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=78.21 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH-HHcC
Q 038200 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL-YAGA 374 (523)
Q Consensus 296 ~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 374 (523)
...|++++|...+++..... +.+...+..+...|...|++++|...|+++.+. .+.+...+..+..+ +...
T Consensus 21 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQA 92 (177)
T ss_dssp C-----CCCCHHHHHHHHHC------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhc
Confidence 45677888888888887753 335677888888888889999999999888874 23456777778888 7788
Q ss_pred CCh--HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 375 ELT--EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 375 g~~--~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
|++ ++|...++++.+. .+.+...+..+...+...|++++|...++++.+..|+++..
T Consensus 93 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp TTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred CCcchHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 888 9999999888753 23346677778888889999999999999999999876543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-07 Score=72.08 Aligned_cols=99 Identities=7% Similarity=-0.072 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++++++.+|+++.++..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4666677777777777777777777776643 1234566667777777778888888888888888887777888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=75.89 Aligned_cols=106 Identities=11% Similarity=-0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+...|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++. .+.+...|..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 345555556666666666666666666653 2234555556666666666666666666665532 12234555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
..++...|++++|...++++++++|+++..+
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 5556666666666666666666666555433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-07 Score=70.69 Aligned_cols=114 Identities=11% Similarity=-0.139 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSL 404 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 404 (523)
...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.+++..+. .+.+...+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 345667777888899999999999998874 3446788888999999999999999999998853 23346778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC------CCChhhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMD------PQDFSRYQFLLNVYA 443 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 443 (523)
..++...|++++|...++++.+++ |.++.+...+..+..
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888999999999999999999988 877777776666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-07 Score=70.62 Aligned_cols=101 Identities=5% Similarity=-0.078 Sum_probs=90.5
Q ss_pred CCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 358 KPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
+.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|...++++.+..|.++.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 345778888999999999999999999998854 23367788888889999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 038200 438 LLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
++.+|...|++++|...+++..+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=75.89 Aligned_cols=194 Identities=6% Similarity=-0.100 Sum_probs=121.2
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcccHHHH-------HHHHHccCCchHHHHHHHHHHHhCCCCC---------------
Q 038200 64 NSCVPDQGVVFYLQMIKNGFMPNSYTFVSL-------FGSCAKTGCVERGGMCHGLALKNGVDFE--------------- 121 (523)
Q Consensus 64 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 121 (523)
..+++..|.+.|.+..+.. +-....|..+ ...+.+.++..++...+...++ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4677777777777777643 2233455544 2333333333444333333332 1111
Q ss_pred -------chHHHHHHHHHHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-C----hhHH
Q 038200 122 -------LPVMNSLINMYGCFGAMDCARNMFVQMSP--RDLISWNSIVSGHVRSGDMSAAHELFDIMPER-N----VVSW 187 (523)
Q Consensus 122 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~----~~~~ 187 (523)
......+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 12344566777788888888888888863 32225555556777888888888888766542 2 2356
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGN--DKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++..... +......|.+
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL~~ 249 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHHhC
Confidence 7778888888888888888888775433243 23556666778888888888888888888653 3555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.9e-07 Score=75.70 Aligned_cols=158 Identities=8% Similarity=-0.097 Sum_probs=97.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc---CCCC-ChHHHHHHHHHHH
Q 038200 297 IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFY---KIKP-NFAHYWCMANLYA 372 (523)
Q Consensus 297 ~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~ 372 (523)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...|.
T Consensus 4 ~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH------PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp ---CHHHHHHHHHHHHTS------TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 456677776644443331 12234566666667777777777777777665521 1111 2455666777777
Q ss_pred cCCChHHHHHHHHhCCCCC--CCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CC----hhhHHHHHHHH
Q 038200 373 GAELTEEAEEILRKMPEDN--DNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP--QD----FSRYQFLLNVY 442 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~ 442 (523)
..|++++|.+.+++..+.. .+..+ ....+..+...+...|++++|...++++.+..+ .+ ..++..++.+|
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 157 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA 157 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 7888888777777655320 01112 234566667778888888888888888876321 12 23467888888
Q ss_pred HhcCChhHHHHHHHHHHh
Q 038200 443 AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 443 ~~~g~~~~A~~~~~~m~~ 460 (523)
...|++++|...+++..+
T Consensus 158 ~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 158 QQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHH
Confidence 999999999888887765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-05 Score=67.60 Aligned_cols=176 Identities=8% Similarity=0.009 Sum_probs=127.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhc-C-
Q 038200 192 SGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKC-Q- 268 (523)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~- 268 (523)
....+.+..++|+++++.++..+ +-+...|+.--.++...| .+++++.+++.+..... -+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCC
Confidence 33445556678999999998853 234455666666666677 59999999999998753 3667777666666665 6
Q ss_pred ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhh
Q 038200 269 KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPE--------EGIKLFTALVNGTVAGGSISPDEITFIGVICACVR 337 (523)
Q Consensus 269 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~ 337 (523)
++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d------p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD------GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHh
Confidence 78999999999876 35567776665555555555 8999999999864 3466777777777777
Q ss_pred cCc-------HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh
Q 038200 338 AEL-------LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT 377 (523)
Q Consensus 338 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (523)
.+. ++++++.++++... .+-|...|+.+-..+.+.|+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence 665 68888888888873 445677887777777776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=73.83 Aligned_cols=106 Identities=9% Similarity=-0.056 Sum_probs=78.8
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+.+.|++++|...|+++.+. -+.++..|..+..+|...|++++|++.|+++.+. .+.+...
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l---~P~~~~~ 106 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL---GKNDYTP 106 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SSSCCHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CCCCcHH
Confidence 343 346666777778888888888888888773 3445777888888888888888888888887753 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..+..++...|++++|...|++++++.|+++
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 77777888888888888888888888888543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-07 Score=72.75 Aligned_cols=113 Identities=11% Similarity=-0.079 Sum_probs=90.6
Q ss_pred CCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHH
Q 038200 322 SPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIM 400 (523)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 400 (523)
.|+ ...+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|+..|++.... .+.+...
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 88 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRF 88 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHH
Confidence 343 345666777888999999999999999873 3446788888999999999999999999998853 2334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+..+..++...|++++|...+++++++.|+++.......
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 778888899999999999999999999998776554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.9e-07 Score=68.20 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
....+..+...+...|++++|.+.+++.... .+.+...+..+...+...|++++|...++++.+..|.++..+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3567778889999999999999999998853 2335778888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 038200 440 NVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+|...|++++|...+++..+.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999987653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-07 Score=76.51 Aligned_cols=149 Identities=7% Similarity=-0.005 Sum_probs=86.7
Q ss_pred hcCCHHHHHH---HHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccccHH
Q 038200 165 RSGDMSAAHE---LFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKS----GFR-GNDKTMASVLTACGRSARFN 236 (523)
Q Consensus 165 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~~~~~ 236 (523)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+. +.. .....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 444433334556677777777777777777777766551 111 12345666666777777777
Q ss_pred HHHHHHHHHHHc----CCCC--chHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCCh
Q 038200 237 EGRSVHGYTVRT----SLKP--NIILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKP 301 (523)
Q Consensus 237 ~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 301 (523)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+ .+ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777777766553 1111 234456666667777777777776665532 11 12345566666667777
Q ss_pred HHHHHHHHHHHh
Q 038200 302 EEGIKLFTALVN 313 (523)
Q Consensus 302 ~~a~~~~~~m~~ 313 (523)
++|...+++...
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.55 E-value=7.1e-07 Score=80.52 Aligned_cols=190 Identities=11% Similarity=0.042 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHH
Q 038200 218 NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILG 294 (523)
Q Consensus 218 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 294 (523)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|+..+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455566666667777777777777766653 22566677777777777777777777777654 345677778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDE-ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (523)
|...|++++|...|++..... |+. ..+...+....+ ...+.. +...... ....+......+...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-------KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-------HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHHH--
Confidence 888888888888888877632 321 011111111111 111111 2222222 4445555554444333
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhh
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQ-GAVAMVERLAKSFVD 426 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 426 (523)
.|++++|++.+++..+ ..|+ ......+...+... +.+++|.++|+++.+
T Consensus 148 ~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHE----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGT----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhc----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5888899988888875 3454 33333333334444 667888888888776
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=7.9e-07 Score=68.67 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|..+++++.+..|.++.++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 567888899999999999999999998853 23456788888889999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCC
Q 038200 441 VYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
+|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.5e-06 Score=74.40 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=158.6
Q ss_pred cccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC-ChHHHHHHHHhcCC---CChHHHHHHHHHHHhc-C-ChHHHH
Q 038200 232 SARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ-KVEVAQRVFDSMAD---RNLVCWNAMILGHCIH-G-KPEEGI 305 (523)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~a~ 305 (523)
.+..++|+++++.++..+. -+..+|+.--.++...| .+++++++++.+.. .+..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445689999999998753 35677777777777778 59999999999854 4667888877777776 7 899999
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHH--------HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC-
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLT--------EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL- 376 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 376 (523)
++++++.+.. +-|...|+.-.-.+.+.+.++ +++++++++.+. .+-|...|+....++.+.++
T Consensus 146 ~~~~k~L~~d------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 146 EYIHGSLLPD------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHTSSC------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 9999999854 345666666555555555555 899999999884 44577888888888888876
Q ss_pred ------hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhcC--
Q 038200 377 ------TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV--------------------AMVERLAKSFVDMD-- 428 (523)
Q Consensus 377 ------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-- 428 (523)
++++++.+++++.. .+-|...|+.+...+...|.. .........+....
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 68999999888853 344677777777666666543 33333333333322
Q ss_pred ----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 429 ----PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 429 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+.++.++..|+.+|...|+.++|.++++.+.++
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 457778999999999999999999999998653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-07 Score=72.87 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+.+.|++++|++.|++..+. .+.+...+..+..++...|++++|...++++++++|+++.+|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666666677777777777777776642 1224556666666677777777777777777777777777777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777766554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=70.86 Aligned_cols=130 Identities=11% Similarity=-0.058 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+. .+.+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 456777788888999999999999888853 335677888888888999999999999998874 344677888
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW--VSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
.+..++...|++++|.+.++++.+.. +.+...+ ......+...|++++|...++...+
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88899999999999999998887531 2233333 3334446777888888888887654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-05 Score=70.27 Aligned_cols=232 Identities=10% Similarity=0.076 Sum_probs=154.1
Q ss_pred HhcCCch-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcccc----------HHHHHHHHHHHHHcCCCCchHHHHHHhh
Q 038200 195 SKSGNPG-CSLKLFREMMKSGFRGND-KTMASVLTACGRSAR----------FNEGRSVHGYTVRTSLKPNIILDTALID 262 (523)
Q Consensus 195 ~~~~~~~-~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 262 (523)
.+.|.++ +|+.++..+... .|+. ..|+.--.++...+. ++++..+++.+..... -+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4555554 788888888875 3443 334433333333332 6788888888888653 36777776666
Q ss_pred hhhhcC--ChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh
Q 038200 263 LYSKCQ--KVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGK-PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336 (523)
Q Consensus 263 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 336 (523)
++...+ .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+.+++... +-|...|+.....+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~------p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHH
Confidence 666666 47899999988854 567788887777778888 589999999999864 335566665555544
Q ss_pred hc--------------CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-----------CChHHHHHHHHhCCCCC
Q 038200 337 RA--------------ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA-----------ELTEEAEEILRKMPEDN 391 (523)
Q Consensus 337 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 391 (523)
.. +.++++++.+...... .+-|...|+.+-..+.+. +.++++++.++++.+
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle-- 266 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE-- 266 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--
Confidence 43 4578889999988873 455677777666666655 456788888888775
Q ss_pred CCCCchHHHHHHHHH-----HHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 392 DNMSFESIMWVSLLS-----LCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 392 ~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
..||. .|..+.. +....|..++....+.++.+++|....-|..+...+
T Consensus 267 --~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 267 --LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp --HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred --hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 35553 2222111 112356677888888888888887666666655444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-07 Score=71.11 Aligned_cols=95 Identities=8% Similarity=-0.104 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-------hhH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF-------SRY 435 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~ 435 (523)
.+..+...+.+.|++++|++.|++.++. .+.+...|..+..+|...|++++|...++++++++|++. .+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4445566666666666666666665542 122345555566666666666666666666666555432 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..++.+|...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-06 Score=69.10 Aligned_cols=96 Identities=7% Similarity=-0.092 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...+...|++++|...++++.+..|+++..+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34444445555555555555555555443 1222 344444444555555555555555555555555555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 038200 437 FLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
.++.+|...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-06 Score=68.82 Aligned_cols=115 Identities=10% Similarity=-0.073 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESI 399 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 399 (523)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|.+.+++..+. .+.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHH
Confidence 456777888888889999999999998876 3454 677888888999999999999999988753 233567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
.+..+..++...|++++|...++++.+.+|+++.++..+..+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 778888889999999999999999999999888877777666543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=69.59 Aligned_cols=116 Identities=11% Similarity=-0.137 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
+.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++..+. .+.+...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHH
Confidence 345778888888999999999999999998874 3446788889999999999999999999998853 23356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCC-----ChhhHHHHHHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQ-----DFSRYQFLLNVY 442 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 442 (523)
..+..++...|++++|...++++.++.|+ +..+...+..+.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999998876 444555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=67.95 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+...+..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++++.+..|+++.++..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4667888899999999999999999998753 2335778888888999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 038200 440 NVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+|...|++++|...+++..+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999998775
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-06 Score=66.28 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMW 401 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 401 (523)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++......++ ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35666777777788888888888877763 23356777777888888888888888877766321111111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHH
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQF 437 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 437 (523)
..+..++...|++++|.+.++++++..| ++.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHHH
Confidence 6677778888888889888888888777 4544443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-06 Score=67.38 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=49.4
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---hhhHHHHHHHHH
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD---FSRYQFLLNVYA 443 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 443 (523)
+...+...|++++|.+.|+++.+...+.......+..+..++...|++++|...++++.+..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34445555555555555555543211111111344444555555566666666666666655555 445555666666
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..|++++|...++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=83.61 Aligned_cols=98 Identities=13% Similarity=-0.000 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...|..+..+|.+.|++++|+..++++++. .+.+...+..+..++...|++++|...|+++++++|++..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 467888999999999999999999998864 23357788888899999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHH-HHHHHHhC
Q 038200 441 VYAVAGQWEDVAR-VRELMKKR 461 (523)
Q Consensus 441 ~~~~~g~~~~A~~-~~~~m~~~ 461 (523)
++.+.|+++++.+ .++.|..+
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988764 45655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=69.71 Aligned_cols=64 Identities=5% Similarity=-0.124 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc-------CCCChhhH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDM-------DPQDFSRY----QFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 447888888888899999999999999988 99998899 99999999999999999999988664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-07 Score=69.68 Aligned_cols=88 Identities=16% Similarity=0.031 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.|++++|+..|++..+.+...+.+...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777777777777742110122355666777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 038200 454 VRELMKKR 461 (523)
Q Consensus 454 ~~~~m~~~ 461 (523)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=7e-07 Score=87.06 Aligned_cols=121 Identities=14% Similarity=-0.004 Sum_probs=99.0
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF 410 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 410 (523)
+...+.+.|++++|.+.|+++.+. .+.+...|..+..+|.+.|++++|++.+++..+. .+.+...+..+..++..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 334566789999999999999884 3445888999999999999999999999998864 23357788888889999
Q ss_pred cCCHHHHHHHHHHHhhcCCCChhhHHHHHHH--HHhcCChhHHHHHHH
Q 038200 411 QGAVAMVERLAKSFVDMDPQDFSRYQFLLNV--YAVAGQWEDVARVRE 456 (523)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 456 (523)
.|++++|...++++.+.+|+++.++..++.+ +.+.|++++|++.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988888888888 888999999999988
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=67.78 Aligned_cols=116 Identities=6% Similarity=-0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch----HHHH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE----SIMW 401 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 401 (523)
..+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|...++++........++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45566667777777888888877777763 33456677777777777888888888777766421101111 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 7777778888888888888888888777 56666666555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-06 Score=78.68 Aligned_cols=147 Identities=7% Similarity=-0.015 Sum_probs=116.4
Q ss_pred CChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----------------HHHH
Q 038200 268 QKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----------------EITF 328 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----------------~~~~ 328 (523)
+++++|...|+...+ .+...+..+...|...|++++|+..|++.+... |+ ...+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-------p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-------EYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------TTCCCCCSHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-------hccccCChHHHHHHHHHHHHHH
Confidence 445555555554432 245678888999999999999999999999853 54 3788
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (523)
..+..++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++.+. .+.+...+..+...+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHH
Confidence 99999999999999999999999984 3457889999999999999999999999999863 233566777888888
Q ss_pred HhcCCHHHH-HHHHHHHhh
Q 038200 409 RFQGAVAMV-ERLAKSFVD 426 (523)
Q Consensus 409 ~~~g~~~~a-~~~~~~~~~ 426 (523)
...|+.++| ...++.+.+
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 889998888 446666553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.2e-06 Score=83.48 Aligned_cols=121 Identities=7% Similarity=-0.049 Sum_probs=85.0
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
+..+...+.+.|++++|++.|++..+ .+...|..+..+|...|++++|+..+++..+.. +.+...+..+..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~lg~ 82 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKYIKGYYRRAA 82 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence 44456677788888888888887643 456788888888888888888888888888853 234667778888
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH--HHcCCChHHHHHHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL--YAGAELTEEAEEILR 385 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 385 (523)
+|...|++++|.+.|+++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888888774 22234455555555 777788888888887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.4e-06 Score=63.39 Aligned_cols=111 Identities=8% Similarity=0.032 Sum_probs=83.3
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCCh---HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNF---AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLL 405 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 405 (523)
..+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...++++.............+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 34556777889999999999998874 22233 57778888999999999999999988753211111156677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.++...|++++|...++++.+..|+++........+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 889999999999999999999999877655544433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-06 Score=64.64 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHH
Q 038200 325 EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWV 402 (523)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 402 (523)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++..+. .+. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV---IEDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---SCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccchHHHHH
Confidence 445666777788888999999999888874 3446777888888888999999999999888753 223 467778
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHhhcCCCCh
Q 038200 403 SLLSLCRFQ-GAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 403 ~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.+...+... |++++|.+.++++.+..|+++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888889 999999999999998888653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=6.5e-07 Score=76.09 Aligned_cols=150 Identities=11% Similarity=0.044 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHhhccCCchhHHHHhccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc---------
Q 038200 20 NSFWTINLLKHSADFGSPDYTVLVFKCINN---PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNS--------- 87 (523)
Q Consensus 20 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------- 87 (523)
.+...+.........|+++.+.+.|+.... .....+..+...+.+.|++++|+..|++..+.. +.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 81 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLD 81 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHH
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHH
Confidence 344556666677778889999988875432 244567788889999999999999999998753 1122
Q ss_pred -------ccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHH
Q 038200 88 -------YTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWN 157 (523)
Q Consensus 88 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 157 (523)
..+..+..++...|++++|...++..++..+. +...+..+..+|...|++++|.+.|++.. +.+...+.
T Consensus 82 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 82 KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 56666777777778888888888877776433 56667777777777777777777776653 22334444
Q ss_pred HHHHHHHhcCCHHH
Q 038200 158 SIVSGHVRSGDMSA 171 (523)
Q Consensus 158 ~ll~~~~~~~~~~~ 171 (523)
.+...+...++.++
T Consensus 161 ~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 161 SYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=67.01 Aligned_cols=99 Identities=10% Similarity=-0.000 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC-------hh
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD-------FS 433 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~ 433 (523)
...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...++++.+..|.+ +.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 456778889999999999999999998853 23457778888889999999999999999999987765 78
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 434 RYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
++..++.+|...|++++|.+.+++..+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 89999999999999999999999997753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-05 Score=77.24 Aligned_cols=194 Identities=7% Similarity=-0.040 Sum_probs=112.3
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC-Cc--
Q 038200 193 GYSKSGNPGCSLKLFREMMKSGFRGN----------------DKTMASVLTACGRSARFNEGRSVHGYTVRTSLK-PN-- 253 (523)
Q Consensus 193 ~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 253 (523)
.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+.-.. ++
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 44556666666666666655321110 013555666667777777777666665542111 11
Q ss_pred --hHHHHHHhhhhhhcCChHHHHHHHHhcCC--------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcC
Q 038200 254 --IILDTALIDLYSKCQKVEVAQRVFDSMAD--------R-NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSIS 322 (523)
Q Consensus 254 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 322 (523)
..+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++...-.... -.
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~ 171 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DK 171 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CS
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cc
Confidence 12233344444556677777776665422 1 134667777888888888888888877655321000 11
Q ss_pred CC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcC-CC-C-C--hHHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 323 PD-EITFIGVICACVRAELLTEGRKYFRQMIDFYK-IK-P-N--FAHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 323 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
+. ..++..++..|...|++++|..++++...... +. | . ...+..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 34677777888888888888888887654311 11 1 1 245566667777788888887766555
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.9e-06 Score=79.21 Aligned_cols=200 Identities=7% Similarity=-0.077 Sum_probs=142.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCc----------------hHHHHHHhhhhhhcCChHHHHHHHHhcCC-----CC
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPN----------------IILDTALIDLYSKCQKVEVAQRVFDSMAD-----RN 284 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~ 284 (523)
...+.+.|++++|.+.|..+.+...... ...+..++..|...|++++|.+++..+.+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999988643221 12467789999999999999999988754 11
Q ss_pred h----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC
Q 038200 285 L----VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP 359 (523)
Q Consensus 285 ~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 359 (523)
. ...+.+...+...|+++.|..++++......... ..+ ...++..+...+...|++++|..+++.+.....-..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 2334444455667899999999888764210000 222 356788889999999999999999998876422111
Q ss_pred ----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 360 ----NFAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 360 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
....+..++..|...|++++|..++++...... ..++. ...+..+...+...|++++|...+..+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 256788899999999999999999987653211 11222 34555666677888999999998888765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=4.2e-06 Score=67.91 Aligned_cols=135 Identities=13% Similarity=-0.034 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC--CCCc-hH
Q 038200 326 ITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMPEDND--NMSF-ES 398 (523)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~-~~ 398 (523)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++..+... +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35566666777777777777777776653111111 24667778888888888888888877653210 0111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------CChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDP------QDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..+..+...+...|++++|...++++.+..+ ....++..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777788899999999999999887422 1245788899999999999999999998765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-06 Score=78.01 Aligned_cols=140 Identities=10% Similarity=-0.132 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHH
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYW 365 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 365 (523)
..+..+...+.+.|++++|+..|++.++. .+... .... .+...+ ..+.+...|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-------~~~~~----------~~~~-------~~~~~~--~~~~~~~~~~ 277 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY-------VEGSR----------AAAE-------DADGAK--LQPVALSCVL 277 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HHHHH----------HHSC-------HHHHGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------hhcCc----------cccC-------hHHHHH--HHHHHHHHHH
Confidence 35666666777777777777777776662 12110 0000 111111 0112467888
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.+..+|.+.|++++|++.++++++. .+.+...+..+..++...|++++|...++++.+++|++..++..+..++...
T Consensus 278 nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 278 NIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999864 2335778888888999999999999999999999999999999999999998
Q ss_pred CChhHHHHH
Q 038200 446 GQWEDVARV 454 (523)
Q Consensus 446 g~~~~A~~~ 454 (523)
++.+++.+.
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888877653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=69.18 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 398 SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 398 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...+..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3455666666777777777777777777777777777777777777777777777777766554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=65.53 Aligned_cols=100 Identities=10% Similarity=-0.067 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHH
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLL 405 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 405 (523)
.+..+...+.+.|++++|...|+++.+. .+.+...|..+..++...|++++|+..+++..+. .| +...+..+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----~P~~~~~~~~la 92 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALA 92 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHH
Confidence 3455667788899999999999999873 3446788888999999999999999999998853 44 466777888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.++...|++++|...++++++.+|++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 889999999999999999999888653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-06 Score=69.68 Aligned_cols=114 Identities=12% Similarity=-0.024 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHhhHhcC----------------CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCC
Q 038200 327 TFIGVICACVRAELLTEGRKYFRQMIDFYK----------------IKPNFAHYWCMANLYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 390 (523)
.+......+.+.|++++|...|++..+... .+.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 445555566666666666666666655200 1123467888999999999999999999998853
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHH
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF-SRYQFLLNVYA 443 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~ 443 (523)
.+.+...+..+..++...|++++|...++++++++|+++ .+...+..+..
T Consensus 93 ---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 93 ---EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp ---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 233577888888899999999999999999999999887 44555544433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-06 Score=79.66 Aligned_cols=149 Identities=8% Similarity=-0.108 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHH
Q 038200 285 LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHY 364 (523)
Q Consensus 285 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 364 (523)
...+..+...+...|++++|...|++.+. ..|+... +...++.+++...+ . ...|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-------~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-------YMGDDFM-------FQLYGKYQDMALAV---K--------NPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-------HSCHHHH-------HTCCHHHHHHHHHH---H--------THHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------Hhccchh-------hhhcccHHHHHHHH---H--------HHHH
Confidence 45677777778888888888888888877 6666542 22333444333221 1 1367
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH-
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA- 443 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~- 443 (523)
..+..+|.+.|++++|+..+++.++. .+.+...+..+..++...|++++|...++++++++|+++.++..|..+..
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 77888888888888888888887753 23356677778888888888888888888888888888888888777743
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038200 444 VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~ 461 (523)
..+..+++...|++|...
T Consensus 311 ~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 456677777788777554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00017 Score=65.51 Aligned_cols=213 Identities=8% Similarity=0.010 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC----------hHHHHHHHHhcCC---CChHHHHHHHHHHHhcC--C
Q 038200 236 NEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK----------VEVAQRVFDSMAD---RNLVCWNAMILGHCIHG--K 300 (523)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 300 (523)
++|..+++.+...++. +..+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+...+ .
T Consensus 47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 4677888877775422 34445433333322222 4566666666643 45667776666666666 3
Q ss_pred hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc-HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC-----
Q 038200 301 PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL-LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA----- 374 (523)
Q Consensus 301 ~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 374 (523)
+++++.++.++.+.. +-|...|+.-...+...|. ++++++.++++.+. .+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 126 WARELELCARFLEAD------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccc
Confidence 678888888887753 3355566655555566666 57777777777773 334556666555554443
Q ss_pred ---------CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhcCCCChhh
Q 038200 375 ---------ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ-----------GAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 375 ---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
+.++++++.+.+.... .+-|...|+-+-..+... +.++++.+.++++.+++|++.-+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 3466677777766642 233455555444433333 34667777777777777766443
Q ss_pred HHHHHHHH---HhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVY---AVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~---~~~g~~~~A~~~~~~m~~ 460 (523)
+..++... ...|..+++...+.++++
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 33332221 123444455555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-06 Score=67.25 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=71.6
Q ss_pred hcCcHHHHHHHHHHhhHhcC--CCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH
Q 038200 337 RAELLTEGRKYFRQMIDFYK--IKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV 414 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 414 (523)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.++++.+. .+.+...+..+..++...|++
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCH
Confidence 357788888888888763 2 1334677888888999999999999999988853 233466777788889999999
Q ss_pred HHHHHHHHHHhhcCCCChhhHH
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
++|...++++++..|+++....
T Consensus 78 ~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 78 EQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999888776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.1e-06 Score=76.53 Aligned_cols=153 Identities=10% Similarity=-0.021 Sum_probs=86.2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHH
Q 038200 254 IILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVIC 333 (523)
Q Consensus 254 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~ 333 (523)
...+..+...+.+.|++++|+..|++....+.... .+...++..++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~---------------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK---------------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH---------------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH---------------HHHHHHHHH
Confidence 45677888899999999999999998765322211 1223334444332221 126778888
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHH-HHhc
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSL-CRFQ 411 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~ 411 (523)
++.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++.+ +.|+ ...+..+... ....
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~----l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK----YAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999884 344688899999999999999999999999986 3454 3444444444 3445
Q ss_pred CCHHHHHHHHHHHhhcCCCCh
Q 038200 412 GAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~ 432 (523)
+..+.+...++++.+..|.++
T Consensus 313 ~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhCCCCCCC
Confidence 678888999999999888654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-05 Score=73.73 Aligned_cols=170 Identities=11% Similarity=-0.016 Sum_probs=132.9
Q ss_pred hHHHHHHHHhcCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh
Q 038200 270 VEVAQRVFDSMAD---RNLVCWNAMILGHCIHGK----------PEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV 336 (523)
Q Consensus 270 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~ 336 (523)
.++|++.++++.. .+..+|+.--.++...|+ ++++++.++++.... +-+..+|..-..++.
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------PKSYGTWHHRCWLLS 118 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 4566777777643 345567666666666666 899999999999854 335667877777788
Q ss_pred hcC--cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC-ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc--
Q 038200 337 RAE--LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE-LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ-- 411 (523)
Q Consensus 337 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 411 (523)
+.+ +++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++.+. .+-+...|+.....+...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT---TCCCHHHHHHHHHHHHHHSC
T ss_pred HcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH---CCCCccHHHHHHHHHHhhcc
Confidence 888 779999999999984 3446788888788888888 899999999999864 344677777777766553
Q ss_pred ------------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhH
Q 038200 412 ------------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWED 450 (523)
Q Consensus 412 ------------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 450 (523)
+.++++.+.+++++..+|++..+|..+..++.+.+++++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.5e-07 Score=67.04 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC------hh
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD------FS 433 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~ 433 (523)
+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++++++++|++ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4567778888899999999999999988753 23356778888888999999999999999999999987 77
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 038200 434 RYQFLLNVYAVAGQWEDVARVREL 457 (523)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~ 457 (523)
++..++.++...|++++|...+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888888877665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=63.90 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-
Q 038200 286 VCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN- 360 (523)
Q Consensus 286 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 360 (523)
.++..+...+...|++++|...+++...... -.++ ..++..+...+...|++++|...+++..+...-.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK----EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 3567777788888899999888888776320 0011 146777888899999999999999987763211111
Q ss_pred ---hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 361 ---FAHYWCMANLYAGAELTEEAEEILRKMPEDN--DNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 361 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
...+..+...+...|++++|.+.+++..+.. .+..+ ....+..+...+...|++++|...++++.++.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4567788889999999999999998876321 01111 24566777778999999999999999988753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=77.48 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=102.1
Q ss_pred HHhhcCcHHHHHHHHHHhhHhcC--CC---C-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHH
Q 038200 334 ACVRAELLTEGRKYFRQMIDFYK--IK---P-NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMW 401 (523)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~ 401 (523)
.+..+|++++|+.++++..+... +. | ...+++.|..+|...|++++|..++++.++. +. ..|+ ..++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l 396 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH-NNAQLGMAV 396 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT-TCHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 35578999999999988766421 11 2 2567899999999999999999888776422 22 2343 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCC
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDFS---RYQFLLNVYAVAGQWEDVARVRELMKKRRMGRMP 467 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 467 (523)
+.|...|..+|++++|+.+++++++ ++|++|. +...|..++...|++++|..++.+++++.....|
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999986 5777655 4557888888999999999999999886543333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.11 E-value=6.6e-06 Score=65.43 Aligned_cols=112 Identities=15% Similarity=0.011 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-----C-----hHHHHHHHHHHHcCCChHHHHHHHHhCCCC---CCCC
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKP-----N-----FAHYWCMANLYAGAELTEEAEEILRKMPED---NDNM 394 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 394 (523)
+......+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++.++. ...+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34444556666777777777776665311100 1 237888888888889988888888887741 0001
Q ss_pred Cch-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 395 SFE-SIMW----VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 395 ~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
.|+ ...| .....++...|++++|...|+++++++|++..++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 564 5677 88888999999999999999999999998776655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=57.00 Aligned_cols=83 Identities=20% Similarity=0.168 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|...++++.+.+|+++.++..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 456667777777888888888888777643 12345667777778888888888888888888888888888888888
Q ss_pred HHHhcC
Q 038200 441 VYAVAG 446 (523)
Q Consensus 441 ~~~~~g 446 (523)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.6e-05 Score=60.45 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 379 EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 379 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
+|++.+++..+. .+.+...+..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ---GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT---TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666643 23356677777778888888888888888888888888888888888888888888888888877
Q ss_pred HhC
Q 038200 459 KKR 461 (523)
Q Consensus 459 ~~~ 461 (523)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=57.26 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+...+..+...+...|++++|...++++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356778888889999999999999999999999999999999999999999999999999988664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2.9e-05 Score=72.74 Aligned_cols=65 Identities=3% Similarity=-0.112 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+..+..++...|++++|...++++++++|+++.++..++.+|...|++++|+..+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46778888889999999999999999999999999999999999999999999999999998775
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=6.8e-05 Score=72.63 Aligned_cols=145 Identities=9% Similarity=-0.004 Sum_probs=110.8
Q ss_pred cCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC----------------HHH
Q 038200 267 CQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD----------------EIT 327 (523)
Q Consensus 267 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~----------------~~~ 327 (523)
.+++++|...|+...+ .....|..+...|.+.|++++|+..|++.+.. .|+ ...
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-------~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-------LEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------hcccccCChHHHHHHHHHHHHH
Confidence 3445555555544332 23457888889999999999999999999884 343 478
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLS 406 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~ 406 (523)
|..+..+|.+.|++++|+..++++.+. .+.+...|..+..+|...|++++|...|+++.+. .| +...+..+..
T Consensus 320 ~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l----~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 320 FLNLAMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV----NPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----C----CHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHH
Confidence 889999999999999999999999984 3456888999999999999999999999999863 44 4556677777
Q ss_pred HHHhcCCHHHHHH-HHHHH
Q 038200 407 LCRFQGAVAMVER-LAKSF 424 (523)
Q Consensus 407 ~~~~~g~~~~a~~-~~~~~ 424 (523)
++...++.+++.+ .++.+
T Consensus 394 ~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7888888777654 34443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=52.63 Aligned_cols=70 Identities=7% Similarity=0.075 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRMG 464 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 464 (523)
+.++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566777777777654544 799999999999999999999999999999999999999999999887544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=63.63 Aligned_cols=84 Identities=7% Similarity=-0.031 Sum_probs=59.1
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGA----------VAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
+.+++|.+.+++..+. -+.+...|..+..++...++ +++|+..|+++++++|++..+|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455555555555532 12234444444444444443 5699999999999999999999999999988
Q ss_pred cC-----------ChhHHHHHHHHHHhC
Q 038200 445 AG-----------QWEDVARVRELMKKR 461 (523)
Q Consensus 445 ~g-----------~~~~A~~~~~~m~~~ 461 (523)
.| ++++|++.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 788999998888664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=54.10 Aligned_cols=67 Identities=9% Similarity=-0.051 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 396 FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
++...+..+...+...|++++|...++++++.+|+++.++..++.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456778888899999999999999999999999999999999999999999999999999997653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00047 Score=54.16 Aligned_cols=112 Identities=8% Similarity=-0.064 Sum_probs=89.0
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCH
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAV 414 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 414 (523)
+++++|.++|++..+. + .|... |...|...+.+++|.++|++..+. -+......+...|.. .++.
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccH
Confidence 5678899999988885 4 33332 777788888888899999988843 345566677777777 7899
Q ss_pred HHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 415 AMVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 415 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
++|..+++++.+. .++.++..|+.+|.. .+++++|...|++..+.|.
T Consensus 78 ~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 78 RKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999998876 467889999999998 8999999999999888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00097 Score=66.17 Aligned_cols=152 Identities=9% Similarity=0.025 Sum_probs=121.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCc----------HHHHHHHHHHhhHhcCCCCChHHHHH
Q 038200 298 HGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAEL----------LTEGRKYFRQMIDFYKIKPNFAHYWC 366 (523)
Q Consensus 298 ~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ 366 (523)
....++|++.+++++.. .|+ ...|+.--.++...|+ +++++..++.+.+. .+-+..+|..
T Consensus 42 ~~~~eeal~~~~~~l~~-------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~h 112 (567)
T 1dce_A 42 GELDESVLELTSQILGA-------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHH 112 (567)
T ss_dssp TCCSHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 34567889999999994 465 4456555555555555 89999999999984 4456788888
Q ss_pred HHHHHHcCC--ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 367 MANLYAGAE--LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG-AVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 367 l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
-..++.+.| +++++++.++++.+. -+-+...|+.-.......| .++++.+.++++++.+|.+..+|...+.++.
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~ 189 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP 189 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Confidence 888888999 779999999999964 2446778888887888888 8999999999999999999999999999988
Q ss_pred hc--------------CChhHHHHHHHHHHhC
Q 038200 444 VA--------------GQWEDVARVRELMKKR 461 (523)
Q Consensus 444 ~~--------------g~~~~A~~~~~~m~~~ 461 (523)
+. ++++++++.+++....
T Consensus 190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 74 5567888888777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00014 Score=55.04 Aligned_cols=83 Identities=18% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 343 EGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
.|...|++..+ ..+.+...+..+...|...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666777665 23446777888888888888888888888888753 23346677777888888899999999998
Q ss_pred HHhhcCCC
Q 038200 423 SFVDMDPQ 430 (523)
Q Consensus 423 ~~~~~~p~ 430 (523)
++.+..|.
T Consensus 78 ~al~~~~~ 85 (115)
T 2kat_A 78 SGLAAAQS 85 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 88887763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0002 Score=69.36 Aligned_cols=133 Identities=11% Similarity=-0.122 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhc----C-CCC-ChHHH
Q 038200 293 LGHCIHGKPEEGIKLFTALVNGTVAG-GSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFY----K-IKP-NFAHY 364 (523)
Q Consensus 293 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~ 364 (523)
..+...|++++|+.++++..+....- +.-.|+ ..+++.|..+|...|++++|..++++..+.+ | ..| ...++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999999998876532100 011232 4578899999999999999999998876531 1 122 25678
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+.|...|...|++++|+.++++..+. +. -.|+ ..+...+..++...+.+++|+..+.++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP-SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988876522 22 2344 34445555677888999999999999876
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00033 Score=50.08 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+..+...+...|++++|...++++.+..|+++.++..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45677788888999999999999999999999999999999999999999999999999998775
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.61 E-value=6e-05 Score=55.28 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=35.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 406 SLCRFQGAVAMVERLAKSFVDMDPQDFS-RYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..+...|++++|...++++++.+|+++. .+..++.+|...|++++|...|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566666666666666666666666 6666666666666666666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=7.2e-05 Score=59.33 Aligned_cols=113 Identities=10% Similarity=-0.003 Sum_probs=75.5
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC----------hHHHHHHHHhCCCCCCCCCc-hHHHHHHHH
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL----------TEEAEEILRKMPEDNDNMSF-ESIMWVSLL 405 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~ 405 (523)
+.+.+++|.+.++...+. -+.+...|..+..++...++ +++|+..|++.++ +.| +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~----ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH----hCcCcHHHHHHHH
Confidence 445667777777777763 33456677767777776655 3588888888875 344 466777788
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 406 SLCRFQ-----------GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 406 ~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+|... |++++|...|+++++++|++. .|...+.. .++|-++.-.+...+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCcccccc
Confidence 887766 489999999999999999875 33322222 234555555554443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.56 E-value=6.3e-06 Score=76.43 Aligned_cols=259 Identities=12% Similarity=0.089 Sum_probs=179.2
Q ss_pred HhhccCCchhHHHHhcc-CC---C--------CCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 038200 30 HSADFGSPDYTVLVFKC-IN---N--------PGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSC 97 (523)
Q Consensus 30 ~~~~~g~~~~A~~~~~~-~~---~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 97 (523)
.|.|.+...+|.+++-+ +. + .....|..|..+....+...+|++.|- + .-|+..|..++.++
T Consensus 20 iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A 93 (624)
T 3lvg_A 20 HMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAA 93 (624)
T ss_dssp -------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHT
T ss_pred HHHhccCcHHHHHHHHHhccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHH
Confidence 45555555566655422 21 0 234578899999999999999887653 2 23666789999999
Q ss_pred HccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHh
Q 038200 98 AKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFD 177 (523)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 177 (523)
.+.|.+++-..++....+..- ++.+=+.|+-+|++.++..+-++++. .|+......+..-|...|.++.|.-+|.
T Consensus 94 ~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 94 NTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp TTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 999999999998887766532 55566789999999998765443322 4777778888888999999999988888
Q ss_pred cCCC------------------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc
Q 038200 178 IMPE------------------------RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA 233 (523)
Q Consensus 178 ~~~~------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 233 (523)
.+.. .++.||-.+-.+|...+.+.-|.-+--.++-. || ....++.-|...|
T Consensus 169 ~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 169 NVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp GSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 7752 47789999999999999988775544333321 22 2334566788888
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC----C-------ChHHHHHHHHHHHhcCChH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD----R-------NLVCWNAMILGHCIHGKPE 302 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~ 302 (523)
.+++-+.+++...... .....+|+-|.-.|++- ++++..+.++..-. | ....|.-++-.|++-.+++
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~D 321 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 321 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHH
Confidence 8888888888766432 34677888888888774 55666665554322 2 3456888888888888888
Q ss_pred HHHH
Q 038200 303 EGIK 306 (523)
Q Consensus 303 ~a~~ 306 (523)
.|..
T Consensus 322 nA~l 325 (624)
T 3lvg_A 322 NAII 325 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0016 Score=51.07 Aligned_cols=110 Identities=5% Similarity=-0.059 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----cCChHHH
Q 038200 198 GNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----CQKVEVA 273 (523)
Q Consensus 198 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 273 (523)
+++++|+.+|++..+.| .|+.. +...|...+..++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45778888888888876 33433 6666777777888888888888865 56667777777777 6788888
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 038200 274 QRVFDSMAD-RNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 315 (523)
...|++..+ .+...+..|...|.. .++.++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888754 466777778888877 788888888888888766
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=66.16 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=67.2
Q ss_pred cCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hhHHHH
Q 038200 373 GAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDF---SRYQFL 438 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l 438 (523)
..|++++|+.++++.++. +. ..|+ ..+++.+..+|...|++++|+.+++++++ ++|++| .+++.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFED-SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccCh-hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 346777777777664321 11 2233 57888899999999999999999999986 456554 468899
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 038200 439 LNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+.+|..+|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999998755
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.001 Score=63.27 Aligned_cols=93 Identities=6% Similarity=-0.003 Sum_probs=72.2
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCC-CC---c-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCCh---hh
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDN-MS---F-ESIMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDF---SR 434 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 434 (523)
+..+.+.|++++|++++++..+.... +. | ...+++.+..+|...|++++|+.+++++++ .+|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778999999988876543211 12 2 256788888899999999999999999886 455554 46
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 435 YQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
++.|+.+|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00024 Score=52.20 Aligned_cols=67 Identities=7% Similarity=-0.050 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 429 (523)
++..+..+..+|...|++++|++.|+++.+.. +.+...|..+..++...|++++|...+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 44555566666666666666666666665421 22344555566666666666666666666665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=48.19 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=58.7
Q ss_pred HHHHHHcCCChHHHHHHHHhCCCCCCCCCchHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 367 MANLYAGAELTEEAEEILRKMPEDNDNMSFESI-MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 367 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
....+...|++++|.+.++++.+. .+.+.. .+..+..++...|++++|...++++++++|+++.++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 456677888889999888888753 233456 77777888888999999999999999999988776632
Q ss_pred CChhHHHHHHHHH
Q 038200 446 GQWEDVARVRELM 458 (523)
Q Consensus 446 g~~~~A~~~~~~m 458 (523)
+.+.++...+++.
T Consensus 75 ~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 KMVMDILNFYNKD 87 (99)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.015 Score=53.12 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHH--hcC---ChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhh----c----CcHHHHHHHH
Q 038200 283 RNLVCWNAMILGHC--IHG---KPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVR----A----ELLTEGRKYF 348 (523)
Q Consensus 283 ~~~~~~~~li~~~~--~~g---~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~----~----~~~~~a~~~~ 348 (523)
.+...|...+.+.. ..+ ...+|..+|++.++ ..|+ ...+..+..++.. . .........+
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-------lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-------SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 45666666665533 222 35788889999988 4576 3444444433321 0 0011111111
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD 428 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 428 (523)
+........+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+...|+.++|.+.++++..++
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111110022334555555555555456666666666665532 3444444444445555566666666666666666
Q ss_pred CC
Q 038200 429 PQ 430 (523)
Q Consensus 429 p~ 430 (523)
|.
T Consensus 341 P~ 342 (372)
T 3ly7_A 341 PG 342 (372)
T ss_dssp CS
T ss_pred CC
Confidence 63
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.003 Score=60.00 Aligned_cols=98 Identities=12% Similarity=-0.041 Sum_probs=74.4
Q ss_pred hcCcHHHHHHHHHHhhHhc--CCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-HHHHHHH
Q 038200 337 RAELLTEGRKYFRQMIDFY--KIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-SIMWVSL 404 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~~l 404 (523)
..|++++|..++++..+.. -+.| ...+++.|..+|...|++++|+.+++++++. +. ..|+ ..+++.+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 4578899999888876531 1222 2467889999999999999999988876532 22 2444 6788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh-----cCCCChhhH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVD-----MDPQDFSRY 435 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 435 (523)
...|..+|++++|+.+++++.+ ++|++|.+-
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999987 578777543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.057 Score=40.66 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=106.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+.-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+.|.+. .+
T Consensus 17 ~ildG~v~qGveii~k~~~s--------sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C 74 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS--------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KC 74 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GC
T ss_pred HHHhhhHHHHHHHHHHHcCC--------CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hh
Confidence 45678899999999988774 355667777777777777788888888887754333 35
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
|++......+-.+-. +...+...+.....+|+-+.-..++..+...++.+|+....++.+|.+.|+..+|.++
T Consensus 75 ~NlKrVi~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 75 QNLKSVVECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp SCTHHHHHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 555555555555542 1234455667788899999999999997666666899999999999999999999999
Q ss_pred HHHHHhCCCcc
Q 038200 455 RELMKKRRMGR 465 (523)
Q Consensus 455 ~~~m~~~~~~~ 465 (523)
+.+.-++|++.
T Consensus 148 l~~AC~kG~kE 158 (172)
T 1wy6_A 148 LIEACKKGEKE 158 (172)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHhhhHH
Confidence 99999998753
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0031 Score=60.04 Aligned_cols=105 Identities=11% Similarity=-0.043 Sum_probs=78.8
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHhc--CCCC----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCC-----CCCCCch-H
Q 038200 331 VICACVRAELLTEGRKYFRQMIDFY--KIKP----NFAHYWCMANLYAGAELTEEAEEILRKMPED-----NDNMSFE-S 398 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~ 398 (523)
.+..+.+.|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++++. +. ..|+ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHH
Confidence 3455667889999999998887531 1222 2567888999999999999999888876522 22 2343 6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCChhhHH
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVD-----MDPQDFSRYQ 436 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 436 (523)
.+++.+...|..+|++++|+.+++++.+ ++|++|.+-.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 7788899999999999999999999987 5788775544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.03 Score=58.50 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=20.2
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTAL 311 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 311 (523)
..|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444443332 2344444555555555555555554443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0094 Score=46.66 Aligned_cols=93 Identities=11% Similarity=-0.036 Sum_probs=71.7
Q ss_pred CcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCC
Q 038200 339 ELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE---LTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGA 413 (523)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 413 (523)
.....+.+.|.+..+. + .++..+...+..++++++ +.++++.++++..+. ..| ....+..+.-++.+.|+
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCccchHHHHHHHHHHHHHccC
Confidence 3445666777766663 3 378888888999999988 666999999998854 135 35566667778999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHH
Q 038200 414 VAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 414 ~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
+++|.++++.+++.+|++..+..
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999998875444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.19 Score=52.38 Aligned_cols=151 Identities=9% Similarity=0.025 Sum_probs=93.5
Q ss_pred HccCCchHHHH-HHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 98 AKTGCVERGGM-CHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 98 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
...+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.- ..-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHH
Confidence 34567777655 43111 11223366777777788888887766421 11233456678888888888
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHH
Q 038200 177 DIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIIL 256 (523)
Q Consensus 177 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 256 (523)
+.+. +...|..+...+.+.++++.|.++|.++.+ |..+...+...|+.+....+-+.....|.
T Consensus 676 ~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------ 738 (814)
T 3mkq_A 676 TDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------ 738 (814)
T ss_dssp TTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------
T ss_pred HhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------
Confidence 7764 567889999999999999999998887643 33444445556666665555555544431
Q ss_pred HHHHhhhhhhcCChHHHHHHHHh
Q 038200 257 DTALIDLYSKCQKVEVAQRVFDS 279 (523)
Q Consensus 257 ~~~l~~~~~~~~~~~~a~~~~~~ 279 (523)
++....+|.+.|++++|+++|.+
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHH
Confidence 22333445566777777666544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.018 Score=52.50 Aligned_cols=133 Identities=13% Similarity=0.094 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHh--hc---CcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHH----cCCC----h---HHHHHHH
Q 038200 322 SPDEITFIGVICACV--RA---ELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYA----GAEL----T---EEAEEIL 384 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~g~----~---~~A~~~~ 384 (523)
+.+...|...+++.. .. ....+|..+|+++.+. .|+ ...|..+..+|. ..+. . ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 445666777766543 22 3468999999999984 454 445554444442 1111 1 1222222
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 385 RKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
..+. ..+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++..+.+
T Consensus 268 ~a~~----~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLP----ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCG----GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hhcc----cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 1355677777777777778999999999999999997 56788899999999999999999999987764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0072 Score=44.47 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---C-CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDN---D-NMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
+..-...|...+.+.|+++.|...++.+.+.. . .-.+...++..+..++.+.|+++.|...++++.+++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444566777777777777777777655321 0 1134567788888899999999999999999999999987765
Q ss_pred HHHH
Q 038200 436 QFLL 439 (523)
Q Consensus 436 ~~l~ 439 (523)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.009 Score=52.21 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCCCCCCCCch---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhc-CC
Q 038200 378 EEAEEILRKMPEDNDNMSFE---SIMWVSLLSLCRF-----QGAVAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVA-GQ 447 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~-g~ 447 (523)
..|...+++.++ +.|+ ...|..+...|.. .|+.++|++.|+++++++|+ +..++...+..++.. |+
T Consensus 180 ~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 180 HAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 556666666664 3444 4456666666666 48888888888888888886 488888888888774 88
Q ss_pred hhHHHHHHHHHHhCCCccCCc
Q 038200 448 WEDVARVRELMKKRRMGRMPG 468 (523)
Q Consensus 448 ~~~A~~~~~~m~~~~~~~~~~ 468 (523)
+++|.+.+++..+......|+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHHcCCCCCCCC
Confidence 888888888887765544354
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.098 Score=39.30 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=70.7
Q ss_pred hcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH---HHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhc
Q 038200 337 RAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE---AEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQ 411 (523)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 411 (523)
.......+.+-|...... +. ++..+--.+..++.++.+... ++.+++++... -.| .......+.-++.+.
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHh
Confidence 334455666667666553 33 777777788889999887776 89999998853 234 334455556689999
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
|++++|.++++.+++.+|++..+..
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999998876544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.024 Score=40.53 Aligned_cols=68 Identities=7% Similarity=-0.133 Sum_probs=39.7
Q ss_pred CChHHHHHHHHHHHcCCC---hHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 359 PNFAHYWCMANLYAGAEL---TEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
.++..+..+..++...++ .++|..++++.++. .| +......+...+...|++++|...++++.+.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 345555555555543333 56666666666642 33 3444445555666667777777777777666665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.29 Score=39.30 Aligned_cols=102 Identities=10% Similarity=0.047 Sum_probs=53.6
Q ss_pred hhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 264 YSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ |..+.-.|...|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------HHHHHHHHHHhCCHHH
Confidence 34556666666665554 2455666666666666666666666665433 2233333444455554
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
-.++-+..... | -++.-...+.-.|+++++.+++.+.-
T Consensus 79 L~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44443333332 1 12333344455566666666666655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0037 Score=58.43 Aligned_cols=141 Identities=14% Similarity=0.061 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHH
Q 038200 19 NNSFWTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCA 98 (523)
Q Consensus 19 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 98 (523)
..|.+|+.|..+..+.+.+.+|++.|- ...|...|..++.+..+.|.+++-+..+.-.++.. -++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 467889999999999999999988774 34566778889999999999999998887666653 33344468888999
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC------------------------CCCcc
Q 038200 99 KTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS------------------------PRDLI 154 (523)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~ 154 (523)
+.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9888766544321 3455555556666666666666666665543 13566
Q ss_pred hHHHHHHHHHhcCCHH
Q 038200 155 SWNSIVSGHVRSGDMS 170 (523)
Q Consensus 155 ~~~~ll~~~~~~~~~~ 170 (523)
+|-.+-.+|...+.+.
T Consensus 201 tWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFR 216 (624)
T ss_dssp SHHHHTHHHHHSCTTT
T ss_pred HHHHHHHHHhCchHHH
Confidence 7777776666544433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=1.2 Score=44.11 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHH--HHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCC
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEI--TFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAEL 376 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (523)
.+.+.|..+|........ ..+... ....+.......+...++...+...... ..+.....-.+....+.|+
T Consensus 228 ~d~~~A~~~~~~~~~~~~----~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ----LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGD 300 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhhhhccC----CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCC
Confidence 377899999988865430 222221 2233333444455355666666665442 2343344445555567799
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
++.|...|+.|... .........=+..+....|+.++|..+|+.+.+
T Consensus 301 ~~~a~~~~~~l~~~---~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 301 RRGLNTWLARLPME---AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHSCTT---GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccc---ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999842 111233233344567788999999999999875
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.42 Score=38.38 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=90.5
Q ss_pred HhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 038200 229 CGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLF 308 (523)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 308 (523)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 45678888888887655 3678899999999999999999999998875 445555566778887777776
Q ss_pred HHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 309 TALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 309 ~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
+.....| -++.....+...|+++++.++|.+... -|... ......|..+.|.++.+++-
T Consensus 84 ~iA~~~g-----------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE-----------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT-----------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc-----------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 6666655 345556667778999999999877643 12111 11223566778888877764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.09 Score=45.99 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred cCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH-HHhc--CC------HHHHHHHHHHHhhcCCC--ChhhHHHHHHH
Q 038200 373 GAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL-CRFQ--GA------VAMVERLAKSFVDMDPQ--DFSRYQFLLNV 441 (523)
Q Consensus 373 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--g~------~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 441 (523)
+.++..+-.+.+.++.. -.+....|..++.+ +... |+ ...|...++++++++|+ +..+|..|+..
T Consensus 133 ~~~~~~~~~~~l~~~~~----~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~l 208 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTR----VDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKF 208 (301)
T ss_dssp TSSCHHHHHHHHTTCCG----GGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCc----cccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 34444444455555542 24556777777764 3332 32 78899999999999998 67899999999
Q ss_pred HHhc-----CChhHHHHHHHHHHhCCCccCCceeEEEeCCeEEEEecCC-CCchHHHHHHHHHHhcccC
Q 038200 442 YAVA-----GQWEDVARVRELMKKRRMGRMPGCRLVDLKEVVEKLKVGH-FWRGGMKEEVNKMMECRQS 504 (523)
Q Consensus 442 ~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 504 (523)
|.+. |+.++|.+.|++..+.+.....+ .+.....|+... .+..++.+.|++.+..+|.
T Consensus 209 Y~~vPp~~gGd~ekA~~~ferAL~LnP~~~id-----~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 209 YAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD-----HHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH-----HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhCCCccCCCHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9994 99999999999998865432232 111223333332 6788899999999998887
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.045 Score=40.08 Aligned_cols=65 Identities=8% Similarity=-0.032 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMD-------PQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+......+...+...|+++.|...++.+.+.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455677888999999999999999998742 345678999999999999999999999998764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=44.85 Aligned_cols=81 Identities=6% Similarity=-0.089 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcC-C-CChhhHHHHHHHHHhcCChhHHH
Q 038200 378 EEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG---AVAMVERLAKSFVDMD-P-QDFSRYQFLLNVYAVAGQWEDVA 452 (523)
Q Consensus 378 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 452 (523)
..+.+.|.+....+ .++..+...+..++.+.+ +.+++..+++.+.+.+ | +....+..|+.+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~---~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT---CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC---CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555555554322 367777778888888887 6779999999999988 6 46788999999999999999999
Q ss_pred HHHHHHHhC
Q 038200 453 RVRELMKKR 461 (523)
Q Consensus 453 ~~~~~m~~~ 461 (523)
++++++.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.055 Score=41.74 Aligned_cols=112 Identities=11% Similarity=0.157 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHhhcCcH------HHHHHHHHHhhHhcCCCCChHH-HHHHHH------HHHcCCChHHHHHHHHhCCCC
Q 038200 324 DEITFIGVICACVRAELL------TEGRKYFRQMIDFYKIKPNFAH-YWCMAN------LYAGAELTEEAEEILRKMPED 390 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 390 (523)
|..+|-..+....+.|+. +..+++|+++.. .++|+... |...|. .+...++.++|.++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455666666666666666 777788888887 57775311 111111 123447899999999988654
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 391 NDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 391 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+ +.+|......-.++|+...|..++.+++.+.|.+...+...+.
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 3333 7788888888889999999999999999999977665555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.82 E-value=1.3 Score=45.76 Aligned_cols=25 Identities=4% Similarity=-0.156 Sum_probs=17.9
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHH
Q 038200 90 FVSLFGSCAKTGCVERGGMCHGLAL 114 (523)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~~~ 114 (523)
|..++.+..+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666677777777777777765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.089 Score=53.21 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELM 458 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 458 (523)
...|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445778899999999999999999999999999999999999999999998876
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.88 Score=34.38 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=43.9
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
.+|++......+-.+.. +.......+..+...|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n------~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN------NEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc------CCCChHHHHHHHHHHHHhcchhhHH
Confidence 34444444444444433 2233344455556666666666666664332 3455666666666666666666666
Q ss_pred HHHHHhhHh
Q 038200 346 KYFRQMIDF 354 (523)
Q Consensus 346 ~~~~~~~~~ 354 (523)
+++.++-+.
T Consensus 146 eLl~~AC~k 154 (172)
T 1wy6_A 146 TLLIEACKK 154 (172)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.27 Score=37.95 Aligned_cols=100 Identities=5% Similarity=-0.119 Sum_probs=71.1
Q ss_pred ChHHHHHHHHHHHcCCCh------HHHHHHHHhCCCCCCCCCchH--------HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 360 NFAHYWCMANLYAGAELT------EEAEEILRKMPEDNDNMSFES--------IMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
|..+|...+..+-+.|+. ++..++|++.... ++|+. ..|...+ .+...+|.++|.++|+.++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 566777777777766777 7777777776643 45541 2222222 2344589999999999998
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
++...=..+|...+..-.++|+...|.+++.+....+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 87444466777778888899999999999999877553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.53 E-value=1.4 Score=41.86 Aligned_cols=187 Identities=11% Similarity=0.071 Sum_probs=120.6
Q ss_pred CChHHHHHHHHhcCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHh--
Q 038200 268 QKVEVAQRVFDSMAD---------RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACV-- 336 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~-- 336 (523)
|+++.|++.+-.+.+ ........++..|...|+++...+.+.-+.... -.. ......+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-----~ql-k~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-----GQL-KLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-----TTS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-----hhh-HHHHHHHHHHHHHH
Confidence 678888887755532 234578889999999999999999998887765 222 222334443332
Q ss_pred --hcCc--HHHHHHHHHHhhHhc--CCCC---ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch---HHHHHHH
Q 038200 337 --RAEL--LTEGRKYFRQMIDFY--KIKP---NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE---SIMWVSL 404 (523)
Q Consensus 337 --~~~~--~~~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l 404 (523)
.... .+.-..+.+.+.... .+-. .......|...|...|++.+|.+++.++.....+.... ...+...
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2222 222222332221110 1111 22345678899999999999999999876332222222 3455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh---cCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 405 LSLCRFQGAVAMVERLAKSFVD---MDPQD----FSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~---~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
+..|...+++..|..+++++.. ..+.+ ...+...+..+...++|.+|-+.|.+..+
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7789999999999999998753 22222 23667788888999999999888877754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.27 Score=45.90 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCCc
Q 038200 401 WVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK-----RRMGRMPG 468 (523)
Q Consensus 401 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 468 (523)
...++.++...|+++++...++.+...+|-+...+..|+.+|.+.|+..+|++.|+++.+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345566778899999999999999999999888999999999999999999999998754 47777665
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.90 E-value=5 Score=35.98 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=12.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHH
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELF 176 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~ 176 (523)
|+.....+...|.+.+++.+|+..|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3444444444555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.69 E-value=14 Score=38.41 Aligned_cols=251 Identities=9% Similarity=-0.047 Sum_probs=138.7
Q ss_pred HHHhcCCHHHHHHHHhcCCC----CCh--hHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPE----RNV--VSWNIMISGYSKSGNPGCSLKLFREMMKSGF-------RGNDKTMASVLTA 228 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll~~ 228 (523)
+....|+.++++.+++.... .+. ..-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45678888899999988764 222 2233344455666776778887777665321 0111112222223
Q ss_pred H--hccccHHHHHHHHHHHHHcCCCCch--HHHHHHhhhhhhcCChHHHHHHHHhcCC-CChH--HHHHHHHHHHhcCCh
Q 038200 229 C--GRSARFNEGRSVHGYTVRTSLKPNI--ILDTALIDLYSKCQKVEVAQRVFDSMAD-RNLV--CWNAMILGHCIHGKP 301 (523)
Q Consensus 229 ~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~--~~~~li~~~~~~g~~ 301 (523)
+ .-.++ +++.+.+..+....- +.. ..--+|...+.-.|+-+....++..+.+ .+.. -...+.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3 33343 345555555554321 111 1222344455667777777777665432 2222 233344455577888
Q ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHH--HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHH
Q 038200 302 EEGIKLFTALVNGTVAGGSISPDEIT--FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEE 379 (523)
Q Consensus 302 ~~a~~~~~~m~~~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 379 (523)
+.+..+.+.+.... .|.... ...+..+|+..|+.....+++..+.+ ....++.....+.-++...|+.+.
T Consensus 541 e~~~~li~~L~~~~------dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 541 ELADDLITKMLASD------ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGGHHHHHHHHHCS------CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHHHHHHHHHHhCC------CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHH
Confidence 88888888887632 232221 22344577888998888889998887 333344444444445555777777
Q ss_pred HHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 038200 380 AEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAV-AMVERLAKSFV 425 (523)
Q Consensus 380 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 425 (523)
+.++++.+.+. ..|...--..+.-+....|+. ..+...+..+.
T Consensus 613 v~rlv~~L~~~---~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 613 VPRIVQLLSKS---HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHTTTGGGC---SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77777766642 345544433444444444443 56666777665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.56 E-value=1.2 Score=31.52 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
+.-+..+-++.+.... +.|++......+++|.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~D-----lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD-----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSS-----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 4556677777777777 8899999999999999999999999999999885 33344567666653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.38 E-value=1.4 Score=33.05 Aligned_cols=87 Identities=13% Similarity=-0.011 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH---HHHHHHHhhHhcCCCC--ChHHHHHHHHHHHc
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE---GRKYFRQMIDFYKIKP--NFAHYWCMANLYAG 373 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 373 (523)
.....+.+.|.+....+ .|+..+-..+..++.++..... ++.+++.+.+. -.| .....-.|.-++.+
T Consensus 15 ~~l~~~~~~y~~e~~~~------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHS------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 34455566666665555 3777777777788888776655 88888888773 223 34555667788899
Q ss_pred CCChHHHHHHHHhCCCCCCCCCch
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFE 397 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~ 397 (523)
.|++++|.+.++.+++ +.|+
T Consensus 87 lg~Y~~A~~~~~~lL~----~eP~ 106 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQ----TEPQ 106 (126)
T ss_dssp TTCHHHHHHHHHHHHH----HCTT
T ss_pred hhhHHHHHHHHHHHHH----hCCC
Confidence 9999999999999886 4664
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.24 E-value=2.8 Score=29.56 Aligned_cols=59 Identities=12% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 162 GHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 162 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
.+...|++++|..+.+....||...|.+|.. .+.|-.+++...+.++...| .|....|.
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4667788888888888888888888876643 46777777777777776665 44444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.22 E-value=7.7 Score=34.50 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKS 197 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 197 (523)
|+..+..+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 3344444445555555555555544422212344444444444433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.10 E-value=2.6 Score=29.65 Aligned_cols=60 Identities=13% Similarity=0.028 Sum_probs=44.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 038200 161 SGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMA 223 (523)
Q Consensus 161 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 223 (523)
..+...|++++|..+.+....||...|.+|. -.+.|-.+++...+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3466788888888888888888888887764 347788888888887777776 45544443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.95 Score=35.71 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=27.8
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCCh-------HHHHHHHHHHHcCCChHHHHHHHHhC
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNF-------AHYWCMANLYAGAELTEEAEEILRKM 387 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~ 387 (523)
+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344455555555555555443321222221 23444555666666666666666553
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.71 E-value=4.2 Score=31.11 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=55.2
Q ss_pred CCChHHHHHHHHHHHcCCChH---HHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 358 KPNFAHYWCMANLYAGAELTE---EAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
.|+..+--.+..++.++.+.+ +++.+++++.... ..-.......+.-++.+.|++++|.++.+.+++.+|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 567777777788888877654 5777888877421 11233444555668999999999999999999999988654
Q ss_pred H
Q 038200 435 Y 435 (523)
Q Consensus 435 ~ 435 (523)
.
T Consensus 114 ~ 114 (144)
T 1y8m_A 114 G 114 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.71 E-value=11 Score=35.73 Aligned_cols=186 Identities=9% Similarity=0.089 Sum_probs=117.4
Q ss_pred cCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHh----hhhhhc
Q 038200 197 SGNPGCSLKLFREMMKS-----GFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALI----DLYSKC 267 (523)
Q Consensus 197 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 267 (523)
.|+++.|++.+-.+.+. +..........++..|...++++...+.+..+.+..-.. ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788998888776642 234456678888999999999999888777666542222 22222233 333233
Q ss_pred CChH--HHHHHHHhcCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCH-----HHHHH
Q 038200 268 QKVE--VAQRVFDSMAD---R-------NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDE-----ITFIG 330 (523)
Q Consensus 268 ~~~~--~a~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~-----~~~~~ 330 (523)
...+ .-..+.+.... . .......|...|...|++.+|..++..+...- ...+. ..+..
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-----~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-----YGSMEMSEKIQFILE 182 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSSSCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-----HhcccHHHHHHHHHH
Confidence 3322 22333333322 1 11234567788888999999999999888765 22222 34556
Q ss_pred HHHHHhhcCcHHHHHHHHHHhhHh-cCCCCC----hHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 331 VICACVRAELLTEGRKYFRQMIDF-YKIKPN----FAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
.++.|...+++..|..+++++... +...++ ...|...+..+...+++.+|.+.|.++.
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667788889999998888887532 122222 2455667777778888888888777766
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.60 E-value=1.6 Score=34.37 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-------HHHHHHHHHHHhhcCcHHHHHHHHHHhhHh
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-------EITFIGVICACVRAELLTEGRKYFRQMIDF 354 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (523)
.-+..+...|.++.|.-+...+..... ..|+ ..++..+..++...+++..|...|++..+.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~----~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSN----NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH----HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhc----CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 345566777888888777666543210 1232 135667778889999999999999987553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.50 E-value=2.2 Score=43.26 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC-hHHHHHHHHhc-----------CCCChH--
Q 038200 222 MASVLTACGRSAR-FNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK-VEVAQRVFDSM-----------ADRNLV-- 286 (523)
Q Consensus 222 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~-----------~~~~~~-- 286 (523)
...++..+...++ .+.|..+++.+.+.....+......++..+...++ --+|.+++.+. ...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555655 47788888887776432222223333333333322 11233333222 122211
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 287 --------CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 287 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
....-..-+...|+++-|+++-++.+. ..|+ -.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~-------~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE-------LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh-------cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111113345678999999999999988 4565 568999999999999999999888887
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.21 E-value=2.1 Score=32.31 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHcCCCh---HHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 358 KPNFAHYWCMANLYAGAELT---EEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
.|++.+--.+..++.++.+. .+++.+++++... .| ....+..+.-++.+.|++++|.++.+.+++.+|++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45666666677777777655 4577888887742 24 244555666689999999999999999999999876
Q ss_pred hhH
Q 038200 433 SRY 435 (523)
Q Consensus 433 ~~~ 435 (523)
.+.
T Consensus 113 QA~ 115 (134)
T 3o48_A 113 QVG 115 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.07 E-value=7.2 Score=32.25 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=8.5
Q ss_pred CCCCcccHHHHHHHHHhCCC
Q 038200 48 NNPGTFCVNAVIKAYSNSCV 67 (523)
Q Consensus 48 ~~~~~~~~~~ll~~~~~~~~ 67 (523)
..++...-...+..+.+.+.
T Consensus 29 ~~~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 29 QDDSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCC
Confidence 33444333344444444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.26 E-value=3 Score=38.84 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH----hcCCCCChH
Q 038200 287 CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID----FYKIKPNFA 362 (523)
Q Consensus 287 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 362 (523)
....++..+...|++++++..+..+.... +-+...+..+|.++...|+..+|++.|+.+.+ +.|+.|++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34456677888899999999988888753 44778899999999999999999998888654 358888877
Q ss_pred HHH
Q 038200 363 HYW 365 (523)
Q Consensus 363 ~~~ 365 (523)
+-.
T Consensus 247 l~~ 249 (388)
T 2ff4_A 247 LRA 249 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.99 E-value=2.9 Score=31.47 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
+.-+..+-++.+.... +.|++......+.+|-+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~D-----lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYD-----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSS-----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 4455666777777776 8899999999999999999999999999999885 44445667766653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=23 Score=35.08 Aligned_cols=379 Identities=9% Similarity=-0.077 Sum_probs=179.9
Q ss_pred HHHHHHHHhhccCCchhHHHHhccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC
Q 038200 23 WTINLLKHSADFGSPDYTVLVFKCINNPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGC 102 (523)
Q Consensus 23 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 102 (523)
+-+.-+..+.+.+++....+++.. ++.+...-.....+....|+..+|......+-..| .........++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334444455555555555555544 22233333344455555555555555555544433 2223334444444433332
Q ss_pred chHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038200 103 VERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPER 182 (523)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 182 (523)
+.. ...-.-+......|+...|..+...+..........++..+.. ...+........ +
T Consensus 152 lt~-----------------~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~ 210 (618)
T 1qsa_A 152 QDP-----------------LAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-A 210 (618)
T ss_dssp SCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-C
T ss_pred CCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-C
Confidence 211 1111122333445556666665555522221222333333322 222233333222 1
Q ss_pred Chh---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchH
Q 038200 183 NVV---SWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT----MASVLTACGRSARFNEGRSVHGYTVRTSLKPNII 255 (523)
Q Consensus 183 ~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (523)
+.. .+...+.-+.+ .+.+.|...|....+.. ..+... ...+.......+...++...+....... .+..
T Consensus 211 ~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 286 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS 286 (618)
T ss_dssp CHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred ChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChH
Confidence 111 12222333333 37788999888886543 223222 2233333444553455556666544432 2333
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHH
Q 038200 256 LDTALIDLYSKCQKVEVAQRVFDSMADRN---LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVI 332 (523)
Q Consensus 256 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll 332 (523)
...-.+....+.|+++.|...|..|.... ....-=+..++...|+.++|..+|..+... . +|-.++
T Consensus 287 ~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---------~--~fYg~l 355 (618)
T 1qsa_A 287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---------R--GFYPMV 355 (618)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------C--SHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---------C--ChHHHH
Confidence 33334444556799999999999987632 222333455677889999999999988652 1 233332
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCC-h-----HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHH
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPN-F-----AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLS 406 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 406 (523)
.+ .+.|..-. .... ...+. . ..-..-+..+...|....|...+..+... ..++ ....+..
T Consensus 356 Aa-~~Lg~~~~-------~~~~-~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~--~~~~la~ 421 (618)
T 1qsa_A 356 AA-QRIGEEYE-------LKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKT--EQAQLAR 421 (618)
T ss_dssp HH-HHTTCCCC-------CCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHH--HHHHHHH
T ss_pred HH-HHcCCCCC-------CCCC-CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHH--HHHHHHH
Confidence 11 12221000 0000 00010 0 01122345677889999999888887742 2332 2234444
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC---CChhhHHHHHHHHHhcCChhHHHH
Q 038200 407 LCRFQGAVAMVERLAKSFVDMDP---QDFSRYQFLLNVYAVAGQWEDVAR 453 (523)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~ 453 (523)
.....|....+..........+. .-|..|..++.-+.+.-.++..+-
T Consensus 422 ~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~ll 471 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYA 471 (618)
T ss_dssp HHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHHH
T ss_pred HHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHHH
Confidence 45667878777766554332220 012345666666665555555443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.41 E-value=18 Score=33.46 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=105.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHcCCCC-----chHHHHHHhhhhhhcCChHHHHHHHHhcCC------CChHH----HH
Q 038200 225 VLTACGRSARFNEGRSVHGYTVRTSLKP-----NIILDTALIDLYSKCQKVEVAQRVFDSMAD------RNLVC----WN 289 (523)
Q Consensus 225 ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~----~~ 289 (523)
++..|...|++.+|..++..+.+.--.. -..++..-+..|...+++.++...+..... +++.. ..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 4455555666666655555554421110 123444455556666666666655544321 11111 11
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhCCCCCCCcCCC---HHHHHHHHHHHhhcCcHHHHHHHH-HHhhHhcCCCCChHHH
Q 038200 290 AMILGHC-IHGKPEEGIKLFTALVNGTVAGGSISPD---EITFIGVICACVRAELLTEGRKYF-RQMIDFYKIKPNFAHY 364 (523)
Q Consensus 290 ~li~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 364 (523)
.-...+. ..+++..|...|-+....-. .. ..|. ...|..|..... ....+ .-.++ ......+ ..|....+
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~-~~~~~~~~lkYlvL~aLl~-~~r~e-l~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFD-SV-DSVKALTSLKYMLLCKIML-GQSDD-VNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHT-TT-CHHHHHHHHHHHHHHHHHT-TCGGG-HHHHHHSHHHHTT-CSHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhccc-cc-ccHHHHHHHHHHHHHHHHc-CCHHH-HHHHhcccccccc-CCccHHHH
Confidence 1123344 56777777776665532110 00 0121 123333322222 22111 11222 1222222 34666667
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 365 WCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 365 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..|+.+|. .+++.+..++++..... +..|......+-..+.. --...+.++ ..|-..-.+..++..+.-
T Consensus 260 ~~L~~a~~-~~dl~~f~~iL~~~~~~---l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 260 KSVAEASH-KRSLADFQAALKEYKKE---LAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHSTTT---TTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHHHHTC
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHH---HhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHHHHCc
Confidence 77777664 56888888888776532 45555432111111100 001111122 345555677777777654
Q ss_pred cCChhHHHHHHHHHHhCCC
Q 038200 445 AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~~~~ 463 (523)
..+++...+-+|...|.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 67889999999988764
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=87.41 E-value=11 Score=30.86 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=58.8
Q ss_pred CCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 038200 120 FELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGN 199 (523)
Q Consensus 120 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 199 (523)
++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++..+-...+.++...|.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 34555555555555555554444444444455555555566666666665544445555555666666666666666665
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038200 200 PGCSLKLFREMMKSGFRGNDKTMASVLTACGR 231 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 231 (523)
..+...+..+.+. ++...-...+.++.+
T Consensus 168 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 168 -ERVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 4455556555543 344444444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.75 E-value=3.7 Score=30.97 Aligned_cols=67 Identities=4% Similarity=-0.115 Sum_probs=52.9
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+..+-..+..++.+..+ ..++..+++.+.+.+|. ....+..|+.++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555565666666666654 56788899998888884 4678889999999999999999999999654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.69 E-value=5.4 Score=30.51 Aligned_cols=67 Identities=4% Similarity=-0.115 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 SFESIMWVSLLSLCRFQGA---VAMVERLAKSFVDMDPQ-DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.|+..+-..+..++.+..+ ..++..+++.+....|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566666666677776654 56888899999888884 5567888999999999999999999999764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.32 E-value=7.1 Score=27.72 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+.=+..+-++.+. +...-|++.+..+.+.+|++.+++..|.++++-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~--~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3445555566655 3347888889999999999999999999999988764443445566654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.86 E-value=7.3 Score=27.46 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346778888777777653 22232333456778899999999999999999999987755 47888888888888888
Q ss_pred hCCCCCCCcCCCHHHHHH
Q 038200 313 NGTVAGGSISPDEITFIG 330 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~ 330 (523)
.+| .|....|..
T Consensus 96 ~sg------~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS------DPALADFAA 107 (115)
T ss_dssp TCS------SHHHHHHHH
T ss_pred hCC------CHHHHHHHH
Confidence 876 565555543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.74 E-value=22 Score=32.86 Aligned_cols=229 Identities=10% Similarity=0.005 Sum_probs=119.7
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--------CCcchHHHHHHHHHhc-CCHHHHHHHHhcCCC---CChhHH-----
Q 038200 125 MNSLINMYGCFGAMDCARNMFVQMSP--------RDLISWNSIVSGHVRS-GDMSAAHELFDIMPE---RNVVSW----- 187 (523)
Q Consensus 125 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~---~~~~~~----- 187 (523)
...|...|.+.|+.++..+++....+ ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655542 1222344444444433 222222233222221 111223
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCchHHHH-
Q 038200 188 -NIMISGYSKSGNPGCSLKLFREMMKSGFRGN-----DKTMASVLTACGRSARFNEGRSVHGYTVRT--SLKPNIILDT- 258 (523)
Q Consensus 188 -~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~- 258 (523)
.-++..|...|++.+|.+++..+.+.--..| ...|..-+..|...+++.++...+...... .+.+++.+..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 2577888999999999988888876311212 134556667788889999999888877543 2223332222
Q ss_pred ---HHhhhhh-hcCChHHHHHHHHhcC----CCC------hHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCCcCC
Q 038200 259 ---ALIDLYS-KCQKVEVAQRVFDSMA----DRN------LVCWNAMILGHCIHGKPEEGIKLFT-ALVNGTVAGGSISP 323 (523)
Q Consensus 259 ---~l~~~~~-~~~~~~~a~~~~~~~~----~~~------~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~p 323 (523)
.-.-.+. ..+++..|...|-+.- +.+ ...|..+... . .++..+.-.++. .....- ..|
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL-l-~~~r~el~~~l~~~~~~~~-----~~p 254 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI-M-LGQSDDVNQLVSGKLAITY-----SGR 254 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-H-TTCGGGHHHHHHSHHHHTT-----CSH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-H-cCCHHHHHHHhcccccccc-----CCc
Confidence 2233455 6788888877776542 111 1223222222 2 222222222221 111111 236
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAH 363 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (523)
+...+..++.++. .+++.....+++.... .+..|+..
T Consensus 255 ei~~l~~L~~a~~-~~dl~~f~~iL~~~~~--~l~~D~~l 291 (394)
T 3txn_A 255 DIDAMKSVAEASH-KRSLADFQAALKEYKK--ELAEDVIV 291 (394)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHSTT--TTTTSHHH
T ss_pred cHHHHHHHHHHHH-hCCHHHHHHHHHHHHH--HHhcChHH
Confidence 6666666766654 4778777777777655 34555543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.56 E-value=10 Score=32.67 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=76.7
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
....+.|++++++.....-++ .-+-|......|+..+|-.|+++.|.+-++...+......|....|..++.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999988888877 5666888888999999999999999998888775322222333444444433
Q ss_pred CHHHHHHHHHHHhh--cCC---C-ChhhHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 038200 413 AVAMVERLAKSFVD--MDP---Q-DFSRYQFLLNVYA--VAGQWEDVARVRELMKKR 461 (523)
Q Consensus 413 ~~~~a~~~~~~~~~--~~p---~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 461 (523)
+..=..+.. ..| . .+.-...|+.+.. ..|+.++|..+..+..+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 122222222 112 1 2334445555554 469999999999888765
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.30 E-value=7.9 Score=27.34 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=63.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
...++|..|-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|.++-. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777777653 22232333456778899999999999999999999987765 47788888888888888
Q ss_pred hCCCCCCCcCCCHHHHH
Q 038200 313 NGTVAGGSISPDEITFI 329 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~ 329 (523)
.+| .|....|.
T Consensus 97 ~sg------~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ------DPRIQTFV 107 (116)
T ss_dssp TCC------CHHHHHHH
T ss_pred hCC------CHHHHHHH
Confidence 776 56555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.98 E-value=9 Score=41.51 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=75.4
Q ss_pred HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCC--CC--C-----------
Q 038200 330 GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDN--DN--M----------- 394 (523)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~----------- 394 (523)
.++..+...+..+.+.++..-.. .++..--.+..+|...|++++|.+.|++....- .. .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34455555666655555443322 233333456667777788888888887764210 00 0
Q ss_pred -----CchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 395 -----SFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-QDF----SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 395 -----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
..-..-|..++..+.+.+.++.+.++.+.+++..+ ++. ..|..+...+...|++++|...+-.+.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 00112355666677778888888888888777443 332 25667778888888888887777666544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.81 E-value=25 Score=38.07 Aligned_cols=85 Identities=7% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc----hHHHHHHhhhhhhcCChHHHHHHHHhcCCC--ChHHHHHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPN----IILDTALIDLYSKCQKVEVAQRVFDSMADR--NLVCWNAMIL 293 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~li~ 293 (523)
.-|..++..+.+.+.++.+.++-..+.+...+.+ ...|..+...+...|++++|...+-.+... -......++.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3467777778888888888877777666432211 235777888888889999988888766432 2345667777
Q ss_pred HHHhcCChHHH
Q 038200 294 GHCIHGKPEEG 304 (523)
Q Consensus 294 ~~~~~g~~~~a 304 (523)
..|..|..+.-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 77777765543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=84.25 E-value=15 Score=31.71 Aligned_cols=115 Identities=13% Similarity=0.053 Sum_probs=57.7
Q ss_pred HHHHHhhccCCchhHHHHhccCCCCCcc----cHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCccc--HHHHHHHHHc
Q 038200 26 NLLKHSADFGSPDYTVLVFKCINNPGTF----CVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYT--FVSLFGSCAK 99 (523)
Q Consensus 26 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 99 (523)
..+...++.|+++....+++.-...+.. -+ +.+...+..|+. ++++.+.+.|..++... -.+.+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE----DIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 4455566778888777777764433222 22 234444555664 34555556665554321 1123344445
Q ss_pred cCCchHHHHHHHHHHHhCCCCCchH--HHHHHHHHHccCChHHHHHHHhhcC
Q 038200 100 TGCVERGGMCHGLALKNGVDFELPV--MNSLINMYGCFGAMDCARNMFVQMS 149 (523)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~ 149 (523)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-.
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 55543 4444455565544221 1123344455666666666665543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.90 E-value=15 Score=29.99 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=22.6
Q ss_pred hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 377 TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 377 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
..++.++|..|..++-|.. -+..|......+-..|++++|..+|+..++
T Consensus 95 ~~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTK-LSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555543332211 233344444444455555555555555554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.98 E-value=4 Score=35.20 Aligned_cols=132 Identities=12% Similarity=0.076 Sum_probs=77.4
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh---hHHHHHHHHHh
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS---RYQFLLNVYAV 444 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 444 (523)
+..+.+.|++++|++.+..-++. -+-|...-..++..++..|++++|..-++...+++|.... .|..++.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~---- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK---- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----
Confidence 34567888999999888776653 3446666677778888999999999999999999885322 2222222
Q ss_pred cCChhHHHHHHHHHHhCCCccCCce-----eEEEeCCeEEEEe-cCCCCchHHHHHHHHHHhcccCCccccccccccc
Q 038200 445 AGQWEDVARVRELMKKRRMGRMPGC-----RLVDLKEVVEKLK-VGHFWRGGMKEEVNKMMECRQSRSLATVSKQLPW 516 (523)
Q Consensus 445 ~g~~~~A~~~~~~m~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 516 (523)
|.....++..-+ ..|+. .|+.. .+.... ...++..++.+.-.+..+..|..+...+...+.|
T Consensus 77 ------aE~~R~~vfaG~--~~P~~~g~~~~w~~~--ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~~~~F~w 144 (273)
T 1zbp_A 77 ------AAQARKDFAQGA--ATAKVLGENEELTKS--LVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSD 144 (273)
T ss_dssp ------HHHHHHHHTTSC--CCEECCCSCHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEESC
T ss_pred ------HHHHHHHHHcCC--CCCCCCCCCHHHHHH--HHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcCCCCcch
Confidence 233333333321 22221 01100 000000 0014556677777778888888777776555555
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.70 E-value=29 Score=31.12 Aligned_cols=180 Identities=11% Similarity=0.033 Sum_probs=102.3
Q ss_pred HHccCCh---HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHH--
Q 038200 132 YGCFGAM---DCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKL-- 206 (523)
Q Consensus 132 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-- 206 (523)
....|++ =+|.+.+ .++..-|.+.+++++|++++-. -...+.+.|+...|-++
T Consensus 22 ~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~ 79 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAV 79 (336)
T ss_dssp HHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHH
Confidence 3445666 5555543 3455667777888888776543 22345556666555443
Q ss_pred --HHHHHHCCCCCCHHHHHHHHHHHhccccHH-HHHHHHHHH----HHcC--CCCchHHHHHHhhhhhhcCChHHHHHHH
Q 038200 207 --FREMMKSGFRGNDKTMASVLTACGRSARFN-EGRSVHGYT----VRTS--LKPNIILDTALIDLYSKCQKVEVAQRVF 277 (523)
Q Consensus 207 --~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 277 (523)
++-+.+.++++|..+...++..+.....-+ .=..+.+.+ .+.| ..-+......+...|.+.+++.+|+..|
T Consensus 80 llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 80 LLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 355556677888877777777776554311 112223322 3333 2336778888889999999999999888
Q ss_pred HhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 278 DSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 278 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
-.-..+....+..++.-+...+.. ..++...-..++. |...++...|..+++...+
T Consensus 160 ilg~~~s~~~~a~mL~ew~~~~~~-------------------~e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 160 VLGTKESPEVLARMEYEWYKQDES-------------------HTAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TTSCTTHHHHHHHHHHHHHHTSCG-------------------GGHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHhcCC-------------------ccHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 533333335555554444333321 1223333333333 4445788888777766654
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=81.18 E-value=8.3 Score=33.85 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred HHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHH
Q 038200 132 YGCFGAMDCARNMFVQMSPR---DLISWNSIVSGHVRSGDMSAAHELFDIMPER-NVVSWNIMISGYSKSGNPGCSLKLF 207 (523)
Q Consensus 132 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 207 (523)
.+..|+.+-+.-+++.-..+ +..-+.+.+...+..|+.+-+.-+++.-... +...-.+.+...+..|+.+-+.-++
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 34455555555555442211 2222233444444556655555555544332 1111222333344555555444444
Q ss_pred HH
Q 038200 208 RE 209 (523)
Q Consensus 208 ~~ 209 (523)
+.
T Consensus 182 ~~ 183 (285)
T 3kea_A 182 DY 183 (285)
T ss_dssp HH
T ss_pred Hc
Confidence 33
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 523 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.2 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.37 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.24 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.23 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.05 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.01 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.87 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.7 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.48 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.33 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.14 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.64 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.36 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.34 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-23 Score=198.75 Aligned_cols=373 Identities=11% Similarity=0.022 Sum_probs=285.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCCh
Q 038200 59 IKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAM 138 (523)
Q Consensus 59 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 138 (523)
...+.+.|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++.+++..+. +..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344556677777777777776642 234556666667777777777777777777776533 566777777777777777
Q ss_pred HHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038200 139 DCARNMFVQMSP---RDLISWNSIVSGHVRSGDMSAAHELFDIM---PERNVVSWNIMISGYSKSGNPGCSLKLFREMMK 212 (523)
Q Consensus 139 ~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 212 (523)
++|.+.+..... .+...+..........+....+....... ..................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 777777766652 23333333333333444444333333322 223445555666677778888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHH
Q 038200 213 SGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWN 289 (523)
Q Consensus 213 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 289 (523)
.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...+++... .+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 53 3456677888888999999999999999988865 33577888899999999999999999988643 4667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 290 AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 290 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
.+...+...|++++|+..|++..+.. +-+..++..+...+...|++++|...++.... ..+.+...+..+..
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ------PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHH
Confidence 89999999999999999999999853 23467888999999999999999999999988 45667888999999
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 038200 370 LYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQ 447 (523)
Q Consensus 370 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 447 (523)
.+...|++++|++.+++..+. .| +..++..+...+...|++++|...++++++++|+++.+|..|+.+|.+.|+
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999998863 44 467788888999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.5e-22 Score=186.27 Aligned_cols=355 Identities=11% Similarity=0.040 Sum_probs=297.4
Q ss_pred HHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC---CCCcchHHHHHHHHHhcCCH
Q 038200 93 LFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMS---PRDLISWNSIVSGHVRSGDM 169 (523)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 169 (523)
+...+.+.|++++|.+.++.+++..+. +..++..+..+|.+.|++++|...|++.. +.+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 445667889999999999999988644 78889999999999999999999999876 34667899999999999999
Q ss_pred HHHHHHHhcCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 038200 170 SAAHELFDIMPE---RNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 170 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
++|+..+....+ .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 344555555666666777777777666666553 3444555566666778888888888888877
Q ss_pred HcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC
Q 038200 247 RTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISP 323 (523)
Q Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p 323 (523)
... +.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++..... +.
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~ 235 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS------PN 235 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC------TT
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh------hh
Confidence 764 33567888889999999999999999987643 456789999999999999999999999998864 45
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHH
Q 038200 324 DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVS 403 (523)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 403 (523)
+...+..+...+.+.|++++|...|+++.+ ..+-++..+..+...+...|++++|.+.++..... .+.+...+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 310 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNN 310 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc---CCccchhhhH
Confidence 567788889999999999999999999987 34446788999999999999999999999988754 3556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|...|++..+.
T Consensus 311 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999999999999999999999999998654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=8.6e-15 Score=134.04 Aligned_cols=243 Identities=8% Similarity=-0.049 Sum_probs=169.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ 268 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (523)
.....+.+.|++++|...|++.++.. +-+..+|..+..++...|++++|...+.++.+... -+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 45556777788888888887777753 23456777777777777777777777777776542 24556666666666666
Q ss_pred ChHHHHHHHHhcCC--CChH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 269 KVEVAQRVFDSMAD--RNLV-CWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 269 ~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
++++|.+.+++... |+.. .+....... ...+.......+..+...+.+.+|.
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA-------------------------GGAGLGPSKRILGSLLSDSLFLEVK 156 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------CTTHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh-------------------------hhcccccchhhHHHHHHhhHHHHHH
Confidence 66666666665432 1110 000000000 0000011111223344556778888
Q ss_pred HHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 346 KYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
..+.++.+.....++...+..+...+...|++++|+..+++.... .+.+...|..+...+...|++++|...+++++
T Consensus 157 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 233 (323)
T d1fcha_ 157 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRAL 233 (323)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHH
Confidence 888888765334456778888999999999999999999998753 23347788888889999999999999999999
Q ss_pred hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 426 DMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 426 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+++|+++.++..++.+|.+.|++++|+..|++..+.
T Consensus 234 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 234 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-14 Score=133.33 Aligned_cols=271 Identities=13% Similarity=0.040 Sum_probs=200.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 156 WNSIVSGHVRSGDMSAAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 156 ~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
.-.....+.+.|++++|+..|+++.+ | +..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 33456678899999999999999865 4 57789999999999999999999999998853 33567888889999999
Q ss_pred ccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALV 312 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 312 (523)
|++++|.+.++.+.... |+............ ...+.......+..+...+.+.+|...|.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGA---------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhh---------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999998754 32111000000000 00011111112223345566778888888887
Q ss_pred hCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCC
Q 038200 313 NGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDND 392 (523)
Q Consensus 313 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 392 (523)
.... ..++...+..+...+...|++++|...|++.... .+-+...|..+...|...|++++|.+.++++.+.
T Consensus 164 ~~~p----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 235 (323)
T d1fcha_ 164 RLDP----TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-- 235 (323)
T ss_dssp HHST----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHhh----cccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHH--
Confidence 6430 2345677888888999999999999999999874 3446788899999999999999999999998853
Q ss_pred CCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-----------hHHHHHHHHHhcCChhHHHHH
Q 038200 393 NMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-----------RYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 393 ~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 454 (523)
.| +...+..+..+|...|++++|...|+++++++|++.. .+..+..++...|+.+.+...
T Consensus 236 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 236 --QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred --hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34 4677888999999999999999999999998876544 345667777777887765443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=5.2e-10 Score=102.85 Aligned_cols=272 Identities=9% Similarity=-0.040 Sum_probs=193.5
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccccHHHHHHHHHHHHHcCC----CC-chHHHH
Q 038200 188 NIMISGYSKSGNPGCSLKLFREMMKSGFRGN----DKTMASVLTACGRSARFNEGRSVHGYTVRTSL----KP-NIILDT 258 (523)
Q Consensus 188 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~ 258 (523)
......+...|++++|+.++++..+.....+ ...+..+..++...|++++|...+++..+... .+ ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567788999999999988877531111 23566677788888999999988888765321 11 134556
Q ss_pred HHhhhhhhcCChHHHHHHHHhcCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHH
Q 038200 259 ALIDLYSKCQKVEVAQRVFDSMAD-------R----NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEIT 327 (523)
Q Consensus 259 ~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~ 327 (523)
.+...+...|++..+...+..... + ....+..+...+...|+++.+...+......... .+......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 174 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-SCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh-hhhhhHHHH
Confidence 667788888998888887776532 1 1235566778888999999999999888764311 012223456
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-----ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKP-----NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMW 401 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ 401 (523)
+......+...+....+...+........... ....+..+...+...|++++|...+++......+..+ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 66667778888999999888877665322211 1334566777888999999999999998864333222 24556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh------cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVD------MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..+..++...|++++|...++++.. ..|....++..++.+|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677889999999999999999874 2344567889999999999999999999998755
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=3e-11 Score=110.55 Aligned_cols=232 Identities=7% Similarity=-0.056 Sum_probs=172.3
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc--cHHHHHHHHHHHHHcCCCCchHHH-HHHhhhhhhcCChH
Q 038200 195 SKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA--RFNEGRSVHGYTVRTSLKPNIILD-TALIDLYSKCQKVE 271 (523)
Q Consensus 195 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 271 (523)
...|++++|+.+++...+.. +-+...+..+..++...+ ++++|...+..+.+.... +...+ ......+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 34455788999999888753 335556666666665554 588999999999887533 44444 44556777889999
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 038200 272 VAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYF 348 (523)
Q Consensus 272 ~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (523)
+|+..++.+.+ .+...|+.+...+...|++++|...+.+... +.|+.. .+...+...+..+++...+
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~---~~~~~~~~l~~~~~a~~~~ 231 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-------VLLKEL---ELVQNAFFTDPNDQSAWFY 231 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH-------HHHHHH---HHHHHHHHHCSSCSHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH-------hHHHHH---HHHHHHHHhcchhHHHHHH
Confidence 99999998876 3567889999999999998888766655444 223322 2233345556667777777
Q ss_pred HHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 038200 349 RQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDM 427 (523)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 427 (523)
..... ..+++...+..++..+...|+.++|.+.+.+.... .| +...+..+...+...|+.++|..++++++++
T Consensus 232 ~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 232 HRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPE----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77776 34455666777788888889999999999998853 45 4677778888899999999999999999999
Q ss_pred CCCChhhHHHHHHHHHh
Q 038200 428 DPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 428 ~p~~~~~~~~l~~~~~~ 444 (523)
+|.+...|..|...+..
T Consensus 306 dP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 306 DPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CGGGHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhH
Confidence 99888888888877765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.4e-09 Score=98.21 Aligned_cols=291 Identities=12% Similarity=0.026 Sum_probs=182.9
Q ss_pred HHhcCCHHHHHHHHhcCCC--CC------hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 038200 163 HVRSGDMSAAHELFDIMPE--RN------VVSWNIMISGYSKSGNPGCSLKLFREMMKSGF-RGN----DKTMASVLTAC 229 (523)
Q Consensus 163 ~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~ 229 (523)
+...|++++|++++++..+ |+ ...++.+..+|...|++++|...|++..+... .++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4445555555555544321 11 23456666777777888888877777654211 111 23445566667
Q ss_pred hccccHHHHHHHHHHHHHc----CCCC---chHHHHHHhhhhhhcCChHHHHHHHHhcCC--------CChHHHHHHHHH
Q 038200 230 GRSARFNEGRSVHGYTVRT----SLKP---NIILDTALIDLYSKCQKVEVAQRVFDSMAD--------RNLVCWNAMILG 294 (523)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~ 294 (523)
...|++..+...+...... .... ....+..+...+...|+++.+...+..... .....+..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 7778888888777765542 1111 123455667778888888888887776532 123455666677
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCC--CChHHHHHHHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIK--PNFAHYWCMANLY 371 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 371 (523)
+...++...+...+.+............+. ...+..+...+...|+++.|...++...+..... .....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 788888888888877665432110001111 2345556667888999999999999887631111 1234556688899
Q ss_pred HcCCChHHHHHHHHhCCCCC--CCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---------ChhhHHHHH
Q 038200 372 AGAELTEEAEEILRKMPEDN--DNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ---------DFSRYQFLL 439 (523)
Q Consensus 372 ~~~g~~~~A~~~~~~~~~~~--~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~ 439 (523)
...|++++|.+.++++.... .+..|+ ...+..+...+...|++++|.+.+++++++.+. ....+..++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 99999999999998765211 123443 456677777899999999999999998875432 223445566
Q ss_pred HHHHhcCChhHHHH
Q 038200 440 NVYAVAGQWEDVAR 453 (523)
Q Consensus 440 ~~~~~~g~~~~A~~ 453 (523)
..+...++.+++..
T Consensus 342 ~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHTTCSCHHHH
T ss_pred HHHHhcCCChHHHH
Confidence 66777788777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=6.6e-10 Score=100.02 Aligned_cols=127 Identities=8% Similarity=0.001 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCchHHHHHHhhh
Q 038200 185 VSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSA-RFNEGRSVHGYTVRTSLKPNIILDTALIDL 263 (523)
Q Consensus 185 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (523)
..|+.+...+.+.+.+++|+.+++++++.. +-+...|+....++...| ++++|...++.+.+... -+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHH
Confidence 345555556666666666666666666642 223344555555555544 35666666666655432 244555555555
Q ss_pred hhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038200 264 YSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVN 313 (523)
Q Consensus 264 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 313 (523)
+.+.|++++|+..++++.+ .+...|..+...+...|++++|++.++++++
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555432 2344555555555555555555555555554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.2e-10 Score=99.29 Aligned_cols=226 Identities=11% Similarity=0.006 Sum_probs=139.2
Q ss_pred chHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHH
Q 038200 200 PGCSLKLFREMMKSGF-RG--NDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRV 276 (523)
Q Consensus 200 ~~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 276 (523)
.+.++..+++...... .+ ...+|..+..+|.+.|++++|...|++.++.. +-+..++..+..+|...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555666654321 11 22356667778888888888888888888764 33677788888888888888888888
Q ss_pred HHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH
Q 038200 277 FDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID 353 (523)
Q Consensus 277 ~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (523)
|+++.+ .+..++..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+......
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc------cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 888754 345678888888889999999999999888743 22343433444445555555555555555444
Q ss_pred hcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCh
Q 038200 354 FYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDF 432 (523)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 432 (523)
. .++...+. ++..+........................|+ ..++..+...+...|++++|...++++++.+|++.
T Consensus 168 ~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 168 S---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp S---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 2 22222222 2333322222222222222222111012232 34566677788899999999999999999999765
Q ss_pred hhHH
Q 038200 433 SRYQ 436 (523)
Q Consensus 433 ~~~~ 436 (523)
..|.
T Consensus 244 ~~~~ 247 (259)
T d1xnfa_ 244 VEHR 247 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=4.7e-09 Score=94.25 Aligned_cols=189 Identities=11% Similarity=0.101 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCC--C-C-hHHHHHHHHHHHhcCChHHHHHHHH
Q 038200 234 RFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMAD--R-N-LVCWNAMILGHCIHGKPEEGIKLFT 309 (523)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~a~~~~~ 309 (523)
..++|..+|++.++...+.+...+...+..+...|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567777777777654444566677777777777888888888777643 2 2 2357777777777778888888888
Q ss_pred HHHhCCCCCCCcCCCHHHHHHHHHH-HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 310 ALVNGTVAGGSISPDEITFIGVICA-CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 310 ~m~~~~~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
++++.. +.+...|...... +...|+.+.|..+|+.+.+. .+.++..|...++.+.+.|+.+.|..+|++..
T Consensus 159 ~al~~~------~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 159 KAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHTST------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhC------CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 777754 2233333333322 23456777788888877773 44456777777777777788888888877765
Q ss_pred CCCCCCCch--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 038200 389 EDNDNMSFE--SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQD 431 (523)
Q Consensus 389 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 431 (523)
... +..|+ ...|...+..-...|+.+.+..+++++.+.-|..
T Consensus 231 ~~~-~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 231 TSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HhC-CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 321 12332 4566666766677777777777777777766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.5e-10 Score=100.07 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcC-ChHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038200 220 KTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQ-KVEVAQRVFDSMAD---RNLVCWNAMILGH 295 (523)
Q Consensus 220 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~ 295 (523)
..|+.+...+.+.+..++|...++.+++.. |-+...|+....++...| ++++|+..+++..+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 455666666777788888888888888865 235677777777777765 47888888877643 4567788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCC
Q 038200 296 CIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAE 375 (523)
Q Consensus 296 ~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (523)
...|++++|+..++++++.. +-+...|..+...+...|++++|+..++++.+. -+-+...|+.+..++.+.+
T Consensus 123 ~~l~~~~eAl~~~~kal~~d------p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HhhccHHHHHHHHhhhhhhh------hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHcc
Confidence 88888888888888888743 234667777888888888888888888888773 2335666776666666555
Q ss_pred C------hHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--ChhhHHHHHHHHHhc--
Q 038200 376 L------TEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ--DFSRYQFLLNVYAVA-- 445 (523)
Q Consensus 376 ~------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-- 445 (523)
. +++|++.+.++++. .+.+...|..+...+.. ...+++...++.+.++.|+ ++..+..++.+|...
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~ 270 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 270 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHh
Confidence 4 46777777776642 12245555555544433 3356677777777776664 344555666666443
Q ss_pred CChhHHHHHHHHHH
Q 038200 446 GQWEDVARVRELMK 459 (523)
Q Consensus 446 g~~~~A~~~~~~m~ 459 (523)
+..+.+...+++..
T Consensus 271 ~~~~~~~~~~~ka~ 284 (315)
T d2h6fa1 271 NQCDNKEDILNKAL 284 (315)
T ss_dssp TTCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55566666665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=3.5e-10 Score=99.09 Aligned_cols=220 Identities=8% Similarity=-0.046 Sum_probs=151.0
Q ss_pred ccHHHHHHHHHHHHHcCCCC---chHHHHHHhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHH
Q 038200 233 ARFNEGRSVHGYTVRTSLKP---NIILDTALIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIK 306 (523)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~ 306 (523)
.+.+.+..-++++....... ...++..+..+|.+.|++++|+..|++..+ .+..+|+.+..+|...|++++|+.
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 44566666667766542211 245777788999999999999999998754 577899999999999999999999
Q ss_pred HHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHH
Q 038200 307 LFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILR 385 (523)
Q Consensus 307 ~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 385 (523)
.|+++.+. .|+ ..++..+..++...|++++|...|++..+. .+.+......+...+.+.+..+.+..+..
T Consensus 93 ~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 93 AFDSVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp HHHHHHHH-------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhHHHHH-------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999995 454 668888999999999999999999999884 23344444445555555565555544444
Q ss_pred hCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 386 KMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
...... ...+........+......+..+.+...+.......|....+|..++.+|...|++++|...|++....+
T Consensus 164 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 164 HFEKSD-KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHSC-CCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred Hhhccc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 333211 0122211111111111122234444444444445566667788999999999999999999999986643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=6.5e-09 Score=93.30 Aligned_cols=184 Identities=12% Similarity=0.060 Sum_probs=147.0
Q ss_pred CChHHHHHHHHhcCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHH
Q 038200 268 QKVEVAQRVFDSMAD----RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTE 343 (523)
Q Consensus 268 ~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (523)
+..++|..+|++..+ .+...|...+..+...|+.+.|..+|+++.... .......|...+..+.+.|+.+.
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~-----~~~~~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-----DIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-----SSCTHHHHHHHHHHHHHHHCHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHcCChHH
Confidence 346788888887643 355678888899999999999999999999854 12224578888999999999999
Q ss_pred HHHHHHHhhHhcCCCCChHHHHHHHHH-HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038200 344 GRKYFRQMIDFYKIKPNFAHYWCMANL-YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAK 422 (523)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 422 (523)
|.++|+++.+. .+.+...|...+.. +...|+.+.|..+|+.+... .+.+...|...+..+...|+.+.|..+|+
T Consensus 153 ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---~p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 153 GRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999873 34455555555544 34568999999999999864 34567889999999999999999999999
Q ss_pred HHhhcCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 423 SFVDMDPQDF----SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 423 ~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+++...|.++ ..|...+..-...|+.+.+.++++++.+.
T Consensus 228 ~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 228 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999776544 36778888778889999999999998775
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=4.9e-10 Score=102.21 Aligned_cols=255 Identities=8% Similarity=-0.025 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHH-HHH---HHHH-------HhccccHHHHHHHHHHHHHcCCCCchHHH
Q 038200 189 IMISGYSKSGNPGCSLKLFREMMKSGFRGNDKT-MAS---VLTA-------CGRSARFNEGRSVHGYTVRTSLKPNIILD 257 (523)
Q Consensus 189 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 257 (523)
.++......+..++|++++++..+. .|+..+ |+. ++.. +...|++++|..+++.+.+.. +.+...+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3333333444458999999999874 465443 322 2222 233456888999999998875 3366677
Q ss_pred HHHhhhhhhcC--ChHHHHHHHHhcCC---CChHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 258 TALIDLYSKCQ--KVEVAQRVFDSMAD---RNLVCWN-AMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 258 ~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
..+..++...+ ++++|...+.++.+ ++...+. .....+...+.+++|+..+++++... +-+...|..+
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~------p~~~~a~~~l 184 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN------FSNYSSWHYR 184 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT------CCCHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC------CCCHHHHHHH
Confidence 66666665554 58899999988743 3555554 44467778899999999999998854 3357788888
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
..++...|++++|...++...+. .| .. ..+...+...+..+++...+...... .+++...+..+...+...
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~---~~--~~-~~~~~~~~~l~~~~~a~~~~~~~l~~---~~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENV---LL--KE-LELVQNAFFTDPNDQSAWFYHRWLLG---RAEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHH---HH--HH-HHHHHHHHHHCSSCSHHHHHHHHHHS---CCCCSSSCCCCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHh---HH--HH-HHHHHHHHHhcchhHHHHHHHHHHHh---CcchhhHHHHHHHHHHHH
Confidence 88899999888877666655552 11 11 12333445556666777777665532 122333444555667778
Q ss_pred CCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 412 GAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
|+.++|...+.+....+|.+..++..++.+|...|++++|.+.+++..+.
T Consensus 256 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.90 E-value=1.1e-08 Score=90.91 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=128.8
Q ss_pred hhhhhhcCChHHHHHHHHhcCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHH
Q 038200 261 IDLYSKCQKVEVAQRVFDSMAD-----RN----LVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGV 331 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~l 331 (523)
...|...+++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|...+++........+.......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 4566677777777777776533 11 24678888888889999999888887665320000011123456666
Q ss_pred HHHHh-hcCcHHHHHHHHHHhhHhcCC---CC-ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCC---CchH-HHHH
Q 038200 332 ICACV-RAELLTEGRKYFRQMIDFYKI---KP-NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNM---SFES-IMWV 402 (523)
Q Consensus 332 l~~~~-~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~-~~~~ 402 (523)
...|. ..|++++|...+++..+.+.. ++ -..++..+...|...|++++|.+.++++....... .... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66664 469999999999988653211 11 13557788999999999999999999866432111 1121 2334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCh-----hhHHHHHHHHHh--cCChhHHHHHHHHH
Q 038200 403 SLLSLCRFQGAVAMVERLAKSFVDMDPQDF-----SRYQFLLNVYAV--AGQWEDVARVRELM 458 (523)
Q Consensus 403 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~~~~--~g~~~~A~~~~~~m 458 (523)
..+..+...|+.+.|...++++.+.+|.-+ .....|+.++.. .+++++|+..|+++
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445567788999999999999999887522 244566667665 35678888887644
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=3e-08 Score=82.59 Aligned_cols=116 Identities=9% Similarity=-0.118 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHH
Q 038200 323 PDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMW 401 (523)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ 401 (523)
|+...+......+.+.|++++|+..|+++.+. .+.++..|..+..+|.+.|++++|+..|+++++ +.| +...|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~----l~p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE----LDGQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----SCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH----hCCCcHHHH
Confidence 55666666667777777777777777777663 344566677777777777777777777777764 344 35566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 402 VSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 402 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
..+..++...|++++|...++++.+++|++...+...+..+..
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 6677777777777777777777777666544444444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=6.2e-08 Score=72.43 Aligned_cols=103 Identities=12% Similarity=-0.014 Sum_probs=51.6
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
..+...|++++|+..|+++.+. -+.++..|..+..+|...|++++|++.+.++.+. .+.+...|..+..++...|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHh---ccchhhHHHHHHHHHHHcc
Confidence 3444555555555555555542 2333445555555555555555555555555432 1223444455555555555
Q ss_pred CHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 413 AVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 413 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
++++|...++++++.+|+++.++..+.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5555555555555555555544444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=7.2e-08 Score=72.05 Aligned_cols=93 Identities=12% Similarity=0.027 Sum_probs=84.3
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhc
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVA 445 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 445 (523)
.-...+.+.|++++|+..|+++++. .+.+...|..+..++...|++++|...++++++++|+++..|..++.+|...
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence 3467788999999999999999864 3446778899999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 038200 446 GQWEDVARVRELMKKR 461 (523)
Q Consensus 446 g~~~~A~~~~~~m~~~ 461 (523)
|++++|+..|++..+.
T Consensus 85 ~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=4e-07 Score=74.66 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=91.1
Q ss_pred hhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCc
Q 038200 261 IDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAEL 340 (523)
Q Consensus 261 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 340 (523)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld------p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD------KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh------hhhhhhHHHHHHHHHhhcc
Confidence 3445667778888888887777777777777778888888888888888877743 2235677777777777888
Q ss_pred HHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHH
Q 038200 341 LTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVER 419 (523)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 419 (523)
+++|...|++.... .+.+... .+.. + +....++ ..++..+..++...|++++|.+
T Consensus 86 ~~~A~~~~~kAl~~--~~~n~~~------~~~~-------------~---~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQ--LRGNQLI------DYKI-------------L---GLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEE------ECGG-------------G---TBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccCchH------HHHH-------------h---hhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 88887777777652 2222100 0000 0 0001121 3445566667788888888888
Q ss_pred HHHHHhhcCCCC
Q 038200 420 LAKSFVDMDPQD 431 (523)
Q Consensus 420 ~~~~~~~~~p~~ 431 (523)
.++.+.++.|..
T Consensus 142 ~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 142 QLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTCCSG
T ss_pred HHHHHHhcCCCc
Confidence 888888877753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=2.1e-07 Score=82.38 Aligned_cols=141 Identities=11% Similarity=-0.057 Sum_probs=69.1
Q ss_pred HHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-----
Q 038200 288 WNAMILGHCI-HGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN----- 360 (523)
Q Consensus 288 ~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 360 (523)
+..+...|.. .|++++|++.+++..+..... +..+. ..++..+...+...|++++|...|+++.......+.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~-~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQD-QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 4444444433 466666666666554311000 01111 234566667777777777777777776653111111
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc--hHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhcCC
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF--ESIMWVSLLSLCRF--QGAVAMVERLAKSFVDMDP 429 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~p 429 (523)
...+...+..+...|+++.|.+.+++..+....+.. .......++.++.. .+.+++|...|+.+.+++|
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 112334444556677777777777777653221111 12233444554433 2335666666655554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.7e-07 Score=74.55 Aligned_cols=121 Identities=13% Similarity=-0.025 Sum_probs=99.3
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLC 408 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 408 (523)
......|.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|.+.|+++++. .+.+...|..+..++
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHH
Confidence 33456788999999999999999984 3456888999999999999999999999999863 233567888889999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH--hcCChhHHHHH
Q 038200 409 RFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA--VAGQWEDVARV 454 (523)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 454 (523)
...|++++|...++++..++|+++.++..+..+.. ..+.+++|...
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988887766643 44556666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.63 E-value=6.4e-08 Score=71.63 Aligned_cols=89 Identities=10% Similarity=-0.099 Sum_probs=80.9
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh
Q 038200 366 CMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV 444 (523)
Q Consensus 366 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 444 (523)
.+...+.+.|++++|...|++.+.. .| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 4677788999999999999998863 44 578888888999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHH
Q 038200 445 AGQWEDVARVRELM 458 (523)
Q Consensus 445 ~g~~~~A~~~~~~m 458 (523)
.|++++|.+.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=7.7e-08 Score=80.01 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCC-HHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCC-C
Q 038200 283 RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPD-EITFIGVICACVRAELLTEGRKYFRQMIDFYKIKP-N 360 (523)
Q Consensus 283 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 360 (523)
|+...+......|.+.|++++|+..|++.+. ..|+ ...|..+..+|.+.|++++|+..|+++.+ +.| +
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~-------~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~ 71 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT-------RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQS 71 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCc
Confidence 3445556666777777777777777777777 6665 44566677777777777777777777765 233 4
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCC
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMP 388 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 388 (523)
...|..+..+|...|++++|+..|+++.
T Consensus 72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 72 VKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6667777777777777777777777665
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=3.4e-07 Score=75.15 Aligned_cols=123 Identities=10% Similarity=0.043 Sum_probs=94.0
Q ss_pred HHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc
Q 038200 332 ICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ 411 (523)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (523)
...+...|+++.|++.|+++. +|++.+|..+..+|...|++++|++.|++.++. -+.+...|..+..++...
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhh
Confidence 344567788888888887642 356777788888888888888888888888753 133466777777788888
Q ss_pred CCHHHHHHHHHHHhhcCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 412 GAVAMVERLAKSFVDMDPQD----------------FSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 412 g~~~~a~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
|++++|...|++++...|.+ ..++..++.+|.+.|++++|.+.+++..+..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888888887654332 2467789999999999999999999886654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.7e-07 Score=69.02 Aligned_cols=110 Identities=11% Similarity=-0.029 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCCh---HHHHHHHHhCCCCCCCCCch-HHHHHHH
Q 038200 329 IGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELT---EEAEEILRKMPEDNDNMSFE-SIMWVSL 404 (523)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~-~~~~~~l 404 (523)
..++..+...+++++|.+.|++..+. -+.++.++..+..++.+.++. ++|+++++++...+ ..|+ ...+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--~~~~~~~~~~~L 78 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc--CCchHHHHHHHH
Confidence 45778888899999999999999983 455788888999999876655 46999999988531 1232 2367788
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHH
Q 038200 405 LSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVY 442 (523)
Q Consensus 405 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 442 (523)
..+|...|++++|.+.++++++++|++..+...+..+.
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 88999999999999999999999999887666554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.8e-07 Score=73.17 Aligned_cols=96 Identities=16% Similarity=0.027 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 038200 364 YWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYA 443 (523)
Q Consensus 364 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 443 (523)
+......|.+.|++++|+..|+++++. .+.+...|..+...+...|++++|...++++++++|+++.+|..++.+|.
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 334566788999999999999999864 23457888888889999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 038200 444 VAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 444 ~~g~~~~A~~~~~~m~~~~ 462 (523)
..|++++|...+++..+..
T Consensus 90 ~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHcC
Confidence 9999999999999997753
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1e-06 Score=70.59 Aligned_cols=86 Identities=9% Similarity=-0.148 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
.+|..+..+|.+.|++++|+..+++.+.. .| +...+..+..++...|++++|...|+++++++|+++.+...+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~ 138 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALEL----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhc----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45777888999999999999999998863 44 67788888889999999999999999999999999999999988
Q ss_pred HHHhcCChhHH
Q 038200 441 VYAVAGQWEDV 451 (523)
Q Consensus 441 ~~~~~g~~~~A 451 (523)
+..+.+...+.
T Consensus 139 ~~~~~~~~~~~ 149 (170)
T d1p5qa1 139 CQQRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 87776665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=0.00024 Score=60.96 Aligned_cols=224 Identities=7% Similarity=-0.076 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchHHHHH
Q 038200 184 VVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGR----SARFNEGRSVHGYTVRTSLKPNIILDTA 259 (523)
Q Consensus 184 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 259 (523)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...+...+....+.+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence 4455566666666677777777777666654 33344444444433 334555555555544443
Q ss_pred HhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHH
Q 038200 260 LIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHC----IHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICAC 335 (523)
Q Consensus 260 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~ 335 (523)
+......+...+. ...+.+.|...++.....| +.. ....+...+
T Consensus 69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g-------~~~-a~~~l~~~~ 116 (265)
T d1ouva_ 69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-------YAE-GCASLGGIY 116 (265)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHH-HHHHHHHHH
T ss_pred ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhh-------hhh-HHHhhcccc
Confidence 1122222222221 1344555666666655544 111 111111111
Q ss_pred ----hhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHc----CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHH
Q 038200 336 ----VRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAG----AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSL 407 (523)
Q Consensus 336 ----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 407 (523)
........+...+...... .+...+..|...|.. ..+...+...++...+. .+......+...
T Consensus 117 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-----g~~~A~~~lg~~ 187 (265)
T d1ouva_ 117 HDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-----KDSPGCFNAGNM 187 (265)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHH
T ss_pred cCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccc-----cccccccchhhh
Confidence 1233455566666555442 344555556666654 44556666666666532 233344444444
Q ss_pred HHh----cCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 408 CRF----QGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 408 ~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
+.. ..+.+.|..+|+++.+.+ ++..+..|+.+|.+ ..+.++|.+.|++..+.|.
T Consensus 188 y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 188 YHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 443 457888889998887765 46678888888876 3478889999988877764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.36 E-value=4.4e-06 Score=66.59 Aligned_cols=96 Identities=14% Similarity=-0.017 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.+|..+..+|.+.|++++|+..+++++.. .+.+...+..+..++...|++++|...++++++++|+++.+...+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhc---ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667888899999999999999998864 244677888888999999999999999999999999999999988888
Q ss_pred HHhcCChhH-HHHHHHHHHh
Q 038200 442 YAVAGQWED-VARVRELMKK 460 (523)
Q Consensus 442 ~~~~g~~~~-A~~~~~~m~~ 460 (523)
....+...+ ..+++..|.+
T Consensus 142 ~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 142 QKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 777665543 4555655544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=5.1e-06 Score=66.36 Aligned_cols=88 Identities=10% Similarity=-0.122 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 360 NFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
....|..+..+|.+.|++++|+..+.++++. -+.+...|..+..++...|+++.|...++++++++|+++.+...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~---~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI---DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhh---hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556777888999999999999999998864 2345778888888999999999999999999999999988888887
Q ss_pred HHHHhcCChhH
Q 038200 440 NVYAVAGQWED 450 (523)
Q Consensus 440 ~~~~~~g~~~~ 450 (523)
.+..+.....+
T Consensus 153 ~~~~~l~~~~~ 163 (169)
T d1ihga1 153 KVKQKIKAQKD 163 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77655444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.24 E-value=5.8e-06 Score=64.68 Aligned_cols=79 Identities=9% Similarity=-0.043 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHH
Q 038200 362 AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNV 441 (523)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 441 (523)
.+|..+..+|.+.|++++|++.++++++. .+.+...|..+..++...|+++.|...|+++++++|+++.+...+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~---~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc---cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45666777888888888888888887753 233567777788888888888888888888888888877776666554
Q ss_pred HH
Q 038200 442 YA 443 (523)
Q Consensus 442 ~~ 443 (523)
..
T Consensus 145 ~~ 146 (153)
T d2fbna1 145 VN 146 (153)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=0.0011 Score=58.17 Aligned_cols=136 Identities=10% Similarity=0.089 Sum_probs=65.4
Q ss_pred CCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 038200 84 MPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGH 163 (523)
Q Consensus 84 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 163 (523)
.||..-...+...|.+.|.++.|..++..+ .-|..++.++.+.+++..|.+++.+.. +..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 355555556666677777777777776533 234556666677777777766665542 444666666666
Q ss_pred HhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 038200 164 VRSGDMSAAHELFDIMPERNVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDKTMASVLTACGRS 232 (523)
Q Consensus 164 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 232 (523)
.+......+.-+ ......+......++..|-..|.+++...++...... -..+...++.++..|++.
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 655555443221 1111123333445666666666666666666655432 133444555566555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.7e-07 Score=86.56 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 361 FAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
...+..+...+.+.|+.++|...+++... ..| ...+..+...+...|++++|...|+++.+++|++..+|+.|+.
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCS----YIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAI 194 (497)
T ss_dssp -----------------------CCHHHH----HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhC----CCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 34444455555555555555554444331 111 2234444455555555666666666666666655555666666
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 038200 441 VYAVAGQWEDVARVRELMK 459 (523)
Q Consensus 441 ~~~~~g~~~~A~~~~~~m~ 459 (523)
+|...|+..+|+..|.+..
T Consensus 195 ~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6655566655555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=5e-06 Score=66.39 Aligned_cols=64 Identities=6% Similarity=-0.099 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++..+..+|.+.|++++|...++.+++++|+++.++..++.+|...|++++|...|++..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3566677889999999999999999999999999999999999999999999999999997753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=2.3e-06 Score=64.69 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChh-------hH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFS-------RY 435 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~ 435 (523)
.+..+...+.+.|++++|++.|.+.++. .+.+...+..+..+|...|+++.|...++++++++|+++. +|
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~ 82 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778888999999999999988864 2345778888888999999999999999999998887654 55
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 038200 436 QFLLNVYAVAGQWEDVARVRELMKK 460 (523)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~m~~ 460 (523)
..++..+...+++++|++.|++...
T Consensus 83 ~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5677778888899999999987754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.18 E-value=0.001 Score=56.87 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=69.5
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038200 152 DLISWNSIVSGHVRSGDMSAAHELFDIMPE-RNVVSWNIMISGYSK----SGNPGCSLKLFREMMKSGFRGNDKTMASVL 226 (523)
Q Consensus 152 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 226 (523)
|+..+..+...+.+.+++++|++.|++..+ .+..++..|...|.. ..+...|...+....+.+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 345666777778889999999999999854 567777778888876 668889999999888876 223333333
Q ss_pred HHH----hccccHHHHHHHHHHHHHcCC
Q 038200 227 TAC----GRSARFNEGRSVHGYTVRTSL 250 (523)
Q Consensus 227 ~~~----~~~~~~~~a~~~~~~~~~~~~ 250 (523)
..+ ....+.+.|...++...+.|.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~ 105 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY 105 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh
Confidence 333 235677888888888877663
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.13 E-value=1.2e-05 Score=64.39 Aligned_cols=118 Identities=8% Similarity=-0.012 Sum_probs=82.6
Q ss_pred HHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcC
Q 038200 333 CACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQG 412 (523)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 412 (523)
......|++++|.+.|.+....+.-.+-... ..+.+ +...-..+. ......+..+..++...|
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~------~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALV------EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHH------HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHH------HHHHHHHHHHHHHHHHCC
Confidence 4567778888888888887764221111000 00111 111111111 112346677888899999
Q ss_pred CHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCccCC
Q 038200 413 AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKK-----RRMGRMP 467 (523)
Q Consensus 413 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 467 (523)
++++|...++++++.+|.+...|..++.+|.+.|++.+|++.|+++.+ .|+.|.+
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 999999999999999999999999999999999999999999999854 5776655
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.11 E-value=1.7e-05 Score=61.97 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++..+..+|.+.|++++|...++++++++|.++.+|..++.+|...|++++|+..|++..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4667788889999999999999999999999999999999999999999999999999987753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.05 E-value=1.6e-05 Score=58.28 Aligned_cols=86 Identities=14% Similarity=-0.027 Sum_probs=43.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCCcCC-CHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHH
Q 038200 292 ILGHCIHGKPEEGIKLFTALVNGTVAGGSISP-DEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANL 370 (523)
Q Consensus 292 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (523)
...+.+.|++++|+..|++.+.. .| +...|..+..++.+.|++++|+..|+++.+. .+.+...+..+...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK-------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc-------ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHH
Confidence 34444555555555555555552 23 2445555555555555555555555555542 22234555555555
Q ss_pred HHcCCChHHHHHHHHh
Q 038200 371 YAGAELTEEAEEILRK 386 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~ 386 (523)
|...|++++|++.+++
T Consensus 94 y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 94 HTNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5555555555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=4.1e-05 Score=56.73 Aligned_cols=98 Identities=7% Similarity=-0.002 Sum_probs=68.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCC---hHHHHHHHHhcCCCC--h---HHHHHHHHH
Q 038200 223 ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQK---VEVAQRVFDSMADRN--L---VCWNAMILG 294 (523)
Q Consensus 223 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~---~~~~~li~~ 294 (523)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+.+|+++...+ . .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346667777778888888888887765 3466777777777766544 445788887775522 2 256677788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHH
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITF 328 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~ 328 (523)
|.+.|++++|++.|+++++ +.|+..-.
T Consensus 82 y~~~g~~~~A~~~~~~aL~-------~~P~~~~A 108 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ-------TEPQNNQA 108 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred HHHHhhhHHHHHHHHHHHH-------hCcCCHHH
Confidence 8888888888888888888 45765433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.01 E-value=2.8e-05 Score=61.79 Aligned_cols=64 Identities=6% Similarity=-0.061 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 399 IMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 399 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.++..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|...|++..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3556677788999999999999999999999999999999999999999999999999997753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=2.4e-05 Score=62.25 Aligned_cols=65 Identities=3% Similarity=-0.112 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 397 ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 397 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
....+..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34566777788999999999999999999999999999999999999999999999999999775
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.6e-05 Score=57.21 Aligned_cols=106 Identities=7% Similarity=-0.072 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCC---ch-HHHHHH
Q 038200 328 FIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMS---FE-SIMWVS 403 (523)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~-~~~~~~ 403 (523)
+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|++.++++++...... +. ..++..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344556677777777777777777763 334566777777777777777777777777653210000 11 245666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHH
Q 038200 404 LLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQ 436 (523)
Q Consensus 404 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 436 (523)
+...+...+++++|...+++.+...| ++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 116 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLK 116 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHH
Confidence 66677777888888888888877766 343333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=2.1e-05 Score=60.68 Aligned_cols=113 Identities=8% Similarity=-0.012 Sum_probs=67.1
Q ss_pred cCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC----------CChHHHHHHHHhCCCCCCCCCc-hHHHHHHHHH
Q 038200 338 AELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA----------ELTEEAEEILRKMPEDNDNMSF-ESIMWVSLLS 406 (523)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~ 406 (523)
.+.+++|...|+...+. -+.++..+..+..+|... +.+++|++.|+++++ +.| +...|..+..
T Consensus 10 ~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~----l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL----IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH----hcchhhHHHhhHHH
Confidence 34455555555555552 233444555555444422 334556666666654 233 3455555555
Q ss_pred HHHhcC-----------CHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038200 407 LCRFQG-----------AVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 407 ~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 463 (523)
+|...| .++.|.+.|+++++++|++...+..|... .+|.+++.+..+.|+
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 554433 36889999999999999887666666555 356677777766664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.0074 Score=52.74 Aligned_cols=173 Identities=10% Similarity=-0.008 Sum_probs=106.0
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCchHHHHHHHHHHHhCCCCCchHHHHH
Q 038200 49 NPGTFCVNAVIKAYSNSCVPDQGVVFYLQMIKNGFMPNSYTFVSLFGSCAKTGCVERGGMCHGLALKNGVDFELPVMNSL 128 (523)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (523)
.+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.++.... + +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHH
Confidence 45655556677888899999999999986653 788888889999999988776543 2 67788888
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCC---CCChhHHHHHHHHHHhcCCchHHHH
Q 038200 129 INMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMP---ERNVVSWNIMISGYSKSGNPGCSLK 205 (523)
Q Consensus 129 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~ 205 (523)
...+.+......|.-+ ......+......++..|-..|.++....+++... ..+...++-++..|++.+ .++.++
T Consensus 76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 8888888777665332 22222344555678888999999999999998753 356677888988888764 444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHH
Q 038200 206 LFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGY 244 (523)
Q Consensus 206 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 244 (523)
.++.. + +..-...++..|.+.+-+.++.-++..
T Consensus 154 ~l~~~---s---~~y~~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 154 HLELF---W---SRVNIPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp HHHHH---S---TTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHhc---c---ccCCHHHHHHHHHHcCChHHHHHHHHh
Confidence 44332 1 112223455666666666555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.2e-06 Score=78.55 Aligned_cols=220 Identities=7% Similarity=-0.111 Sum_probs=106.7
Q ss_pred HHHHHHhcCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccccHHHHHHHHHHHH
Q 038200 171 AAHELFDIMPE--R-NVVSWNIMISGYSKSGNPGCSLKLFREMMKSGFRGNDK-TMASVLTACGRSARFNEGRSVHGYTV 246 (523)
Q Consensus 171 ~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 246 (523)
+|.+.|++..+ | ...++..+..++...+++++| |++++.. .|+.. .++... .+ -...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~-~L-w~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ-DL-WNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH-HH-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH-HH-HHHHHHHHHHHHHHhc
Confidence 45566666543 3 234555666677777777665 5555543 22211 111100 00 0112344555566555
Q ss_pred HcCCCCchHHHHH--HhhhhhhcCChHHHHHHHHhcCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q 038200 247 RTSLKPNIILDTA--LIDLYSKCQKVEVAQRVFDSMAD---RNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSI 321 (523)
Q Consensus 247 ~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 321 (523)
+....++..-... +...+...+.++.++..+..... ++...+..+...+.+.|+.++|...+......
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------- 149 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY------- 149 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH-------
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC-------
Confidence 5433333221111 11122334556666666655433 34456677777777788888887777666542
Q ss_pred CCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHH
Q 038200 322 SPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMW 401 (523)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 401 (523)
.| ..++..+...+...|++++|...|+++.+. .+-+...|+.|...+...|+..+|...|.+.... .+|-...+
T Consensus 150 ~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~---~~~~~~a~ 223 (497)
T d1ya0a1 150 IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV---KFPFPAAS 223 (497)
T ss_dssp HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS---SBCCHHHH
T ss_pred CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCHHHH
Confidence 12 245666777778888888888888888773 3345677888888888888888888888877753 24556666
Q ss_pred HHHHHHHHh
Q 038200 402 VSLLSLCRF 410 (523)
Q Consensus 402 ~~l~~~~~~ 410 (523)
..|...+.+
T Consensus 224 ~nL~~~~~~ 232 (497)
T d1ya0a1 224 TNLQKALSK 232 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=7.1e-05 Score=52.63 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhCCCCC----CCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHH
Q 038200 363 HYWCMANLYAGAELTEEAEEILRKMPEDN----DNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFL 438 (523)
Q Consensus 363 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 438 (523)
.+-.+...+.+.|++++|...|++..+.. ........++..+..++.+.|++++|...++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34457777888888888888877765321 11122356788889999999999999999999999999999888877
Q ss_pred HHH
Q 038200 439 LNV 441 (523)
Q Consensus 439 ~~~ 441 (523)
...
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=5e-05 Score=64.91 Aligned_cols=130 Identities=11% Similarity=0.028 Sum_probs=79.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCC-hHHHHHHHHHHHc
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPN-FAHYWCMANLYAG 373 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 373 (523)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+. .|+ ...+..+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS------PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA 76 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHh
Confidence 345688888888888888854 335677778888888888888888888888763 343 4444444444444
Q ss_pred CCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhH
Q 038200 374 AELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRY 435 (523)
Q Consensus 374 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 435 (523)
.+..+++..-...... .+-+++...+......+...|+.++|...++++.+..|..+..+
T Consensus 77 ~~~~~~a~~~~~~~~~--~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 77 AQARKDFAQGAATAKV--LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHTTSCCCEEC--CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ccccHHHHHHhhhhhc--ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4444443332222111 11122333444445566777888888888888888777655443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.70 E-value=4.1e-05 Score=59.90 Aligned_cols=94 Identities=13% Similarity=-0.063 Sum_probs=63.9
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCC---------chHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-------C-
Q 038200 368 ANLYAGAELTEEAEEILRKMPEDNDNMS---------FESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDP-------Q- 430 (523)
Q Consensus 368 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-------~- 430 (523)
...+...|++++|++.|++.++.....+ .....|+.+..++...|++++|...+++++++.| +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344455666666666665543211110 0245677777788888888888888888876432 1
Q ss_pred ---ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 431 ---DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 431 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
...++..++.+|...|++++|+..|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1236788999999999999999999987664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.00059 Score=54.19 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=83.1
Q ss_pred HHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHH
Q 038200 226 LTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGI 305 (523)
Q Consensus 226 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 305 (523)
.......|++++|.+.|...+...-.+ . +......+-+...-..+.......+..+...+...|++++|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~-~---------l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGP-V---------LDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSS-T---------TGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccc-c---------cccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 345667788888888888777642111 0 000011111111111222223456788899999999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhH----hcCCCCChHHH
Q 038200 306 KLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMID----FYKIKPNFAHY 364 (523)
Q Consensus 306 ~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 364 (523)
..+++++... +-+...|..++.+|...|+..+|++.|+++.. ..|+.|+..+-
T Consensus 88 ~~~~~al~~~------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 88 AELEALTFEH------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHS------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999953 34678999999999999999999999998744 25899987653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.48 E-value=3.8e-05 Score=59.08 Aligned_cols=74 Identities=8% Similarity=-0.045 Sum_probs=58.8
Q ss_pred HHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCCChhhHHHHHH
Q 038200 371 YAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQ----------GAVAMVERLAKSFVDMDPQDFSRYQFLLN 440 (523)
Q Consensus 371 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 440 (523)
|-+.+.+++|.+.|+...+. -+.+...+..+..++... +.+++|...++++++++|+++.+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence 44566799999999999864 234566777777666543 44688999999999999999999999999
Q ss_pred HHHhcCC
Q 038200 441 VYAVAGQ 447 (523)
Q Consensus 441 ~~~~~g~ 447 (523)
+|...|+
T Consensus 84 ~y~~~g~ 90 (145)
T d1zu2a1 84 AYTSFAF 90 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHccc
Confidence 9988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=9.8e-05 Score=63.03 Aligned_cols=122 Identities=14% Similarity=0.058 Sum_probs=87.2
Q ss_pred HhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCC
Q 038200 335 CVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGA 413 (523)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 413 (523)
..+.|++++|+..+++..+ .-+-+...+..++..|+..|++++|.+.++...+ ..|+ ...+..+...+...+.
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~----l~P~~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEYLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHhccc
Confidence 4567999999999999998 4566789999999999999999999999999985 4565 4444444444443333
Q ss_pred HHHHHHHHHHHhh-cCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038200 414 VAMVERLAKSFVD-MDPQDFSRYQFLLNVYAVAGQWEDVARVRELMKKRR 462 (523)
Q Consensus 414 ~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 462 (523)
.+++......... .+|++...+...+..+...|++++|...++++.+..
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3332222111111 234344455566788889999999999999997763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.33 E-value=0.00056 Score=53.10 Aligned_cols=104 Identities=15% Similarity=-0.013 Sum_probs=70.3
Q ss_pred HHHHH--HHHHhhcCcHHHHHHHHHHhhHhcCCCCC----------hHHHHHHHHHHHcCCChHHHHHHHHhCCCCC---
Q 038200 327 TFIGV--ICACVRAELLTEGRKYFRQMIDFYKIKPN----------FAHYWCMANLYAGAELTEEAEEILRKMPEDN--- 391 (523)
Q Consensus 327 ~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 391 (523)
+|..+ ...+...|++++|+..|++..+...-.|+ ..+|+.+..+|...|++++|.+.+++.+...
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 34455667788888888777664222222 3567788888999999998888877765210
Q ss_pred CCCCc-----hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 038200 392 DNMSF-----ESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ 430 (523)
Q Consensus 392 ~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 430 (523)
....+ ....+..+..+|...|++++|...|++++++.|.
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 00111 1235667788899999999999999999987553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00056 Score=47.78 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 400 MWVSLLSLCRFQGAVAMVERLAKSFVDMDPQ-------DFSRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 400 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
.+..+...+.+.|+++.|...+++++++.|. ...++..|+.+|.+.|++++|+..+++..+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3456777899999999999999999986543 2467999999999999999999999999775
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.31 E-value=0.098 Score=36.99 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=103.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 295 HCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 295 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
+...|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+.|.+.| +
T Consensus 12 ~ildG~ve~Gveii~k~~~s--------s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C 69 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS--------STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------C 69 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--------SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------C
T ss_pred HHHhhhHHhHHHHHHHHccc--------CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------h
Confidence 55678999999999998874 3566778888777777888888888888877554444 3
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHHHHHHhcCChhHHHHH
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLLNVYAVAGQWEDVARV 454 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (523)
++.......+-.+-. +...+...+.....+|+-+.-..+++.+.+.+..+|.....++.+|.+.|...++.++
T Consensus 70 ~Nlk~vv~C~~~~n~-------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nel 142 (161)
T d1wy6a1 70 QNLKSVVECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 142 (161)
T ss_dssp SCTHHHHHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcHHHHHHHHHHhcc-------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 344444444433331 1223445566778889999999999987776666888999999999999999999999
Q ss_pred HHHHHhCCCc
Q 038200 455 RELMKKRRMG 464 (523)
Q Consensus 455 ~~~m~~~~~~ 464 (523)
+.+.-++|++
T Consensus 143 l~~ACe~G~K 152 (161)
T d1wy6a1 143 LIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHHhHH
Confidence 9999888864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.47 Score=43.15 Aligned_cols=116 Identities=11% Similarity=0.042 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcCCCHHHHH----HHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcC
Q 038200 299 GKPEEGIKLFTALVNGTVAGGSISPDEITFI----GVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGA 374 (523)
Q Consensus 299 g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (523)
.+.+.+..++....... ..+..... .+.......+..+.+..++...... + .+.....-.+......
T Consensus 228 ~d~~~a~~~l~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ------QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGT 298 (450)
T ss_dssp HCHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHhhhhcc------cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHHHHHHHHHc
Confidence 46777777777766543 12222221 2222333455667777777666553 2 2334444445555666
Q ss_pred CChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038200 375 ELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVD 426 (523)
Q Consensus 375 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 426 (523)
+++..+...+..+... ......-..=+..++...|+.+.|..++..+..
T Consensus 299 ~~~~~~~~~~~~l~~~---~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 299 GDRRGLNTWLARLPME---AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp TCHHHHHHHHHHSCTT---GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHhcCcc---cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7888888888887632 112233333445667778888888888887764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.76 Score=41.67 Aligned_cols=274 Identities=8% Similarity=-0.082 Sum_probs=144.3
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhcCCCCChhHHHHHHHHHHh--cC
Q 038200 121 ELPVMNSLINMYGCFGAMDCARNMFVQMSPRDLISWNSIVSGHVRSGDMSAAHELFDIMPERNVVSWNIMISGYSK--SG 198 (523)
Q Consensus 121 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~ 198 (523)
+...+-.-+......|+...|..++..+...........+........+ ........ .+......+..++.+ ..
T Consensus 153 t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~~~~~~l~rla~~ 228 (450)
T d1qsaa1 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAVAFASVARQ 228 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhHHHHHHHHHHhcc
Confidence 3334444444555567777777777666544444445555544332222 22222222 122222222222222 34
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhhcCChHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTM----ASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSKCQKVEVAQ 274 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 274 (523)
+.+.+..++........ .+.... ..+.......+..+.+...+......+. +.......+......+++..+.
T Consensus 229 d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~ 305 (450)
T d1qsaa1 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLN 305 (450)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHH
Confidence 67778888777665432 222222 1222333445666777777766665543 3333344445556678888888
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHh
Q 038200 275 RVFDSMADR---NLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQM 351 (523)
Q Consensus 275 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (523)
..+..+... .....-=+..++...|+.+.|...|..+... ++ |-..+.+- +.|..- .+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~--------~~---fYG~LAa~-~Lg~~~-------~~ 366 (450)
T d1qsaa1 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ--------RG---FYPMVAAQ-RIGEEY-------EL 366 (450)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CS---HHHHHHHH-HTTCCC-------CC
T ss_pred HHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC--------CC---hHHHHHHH-HcCCCC-------CC
Confidence 888888652 1223344567778888888888888887542 32 33332221 111100 00
Q ss_pred hHhcCCCC--Ch----HHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038200 352 IDFYKIKP--NF----AHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFV 425 (523)
Q Consensus 352 ~~~~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 425 (523)
... ..++ .. ..-..-+..+...|+...|...+..+... ..++ ....+.....+.|.++.|.....++.
T Consensus 367 ~~~-~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~--~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 367 KID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKT--EQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHH--HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CcC-CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHH--HHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000 0000 00 00112355677889999999888877743 3333 33455666788899998888877764
Q ss_pred h
Q 038200 426 D 426 (523)
Q Consensus 426 ~ 426 (523)
.
T Consensus 441 ~ 441 (450)
T d1qsaa1 441 L 441 (450)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.36 E-value=0.13 Score=37.60 Aligned_cols=111 Identities=9% Similarity=-0.033 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHhhHhcCCCCChHHHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHh----cCCHH
Q 038200 340 LLTEGRKYFRQMIDFYKIKPNFAHYWCMANLYAGAELTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRF----QGAVA 415 (523)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 415 (523)
++++|.++|++..+. +. +.....|. .....+.++|++++++..+.+ ++.....+...|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~~-g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g-----~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-NE---MFGCLSLV--SNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHT-TC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHC-CC---hhhhhhhc--cccccCHHHHHHHHhhhhccc-----chhhhhhHHHhhhhccccchhhH
Confidence 567777777777664 32 22222232 234457788888888776432 22333334444433 45688
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 038200 416 MVERLAKSFVDMDPQDFSRYQFLLNVYAV----AGQWEDVARVRELMKKRRM 463 (523)
Q Consensus 416 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 463 (523)
+|.++++++.+.+ ++.+...|+.+|.. ..+.++|.++|++..+.|.
T Consensus 77 ~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 77 KAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888888887754 46678888888876 4578889999888877764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.24 E-value=0.16 Score=37.22 Aligned_cols=109 Identities=6% Similarity=-0.049 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchHHHHHHhhhhhh----cCChHHHH
Q 038200 199 NPGCSLKLFREMMKSGFRGNDKTMASVLTACGRSARFNEGRSVHGYTVRTSLKPNIILDTALIDLYSK----CQKVEVAQ 274 (523)
Q Consensus 199 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 274 (523)
++++|+.+|++..+.|. +. ....+. .....+.++|...+++..+.| +...+..|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56777777777777652 22 222222 234456777888887777765 33444445555543 34577777
Q ss_pred HHHHhcCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 038200 275 RVFDSMAD-RNLVCWNAMILGHCI----HGKPEEGIKLFTALVNGT 315 (523)
Q Consensus 275 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 315 (523)
++|++..+ .++.....|...|.. ..+..+|..+|++..+.|
T Consensus 80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77777654 345555556555554 356777888887777766
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.12 E-value=0.33 Score=34.28 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=51.6
Q ss_pred hcCChHHHHHHHHhcCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHH
Q 038200 266 KCQKVEVAQRVFDSMADRNLVCWNAMILGHCIHGKPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGR 345 (523)
Q Consensus 266 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (523)
.++++......+-.+-. +.......+..+..+|+-+.-.++++.+.+.+ +|++.....+..+|.+.|...++-
T Consensus 68 ~C~Nlk~vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~------~i~~~~llkia~A~kkig~~re~n 140 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN------EVSASILVAIANALRRVGDERDAT 140 (161)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C------CSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHhcchhhHH
Confidence 34444444444444433 23334555666677777777777777766654 666777777777777777777777
Q ss_pred HHHHHhhHhcCC
Q 038200 346 KYFRQMIDFYKI 357 (523)
Q Consensus 346 ~~~~~~~~~~~~ 357 (523)
+++.++-+. |+
T Consensus 141 ell~~ACe~-G~ 151 (161)
T d1wy6a1 141 TLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHT-TC
T ss_pred HHHHHHHHH-hH
Confidence 777777664 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.27 Score=34.96 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHcCC---ChHHHHHHHHhCCCCCCCCCch-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhh
Q 038200 359 PNFAHYWCMANLYAGAE---LTEEAEEILRKMPEDNDNMSFE-SIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSR 434 (523)
Q Consensus 359 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 434 (523)
|++.+--....++.++. +.++++.+++++... .+.+ ...+..+..+|.+.|++++|.++++.+++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 45556555666676654 446788899888742 1223 3466677778999999999999999999999988754
Q ss_pred H
Q 038200 435 Y 435 (523)
Q Consensus 435 ~ 435 (523)
.
T Consensus 110 ~ 110 (124)
T d2pqrb1 110 G 110 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.84 E-value=0.15 Score=36.32 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=52.0
Q ss_pred chHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhcCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038200 396 FESIMWVSLLSLCRFQ---GAVAMVERLAKSFVDMDPQDF-SRYQFLLNVYAVAGQWEDVARVRELMKKR 461 (523)
Q Consensus 396 ~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 461 (523)
+...+--....++.++ .+.++|..+++.+.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4444545555566554 457799999999998888654 68889999999999999999999999664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.34 E-value=1.3 Score=29.50 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHHHHhhcCcHHHHHHHHHHhhHhcCCCCChHHHHHHHH
Q 038200 300 KPEEGIKLFTALVNGTVAGGSISPDEITFIGVICACVRAELLTEGRKYFRQMIDFYKIKPNFAHYWCMAN 369 (523)
Q Consensus 300 ~~~~a~~~~~~m~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 369 (523)
+.-+..+-++.+.... ..|++....+.+.+|.+.+++..|.++|+.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~D-----lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYD-----LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSS-----BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-----cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 4556677777777776 8899999999999999999999999999999875 3344556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.06 E-value=3.8 Score=27.20 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCChhhHHHHH
Q 038200 376 LTEEAEEILRKMPEDNDNMSFESIMWVSLLSLCRFQGAVAMVERLAKSFVDMDPQDFSRYQFLL 439 (523)
Q Consensus 376 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 439 (523)
+.=++.+-++.+. +...-|++.+..+.+.+|++.+++..|.++++.+...--++...|..++
T Consensus 21 D~we~rrgmN~l~--~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLV--GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHT--TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHh--ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445555566655 3347888889999999999999999999999988764322344666554
|