Citrus Sinensis ID: 038206
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WQW5 | 638 | Pentatricopeptide repeat- | yes | no | 0.951 | 0.915 | 0.667 | 0.0 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.913 | 0.942 | 0.423 | 1e-131 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.916 | 0.933 | 0.4 | 1e-127 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.938 | 0.929 | 0.392 | 1e-127 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.884 | 0.732 | 0.432 | 1e-125 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.926 | 0.880 | 0.377 | 1e-123 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.910 | 0.884 | 0.398 | 1e-122 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 0.828 | 0.888 | 0.397 | 1e-121 | |
| Q9C6T2 | 606 | Pentatricopeptide repeat- | no | no | 0.920 | 0.932 | 0.377 | 1e-119 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.915 | 0.918 | 0.384 | 1e-119 |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
N+H + S C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRV
Sbjct: 46 NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 105
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F
Sbjct: 106 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
FS+GKQ H I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
A V+FGE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD +
Sbjct: 226 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 285
Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 286 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 345
Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
+V E+ PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 346 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 405
Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G
Sbjct: 406 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 465
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 466 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 525
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
TKQIY L +ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 526 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 585
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 586 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/576 (42%), Positives = 355/576 (61%), Gaps = 15/576 (2%)
Query: 45 SMSQLKQIHAQALRTAL----PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP-NSF 99
S+++L+QIHA ++R + + K L+ Y ++ S + YA +VF +IE P N F
Sbjct: 29 SITKLRQIHAFSIRHGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86
Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
WNTLIR A + A L++ M G V PD HT+PF +KA + G+ H+
Sbjct: 87 IWNTLIRGYAE-IGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145
Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
+ + G S +Y+ NSL+H YA+CG + A KVFD M E+ LV+WN +I+ F + G+ +
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
AL L+ M +PDG+T S+ SACA + L+LG H Y+++ L ++ +N
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV---GLTRNLHSSNV 262
Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
L+D+Y +CG ++ A+ +F+ M ++ SW S+I+G A++G + A++ F + E P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322
Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
ITFVG+L AC+H GMV EG +YF M EY I P +EH+GC+VDLLARAG + +A
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382
Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
+ +MPM+P+ VIWR+LL AC H L+E Q+++ E SG YVLLS +YAS +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACT-VHGDSDLAEFARIQILQLEPN-HSGDYVLLSNMYASEQ 440
Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
RW+DV +RK M GV K PG S +E+ HEF GD SHPQ+ IY L + +L+
Sbjct: 441 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500
Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
S GY P S VD ++ K++++ HSE++AIA +++ PI V KNLRVC DCH
Sbjct: 501 SEGYVPQISN-VYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCH 559
Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
KL+S+++N EI+VRDR+RFHHFK+GSCSC DYW
Sbjct: 560 LAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/580 (40%), Positives = 359/580 (61%), Gaps = 17/580 (2%)
Query: 40 LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA----DLDYAFRVFYQIEN 95
+++C S+ +L QI A A+++ + + + +++I+F + + + YA +F +
Sbjct: 36 ISKCNSLRELMQIQAYAIKSHI----EDVSFVAKLINFCTESPTESSMSYARHLFEAMSE 91
Query: 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155
P+ +N++ R +R + + LF ++E G +LPD +TFP LKACA A +G+
Sbjct: 92 PDIVIFNSMARGYSRFTNPL-EVFSLFVEILEDG-ILPDNYTFPSLLKACAVAKALEEGR 149
Query: 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFG 215
Q H K GL +VY+ +LI+ Y C +D A VFD ++E +V +N MI + +
Sbjct: 150 QLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRN 209
Query: 216 EFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274
+ AL LFR MQ + +P+ T S+ S+CA L +L LG W H Y +H S V
Sbjct: 210 RPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKH---SFCKYVK 266
Query: 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334
VN +LIDM+ KCGSLD A +FE M +D +W+++I+ +A HG+AE ++ F+R+ E
Sbjct: 267 VNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR-SE 325
Query: 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394
+ P+ ITF+G+L+AC+H G V EGR YF M++++ I P ++HYG +VDLL+RAGN+++
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLED 385
Query: 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454
A + +P+ P ++WR LL A C H ++ L+E+V++++ E + G YV+LS +Y
Sbjct: 386 AYEFIDKLPISPTPMLWRILL-AACSSHNNLDLAEKVSERIFELDDSH-GGDYVILSNLY 443
Query: 455 ASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLID 514
A ++W V +RK+M D+ K PGCSSIE++ + HEFF+GD T +++ LD +
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503
Query: 515 EKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
++LK GY PD S + D K+ +LR HSE+LAI G+LN PG IRV KNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563
Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
+DCH KLIS IF ++++RD RFHHF+DG CSC D+W
Sbjct: 564 RDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/617 (39%), Positives = 360/617 (58%), Gaps = 41/617 (6%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFAD-LDYAFRV 89
+N +S L C +LKQIHA+ L+T L Q + + ++ +D L YA V
Sbjct: 12 HNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIV 71
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F + P++F WN +IR + S D ++++L+QRM+ + + +TFP LKAC+ L
Sbjct: 72 FDGFDRPDTFLWNLMIRGFSCS-DEPERSLLLYQRML-CSSAPHNAYTFPSLLKACSNLS 129
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
AF + Q HA I K G +DVY NSLI+ YA G+ LA+ +FD + E VSWN +I
Sbjct: 130 AFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIK 189
Query: 210 AFVQFGEFDSALKLFRRM-------------------------QIL-------FEPDGYT 237
+V+ G+ D AL LFR+M Q+ EPD +
Sbjct: 190 GYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVS 249
Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
+ SACA L L G W H+Y+ + + D ++ LIDMY KCG ++ A +VF+
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKT---RIRMDSVLGCVLIDMYAKCGEMEEALEVFK 306
Query: 298 SMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357
++ K+ + +W ++I G+A HG A+ F + + PN ITF VL+AC++ G+V
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ-KMGIKPNVITFTAVLTACSYTGLVE 365
Query: 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417
EG+ F M +YN+ P +EHYGC+VDLL RAG +DEA + MP+KP+AVIW +LL A
Sbjct: 366 EGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425
Query: 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477
C + H ++ L EE+ + +I + G YV + ++A ++W+ R+LM ++GV K
Sbjct: 426 C-RIHKNIELGEEIGEILIAIDP-YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAK 483
Query: 478 EPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD 537
PGCS+I ++G HEF AGD SHP+ ++I ++ KL+ GY P+ + + DD
Sbjct: 484 VPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDD 543
Query: 538 GKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDR 597
+++ + HSE+LAI G++ KPG IR+ KNLRVCKDCH+VTKLIS+I+ +I++RDR
Sbjct: 544 EREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDR 603
Query: 598 ARFHHFKDGSCSCMDYW 614
RFHHF+DG CSC DYW
Sbjct: 604 TRFHHFRDGKCSCGDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/552 (43%), Positives = 343/552 (62%), Gaps = 9/552 (1%)
Query: 65 HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
H+ ++ Y+ +I +AS ++ A ++F +I + +WN +I A + + K +A+ LF+
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK-EALELFK 255
Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
M++ NV PD+ T + ACA + G+Q H I G S++ I N+LI Y+ C
Sbjct: 256 DMMKT-NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 314
Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
G L+ A +F+ + + ++SWN +I + + AL LF+ M E P+ T SI
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374
Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
ACA L + +G W H YI + + + SLIDMY KCG ++ A QVF S+ +
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLK-GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHK 433
Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
L+SWN++I GFA+HGRA+A+ F R+ + P+ ITFVG+LSAC+H GM+ GR
Sbjct: 434 SLSSWNAMIFGFAMHGRADASFDLFSRMR-KIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422
F M +Y +TP LEHYGC++DLL +G EA +++ M M+PD VIW SLL AC K H
Sbjct: 493 FRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC-KMH 551
Query: 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCS 482
+V L E A+ +I+ E G YVLLS +YASA RWN+V R L+ DKG+ K PGCS
Sbjct: 552 GNVELGESFAENLIKIEPE-NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCS 610
Query: 483 SIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSS 542
SIEID + HEF GD HP+ ++IYG L+ ++ L+ G+ PD S+ E ++ K+ +
Sbjct: 611 SIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEME-EEWKEGA 669
Query: 543 LRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHH 602
LR HSE+LAIA G+++ KPG + + KNLRVC++CHE TKLIS+I+ EII RDR RFHH
Sbjct: 670 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729
Query: 603 FKDGSCSCMDYW 614
F+DG CSC DYW
Sbjct: 730 FRDGVCSCNDYW 741
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/631 (37%), Positives = 357/631 (56%), Gaps = 62/631 (9%)
Query: 36 LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADL-----DYAFRVF 90
L + C+++ L QIHA +++ Q + L + I+ F + +DL DYA ++F
Sbjct: 26 LFPQINNCRTIRDLSQIHAVFIKSG---QMRDTLAAAEILRFCATSDLHHRDLDYAHKIF 82
Query: 91 YQIENPNSFTWNTLIRACARSVDAKPQ-AIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
Q+ N F+WNT+IR + S + K AI LF M+ V P++ TFP LKACA
Sbjct: 83 NQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTG 142
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD---------------------- 187
+GKQ H K G D ++ ++L+ Y CG +
Sbjct: 143 KIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRR 202
Query: 188 -----------------------LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLF 224
A +FD M +RS+VSWN MI + G F A+++F
Sbjct: 203 KRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVF 262
Query: 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283
R M+ P+ T S+ A + L +L LG W H Y D + D ++ ++LIDMY
Sbjct: 263 REMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAE---DSGIRIDDVLGSALIDMY 319
Query: 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343
KCG ++ A VFE +P+ ++ +W+++I GFA+HG+A A+ F ++ + P+ + +
Sbjct: 320 SKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR-QAGVRPSDVAY 378
Query: 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403
+ +L+AC+H G+V EGR YF M++ + P +EHYGC+VDLL R+G +DEA + NMP
Sbjct: 379 INLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMP 438
Query: 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463
+KPD VIW++LL AC + +V + + VA +++ SG YV LS +YAS W++V
Sbjct: 439 IKPDDVIWKALLGAC-RMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEV 496
Query: 464 GLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYT 523
+R M +K + K+PGCS I+IDG+ HEF D SHP+ K+I L I +KL+ GY
Sbjct: 497 SEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYR 556
Query: 524 PDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKL 583
P +Q + E +D K++ L HSE++A A G+++ PG PIR+ KNLR+C+DCH KL
Sbjct: 557 PITTQVLLNLEEED-KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKL 615
Query: 584 ISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
IS+++ +I VRDR RFHHF+DGSCSCMDYW
Sbjct: 616 ISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/613 (39%), Positives = 352/613 (57%), Gaps = 54/613 (8%)
Query: 40 LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIH--FASFADLDYAFRVFYQIENPN 97
+ + +S+ ++ QIHA LR L H + + +H +AS + ++ +F+Q +P+
Sbjct: 36 IDKSQSVDEVLQIHAAILRHNL-LLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94
Query: 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
F + I + + K QA +L+ +++ + P++ TF LK+C+ GK
Sbjct: 95 LFLFTAAINTASIN-GLKDQAFLLYVQLLSS-EINPNEFTFSSLLKSCST----KSGKLI 148
Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-------------- 203
H H+ K GL D Y+ L+ YA G + A KVFD M ERSLVS
Sbjct: 149 HTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNV 208
Query: 204 -----------------WNVMIDAFVQFGEFDSALKLFRRM--QILFEPDGYTFQSITSA 244
WNVMID + Q G + AL LF+++ + +PD T + SA
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSA 268
Query: 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
C+ + L G W H ++ + +V V LIDMY KCGSL+ A VF P++D+
Sbjct: 269 CSQIGALETGRWIHVFVK---SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325
Query: 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364
+WN++I G+A+HG ++ AL+ F+ + P ITF+G L AC H G+V+EG F+
Sbjct: 326 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 385
Query: 365 VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
M EY I P +EHYGCLV LL RAG + A + NM M D+V+W S+L + CK H
Sbjct: 386 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGS-CKLHGD 444
Query: 425 VVLSEEVAKQVIESEGGI---CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
VL +E+A+ +I G+ SG+YVLLS +YAS + V VR LM +KG+ KEPG
Sbjct: 445 FVLGKEIAEYLI----GLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500
Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
S+IEI+ HEF AGD H ++K+IY L I E++KS GY P+ + + D + K+
Sbjct: 501 STIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPN-TNTVLQDLEETEKEQ 559
Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
SL++HSERLAIA G+++ KPG P+++FKNLRVC DCH VTKLIS+I +I++RDR RFH
Sbjct: 560 SLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFH 619
Query: 602 HFKDGSCSCMDYW 614
HF DGSCSC D+W
Sbjct: 620 HFTDGSCSCGDFW 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/558 (39%), Positives = 335/558 (60%), Gaps = 49/558 (8%)
Query: 98 SFTWNTLIRACARSVDAKPQ---AIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQG 154
SF WN +IRA +V + PQ I ++ RM V PD HTFPF L + G
Sbjct: 24 SFLWNIIIRAIVHNVSS-PQRHSPISVYLRM-RNHRVSPDFHTFPFLLPSFHNPLHLPLG 81
Query: 155 KQAHAHIFKRGLVSDVYINNSLIHFYASCGHL---------------------------- 186
++ HA I GL D ++ SL++ Y+SCG L
Sbjct: 82 QRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKA 141
Query: 187 ---DLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI------LFEPDGYT 237
D A K+FD M ER+++SW+ +I+ +V G++ AL LFR MQ+ P+ +T
Sbjct: 142 GLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFT 201
Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFE 297
++ SAC L L G W HAYI ++ + D+++ +LIDMY KCGSL+ A++VF
Sbjct: 202 MSTVLSACGRLGALEQGKWVHAYIDKY---HVEIDIVLGTALIDMYAKCGSLERAKRVFN 258
Query: 298 SM-PKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
++ K+D+ +++++I A++G + + F + ++ +PNS+TFVG+L AC HRG++
Sbjct: 259 ALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLI 318
Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
+EG+ YF +MI E+ ITP ++HYGC+VDL R+G I EA +++MPM+PD +IW SLL
Sbjct: 319 NEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378
Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
+ + E K++IE + + SG YVLLS VYA RW +V +R M KG+
Sbjct: 379 G-SRMLGDIKTCEGALKRLIELD-PMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGIN 436
Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
K PGCS +E++G+ HEF GD S ++++IY LD I ++L+ GY D ++ ++D +
Sbjct: 437 KVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTD-TKEVLLDLNE 495
Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
K+ +L HSE+LAIA ++ +PG P+R+ KNLR+C DCH V K+IS++F+ EI+VRD
Sbjct: 496 KDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRD 555
Query: 597 RARFHHFKDGSCSCMDYW 614
RFHHF+DGSCSC D+W
Sbjct: 556 CNRFHHFRDGSCSCRDFW 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/580 (37%), Positives = 350/580 (60%), Gaps = 15/580 (2%)
Query: 40 LTECKSMSQLKQIHAQALRTALPQQHKTLL--IYSRIIHFASFADLDYAFRVFYQIENPN 97
L C ++ + KQ+HA+ ++ +L + ++ H ++YA +F I++P
Sbjct: 37 LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96
Query: 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
+F +NT+IR +V + +A+ + M+++GN PD T+P LKAC L + +GKQ
Sbjct: 97 TFDFNTMIRGYV-NVMSFEEALCFYNEMMQRGNE-PDNFTYPCLLKACTRLKSIREGKQI 154
Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
H +FK GL +DV++ NSLI+ Y CG ++L++ VF+ + ++ SW+ M+ A G +
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214
Query: 218 DSALKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV 275
L LFR M + + + S ACA L+LGM H ++LR+ +++V
Sbjct: 215 SECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISE---LNIIV 271
Query: 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
SL+DMY KCG LD A +F+ M KR+ +++++I G ALHG E+AL+ F +++ +E
Sbjct: 272 QTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI-KEG 330
Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
P+ + +V VL+AC+H G+V EGR F M+ E + P EHYGCLVDLL RAG ++EA
Sbjct: 331 LEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEA 390
Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455
L + ++P++ + VIWR+ L C + ++ L + A+++++ G Y+L+S +Y+
Sbjct: 391 LETIQSIPIEKNDVIWRTFLSQC-RVRQNIELGQIAAQELLKLSSHN-PGDYLLISNLYS 448
Query: 456 SARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515
+ W+DV R + KG+ + PG S +E+ G H F + D SHP+ K+IY L ++
Sbjct: 449 QGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEW 508
Query: 516 KLKSRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVC 574
+LK GY+PD +Q + VDE + K+ L+ HS+++AIA G+L PG I++ +NLR+C
Sbjct: 509 QLKFEGYSPDLTQILLNVDE--EEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMC 566
Query: 575 KDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
DCH TK IS I+ EI+VRDR RFH FK G+CSC DYW
Sbjct: 567 SDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/603 (38%), Positives = 344/603 (57%), Gaps = 41/603 (6%)
Query: 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTL 104
+ +++QIHA+ + + + + + + LDYA ++ + E P F N++
Sbjct: 18 TFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSM 77
Query: 105 IRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFK 163
IRA +S ++ ++R++ GN L PD +T F ++AC L G Q H +
Sbjct: 78 IRAHCKS-PVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIR 136
Query: 164 RGLVSDVYINNSLIHFYASCGHLD-------------------------------LANKV 192
RG +D ++ LI YA G LD A K+
Sbjct: 137 RGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKL 196
Query: 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251
F+ M ER ++WN MI + Q GE AL +F MQ+ + +G S+ SAC L L
Sbjct: 197 FEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGAL 256
Query: 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSII 311
G WAH+YI R+ + V + +L+D+Y KCG ++ A +VF M ++++ +W+S +
Sbjct: 257 DQGRWAHSYIERN---KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSAL 313
Query: 312 LGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371
G A++G E L+ F L+ ++ +PN++TFV VL C+ G V EG+ +FD M NE+
Sbjct: 314 NGLAMNGFGEKCLELFS-LMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFG 372
Query: 372 ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEV 431
I P LEHYGCLVDL ARAG +++A+ ++ MPMKP A +W SLL A + + ++ L
Sbjct: 373 IEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHAS-RMYKNLELGVLA 431
Query: 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
+K+++E E G YVLLS +YA + W++V VR+ M KGV K+PGCS +E++G H
Sbjct: 432 SKKMLELETA-NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVH 490
Query: 492 EFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA 551
EFF GD SHP+ QI I +L+ GY D + M D ++ K+ +L LHSE+ A
Sbjct: 491 EFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKAD-TTPVMFDIDEEEKEDALCLHSEKAA 549
Query: 552 IALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCM 611
IA GI++LK +PIR+ KNLRVC DCH+V+ +IS+IFN EIIVRDR RFHHFKDG CSC
Sbjct: 550 IAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCN 609
Query: 612 DYW 614
+W
Sbjct: 610 GFW 612
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| 225424875 | 607 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.988 | 0.698 | 0.0 | |
| 296086445 | 593 | unnamed protein product [Vitis vinifera] | 0.954 | 0.988 | 0.688 | 0.0 | |
| 224143723 | 607 | predicted protein [Populus trichocarpa] | 0.982 | 0.993 | 0.679 | 0.0 | |
| 449435366 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.990 | 0.685 | 0.0 | |
| 8778758 | 695 | T30E16.32 [Arabidopsis thaliana] | 0.951 | 0.840 | 0.667 | 0.0 | |
| 15218900 | 638 | pentatricopeptide repeat-containing prot | 0.951 | 0.915 | 0.667 | 0.0 | |
| 110737061 | 629 | hypothetical protein [Arabidopsis thalia | 0.951 | 0.928 | 0.667 | 0.0 | |
| 5080805 | 615 | Hypothetical protein [Arabidopsis thalia | 0.936 | 0.934 | 0.674 | 0.0 | |
| 356524110 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.932 | 0.660 | 0.0 | |
| 297837569 | 608 | hypothetical protein ARALYDRAFT_475343 [ | 0.933 | 0.942 | 0.640 | 0.0 |
| >gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/606 (69%), Positives = 489/606 (80%), Gaps = 6/606 (0%)
Query: 9 GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
PP+ H+ S N SF +H LL L C +SQLKQ+HAQ +RT T
Sbjct: 8 APPSHLPHAIS------NSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTF 61
Query: 69 LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
+YSRI+HF+S DL YAFRVF+QIENPNSF WN LIRACARS D K AI L+ RM+EQ
Sbjct: 62 FLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQ 121
Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
G+V+ DKHTFPF LKACAYLFA S+G+Q HA I K G SDVYINNSL+HFYA+C LD
Sbjct: 122 GSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDF 181
Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
A VFD M ERSLVSWNV+IDAFV+FGEFD+AL LF MQ FEPDGYT QSI +ACAG+
Sbjct: 182 AKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGM 241
Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
+LSLGMWAH ++L+ D V DVL+N SL+DMYCKCGSL++A Q+F MPKRD+TSWN
Sbjct: 242 GSLSLGMWAHVFLLKKFDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWN 301
Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
S+ILGF+ HG AAL+YF +V E PN+ITFVGVLSACNH G+VSEGR YFDVM+
Sbjct: 302 SMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVT 361
Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
EY I P LEHYGCLVDLLARAG IDEAL +VSNMPM+PD VIWRSLLDACCK++A V LS
Sbjct: 362 EYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELS 421
Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
EE+A++V+E+EGG+CSGVYVLLSRVYASA RWNDVG+VRKLMTDKGV KEPGCSSIEIDG
Sbjct: 422 EEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDG 481
Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
+AHEFFAGDTSHPQT++IY LD+I+E+++ GY+PD SQA MVDE DGKQ SLRLHSE
Sbjct: 482 VAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSE 541
Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
RLAIA G+L KPGMPIR+FKNLRVC +CH+VTKLISR+FN EIIVRDR RFHHFKDG+C
Sbjct: 542 RLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGAC 601
Query: 609 SCMDYW 614
SCMDYW
Sbjct: 602 SCMDYW 607
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/606 (68%), Positives = 481/606 (79%), Gaps = 20/606 (3%)
Query: 9 GPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTL 68
PP+ H+ S N SF +H LL L C +SQLKQ+HAQ +RT T
Sbjct: 8 APPSHLPHAIS------NSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTF 61
Query: 69 LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128
+YSRI+HF+S DL YAFRVF+QIENPNSF WN LIRACARS D K AI L+ RM+EQ
Sbjct: 62 FLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQ 121
Query: 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188
G+V+ DKHTFPF LKACAYLFA S+G+Q HA I K G SDVYINNSL+HFYA+C LD
Sbjct: 122 GSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDF 181
Query: 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248
A VFD M ERSLVSWNV+IDAFV+FGEFD+AL LF MQ FEPDGYT QSI +ACAG+
Sbjct: 182 AKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGM 241
Query: 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWN 308
+LSLG +V DVL+N SL+DMYCKCGSL++A Q+F MPKRD+TSWN
Sbjct: 242 GSLSLG--------------IVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWN 287
Query: 309 SIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368
S+ILGF+ HG AAL+YF +V E PN+ITFVGVLSACNH G+VSEGR YFDVM+
Sbjct: 288 SMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVT 347
Query: 369 EYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLS 428
EY I P LEHYGCLVDLLARAG IDEAL +VSNMPM+PD VIWRSLLDACCK++A V LS
Sbjct: 348 EYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELS 407
Query: 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDG 488
EE+A++V+E+EGG+CSGVYVLLSRVYASA RWNDVG+VRKLMTDKGV KEPGCSSIEIDG
Sbjct: 408 EEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDG 467
Query: 489 IAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSE 548
+AHEFFAGDTSHPQT++IY LD+I+E+++ GY+PD SQA MVDE DGKQ SLRLHSE
Sbjct: 468 VAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSE 527
Query: 549 RLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSC 608
RLAIA G+L KPGMPIR+FKNLRVC +CH+VTKLISR+FN EIIVRDR RFHHFKDG+C
Sbjct: 528 RLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGAC 587
Query: 609 SCMDYW 614
SCMDYW
Sbjct: 588 SCMDYW 593
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/618 (67%), Positives = 496/618 (80%), Gaps = 15/618 (2%)
Query: 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTA 60
M + ++Q PP T + N+++ LL L ECK MSQLKQIHA +LR+
Sbjct: 1 MVLGVIQSPPPQIVTSKPT-----------NHYNLLLQHLNECKDMSQLKQIHALSLRST 49
Query: 61 LPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARS--VDAKPQA 118
LP TL +YSRI+HF+S DL+YA+RVF Q++NPNSF WN LIRACA+S V K +A
Sbjct: 50 LPNHSTTLFLYSRILHFSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREA 109
Query: 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178
I+L+ M+++ + PD HTFPF LKACAYLFA +GKQAHAH+ K G SDVYINNSLIH
Sbjct: 110 ILLYNTMLQRSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIH 169
Query: 179 FYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYT 237
FYASCG L+ A VFD M +RSLVSWN MIDAFV FGEF++AL+LF + Q F EPDGYT
Sbjct: 170 FYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYT 229
Query: 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVF 296
QS+ +ACAGL LSLGMWAHA++LR+C S+ D VLVNNSL+DMYCKCGSLDIA Q+F
Sbjct: 230 IQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIF 289
Query: 297 ESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356
E M K D+TSWNS+ILGFA+HG+ E AL+ F+R++ F PNSITFVGVLSACNHR MV
Sbjct: 290 EGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMV 349
Query: 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416
+EGR YFD+M+NEY I P LEHYGCLVD+LARAG IDEAL LV++MPMKPD VIWRSLLD
Sbjct: 350 NEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLD 409
Query: 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476
+CCKK+ASV LSE +A+Q++ESE SGVYVLLSRVYASA RWNDVGLVRKLMT+ G+
Sbjct: 410 SCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGIL 469
Query: 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELD 536
KEPGCS IE+DG+ HEFFAGDTSHPQTK+IY L++++E++ S GY PDYSQA MVDEL+
Sbjct: 470 KEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELN 529
Query: 537 DGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRD 596
K+ SLRLHSERLAIALG+LNLKPGMPIR+FKNLRVC DCH+VT LIS IFNVEIIVRD
Sbjct: 530 TSKRDSLRLHSERLAIALGLLNLKPGMPIRIFKNLRVCDDCHKVTGLISEIFNVEIIVRD 589
Query: 597 RARFHHFKDGSCSCMDYW 614
R RFHHFKDGSCSCMDYW
Sbjct: 590 RVRFHHFKDGSCSCMDYW 607
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/600 (68%), Positives = 489/600 (81%), Gaps = 1/600 (0%)
Query: 15 THSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI 74
T+S S+ + E S + S L LT+C +S+LKQIHAQA+R + +L +YSRI
Sbjct: 7 TNSQSLPIEIKGENSKTHQSRFLHLLTDCTDLSKLKQIHAQAIRN-FSTHNSSLFLYSRI 65
Query: 75 IHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134
+H +S D DYA RVF QI+NPNSF WNTLI ACARS+D K QAI +F RM+E+G+V PD
Sbjct: 66 LHVSSLIDFDYACRVFNQIDNPNSFMWNTLIGACARSLDRKEQAIEIFYRMLEEGSVEPD 125
Query: 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD 194
KHTFPF LKACAY+FA S+G+QAHA IFK GL DVY+ NSLIH YASCG L +A KVF+
Sbjct: 126 KHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVFE 185
Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254
M RSLVSWNVMIDA+VQ G F++ALKLF MQ FEPDGYT QSI SACAG+ LSLG
Sbjct: 186 KMPLRSLVSWNVMIDAYVQSGLFENALKLFVEMQNSFEPDGYTMQSIVSACAGIGALSLG 245
Query: 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314
MWAHAY+LR ++ DVL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL
Sbjct: 246 MWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILAL 305
Query: 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374
A+HGR +AAL+ F RLV E F PNS+TFVGVLSACNH GMV++GR YFD+M+N+Y I P
Sbjct: 306 AMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEP 365
Query: 375 VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434
LEHYGCLVDLL+R+G IDEAL LV+NM +KPDAVIWRSLLDAC K++A V LSEEVA +
Sbjct: 366 RLEHYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFK 425
Query: 435 VIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFF 494
+++SE I SGVYV+LSRVYASAR+WNDVG++RK+MTD GVTKEPGCSSIEIDGI+HEFF
Sbjct: 426 ILQSEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFF 485
Query: 495 AGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554
AGDTSHP+ K+IYG +DLI+EKL+ RGY+PD SQA MVDE D+ KQ SL+LHSERLAIA
Sbjct: 486 AGDTSHPRIKEIYGVIDLIEEKLERRGYSPDCSQATMVDEPDNIKQQSLKLHSERLAIAF 545
Query: 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
G+LNLKPG P+R+FKNLRVC DCH+VTKLIS IFNVEII+RDR RFHHFK G CSCMD+W
Sbjct: 546 GLLNLKPGTPVRIFKNLRVCNDCHQVTKLISEIFNVEIIMRDRNRFHHFKHGMCSCMDFW 605
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
N+H + S C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRV
Sbjct: 103 NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 162
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F
Sbjct: 163 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 222
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
FS+GKQ H I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 223 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 282
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
A V+FGE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD +
Sbjct: 283 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 342
Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 343 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 402
Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
+V E+ PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 403 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 462
Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G
Sbjct: 463 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 522
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 523 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 582
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
TKQIY L +ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 583 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 642
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 643 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 695
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g59720, mitochondrial; Flags: Precursor gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
N+H + S C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRV
Sbjct: 46 NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 105
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F
Sbjct: 106 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
FS+GKQ H I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
A V+FGE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD +
Sbjct: 226 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 285
Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 286 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 345
Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
+V E+ PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 346 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 405
Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G
Sbjct: 406 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 465
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 466 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 525
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
TKQIY L +ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 526 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 585
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 586 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/593 (66%), Positives = 470/593 (79%), Gaps = 9/593 (1%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
N+H + S C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRV
Sbjct: 37 NHHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRV 96
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F
Sbjct: 97 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 156
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
FS+GKQ H I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 157 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 216
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
A V+FGE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD +
Sbjct: 217 ALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDV 276
Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR
Sbjct: 277 AMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDR 336
Query: 330 LV-VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
+V E+ PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+AR
Sbjct: 337 MVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIAR 396
Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G
Sbjct: 397 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGN 456
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
CSG YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQ
Sbjct: 457 CSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQ 516
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKP 561
TKQIY L +ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 517 TKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPP 576
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 577 QTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 629
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/584 (67%), Positives = 466/584 (79%), Gaps = 9/584 (1%)
Query: 40 LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRVFYQIENPNS 98
L C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRVF IEN +S
Sbjct: 32 LQTCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSS 91
Query: 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
F WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F FS+GKQ H
Sbjct: 92 FMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVH 151
Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFD 218
I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MIDA V+FGE+D
Sbjct: 152 CQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYD 211
Query: 219 SALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
SAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD + DVLV NS
Sbjct: 212 SALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNS 271
Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV-VEESFS 337
LI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR+V E+
Sbjct: 272 LIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVR 331
Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+ARAG I EA+
Sbjct: 332 PNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAID 391
Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGICSGVYVLLS 451
+V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G CSG YVLLS
Sbjct: 392 MVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLS 451
Query: 452 RVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLD 511
RVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQTKQIY L
Sbjct: 452 RVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLK 511
Query: 512 LIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGMPIRVFKN 570
+ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P PIR+FKN
Sbjct: 512 VIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKN 571
Query: 571 LRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
LRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 572 LRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 615
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/578 (66%), Positives = 458/578 (79%), Gaps = 8/578 (1%)
Query: 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRII-HFASFA--DLDYAFRVFYQIENPNSFTW 101
+M QLKQIHAQ LRT + +Y+ I+ H++S +L YA RVF+ NPNSF W
Sbjct: 34 TMPQLKQIHAQTLRTVNSNHPNAIFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMW 93
Query: 102 NTLIRACARSVDA--KPQAIVLFQRMI--EQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
NTLIR ARS + K +A+ L++ M+ E+ +PD HTFP LKACAY F+ +GKQ
Sbjct: 94 NTLIRVYARSTNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQV 153
Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
HAH+ K G SD YI NSL+HFYA+CG LDLA K+F M ER+ VSWN+MID++ + G F
Sbjct: 154 HAHVLKHGFESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIF 213
Query: 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277
D+AL++F MQ + +PDGYT QS+ SACAGL LSLG+W HAYIL+ CD ++V DVLVN
Sbjct: 214 DTALRMFGEMQRVHDPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNT 273
Query: 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337
L+DMYCK G L+IA+QVFESM RDL +WNS+ILG A+HG A+AAL Y+ R+V E
Sbjct: 274 CLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIV 333
Query: 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397
PNSITFVGVLSACNHRGMV EG +FD+M EYN+ P LEHYGCLVDL ARAG I+EAL+
Sbjct: 334 PNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALN 393
Query: 398 LVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-SGVYVLLSRVYAS 456
LVS M +KPDAVIWRSLLDACCK++ASV LSEE+AKQV ESEG +C SGVYVLLS+VYAS
Sbjct: 394 LVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYAS 453
Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
A RWNDVGL+RKLM++KGVTKEPGCS IEIDG+ HEFFAGDT+HP+++ IY + I+EK
Sbjct: 454 ACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVVTEIEEK 513
Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
L+S GY PDYS A MVDE++DGK ++LRLHSERLAIA GILN KP +PIRVFKNLRVC D
Sbjct: 514 LESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILNSKPDVPIRVFKNLRVCND 573
Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
CH VTKLISRI+NVEIIVRDRARFHHFKDG+CSCMDYW
Sbjct: 574 CHRVTKLISRIYNVEIIVRDRARFHHFKDGTCSCMDYW 611
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp. lyrata] gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/593 (64%), Positives = 458/593 (77%), Gaps = 20/593 (3%)
Query: 31 NNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRV 89
N+H +LS C MSQLKQ+HA LRT P + TL +Y +I+ +S F+D++YAFRV
Sbjct: 27 NHHRRILSLAETCSDMSQLKQLHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRV 86
Query: 90 FYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149
F IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F
Sbjct: 87 FDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIF 146
Query: 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 209
S+GKQ H I K G DVY+NN LIHFY SCG LDLA KVFD M ERSLVSWN MID
Sbjct: 147 GLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMID 206
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269
A V+ GE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG W+H ++LR+CD +
Sbjct: 207 ALVRVGEYDSALQLFRDMQKSFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVDV 266
Query: 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329
DVL+ NSLI+MYCKCGSL +A QVF+ M K DL SWN++ILGFA HG+AE A+ FD
Sbjct: 267 AMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFDC 326
Query: 330 LVVE-ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388
+V E ++ PNS+TFV +L ACNHRGMV++GR YFD+M+ EY I P LEHYGC++DLLAR
Sbjct: 327 MVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLAR 386
Query: 389 AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGI 442
AG I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I +S
Sbjct: 387 AGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQSSNSN 446
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
CSG YVLLSRVYASA RWNDVG+VRKLM+D G+ KEPGCSSIEI+GI++EFFAGDTSHPQ
Sbjct: 447 CSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDTSHPQ 506
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDD-GKQSSLRLHSERLAIALGILNLKP 561
TKQIY L +ID++L+S +VD +D K+ SLRLHSERLAIA G+++L P
Sbjct: 507 TKQIYQQLKVIDDRLRS-----------IVDATNDSSKEYSLRLHSERLAIAFGLISLPP 555
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 556 QTPIRIFKNLRVCSDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 608
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 614 | ||||||
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.947 | 0.912 | 0.666 | 1.9e-218 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.882 | 0.731 | 0.435 | 7.4e-121 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.913 | 0.942 | 0.423 | 1.2e-120 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.921 | 0.938 | 0.4 | 2e-118 | |
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.915 | 0.927 | 0.377 | 2.6e-111 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.850 | 0.702 | 0.392 | 1.5e-108 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.882 | 0.857 | 0.404 | 2.4e-108 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.905 | 0.952 | 0.394 | 1e-107 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.872 | 0.850 | 0.397 | 6.5e-106 | |
| TAIR|locus:2102514 | 581 | AT3G56550 [Arabidopsis thalian | 0.913 | 0.965 | 0.377 | 3.6e-105 |
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2110 (747.8 bits), Expect = 1.9e-218, P = 1.9e-218
Identities = 394/591 (66%), Positives = 467/591 (79%)
Query: 33 HXXXXXXXTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS-FADLDYAFRVFY 91
H C MSQLKQ+HA LRT P++ TL +Y +I+ +S F+D++YAFRVF
Sbjct: 48 HQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107
Query: 92 QIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF 151
IEN +SF WNTLIRACA V K +A +L+++M+E+G PDKHTFPF LKACAY+F F
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167
Query: 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAF 211
S+GKQ H I K G DVY+NN LIH Y SCG LDLA KVFD M ERSLVSWN MIDA
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 227
Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
V+FGE+DSAL+LFR MQ FEPDGYT QS+ SACAGL +LSLG WAHA++LR CD +
Sbjct: 228 VRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAM 287
Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331
DVLV NSLI+MYCKCGSL +A QVF+ M KRDL SWN++ILGFA HGRAE A+ +FDR+V
Sbjct: 288 DVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMV 347
Query: 332 VE-ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390
+ E+ PNS+TFVG+L ACNHRG V++GR YFD+M+ +Y I P LEHYGC+VDL+ARAG
Sbjct: 348 DKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAG 407
Query: 391 NIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI------ESEGGICS 444
I EA+ +V +MPMKPDAVIWRSLLDACCKK ASV LSEE+A+ +I ES G CS
Sbjct: 408 YITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCS 467
Query: 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTK 504
G YVLLSRVYASA RWNDVG+VRKLM++ G+ KEPGCSSIEI+GI+HEFFAGDTSHPQTK
Sbjct: 468 GAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTK 527
Query: 505 QIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDG-KQSSLRLHSERLAIALGILNLKPGM 563
QIY L +ID++L+S GY PD SQA +VD +DG K+ SLRLHSERLAIA G++NL P
Sbjct: 528 QIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQT 587
Query: 564 PIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
PIR+FKNLRVC DCHEVTKLIS++FN EIIVRDR RFHHFKDGSCSC+DYW
Sbjct: 588 PIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 241/553 (43%), Positives = 345/553 (62%)
Query: 65 HKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQ 123
H+ ++ Y+ +I +AS ++ A ++F +I + +WN +I A + + K +A+ LF+
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK-EALELFK 255
Query: 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183
M++ NV PD+ T + ACA + G+Q H I G S++ I N+LI Y+ C
Sbjct: 256 DMMKT-NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 314
Query: 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE-PDGYTFQSIT 242
G L+ A +F+ + + ++SWN +I + + AL LF+ M E P+ T SI
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374
Query: 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVL-VNNSLIDMYCKCGSLDIARQVFESMPK 301
ACA L + +G W H YI + VT+ + SLIDMY KCG ++ A QVF S+
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKG--VTNASSLRTSLIDMYAKCGDIEAAHQVFNSILH 432
Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
+ L+SWN++I GFA+HGRA+A+ F R+ + P+ ITFVG+LSAC+H GM+ GR
Sbjct: 433 KSLSSWNAMIFGFAMHGRADASFDLFSRMR-KIGIQPDDITFVGLLSACSHSGMLDLGRH 491
Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
F M +Y +TP LEHYGC++DLL +G EA +++ M M+PD VIW SLL AC K
Sbjct: 492 IFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC-KM 550
Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
H +V L E A+ +I+ E G YVLLS +YASA RWN+V R L+ DKG+ K PGC
Sbjct: 551 HGNVELGESFAENLIKIEPEN-PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609
Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
SSIEID + HEF GD HP+ ++IYG L+ ++ L+ G+ PD S+ E ++ K+
Sbjct: 610 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEME-EEWKEG 668
Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
+LR HSE+LAIA G+++ KPG + + KNLRVC++CHE TKLIS+I+ EII RDR RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728
Query: 602 HFKDGSCSCMDYW 614
HF+DG CSC DYW
Sbjct: 729 HFRDGVCSCNDYW 741
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 244/576 (42%), Positives = 355/576 (61%)
Query: 45 SMSQLKQIHAQALRTALP----QQHKTLLIYSRIIHFASFADLDYAFRVFYQIENP-NSF 99
S+++L+QIHA ++R + + K L+ Y ++ S + YA +VF +IE P N F
Sbjct: 29 SITKLRQIHAFSIRHGVSISDAELGKHLIFY--LVSLPSPPPMSYAHKVFSKIEKPINVF 86
Query: 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159
WNTLIR A + A L++ M G V PD HT+PF +KA + G+ H+
Sbjct: 87 IWNTLIRGYAE-IGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHS 145
Query: 160 HIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219
+ + G S +Y+ NSL+H YA+CG + A KVFD M E+ LV+WN +I+ F + G+ +
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 220 ALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
AL L+ M +PDG+T S+ SACA + L+LG H Y+++ L ++ +N
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV---GLTRNLHSSNV 262
Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
L+D+Y +CG ++ A+ +F+ M ++ SW S+I+G A++G + A++ F + E P
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322
Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
ITFVG+L AC+H GMV EG +YF M EY I P +EH+GC+VDLLARAG + +A
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEY 382
Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
+ +MPM+P+ VIWR+LL AC H L+E Q+++ E SG YVLLS +YAS +
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTV-HGDSDLAEFARIQILQLEPNH-SGDYVLLSNMYASEQ 440
Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
RW+DV +RK M GV K PG S +E+ HEF GD SHPQ+ IY L + +L+
Sbjct: 441 RWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLR 500
Query: 519 SRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCH 578
S GY P S VD ++ K++++ HSE++AIA +++ PI V KNLRVC DCH
Sbjct: 501 SEGYVPQISNV-YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCH 559
Query: 579 EVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
KL+S+++N EI+VRDR+RFHHFK+GSCSC DYW
Sbjct: 560 LAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
Identities = 230/575 (40%), Positives = 352/575 (61%)
Query: 41 TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
++C S+ +L QI A A+++ + + + + + + YA +F + P+
Sbjct: 37 SKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMSEPDIVI 96
Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
+N++ R +R + + LF ++E G +LPD +TFP LKACA A +G+Q H
Sbjct: 97 FNSMARGYSRFTNPL-EVFSLFVEILEDG-ILPDNYTFPSLLKACAVAKALEEGRQLHCL 154
Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
K GL +VY+ +LI+ Y C +D A VFD ++E +V +N MI + + + A
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214
Query: 221 LKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279
L LFR MQ + +P+ T S+ S+CA L +L LG W H Y +H S V VN +L
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKH---SFCKYVKVNTAL 271
Query: 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339
IDM+ KCGSLD A +FE M +D +W+++I+ +A HG+AE ++ F+R+ E+ P+
Sbjct: 272 IDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR-SENVQPD 330
Query: 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399
ITF+G+L+AC+H G V EGR YF M++++ I P ++HYG +VDLL+RAGN+++A +
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI 390
Query: 400 SNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459
+P+ P ++WR LL A C H ++ L+E+V++++ E + G YV+LS +YA ++
Sbjct: 391 DKLPISPTPMLWRILL-AACSSHNNLDLAEKVSERIFELDDSH-GGDYVILSNLYARNKK 448
Query: 460 WNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519
W V +RK+M D+ K PGCSSIE++ + HEFF+GD T +++ LD + ++LK
Sbjct: 449 WEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKL 508
Query: 520 RGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHE 579
GY PD S + D K+ +LR HSE+LAI G+LN PG IRV KNLRVC+DCH
Sbjct: 509 SGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHN 568
Query: 580 VTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
KLIS IF ++++RD RFHHF+DG CSC D+W
Sbjct: 569 AAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
|
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 218/577 (37%), Positives = 349/577 (60%)
Query: 43 CKSMSQLKQIHAQALRTAL--PQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFT 100
C ++ + KQ+HA+ ++ +L + ++ H ++YA +F I++P +F
Sbjct: 40 CHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTFD 99
Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
+NT+IR +V + +A+ + M+++GN PD T+P LKAC L + +GKQ H
Sbjct: 100 FNTMIRGYV-NVMSFEEALCFYNEMMQRGNE-PDNFTYPCLLKACTRLKSIREGKQIHGQ 157
Query: 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSA 220
+FK GL +DV++ NSLI+ Y CG ++L++ VF+ + ++ SW+ M+ A G +
Sbjct: 158 VFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSEC 217
Query: 221 LKLFRRM--QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278
L LFR M + + + S ACA L+LGM H ++LR+ +++V S
Sbjct: 218 LLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISE---LNIIVQTS 274
Query: 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338
L+DMY KCG LD A +F+ M KR+ +++++I G ALHG E+AL+ F +++ +E P
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMI-KEGLEP 333
Query: 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398
+ + +V VL+AC+H G+V EGR F M+ E + P EHYGCLVDLL RAG ++EAL
Sbjct: 334 DHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALET 393
Query: 399 VSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458
+ ++P++ + VIWR+ L C + ++ L + A+++++ G Y+L+S +Y+ +
Sbjct: 394 IQSIPIEKNDVIWRTFLSQC-RVRQNIELGQIAAQELLKLSSHN-PGDYLLISNLYSQGQ 451
Query: 459 RWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518
W+DV R + KG+ + PG S +E+ G H F + D SHP+ K+IY L ++ +LK
Sbjct: 452 MWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLK 511
Query: 519 SRGYTPDYSQAAM-VDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDC 577
GY+PD +Q + VDE + K+ L+ HS+++AIA G+L PG I++ +NLR+C DC
Sbjct: 512 FEGYSPDLTQILLNVDE--EEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDC 569
Query: 578 HEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
H TK IS I+ EI+VRDR RFH FK G+CSC DYW
Sbjct: 570 HTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
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| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 209/533 (39%), Positives = 311/533 (58%)
Query: 83 LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
++ A ++F +E +S +W +I+ A++ AK +AI F+ M QG + D++ F L
Sbjct: 221 IEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAK-EAIECFREMKVQGLKM-DQYPFGSVL 277
Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
AC L A ++GKQ HA I + +Y+ ++LI Y C L A VFD M ++++V
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261
SW M+ + Q G + A+K+F MQ +PD YT SACA +++L G H
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397
Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAE 321
+ L+ V V+NSL+ +Y KCG +D + ++F M RD SW +++ +A GRA
Sbjct: 398 ITS---GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAV 454
Query: 322 AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381
++ FD++V + P+ +T GV+SAC+ G+V +G+ YF +M +EY I P + HY C
Sbjct: 455 ETIQLFDKMV-QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSC 513
Query: 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441
++DL +R+G ++EA+ ++ MP PDA+ W +LL AC K ++ + + A+ +IE +
Sbjct: 514 MIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNK-GNLEIGKWAAESLIELDPH 572
Query: 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHP 501
+G Y LLS +YAS +W+ V +R+ M +K V KEPG S I+ G H F A D S P
Sbjct: 573 HPAG-YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSP 631
Query: 502 QTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKP 561
QIY L+ ++ K+ GY PD S D + K L HSERLAIA G++ +
Sbjct: 632 YLDQIYAKLEELNNKIIDNGYKPDTSFVHH-DVEEAVKVKMLNYHSERLAIAFGLIFVPS 690
Query: 562 GMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
G PIRV KNLRVC DCH TK IS + EI+VRD RFH FKDG+CSC D+W
Sbjct: 691 GQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
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| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
Identities = 230/569 (40%), Positives = 341/569 (59%)
Query: 57 LRTALPQQHKT----LLIYSRIIHFASFADL-DYAFRVFYQI---E-NPNSFTWNTLIRA 107
+R +L H+T L +++ I+ AS L D AF ++ Q+ E NPN FT+++L+++
Sbjct: 80 IRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKS 139
Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
C+ K ++ +++ G + P+ ++A + +F R
Sbjct: 140 CSTK-SGK----LIHTHVLKFGLGID-----PYVATGLVDVYAKGGDVVSAQKVFDRMPE 189
Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
+ + ++I YA G+++ A +FD+M ER +VSWNVMID + Q G + AL LF+++
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKL 249
Query: 228 --QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285
+ +PD T + SAC+ + L G W H ++ + +V V LIDMY K
Sbjct: 250 LAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK---SSRIRLNVKVCTGLIDMYSK 306
Query: 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345
CGSL+ A VF P++D+ +WN++I G+A+HG ++ AL+ F+ + P ITF+G
Sbjct: 307 CGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366
Query: 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK 405
L AC H G+V+EG F+ M EY I P +EHYGCLV LL RAG + A + NM M
Sbjct: 367 TLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD 426
Query: 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465
D+V+W S+L +C K H VL +E+A+ +I SG+YVLLS +YAS + V
Sbjct: 427 ADSVLWSSVLGSC-KLHGDFVLGKEIAEYLIGLNIKN-SGIYVLLSNIYASVGDYEGVAK 484
Query: 466 VRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPD 525
VR LM +KG+ KEPG S+IEI+ HEF AGD H ++K+IY L I E++KS GY P+
Sbjct: 485 VRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPN 544
Query: 526 YSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLIS 585
+ + D + K+ SL++HSERLAIA G+++ KPG P+++FKNLRVC DCH VTKLIS
Sbjct: 545 -TNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLIS 603
Query: 586 RIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
+I +I++RDR RFHHF DGSCSC D+W
Sbjct: 604 KITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
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| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 225/570 (39%), Positives = 340/570 (59%)
Query: 48 QLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRA 107
QLK+IHA LRT + K L+ + + D+ YA +VF ++ P F WNTL +
Sbjct: 26 QLKKIHAIVLRTGFSE--KNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKG 83
Query: 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167
R+ ++++L+++M + G V PD+ T+PF +KA + L FS G HAH+ K G
Sbjct: 84 YVRN-QLPFESLLLYKKMRDLG-VRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141
Query: 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227
+ L+ Y G L A +F++M + LV+WN + VQ G AL+ F +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201
Query: 228 QI-LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286
+ D +T S+ SAC L +L +G Y R + +++V N+ +DM+ KC
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIG--EEIYD-RARKEEIDCNIIVENARLDMHLKC 258
Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
G+ + AR +FE M +R++ SW+++I+G+A++G + AL F + E PN +TF+GV
Sbjct: 259 GNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQ-NEGLRPNYVTFLGV 317
Query: 347 LSACNHRGMVSEGRDYFDVMI--NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404
LSAC+H G+V+EG+ YF +M+ N+ N+ P EHY C+VDLL R+G ++EA + MP+
Sbjct: 318 LSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPV 377
Query: 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464
+PD IW +LL AC H ++L ++VA ++E+ I S +VLLS +YA+A +W+ V
Sbjct: 378 EPDTGIWGALLGACAV-HRDMILGQKVADVLVETAPDIGS-YHVLLSNIYAAAGKWDCVD 435
Query: 465 LVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTP 524
VR M G K SS+E +G H F GD SHPQ+K IY LD I +K++ GY P
Sbjct: 436 KVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVP 495
Query: 525 DYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLI 584
D E+++ K+ SL HSE+LAIA G++ +PG PIRV KNLR C DCH +K +
Sbjct: 496 DTCSVFHDVEMEE-KECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFV 554
Query: 585 SRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
S + + EII+RD+ RFHHF++G CSC ++W
Sbjct: 555 SSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
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| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
Identities = 220/553 (39%), Positives = 333/553 (60%)
Query: 65 HKTLLIYSRII--HFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLF 122
H+ ++ ++ + F L+ A ++F Q+ N +W T+I A ++ +A+ L
Sbjct: 92 HRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKC-KIHQKALELL 150
Query: 123 QRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS 182
M+ NV P+ +T+ L++C S + H I K GL SDV++ ++LI +A
Sbjct: 151 VLMLRD-NVRPNVYTYSSVLRSCN---GMSDVRMLHCGIIKEGLESDVFVRSALIDVFAK 206
Query: 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSI 241
G + A VFD M+ + WN +I F Q D AL+LF+RM+ F + T S+
Sbjct: 207 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266
Query: 242 TSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301
AC GLA L LGM AH +I+++ D D+++NN+L+DMYCKCGSL+ A +VF M +
Sbjct: 267 LRACTGLALLELGMQAHVHIVKY-DQ----DLILNNALVDMYCKCGSLEDALRVFNQMKE 321
Query: 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361
RD+ +W+++I G A +G ++ ALK F+R+ PN IT VGVL AC+H G++ +G
Sbjct: 322 RDVITWSTMISGLAQNGYSQEALKLFERMK-SSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421
YF M Y I PV EHYGC++DLL +AG +D+A+ L++ M +PDAV WR+LL AC +
Sbjct: 381 YFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC-RV 439
Query: 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGC 481
++VL+E AK+VI + +G Y LLS +YA++++W+ V +R M D+G+ KEPGC
Sbjct: 440 QRNMVLAEYAAKKVIALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGC 498
Query: 482 SSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQS 541
S IE++ H F GD SHPQ ++ L+ + +L GY P+ + + D + +
Sbjct: 499 SWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPE-TNFVLQDLEGEQMED 557
Query: 542 SLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFH 601
SLR HSE+LA+A G++ L IR+ KNLR+C DCH KL S++ I++RD R+H
Sbjct: 558 SLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYH 617
Query: 602 HFKDGSCSCMDYW 614
HF+DG CSC DYW
Sbjct: 618 HFQDGKCSCGDYW 630
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| TAIR|locus:2102514 AT3G56550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 218/578 (37%), Positives = 339/578 (58%)
Query: 43 CKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFA---DLDYAFRVFYQIEN-PNS 98
C SM +L++IH+ + L Q H + I++ ++ F + + L +A +F ++ P++
Sbjct: 15 CNSMKKLRKIHSHVIINGL-QHHPS--IFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPST 71
Query: 99 FTWNTLIRACARSVDAKP-QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
WN LIR + S + P +I+ + RM+ PD TF FALK+C + + + +
Sbjct: 72 SDWNYLIRGFSNS--SSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEI 129
Query: 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEF 217
H + + G + D + SL+ Y++ G +++A+KVFD M R LVSWNVMI F G
Sbjct: 130 HGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLH 189
Query: 218 DSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276
+ AL +++RM D YT ++ S+CA ++ L++G+ H CD + V V+
Sbjct: 190 NQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIA---CDIRCESCVFVS 246
Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESF 336
N+LIDMY KCGSL+ A VF M KRD+ +WNS+I+G+ +HG A+ +F R +V
Sbjct: 247 NALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFF-RKMVASGV 305
Query: 337 SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396
PN+ITF+G+L C+H+G+V EG ++F++M +++++TP ++HYGC+VDL RAG ++ +L
Sbjct: 306 RPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSL 365
Query: 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456
++ D V+WR+LL +C K H ++ L E K++++ E +G YVL++ +Y++
Sbjct: 366 EMIYASSCHEDPVLWRTLLGSC-KIHRNLELGEVAMKKLVQLEA-FNAGDYVLMTSIYSA 423
Query: 457 ARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEK 516
A +RKL+ + PG S IEI H+F D HP++ IY L + +
Sbjct: 424 ANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINR 483
Query: 517 LKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKD 576
GY P+ S D S+ HSE+LAIA G++ G +R+ KNLRVC+D
Sbjct: 484 AILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRD 543
Query: 577 CHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
CH TK +S+ FN EIIVRDR RFHHF DG CSC DYW
Sbjct: 544 CHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WQW5 | PPR85_ARATH | No assigned EC number | 0.6677 | 0.9511 | 0.9153 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00028968001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (609 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 614 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-139 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-126 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-57 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-37 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-20 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 426 bits (1097), Expect = e-139
Identities = 208/564 (36%), Positives = 324/564 (57%), Gaps = 15/564 (2%)
Query: 50 KQIHAQALRTALPQQHKTLLIYSRIIH-FASFADLDYAFRVFYQIENPNSFTWNTLIRAC 108
+++H ++T + + + +I + S A +VF ++E ++ +W +I
Sbjct: 308 REMHGYVVKTGFAVD---VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS 168
+ + P + ++EQ NV PD+ T L ACA L G + H ++GL+S
Sbjct: 365 EK--NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
V + N+LI Y+ C +D A +VF N+ E+ ++SW +I AL FR+M
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288
+ +P+ T + SACA + L G HA++LR + D + N+L+D+Y +CG
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT---GIGFDGFLPNALLDLYVRCGR 539
Query: 289 LDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348
++ A F S ++D+ SWN ++ G+ HG+ A++ F+R+V E +P+ +TF+ +L
Sbjct: 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFISLLC 597
Query: 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDA 408
AC+ GMV++G +YF M +Y+ITP L+HY C+VDLL RAG + EA + ++ MP+ PD
Sbjct: 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
Query: 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468
+W +LL+A C+ H V L E A+ + E + G Y+LL +YA A +W++V VRK
Sbjct: 658 AVWGALLNA-CRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRK 715
Query: 469 LMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQ 528
M + G+T +PGCS +E+ G H F D SHPQ K+I L+ EK+K+ G S+
Sbjct: 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG--SE 773
Query: 529 AAMVDELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIF 588
++ +DE++ K HSERLAIA G++N PGMPI V KNL +C++CH K IS+I
Sbjct: 774 SSSMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833
Query: 589 NVEIIVRDRARFHHFKDGSCSCMD 612
EI VRD +FHHFKDG CSC D
Sbjct: 834 RREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 388 bits (998), Expect = e-126
Identities = 189/532 (35%), Positives = 301/532 (56%), Gaps = 14/532 (2%)
Query: 86 AFRVFYQIENPNSFTWNTLIRACARSVDAKP--QAIVLFQRMIEQGNVLPDKHTFPFALK 143
A R+F ++ N +W T+I VDA +A LF+ M E G+ + TF L+
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGL---VDAGNYREAFALFREMWEDGSD-AEPRTFVVMLR 232
Query: 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS 203
A A L + G+Q H + K G+V D +++ +LI Y+ CG ++ A VFD M E++ V+
Sbjct: 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA 292
Query: 204 WNVMIDAFVQFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
WN M+ + G + AL L+ M D +TF + + LA L AHA ++
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEA 322
R D++ N +L+D+Y K G ++ AR VF+ MP+++L SWN++I G+ HGR
Sbjct: 353 RT---GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 323 ALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382
A++ F+R++ E +PN +TF+ VLSAC + G+ +G + F M + I P HY C+
Sbjct: 410 AVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 383 VDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442
++LL R G +DEA ++ P KP +W +LL AC + H ++ L A+++
Sbjct: 469 IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPEK 527
Query: 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQ 502
+ YV+L +Y S+ R + V + + KG++ P C+ IE+ H FF+GD HPQ
Sbjct: 528 LNN-YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQ 586
Query: 503 TKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGILNLKPG 562
+++IY LD + +++ GY + + D +D ++ S R HSE+LAIA G++N
Sbjct: 587 SREIYQKLDELMKEISEYGYVAE-ENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEW 645
Query: 563 MPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614
P+++ ++ R+CKDCH+V K I+ + EI+VRD +RFHHFK G CSC DYW
Sbjct: 646 TPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 7e-57
Identities = 117/353 (33%), Positives = 181/353 (51%), Gaps = 17/353 (4%)
Query: 77 FASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136
F F +L +A+ VF ++ + F+WN L+ A+ +A+ L+ RM+ G V PD +
Sbjct: 131 FVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK-AGYFDEALCLYHRMLWAG-VRPDVY 188
Query: 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
TFP L+ C + ++G++ HAH+ + G DV + N+LI Y CG + A VFD M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 197 LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF-EPDGYTFQSITSACAGLATLSLGM 255
R +SWN MI + + GE L+LF M+ L +PD T S+ SAC L LG
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315
H Y+++ DV V NSLI MY GS A +VF M +D SW ++I G+
Sbjct: 309 EMHGYVVK---TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
Query: 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375
+G + AL+ + L+ +++ SP+ IT VLSAC G + G V ++E
Sbjct: 366 KNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVG-----VKLHELAERKG 419
Query: 376 LEHY----GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHAS 424
L Y L+++ ++ ID+AL + N+P K D + W S++ +
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRC 471
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 6e-41
Identities = 98/313 (31%), Positives = 147/313 (46%), Gaps = 24/313 (7%)
Query: 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176
QA+ L + M E V D+ + + C + A +G + + V + N++
Sbjct: 69 QALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127
Query: 177 IHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ-ILFEPDG 235
+ + G L A VF M ER L SWNV++ + + G FD AL L+ RM PD
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295
YTF + C G+ L+ G HA+++R L DV+ N+LI MY KCG + AR V
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVV--NALITMYVKCGDVVSARLV 244
Query: 296 FESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGM 355
F+ MP+RD SWN++I G+ +G L+ F + E S P+ +T V+SAC G
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGD 303
Query: 356 VSEGRDY--------FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD 407
GR+ F V ++ N L+ + G+ EA + S M K D
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCN---------SLIQMYLSLGSWGEAEKVFSRMETK-D 353
Query: 408 AVIWRSLLDACCK 420
AV W +++ K
Sbjct: 354 AVSWTAMISGYEK 366
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 3e-37
Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 41/336 (12%)
Query: 103 TLIRACARSVDAKPQAIVLFQRMIE----------QGNVLPDKHTFPFALKACAYLFAFS 152
T IR S+ ++ + +V R E T+ ++AC L +
Sbjct: 81 TQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR 140
Query: 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212
K + H+ G D Y+ N ++ + CG L A ++FD M ER+L SW +I V
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLV 200
Query: 213 QFGEFDSALKLFRRM-QILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271
G + A LFR M + + + TF + A AGL + G H +L+ +V
Sbjct: 201 DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK---TGVVG 257
Query: 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALK-YFDRL 330
D V+ +LIDMY KCG ++ AR VF+ MP++ +WNS++ G+ALHG +E AL Y++
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYE-- 315
Query: 331 VVEESFSPNSITFVGVLSACN-----------HRGMVSEGRDYFDVMINEYNITPVLEHY 379
+ + S + TF ++ + H G++ G D++ N
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANT---------- 364
Query: 380 GCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLL 415
LVDL ++ G +++A ++ MP K + + W +L+
Sbjct: 365 -ALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALI 398
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-20
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 9/200 (4%)
Query: 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACA 109
+Q+H L+T + T + + I ++ D++ A VF + + WN+++ A
Sbjct: 244 QQLHCCVLKTGVVGD--TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 110 RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD 169
+A+ L+ M + G V D+ TF ++ + L KQAHA + + G D
Sbjct: 302 LH-GYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 170 VYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229
+ N +L+ Y+ G ++ A VFD M ++L+SWN +I + G A+++F RM
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM-- 417
Query: 230 LFE---PDGYTFQSITSACA 246
+ E P+ TF ++ SAC
Sbjct: 418 IAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-19
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 479 PGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA-----AMVD 533
PGC E + +GD SHP T + F + E G P+ + A
Sbjct: 1 PGCVWSEG----KKTLSGDGSHP-TSKEELFQRIKVE-----GVVPETKEIGHDVDAEEF 50
Query: 534 ELDDGKQSSLRLHSERLAIALGILNLKPGMPIRVFKNL-RVCKDCHEVTKLISRIFNVEI 592
+ K L H+E+ A+A G+L + K L R+C DCHE + I++ EI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLLTTRI------IKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 593 IVRDRARFHHFK 604
IVRD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACA 246
V++N +ID + + G+ + ALKLF M+ +P+ YT+ +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 60/300 (20%), Positives = 117/300 (39%), Gaps = 52/300 (17%)
Query: 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192
P TF + CA + + + GL +D + +LI A G +D +V
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 193 FDNM----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----FEPDGYTFQSITSA 244
F M +E ++ ++ +ID + G+ A F I+ +PD F ++ SA
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKA---FGAYGIMRSKNVKPDRVVFNALISA 551
Query: 245 C--AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302
C +G + + A ++ H + D + +L+ G +D A++V++ + +
Sbjct: 552 CGQSGAVDRAFDVLAE---MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362
+ I G P T +++C+ +G
Sbjct: 609 N-------IKGT-----------------------PEVYTI--AVNSCSQKGDWDFALSI 636
Query: 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACC 419
+D M + + P + LVD+ AG++D+A ++ + +K V + SL+ AC
Sbjct: 637 YDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 67/279 (24%), Positives = 111/279 (39%), Gaps = 56/279 (20%)
Query: 34 SSLLSSLTECKSMSQLKQIHAQALRTALPQQ--HKTLLI--YSRIIHFASFADLDYAFRV 89
S ++ + + KQ HA +RT P T L+ YS+ + ++ A V
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK------WGRMEDARNV 382
Query: 90 FYQIENPNSFTWNTLIRACA---RSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
F ++ N +WN LI R A+ +F+RMI +G V P+ TF L AC
Sbjct: 383 FDRMPRKNLISWNALIAGYGNHGRGTK----AVEMFERMIAEG-VAPNHVTFLAVLSACR 437
Query: 147 YLFAFSQGKQAHAHIFKRGLVSDVY-INNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205
Y QG + IF+ +S+ + I +H+ +C
Sbjct: 438 YSGLSEQGWE----IFQ--SMSENHRIKPRAMHY--AC---------------------- 467
Query: 206 VMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
MI+ + G D A + RR F+P + ++ +AC L LG A +
Sbjct: 468 -MIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524
Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL 304
L V+ L+++Y G A +V E++ ++ L
Sbjct: 525 PEKLNNYVV----LLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQ 228
V++N +I + + G+ + AL+LF+ M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146
P+ T+NTLI + + +A+ LF M ++G + P+ +T+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVE-EALKLFNEMKKRG-IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 169 DVYINNSLIHFYASCGHLDLANKVFDNMLERSL----VSWNVMIDAF 211
DV N+LI Y G ++ A K+F+ M +R + +++++ID
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 72/290 (24%), Positives = 115/290 (39%), Gaps = 61/290 (21%)
Query: 32 NHSSLLSSLTECKSMSQL---KQIHAQALRTA------LPQQHKTLLIYSRIIHFASFAD 82
N +L+++L+ C + L K+IHA LRT LP + L +Y R
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP--NALLDLYVRC------GR 539
Query: 83 LDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142
++YA+ F E + +WN L+ A+ LF RM+E G V PD+ TF L
Sbjct: 540 MNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGS-MAVELFNRMVESG-VNPDEVTFISLL 596
Query: 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202
AC+ +QG + F + I +L H YA
Sbjct: 597 CACSRSGMVTQGLE----YFHS-MEEKYSITPNLKH-YAC-------------------- 630
Query: 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262
++D + G+ A +M I PD + ++ +AC + LG A +I
Sbjct: 631 ----VVDLLGRAGKLTEAYNFINKMPI--TPDPAVWGALLNACRIHRHVELGELAAQHIF 684
Query: 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT-----SW 307
+S+ +L L ++Y G D +V ++M + LT SW
Sbjct: 685 ELDPNSVGYYIL----LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 379 YGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACCK 420
Y L+D + G ++EAL L + M +KP+ + L+D CK
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 277 NSLIDMYCKCGSLDIARQVFESMPKR----DLTSWNSIILGFA 315
N+LID YCK G ++ A ++F M KR ++ +++ +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350
D+ ++N++I G+ G+ E ALK F+ + + PN T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 8/210 (3%)
Query: 287 GSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346
G+L + R V E+ K D + ++I A G+ +A + F +V N TF +
Sbjct: 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGAL 513
Query: 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---- 402
+ C G V++ + +M ++ N+ P + L+ ++G +D A +++ M
Sbjct: 514 IDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET 572
Query: 403 -PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461
P+ PD + +L+ AC V ++EV + + E VY + + W+
Sbjct: 573 HPIDPDHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAH 491
+ M KGV + S +D H
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGH 661
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 202 VSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234
V++N +ID + G + AL+LF+ M+ EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 8e-04
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 277 NSLIDMYCKCGSLDIARQVFESMP 300
N+LID C+ G +D A ++ + M
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 195 NMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
L+ +V++N +ID + G D A++L M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 277 NSLIDMYCKCGSLDIARQVFESMPKRDL 304
NSLI YCK G L+ A ++F+ M ++ +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQ 228
L ++N ++ A + G+ D AL + M+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196
+GL DV N+LI G +D A ++ D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.51 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.37 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.36 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.33 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.31 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.28 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.21 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.17 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.17 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.11 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.03 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.01 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.98 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.97 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.96 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.96 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.92 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.73 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.72 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.71 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.66 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.59 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.55 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.53 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.47 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.42 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.4 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.35 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.34 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.27 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.24 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.23 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.13 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.95 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.91 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.91 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.86 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.79 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.73 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.6 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.44 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.3 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.25 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.17 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.09 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.97 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.91 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.79 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.64 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.37 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.32 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.01 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.77 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.67 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.67 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.61 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.54 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.45 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.44 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.29 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.17 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.14 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.88 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.8 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.75 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.02 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.77 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.5 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.35 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.92 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 92.84 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.69 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.65 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.22 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.94 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.8 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.49 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.41 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 90.36 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.56 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.92 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 88.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.65 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.33 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 87.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.75 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 86.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.52 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.38 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 85.87 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.85 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.82 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 85.78 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.78 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 85.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 85.07 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.99 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 84.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 84.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 84.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 82.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.6 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.49 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.19 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.92 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 80.45 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-118 Score=973.48 Aligned_cols=599 Identities=32% Similarity=0.589 Sum_probs=586.9
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcC-CCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEG-SFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIH 76 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g-~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~ 76 (614)
+|.+|.+.|++.+ |+++|.+|...+ +.||..||++++++|++.+.. +++|..+.+.|+. +| + .++|.|+.
T Consensus 93 ~i~~l~~~g~~~~---Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~-~-~~~n~Li~ 166 (697)
T PLN03081 93 QIEKLVACGRHRE---ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PD-Q-YMMNRVLL 166 (697)
T ss_pred HHHHHHcCCCHHH---HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cc-h-HHHHHHHH
Confidence 4789999999986 789999998754 789999999999999988766 8999999999999 89 8 99999999
Q ss_pred HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
+|.+ |+++.|.++|++|++||+++||++|.+|++. |++++|+++|++|.+.|.. ||..||+.++.+|+..|+.+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHH
Confidence 9999 9999999999999999999999999999999 9999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPD 234 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd 234 (614)
++|..+.+.|+.||..+||+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+. +.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGF 314 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 314 (614)
..||++++.+|++.|.++.|+++|..+.+. |+.||..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT---GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh---CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
+++|+.++|+++|++| ...|+.||..||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++||++|++.|++++
T Consensus 402 ~~~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 402 GNHGRGTKAVEMFERM-IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHcCCHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999 999999999999999999999999999999999998878999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
|.+++++|+++|+..+|++|+.+| ..+|+++.|..+++++.+.+|. +..+|+.|+++|++.|+|++|.++++.|+++|
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~-~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 9999999999999999999888 88999999999999999999999999999999
Q ss_pred CccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHHHHH
Q 038206 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIAL 554 (614)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 554 (614)
+++.|+++|+++++.+|.|+.||..||+.+++++.++++..+|++.||.||+..++ +++++++++..+.+||||||++|
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~-~~~~~~~~~~~~~~hsekla~a~ 637 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELL-PDVDEDEEKVSGRYHSEKLAIAF 637 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhh-ccccHHHHHHHHHhccHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhcCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEEecCCccccccCCccCCCCCC
Q 038206 555 GILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMDYW 614 (614)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~~~~w 614 (614)
|||.+|+|.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|||
T Consensus 638 ~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 638 GLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-114 Score=967.23 Aligned_cols=595 Identities=35% Similarity=0.657 Sum_probs=582.8
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
||.+|+++|++++ |+++|.+|...|+.||.+||++++++|+..++. +++|..+.+.|+. +| . .+||+||.+
T Consensus 259 li~~~~~~g~~~e---Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d-~-~~~n~Li~~ 332 (857)
T PLN03077 259 MISGYFENGECLE---GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA-VD-V-SVCNSLIQM 332 (857)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cc-h-HHHHHHHHH
Confidence 6899999999997 789999999999999999999999999988876 9999999999999 89 8 999999999
Q ss_pred Hhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 78 ASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|.+ |++++|.++|++|..||+++||++|.+|++. |++++|+++|++|.+.|+. ||..||++++.+|++.|+++.|.+
T Consensus 333 y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 333 YLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN-GLPDKALETYALMEQDNVS-PDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC-CCHHHHHHHHHHHHHhCCC-CCceeHHHHHHHHhccchHHHHHH
Confidence 999 9999999999999999999999999999999 9999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
+|+.+.+.|+.|+..+||+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|...++||..
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~ 490 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV 490 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999866999999
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 316 (614)
||+++|.+|++.|.++.++++|..+.+. |+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|++
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~---g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~ 566 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT---GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVA 566 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh---CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999999 9999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038206 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEAL 396 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (614)
+|+.++|+++|++| ...|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.
T Consensus 567 ~G~~~~A~~lf~~M-~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 567 HGKGSMAVELFNRM-VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred cCCHHHHHHHHHHH-HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999 89999999999999999999999999999999999877899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCc
Q 038206 397 HLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 397 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+++++|+++||..+|++|+.+| ..+++.+.|+.+.+++.++.|+ +...|..|.++|++.|+|++|.++++.|+++|++
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNAC-RIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999 9999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHHHHHhh
Q 038206 477 KEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLAIALGI 556 (614)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (614)
++|++||+++++.+|.|..||.+||+.+++++.++++..+|++.||.||+..++ ++ ++++|+..+++||||||++|||
T Consensus 724 k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~-~~~~k~~~~~~hse~la~a~~l 801 (857)
T PLN03077 724 VDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DE-IEVSKDDIFCGHSERLAIAFGL 801 (857)
T ss_pred CCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cc-cHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998876 44 7788999999999999999999
Q ss_pred cCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEEecCCccccccCCccCCCC
Q 038206 557 LNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIVRDRARFHHFKDGSCSCMD 612 (614)
Q Consensus 557 ~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~~g~~~~~~ 612 (614)
|++|++.||||+||||+|+|||+|+|+||++.+|+|||||.+|||||+||+|||+|
T Consensus 802 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 802 INTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-77 Score=667.20 Aligned_cols=575 Identities=24% Similarity=0.326 Sum_probs=514.7
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
||++|+++|++++ |+++|++|...|+.||.+||+++|++|+..+++ +++|..+++.|+. +| + .++|+||.+
T Consensus 158 li~~~~~~g~~~~---A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~-~~-~-~~~n~Li~~ 231 (857)
T PLN03077 158 LVGGYAKAGYFDE---ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE-LD-V-DVVNALITM 231 (857)
T ss_pred HHHHHHhCCCHHH---HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC-cc-c-chHhHHHHH
Confidence 6899999999997 789999999999999999999999999988776 8999999999999 89 8 999999999
Q ss_pred Hhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 78 ASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|++ |++++|.++|++|+.||+++||++|.+|++. |++++|+++|++|.+.|+. ||..||+.++.+|+..|+++.|.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~-g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN-GECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHH
Confidence 999 9999999999999999999999999999999 9999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCCh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDG 235 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~ 235 (614)
+|..+.+.|+.||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|++.|++++|+++|++|.+. +.||.
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988 99999
Q ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038206 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFA 315 (614)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 315 (614)
.||++++.+|++.|+++.|.++|+.+.+. |+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~---g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERK---GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
++|+.++|+++|++| .. +++||..||+++|.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|
T Consensus 467 ~~g~~~eA~~lf~~m-~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 467 LNNRCFEALIFFRQM-LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HCCCHHHHHHHHHHH-Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHH
Confidence 999999999999999 54 6999999999999999999999999999999987 69999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH-hCC
Q 038206 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT-DKG 474 (614)
Q Consensus 396 ~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g 474 (614)
.++|+++ .||..+|++||.+| .++|+.++|.++|++|.+.|..||..||+.++.+|++.|++++|.++|+.|. +.|
T Consensus 544 ~~~f~~~--~~d~~s~n~lI~~~-~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 544 WNQFNSH--EKDVVSWNILLTGY-VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHhc--CCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 9999998 79999999999999 9999999999999999999999999999999999999999999999999998 679
Q ss_pred CccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHHHH-HH
Q 038206 475 VTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSERLA-IA 553 (614)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~ 553 (614)
+.|+..++... +......|+.+++.+ ++++| +++||...+- .-+..+...+.+. -.|..+ ..
T Consensus 621 i~P~~~~y~~l--------v~~l~r~G~~~eA~~----~~~~m---~~~pd~~~~~-aLl~ac~~~~~~e-~~e~~a~~l 683 (857)
T PLN03077 621 ITPNLKHYACV--------VDLLGRAGKLTEAYN----FINKM---PITPDPAVWG-ALLNACRIHRHVE-LGELAAQHI 683 (857)
T ss_pred CCCchHHHHHH--------HHHHHhCCCHHHHHH----HHHHC---CCCCCHHHHH-HHHHHHHHcCChH-HHHHHHHHH
Confidence 99988776543 333445678888866 55566 4789865432 2222222111111 012211 23
Q ss_pred HhhcCCCCCCcEEEEeccccccchhhHHHHhhhccCceEEE-------ecCCccccccCCccC
Q 038206 554 LGILNLKPGMPIRVFKNLRVCKDCHEVTKLISRIFNVEIIV-------RDRARFHHFKDGSCS 609 (614)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~c~~~~~a~~~~~~~~~~~~~~-------~~~~~~h~~~~g~~~ 609 (614)
+.+.+...+..+.+...|...|+.++|.++...|..+.+.- --.+..|-|..|--+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 44555555555666677889999999999999997763221 112456777666443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=548.83 Aligned_cols=438 Identities=17% Similarity=0.235 Sum_probs=409.9
Q ss_pred CChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCC----CCChhhHH
Q 038206 31 NNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIE----NPNSFTWN 102 (614)
Q Consensus 31 p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~----~~~~~~~~ 102 (614)
||..||+.+|++|++.++. .+++..|.+.|+. +| . .+||.||.+|++ |++++|.++|++|. .||.++||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-pD-~-~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-AD-C-KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CC-H-HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8889999999999888876 8999999999999 89 8 999999999999 99999999999998 48999999
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH--hCCCCchhHHHHHHHHH
Q 038206 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK--RGLVSDVYINNSLIHFY 180 (614)
Q Consensus 103 ~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~ 180 (614)
++|.+|++. |++++|+++|++|.+.|+. ||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|
T Consensus 512 aLI~gy~k~-G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARA-GQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 999999999 9999999999999999999 9999999999999999999999999999987 67999999999999999
Q ss_pred HhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHH
Q 038206 181 ASCGHLDLANKVFDNMLE----RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGM 255 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~ 255 (614)
+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|... +.||..||++++.+|++.|+++.|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999954 56799999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038206 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLV 331 (614)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (614)
+++..+.+. |+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|
T Consensus 670 ~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM- 745 (1060)
T PLN03218 670 EILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM- 745 (1060)
T ss_pred HHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 999999999 999999999999999999999999999999995 689999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH----HcC-----------------
Q 038206 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA----RAG----------------- 390 (614)
Q Consensus 332 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g----------------- 390 (614)
...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++|++++. +++
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~ 824 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIE 824 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccc
Confidence 9999999999999999999999999999999999977 599999999999998743 332
Q ss_pred --CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 391 --NIDEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 391 --~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
..++|..+|++| ++.||..||+.+|.++ .+.+..+.+..+++.+...+..|+..+|++|++++.+. .++|..
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl-~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~ 901 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCL-QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFS 901 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHH
Confidence 236799999999 7899999999999665 78888999999998888777778899999999998432 368999
Q ss_pred HHHHHHhCCCccCCCc
Q 038206 466 VRKLMTDKGVTKEPGC 481 (614)
Q Consensus 466 ~~~~m~~~g~~~~~~~ 481 (614)
++++|...|+.|+...
T Consensus 902 l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 902 LLEEAASLGVVPSVSF 917 (1060)
T ss_pred HHHHHHHcCCCCCccc
Confidence 9999999999998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=544.76 Aligned_cols=497 Identities=16% Similarity=0.221 Sum_probs=388.1
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCC-CCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGS-FNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF 80 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~ 80 (614)
+..|++.|++++ |+++|++|...|+ .|+..++..++..|...+........... -.. +| . .+||.||..|++
T Consensus 377 y~~l~r~G~l~e---Al~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M~~-pd-~-~Tyn~LL~a~~k 449 (1060)
T PLN03218 377 YNRLLRDGRIKD---CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-IRN-PT-L-STFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHCcCHHH---HHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-cCC-CC-H-HHHHHHHHHHHh
Confidence 456777777775 6788888887775 46777777777777766655333322222 123 56 6 888888888888
Q ss_pred -CChhHHHHHHhcCCC----CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 81 -ADLDYAFRVFYQIEN----PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
|+++.|.++|+.|.+ ||..+||++|.+|++. |++++|.++|++|.+.|+. ||..||+.+|.+|++.|++++|.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~-G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS-GKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHH
Confidence 888888888888864 7888888888888888 8888888888888888877 88888888888888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888883 46788888888888888888888888888887
Q ss_pred c-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----CCCH
Q 038206 230 L-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP----KRDL 304 (614)
Q Consensus 230 ~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~ 304 (614)
. +.|+..+|+++|.+|++.|++++|..++..|.+. |+.||..+|++|+++|++.|++++|.++|+.|. .||.
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~---Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK---GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 7 8888888888888888888888888888888887 888888888888888888888888888888876 4678
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
.+|++||.+|++.|++++|.++|++| ...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.|+.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM-~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 88888888888888888888888888 7778888888888888888888888888888888865 588888888888888
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHh-----------------------cCchHHHHHHHHHHHHh
Q 038206 385 LLARAGNIDEALHLVSNM---PMKPDAVIWRSLLDACCKK-----------------------HASVVLSEEVAKQVIES 438 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~-----------------------~~~~~~a~~~~~~~~~~ 438 (614)
+|++.|++++|.++|++| ++.||..+|++|+..| .+ .+..+.|..+|++|.+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc-~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC-LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 888888888888888887 6778888888887654 32 12245688888888888
Q ss_pred cCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 038206 439 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518 (614)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 518 (614)
|..||..||+.++.++.+.+.++.+..+++.|...+..++..++..++++. ..+ ..+|+. ++++|.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--------~~~--~~~A~~----l~~em~ 907 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--------GEY--DPRAFS----LLEEAA 907 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--------ccC--hHHHHH----HHHHHH
Confidence 888888888888877777788888888887777777666666665544431 111 245654 788899
Q ss_pred hCCccCCCC
Q 038206 519 SRGYTPDYS 527 (614)
Q Consensus 519 ~~g~~p~~~ 527 (614)
..|+.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 999999965
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=541.59 Aligned_cols=487 Identities=21% Similarity=0.307 Sum_probs=429.8
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINN 174 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (614)
++..+|+.+|.++.+. |++++|+++|++|...+ .. ||..||+.++.+|++.++++.|.++|..|.+.|+.||..+||
T Consensus 85 ~~~~~~~~~i~~l~~~-g~~~~Al~~f~~m~~~~~~~-~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVAC-GRHREALELFEILEAGCPFT-LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcC-CCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 6778999999999999 99999999999999875 45 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhH
Q 038206 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+. +.||..||+.++.+|++.+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE 333 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (614)
+.++|..+.+. |+.+|..+||+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++| ..
T Consensus 243 ~~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~ 318 (697)
T PLN03081 243 GQQLHCCVLKT---GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RD 318 (697)
T ss_pred HHHHHHHHHHh---CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HH
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 038206 334 ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRS 413 (614)
Q Consensus 334 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 413 (614)
.|+.||..||++++.+|++.|++++|.+++..|.+ .|+.|+..+|++||++|+++|++++|.++|++|. +||..+|++
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 99999999999999999999999999999999987 5999999999999999999999999999999997 689999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh-CCCccCCCccEEEECCEEEE
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD-KGVTKEPGCSSIEIDGIAHE 492 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~ 492 (614)
||.+| .++|+.++|.++|++|.+.|..||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..++...
T Consensus 397 lI~~y-~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l------- 468 (697)
T PLN03081 397 LIAGY-GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM------- 468 (697)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH-------
Confidence 99999 99999999999999999999999999999999999999999999999999976 5999987776643
Q ss_pred EEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhhhcccccccHH-HHHHHhhcCCCCCCcEEEEecc
Q 038206 493 FFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGKQSSLRLHSER-LAIALGILNLKPGMPIRVFKNL 571 (614)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~ 571 (614)
+.+....|+.+++.+. ++ +.++.||..+.. .-+..+.+.+.+.. .+. ....+++.+......+.+++.|
T Consensus 469 -i~~l~r~G~~~eA~~~----~~---~~~~~p~~~~~~-~Ll~a~~~~g~~~~-a~~~~~~l~~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 469 -IELLGREGLLDEAYAM----IR---RAPFKPTVNMWA-ALLTACRIHKNLEL-GRLAAEKLYGMGPEKLNNYVVLLNLY 538 (697)
T ss_pred -HHHHHhcCCHHHHHHH----HH---HCCCCCCHHHHH-HHHHHHHHcCCcHH-HHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 3344567888888763 33 347888865432 22222222221110 111 1112344444444566777889
Q ss_pred ccccchhhHHHHhhhccCceEEEec-------CCccccccCCcc
Q 038206 572 RVCKDCHEVTKLISRIFNVEIIVRD-------RARFHHFKDGSC 608 (614)
Q Consensus 572 ~~c~~~~~a~~~~~~~~~~~~~~~~-------~~~~h~~~~g~~ 608 (614)
..+|+..+|.+++.+|..+.+...+ .+..|.|-.|-.
T Consensus 539 ~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 539 NSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999999999988653221 234566665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-24 Score=247.99 Aligned_cols=447 Identities=11% Similarity=0.074 Sum_probs=241.9
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF 80 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~ 80 (614)
.|...|++++ |++.|..+......+. .....+...+...++. ..+...+.+.. + .+ + .+++.+...|..
T Consensus 406 ~~~~~~~~~~---A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~-~~-~-~~~~~l~~~~~~ 477 (899)
T TIGR02917 406 SKLSQGDPSE---AIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQ-P-DN-A-SLHNLLGAIYLG 477 (899)
T ss_pred HHHhCCChHH---HHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C-CC-c-HHHHHHHHHHHh
Confidence 4555666665 4466665544322211 1112222223233332 33333333322 2 34 4 556666666666
Q ss_pred -CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 81 -ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|++++|.+.|+++.+ .+...+..+...+... |++++|.+.|+++...+ + .+..++..+...+...|+.++|..
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVLTID-P-KNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-c-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665432 2344455555556665 66666666666666554 1 244455555566666666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
.+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++....+.
T Consensus 555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 666665544 33444555566666666666666666665532 24455666666666666666666666666544333
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHH
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSI 310 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~l 310 (614)
+...+..+..++...|+.+.|...+..+.+. .+.+...+..+...+.+.|++++|.++++.+.+ .+...|..+
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 4445555556666666666666666665543 233345556666666666666666666665542 244455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
...+...|++++|++.|+++ ... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~-~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g 784 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKA-LKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQK 784 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHH-Hhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCc
Confidence 55666666666666666655 332 23334455555556666666666666665544 23334555555666666666
Q ss_pred CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 391 NIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
++++|.+.|+++ .. .++..+++.+...+ ...|+ ++|+..++++.+..|. ++..+..+..+|...|++++|.++++
T Consensus 785 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 785 DYDKAIKHYRTVVKKAPDNAVVLNNLAWLY-LELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666554 11 22444555555555 55555 4455555555555555 45555555555555555555555555
Q ss_pred HHHhCC
Q 038206 469 LMTDKG 474 (614)
Q Consensus 469 ~m~~~g 474 (614)
++.+.+
T Consensus 862 ~a~~~~ 867 (899)
T TIGR02917 862 KAVNIA 867 (899)
T ss_pred HHHhhC
Confidence 555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-24 Score=244.32 Aligned_cols=447 Identities=11% Similarity=-0.000 Sum_probs=366.3
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCCCCC-hhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHH
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNN-HSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHF 77 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~~p~-~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~ 77 (614)
...|.+.|++++ |++.|+++.+. .|+ ...+..+-..+...++. ...+....+... .+ . .....++..
T Consensus 370 ~~~~~~~g~~~~---A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-~-~~~~~l~~~ 440 (899)
T TIGR02917 370 GEAYLALGDFEK---AAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--EL-G-RADLLLILS 440 (899)
T ss_pred HHHHHHCCCHHH---HHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cc-h-hhHHHHHHH
Confidence 356788899986 67889888654 343 33333333333333433 455555555442 23 4 667778888
Q ss_pred Hhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 78 ASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 78 ~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
|.+ |++++|.++++.+.. ++..+|+.+...+... |++++|...|+++.+.. + .+...+..+...+...|++++
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-GDLAKAREAFEKALSIE-P-DFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-CCHHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHCCCHHH
Confidence 888 999999999998864 4677899999999999 99999999999998875 2 345567778888899999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 154 GKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
|.++++.+.+.+ +.+..++..+...|.+.|+.++|..+|+++.+ .+...+..++..|.+.|++++|+.+++++...
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999998876 45678899999999999999999999998833 35667888999999999999999999999876
Q ss_pred cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHH
Q 038206 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSW 307 (614)
Q Consensus 231 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~ 307 (614)
.+.+..++..+..++...|+++.+...+..+.+. .+.+...+..+...|.+.|++++|..+|+++. ..+..+|
T Consensus 597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 6677888999999999999999999999999875 34466788899999999999999999999875 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
..+...+...|++++|.++++.+ .... +++...+..+...+...|++++|...|+.+.. ..|+..++..+..++.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSL-QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHH
Confidence 99999999999999999999998 5543 44567777788889999999999999999875 3466677888999999
Q ss_pred HcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 388 RAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
+.|++++|.+.++++ ... .+...+..+...+ ...|+.++|.+.|+++.+..|+ ++.++..+..+|...|+ .+|..
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~ 824 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALE 824 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHH
Confidence 999999999999887 223 4677788888777 8899999999999999999998 88999999999999999 88999
Q ss_pred HHHHHHhC
Q 038206 466 VRKLMTDK 473 (614)
Q Consensus 466 ~~~~m~~~ 473 (614)
.+++..+.
T Consensus 825 ~~~~~~~~ 832 (899)
T TIGR02917 825 YAEKALKL 832 (899)
T ss_pred HHHHHHhh
Confidence 99988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-27 Score=190.14 Aligned_cols=106 Identities=56% Similarity=0.922 Sum_probs=94.5
Q ss_pred CccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcccccCCchhhh--------hcccccccHHHH
Q 038206 480 GCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQAAMVDELDDGK--------QSSLRLHSERLA 551 (614)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~a 551 (614)
+++|+.+ |.|+.||.+||+. ++..+|...||.|++..++ ++++++++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG-HDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC-CCchhhhhhhcccccchhhhhccHHHHH
Confidence 5778765 8899999999988 3556788899999999888 77666554 568899999999
Q ss_pred HHHhhcCCCCCCcEEEEecc-ccccchhhHHHHhhhccCceEEEecCCcccccc
Q 038206 552 IALGILNLKPGMPIRVFKNL-RVCKDCHEVTKLISRIFNVEIIVRDRARFHHFK 604 (614)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~-~~c~~~~~a~~~~~~~~~~~~~~~~~~~~h~~~ 604 (614)
++|||+++ +|+||+ |+|+|||+++|+||++.+|+|+|||++|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999996
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=178.70 Aligned_cols=298 Identities=16% Similarity=0.134 Sum_probs=178.1
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD---VYINNSLIHFYASC 183 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 183 (614)
.+... |++++|+..|+++.+.+ + .+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.
T Consensus 44 ~~~~~-~~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLN-EQPDKAIDLFIEMLKVD-P-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhc-CChHHHHHHHHHHHhcC-c-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34455 77777888887777765 1 2334666677777777777777777777766432221 23466667777777
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 184 GHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 184 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
|++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+... .|+..
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~------------------------ 175 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSL------------------------ 175 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcc------------------------
Confidence 777777777777644 34556777777777777777777777766532 00000
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCC
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 337 (614)
.......+..+...+.+.|++++|...|+++.+ | +...+..+...|.+.|++++|.++|+++ ...+..
T Consensus 176 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~ 246 (389)
T PRK11788 176 --------RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV-EEQDPE 246 (389)
T ss_pred --------hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHChh
Confidence 000011244556666777777777777776542 2 3456666667777777777777777776 432211
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038206 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLD 416 (614)
Q Consensus 338 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 416 (614)
....++..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 12344556666666677777777766666442 344445566666666666666666666554 44566666666665
Q ss_pred HHHHh--cCchHHHHHHHHHHHHhcCCCCc
Q 038206 417 ACCKK--HASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 417 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.++.. +|+.+++..+++++.+.++.|++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55211 33556666666666655444333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-16 Score=181.23 Aligned_cols=493 Identities=11% Similarity=0.025 Sum_probs=297.4
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhh---HHHHH-HhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSS---LLSSL-TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS 79 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~---~~~~l-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~ 79 (614)
.+.+.|++++ |++.|+..... ..|+... |...+ ..-.+...+......+++.. |.+ + .++..|...+.
T Consensus 121 ll~~~g~~~e---A~~~~~~~l~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~-~-~~~~~LA~ll~ 192 (1157)
T PRK11447 121 LLATTGRTEE---ALASYDKLFNG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGN-T-GLRNTLALLLF 192 (1157)
T ss_pred HHHhCCCHHH---HHHHHHHHccC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCC-H-HHHHHHHHHHH
Confidence 4677899987 66888887654 2333221 11111 11122333455555555543 255 6 78888888888
Q ss_pred c-CChhHHHHHHhcCCC-CC-----hhh-----------------HH---------------------------------
Q 038206 80 F-ADLDYAFRVFYQIEN-PN-----SFT-----------------WN--------------------------------- 102 (614)
Q Consensus 80 ~-g~~~~A~~~f~~m~~-~~-----~~~-----------------~~--------------------------------- 102 (614)
. |+.++|.+.|+++.. +. ... +.
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 8 999999999987632 10 000 10
Q ss_pred -HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch-hHH-------
Q 038206 103 -TLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDV-YIN------- 173 (614)
Q Consensus 103 -~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------- 173 (614)
..-..+... |++++|+..|++..+.. + .+...+..+..++...|++++|...+++.++....... ..+
T Consensus 273 ~~~G~~~~~~-g~~~~A~~~l~~aL~~~-P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 273 RAQGLAAVDS-GQGGKAIPELQQAVRAN-P-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 011234556 88888888888888765 1 25667777778888888888888888888775532211 111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 174 -----NSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 174 -----~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|++.|++..+..+.+...+..+...+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1223456778888888888887733 24556777888888888888888888888765233333333332222
Q ss_pred ------------------------------------------HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 246 ------------------------------------------AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 246 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
...|+.++|...++...+. .+.+..++..+...|
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDL 505 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 2344555555555555443 122334444555555
Q ss_pred HhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH---------HHHHHHHHHh
Q 038206 284 CKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI---------TFVGVLSACN 351 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~---------t~~~ll~a~~ 351 (614)
.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++.+ ......++.. .+......+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l-~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL-PRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC-CchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555442 12 3333333333344455555555555544 2211111111 1122344556
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..|+.++|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+ ...|+.++|+
T Consensus 585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~ 657 (1157)
T PRK11447 585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAAR 657 (1157)
T ss_pred HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHH
Confidence 66777777766551 2345566778889999999999999999887 3445 577888888888 8889999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHH
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGF 509 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (614)
+.++.+.+..|. +...+..+..++...|++++|.++++++....-..++......+-.. ...-....++.+++.+.
T Consensus 658 ~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~---~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 658 AQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRD---AARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHH---HHHHHHHcCCHHHHHHH
Confidence 999999888877 77778888899999999999999999887653222221100000000 00001135677777776
Q ss_pred HHHHHHHHhhCCccCCC
Q 038206 510 LDLIDEKLKSRGYTPDY 526 (614)
Q Consensus 510 ~~~l~~~m~~~g~~p~~ 526 (614)
+++. |...|+.|+.
T Consensus 734 y~~A---l~~~~~~~~~ 747 (1157)
T PRK11447 734 YKDA---MVASGITPTR 747 (1157)
T ss_pred HHHH---HhhcCCCCCC
Confidence 6554 4455776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-15 Score=175.59 Aligned_cols=406 Identities=12% Similarity=0.041 Sum_probs=295.8
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CCh---hhHHHH------------HHHHHcC
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNS---FTWNTL------------IRACARS 111 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~~~~~~ 111 (614)
...+...++.. |.+ + .++..|...|.+ |++++|+..|++..+ |+. ..|..+ -..+.+.
T Consensus 289 ~~~l~~aL~~~--P~~-~-~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 289 IPELQQAVRAN--PKD-S-EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHhC--CCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 44455555433 245 6 777777777777 888888888877654 321 223222 2245566
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|++++|+..|++..+.. + .+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++|..
T Consensus 365 -g~~~eA~~~~~~Al~~~-P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 365 -NNLAQAERLYQQARQVD-N-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred -CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 88888888888888775 1 244556667777888888888888888888754 234455666666664 456788888
Q ss_pred HHhhcCCCC------------hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHH
Q 038206 192 VFDNMLERS------------LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHA 259 (614)
Q Consensus 192 ~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~ 259 (614)
+++.+.... ...+..+...+...|++++|++.|++..+..+-+...+..+...+...|+.++|...++
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~ 519 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 887764321 12345566778889999999999999887644455667788888999999999999999
Q ss_pred HHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----CHH---------HHHHHHHHHHhcCCHHHHHHH
Q 038206 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR----DLT---------SWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----~~~---------~~~~li~~~~~~g~~~~A~~l 326 (614)
.+.+. .+.+...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|+++
T Consensus 520 ~al~~----~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 520 RLAQQ----KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHc----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99874 2334555555666778899999999999988632 111 123456678899999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
++. .+++...+..+...+.+.|+.++|...|+...+. -+.+...+..++..|...|++++|++.++.. ...
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 862 2334455667788899999999999999999763 3346788899999999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHhhcCChhhHHHHHHHHH-hCCCcc
Q 038206 406 P-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS-----GVYVLLSRVYASARRWNDVGLVRKLMT-DKGVTK 477 (614)
Q Consensus 406 p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~ 477 (614)
| +..++..+..++ ...|++++|.++++++++..+...+ ..+..+..++...|++++|...+++.. ..|+.|
T Consensus 668 p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 NDSLNTQRRVALAW-AALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CCChHHHHHHHHHH-HhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 5 455666677777 8899999999999999987665222 355667889999999999999998874 335543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=170.98 Aligned_cols=291 Identities=13% Similarity=0.134 Sum_probs=216.1
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-------hhHHHHHHHHHHhcCC
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS-------LVSWNVMIDAFVQFGE 216 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~ 216 (614)
.+...|++++|...+..+.+.+ +.+..++..+...|.+.|++++|..+++.+.... ...|..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445567777777777777654 2344566667777777777777777776663321 1345666666777777
Q ss_pred hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHH
Q 038206 217 FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (614)
+++|..+|+++.+. .+.+..+++.++..|.+.|++++|.+.|
T Consensus 123 ~~~A~~~~~~~l~~--------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 123 LDRAEELFLQLVDE--------------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHcC--------------------------------------CcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 77777777666532 2234556777777777778888887777
Q ss_pred hcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 038206 297 ESMPKR--D------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 297 ~~m~~~--~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
+.+.+. + ...|..+...+.+.|+.++|.+.|+++ ... .|+ ...+..+...+.+.|++++|.++++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA-LAA--DPQCVRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 776532 1 124566777888999999999999998 443 344 4567778888999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 368 NEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+. .-......++.++.+|.+.|++++|.+.++++ ...|+...+..+...+ .+.|++++|..+++++.+..|+ ..+
T Consensus 242 ~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~-~~~g~~~~A~~~l~~~l~~~P~--~~~ 317 (389)
T PRK11788 242 EQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL-EEQEGPEAAQALLREQLRRHPS--LRG 317 (389)
T ss_pred HH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCcC--HHH
Confidence 53 21222466889999999999999999999987 4568877788888888 9999999999999999998655 567
Q ss_pred HHHHHHHHhh---cCChhhHHHHHHHHHhCCCccCCC
Q 038206 447 YVLLSRVYAS---ARRWNDVGLVRKLMTDKGVTKEPG 480 (614)
Q Consensus 447 ~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 480 (614)
+..++..+.. .|+.+++..++++|.++++.++|.
T Consensus 318 ~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 318 FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777664 569999999999999999999887
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-17 Score=158.51 Aligned_cols=376 Identities=13% Similarity=0.131 Sum_probs=310.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH-H
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL-K 143 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~ 143 (614)
..|+.+.+.+.. |++++|..+++.+.+ ..+..|..+-.++... |+.+.|...|.+.++.+ |+.....+-+ .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~-~~~~~a~~~~~~alqln---P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQ-GDLELAVQCFFEALQLN---PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhc-CCCcccHHHHHHHHhcC---cchhhhhcchhH
Confidence 678889998888 999999999998876 3567898899999999 99999999999999877 7765443333 3
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERS---LVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A 220 (614)
.....|++++|...+.+.++... --..+|+.|-..+-..|++..|+.-|++..+-| ...|-.|...|...+.+++|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence 34457899999999998887542 235678999999999999999999999986654 35788899999999999999
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 221 ~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
+..|.+....-+-....+..+...|-..|.++.|...++..+.. .|+ +..|+.|.+++-..|++.+|.+.+++.
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99998887653445667777777888999999999999999864 454 678999999999999999999999987
Q ss_pred C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC
Q 038206 300 P--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV 375 (614)
Q Consensus 300 ~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 375 (614)
. .| ...+.+-|...|...|.+++|..+|... ..+.|.. ..++.|...|-+.|++++|..-+++.+ .+.|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~ 420 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPT 420 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCch
Confidence 6 23 4567888999999999999999999865 3366765 678889999999999999999999885 67786
Q ss_pred -hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 376 -LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ....+.|-+.+ ...|++.+|++.++..+++.|+ -+..|..++.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh 498 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLH 498 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHHHHHHHHHHccCCC-CchhhhHHHH
Confidence 578999999999999999999988876 67775 45778888888 9999999999999999999999 6777766665
Q ss_pred HHhhcCChhh
Q 038206 453 VYASARRWND 462 (614)
Q Consensus 453 ~~~~~g~~~~ 462 (614)
+.---.+|.+
T Consensus 499 ~lq~vcdw~D 508 (966)
T KOG4626|consen 499 CLQIVCDWTD 508 (966)
T ss_pred HHHHHhcccc
Confidence 5544344443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-15 Score=164.78 Aligned_cols=384 Identities=9% Similarity=0.051 Sum_probs=268.7
Q ss_pred HHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC
Q 038206 74 IIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA 150 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 150 (614)
+...|.+ |+++.|...|++... |+...|..+-.+|.+. |++++|++.+...++.. + .+...+..+..++...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l-~~~~~Ai~~~~~al~l~-p-~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNAL-GDWEKVVEDTTAALELD-P-DYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCC
Confidence 3444445 788888888877543 6666777777777777 88888888887777765 1 234567777777778888
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH-----------------------
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM----------------------- 207 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----------------------- 207 (614)
+++|..-+..+...+-..+..... ++.-+.+......+...++.-+. +..++..+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 888877776555443222221111 11111111112222222222111 11111110
Q ss_pred -------HHHH------HhcCChhHHHHHHHHhhhc--cCC-ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc
Q 038206 208 -------IDAF------VQFGEFDSALKLFRRMQIL--FEP-DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT 271 (614)
Q Consensus 208 -------i~~~------~~~g~~~~A~~~~~~m~~~--~~p-d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~ 271 (614)
+..+ ...+++++|++.|++.... ..| +...+..+...+...|+++.|...++.+++. -+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~ 363 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPR 363 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC
Confidence 0000 1236788999999988764 334 3456677777778899999999999999874 223
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVL 347 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll 347 (614)
....|..+...|...|++++|...|++.. ..+...|..+...+...|++++|+..|++. .. +.|+ ...+..+.
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka-l~--l~P~~~~~~~~la 440 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKS-ID--LDPDFIFSHIQLG 440 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--cCccCHHHHHHHH
Confidence 35678888999999999999999998765 336788999999999999999999999987 44 3454 45666777
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHH
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-------V-IWRSLLDAC 418 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~ 418 (614)
.++.+.|++++|...|+...+ ..+.+...++.+...+...|++++|.+.|++. ...|+. . .++..+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 788999999999999999875 33446788899999999999999999999885 333421 1 122222233
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|++++|.+.++++++.+|. +...+..+..+|.+.|++++|.+.|++..+.
T Consensus 519 -~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 -QWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred -HHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4568999999999999999988 7778999999999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-14 Score=155.71 Aligned_cols=391 Identities=10% Similarity=0.010 Sum_probs=228.7
Q ss_pred HHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcC
Q 038206 36 LLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARS 111 (614)
Q Consensus 36 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 111 (614)
|..+....+....+..++...... .|.+ . ..+..+...+.. |++++|..+|++... | +...+..+...+...
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~--~~~~-a-~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH--MQLP-A-RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 555555555554445555554442 2133 4 567777777777 888888888877432 3 455566666777777
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|++++|+..+++..+.. |+...+..+..++...|+.++|...++.+++... .+...+..+..++.+.|..+.|++
T Consensus 97 -g~~~eA~~~l~~~l~~~---P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 97 -GQYDEALVKAKQLVSGA---PDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred -CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHH
Confidence 88888888888887765 4332266666677778888888888888877642 244555567777777788888888
Q ss_pred HHhhcCCCChh--------HHHHHHHHHH-----hcCCh---hHHHHHHHHhhhc--cCCChh-hHHH----HHHHHHhh
Q 038206 192 VFDNMLERSLV--------SWNVMIDAFV-----QFGEF---DSALKLFRRMQIL--FEPDGY-TFQS----ITSACAGL 248 (614)
Q Consensus 192 ~f~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~--~~pd~~-t~~~----ll~a~~~~ 248 (614)
.++.... +.. ....++.... ..+++ ++|++.++.+... ..|+.. .+.. .+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 8877654 211 1112222221 11223 5677777777644 222221 1111 12334455
Q ss_pred CchhHHHHHHHHHHHhccCCCC-ccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCH
Q 038206 249 ATLSLGMWAHAYILRHCDHSLV-TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSIILGFALHGRA 320 (614)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~ 320 (614)
++.++|...++.+.+. +-+ |+. ....+...|...|++++|+..|+++.+.+ ...+..+..++...|++
T Consensus 251 g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 251 DRYKDVISEYQRLKAE---GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 6777777777776654 311 211 12224556777777777777777654211 23344555566777777
Q ss_pred HHHHHHHHHHhhhcC-----------CCccH---HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 038206 321 EAALKYFDRLVVEES-----------FSPNS---ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (614)
++|.++++.+ .... -.|+. ..+..+...+...|++++|.+.++.+.. ..+.+...+..+...+
T Consensus 327 ~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 327 PGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVL 403 (765)
T ss_pred HHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 7777777766 3321 11221 1233444556666777777777777654 2333556666777777
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch
Q 038206 387 ARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
...|++++|++.+++. ...|+ ...+..+...+ ...+++++|+.+++++++..|+ ++.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a-l~~~~~~~A~~~~~~ll~~~Pd-~~~ 462 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTA-LDLQEWRQMDVLTDDVVAREPQ-DPG 462 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCC-CHH
Confidence 7777777777777665 34454 33444444444 6666777777777777777666 443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-14 Score=157.11 Aligned_cols=393 Identities=8% Similarity=-0.008 Sum_probs=288.4
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA 144 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 144 (614)
....-.+....- |+.++|.+++.+... .+...+..+...+... |++++|.++|++..+.. + .+...+..+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~-g~~~~A~~~~~~al~~~-P-~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL-KQWQNSLTLWQKALSLE-P-QNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHH
Confidence 344445555556 999999999988764 3444588888889898 99999999999998875 2 345567777788
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHH
Q 038206 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 221 (614)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...+++..+ | +...+..+...+...|..++|+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 899999999999999999874 44555 88889999999999999999999843 3 4556777888888999999999
Q ss_pred HHHHHhhhccCCChh------hHHHHHHHHH-----hhCch---hHHHHHHHHHHHhccCCCCcccc-HH-HH---HHHH
Q 038206 222 KLFRRMQILFEPDGY------TFQSITSACA-----GLATL---SLGMWAHAYILRHCDHSLVTDVL-VN-NS---LIDM 282 (614)
Q Consensus 222 ~~~~~m~~~~~pd~~------t~~~ll~a~~-----~~~~~---~~~~~~~~~~~~~~~~g~~~~~~-~~-~~---li~~ 282 (614)
+.++.... .|+.. .....+.... ..+.+ +.|...++.+.+.. ...|+.. .+ .. .+..
T Consensus 171 ~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~--~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW--HDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc--ccCCccchHHHHHHHHHHHH
Confidence 99987654 33310 1111222221 11223 55666666666531 1122211 11 11 1234
Q ss_pred HHhcCCHHHHHHHHhcCCCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCc--cHHHHHHHHHHHhccCC
Q 038206 283 YCKCGSLDIARQVFESMPKRD---L-TSWNSIILGFALHGRAEAALKYFDRLVVEES-FSP--NSITFVGVLSACNHRGM 355 (614)
Q Consensus 283 y~~~g~~~~A~~~~~~m~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p--~~~t~~~ll~a~~~~g~ 355 (614)
+...|++++|...|+.+.+.+ + ..-..+...|...|++++|+..|+++ .... ..+ .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~-l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL-FYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH-hhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 457799999999999988532 1 11122467899999999999999988 4322 111 12445666778899999
Q ss_pred HHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYN----------ITPV---LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCK 420 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 420 (614)
+++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+ .
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~-~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL-Q 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H
Confidence 9999999999975311 1122 234567888999999999999999987 3334 567788888888 9
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..|++++|++.++++++..|+ +...+..++..+.+.|++++|..+++++.+.
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999 8888889999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-14 Score=155.53 Aligned_cols=326 Identities=12% Similarity=0.059 Sum_probs=222.8
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 102 ~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
-.++..+.+. |++++|+.+++........ +...+..++.++...|+++.|.+.++.+.+.. +.+...+..+...+.
T Consensus 46 ~~~~~~~~~~-g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 46 ILFAIACLRK-DETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHhc-CCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3455666677 8888888888777776522 23344445555666788888888888877754 334556777777788
Q ss_pred hcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHH
Q 038206 182 SCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
+.|++++|...|++..+ | +...|..+...+...|++++|...++++....+.+...+.. +..+...|++++|...+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHH
Confidence 88888888888877633 3 45577777778888888888888887665442222222222 23466778888888777
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHH----HHHHHHHHh
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEA----ALKYFDRLV 331 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~ 331 (614)
..+.+. ...++......+...+.+.|++++|...|+...+ .+...+..+...|.+.|+.++ |+..|++.
T Consensus 201 ~~~l~~---~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A- 276 (656)
T PRK15174 201 RALLPF---FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA- 276 (656)
T ss_pred HHHHhc---CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH-
Confidence 776654 2223334445556777888888888888877652 356677778888888888875 78888876
Q ss_pred hhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 038206 332 VEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAV 409 (614)
Q Consensus 332 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 409 (614)
.. ..|+. ..+..+...+...|++++|...++...+. -+.+...+..+...|.+.|++++|.+.++++ ...|+..
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 33 34543 56677777788888888888888887652 2224556667788888888888888888876 3456654
Q ss_pred HHHH-HHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRS-LLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+.. +..++ ...|+.++|...|+++.+..|+
T Consensus 353 ~~~~~~a~al-~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAAL-LQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhChh
Confidence 4443 34455 7788888888888888888776
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-16 Score=151.23 Aligned_cols=356 Identities=14% Similarity=0.196 Sum_probs=298.0
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhH-HHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYI-NNSL 176 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~l 176 (614)
..+|+.+-..+-.. |++++|+.+|+.|++... -....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+
T Consensus 116 ae~ysn~aN~~ker-g~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKER-GQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHh-chHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 45788888888888 999999999999999762 25678999999999999999999999999874 455443 3445
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHHhhCchh
Q 038206 177 IHFYASCGHLDLANKVFDNMLE--RS-LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-GYTFQSITSACAGLATLS 252 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~~~~~~~ 252 (614)
-...-..|++++|...+.+..+ |. .+.|+.|...+-..|+...|+.-|++.... .|+ ...|..+-..+...+.++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcch
Confidence 5555667999999988877543 43 468999999999999999999999988764 343 446777888888888899
Q ss_pred HHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRD-LTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.|...+...... .| ...++..+...|...|.++-|.+.+++.. +|+ ...|+-|..++-..|+..+|.+.+.
T Consensus 270 ~Avs~Y~rAl~l-----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNL-----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhc-----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 998888887754 44 46677788888999999999999999877 344 5789999999999999999999998
Q ss_pred HHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 329 RLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 329 ~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
+. .. ..|+. ...+.|-..+...|.+++|..+|.... .+.|. ....+.|...|-+.|++++|..-+++. .++
T Consensus 345 ka-L~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 345 KA-LR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HH-HH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 76 33 45654 667889999999999999999999885 45554 567889999999999999999999887 788
Q ss_pred CC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 406 PD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 406 p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+ ...++.+-..| ...|+++.|.+.+.+++..+|. -...++.|..+|-.+|++.+|..-++...+
T Consensus 419 P~fAda~~NmGnt~-ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 419 PTFADALSNMGNTY-KEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred chHHHHHHhcchHH-HHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 87 45889999999 9999999999999999999998 788899999999999999999999988765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-13 Score=149.74 Aligned_cols=441 Identities=10% Similarity=0.028 Sum_probs=288.5
Q ss_pred ChhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHH---
Q 038206 1 MAVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHF--- 77 (614)
Q Consensus 1 li~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~--- 77 (614)
|++.|.+.|++++ |+..+++..+. .|+...|...+...........++..+.+... .+ . .++..+...
T Consensus 84 LA~~yl~~g~~~~---A~~~~~kAv~l--dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~P--~n-~-~~~~~la~~~~~ 154 (987)
T PRK09782 84 LAEAYRHFGHDDR---ARLLLEDQLKR--HPGDARLERSLAAIPVEVKSVTTVEELLAQQK--AC-D-AVPTLRCRSEVG 154 (987)
T ss_pred HHHHHHHCCCHHH---HHHHHHHHHhc--CcccHHHHHHHHHhccChhHHHHHHHHHHhCC--CC-h-hHHHHHHHHhhc
Confidence 3567888888886 45777666543 56666666666656555555666777776653 34 4 566666665
Q ss_pred -----Hhc-CChhHHHHHHhcCCCC--ChhhHHHH-HHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc-
Q 038206 78 -----ASF-ADLDYAFRVFYQIENP--NSFTWNTL-IRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY- 147 (614)
Q Consensus 78 -----~~~-g~~~~A~~~f~~m~~~--~~~~~~~l-i~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~- 147 (614)
|.+ +....|++ .+...| +..+.... ...|.+. +++++|++++.++.+.+. .+..-...+-.++..
T Consensus 155 ~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l-~dw~~Ai~lL~~L~k~~p--l~~~~~~~L~~ay~q~ 229 (987)
T PRK09782 155 QNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYL-KQWSQADTLYNEARQQNT--LSAAERRQWFDVLLAG 229 (987)
T ss_pred cchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHH-hCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHh
Confidence 666 55555555 233334 34444444 7888888 999999999999999872 233345556667766
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHH--HH--------------
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----RSLVSW--NV-------------- 206 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~--~~-------------- 206 (614)
.++ +.+..++.. .++.++.+..++.+.|.+.|+.++|.+++.++.. |+..+| +.
T Consensus 230 l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 230 QLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred hCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 366 667666442 3446888899999999999999999999987721 100000 00
Q ss_pred --------------HHH---------------------------------------------------------------
Q 038206 207 --------------MID--------------------------------------------------------------- 209 (614)
Q Consensus 207 --------------li~--------------------------------------------------------------- 209 (614)
++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 000
Q ss_pred HHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhh--------------------------------------
Q 038206 210 AFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGL-------------------------------------- 248 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~-------------------------------------- 248 (614)
-.++.|+.++|..+|+..... ..++.....-++..+...
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 123445556666666555431 111111111222222222
Q ss_pred -------------------------CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--
Q 038206 249 -------------------------ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-- 301 (614)
Q Consensus 249 -------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-- 301 (614)
+..++|...+...... .|+......+...+...|++++|...|+++..
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~-----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR-----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 2333444444444432 23332222334444578888888888876652
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
++...+..+...+.+.|+.++|...+++. ... .|+. ..+..+.......|++++|...++...+ ..|+...+.
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qA-L~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~ 613 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQA-EQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYV 613 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 44455666677778888888888888877 443 2443 2233333445566999999999988864 456788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
.+..++.+.|+.++|+..+++. ...|+ ...++.+-..+ ...|+.++|+..++++++..|. ++..+..+..+|...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL-~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL-WDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 9999999999999999999887 55665 45556666666 8899999999999999999999 8899999999999999
Q ss_pred ChhhHHHHHHHHHhC
Q 038206 459 RWNDVGLVRKLMTDK 473 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~ 473 (614)
++++|...+++..+.
T Consensus 692 d~~eA~~~l~~Al~l 706 (987)
T PRK09782 692 DMAATQHYARLVIDD 706 (987)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-13 Score=130.18 Aligned_cols=345 Identities=19% Similarity=0.236 Sum_probs=250.6
Q ss_pred HHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 038206 88 RVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV 167 (614)
Q Consensus 88 ~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 167 (614)
-+|+..| ++..+|..||.++++- ...+.|.++|++-.....+ .+..+||.+|.+.+- ..++++..+|....+.
T Consensus 198 L~~E~~P-KT~et~s~mI~Gl~K~-~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 LLFETLP-KTDETVSIMIAGLCKF-SSLERARELYKEHRAAKGK-VYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHhhcC-CCchhHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 4444443 5678999999999999 9999999999999988877 899999999988653 3448999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHH----hhc----CCCChhHHHHHHHHHHhcCChhH-HHHHHHHhhhc-----cCC
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVF----DNM----LERSLVSWNVMIDAFVQFGEFDS-ALKLFRRMQIL-----FEP 233 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f----~~m----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~-----~~p 233 (614)
||..|+|+++++.++.|+++.|.+.+ .+| .+|...+|..+|..+.+.++..+ |..++.++... ++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988766554 455 57889999999999999988754 55666666543 333
Q ss_pred ----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC-CCcc---ccHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 038206 234 ----DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS-LVTD---VLVNNSLIDMYCKCGSLDIARQVFESMPK---- 301 (614)
Q Consensus 234 ----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g-~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~---- 301 (614)
|..-|.+.+..|.+..+.+.|.++++.+....... +.|+ ..-|..+....|....++.-...|+.|..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 45567889999999999999999999887642222 2333 34566788888889999999999998873
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC-C---H----------HHHHHHHHHH-
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG-M---V----------SEGRDYFDVM- 366 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g-~---~----------~~a~~~~~~~- 366 (614)
|+..+-..++.+....|.++-.-++|..| ...|-.-+...-.-++.-.++.. . . +-|..+++..
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~-~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDS-KEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHH-HHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778888888889988888888888 66664444433333333333322 1 1 0111111111
Q ss_pred ---HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 367 ---INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 367 ---~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
.+...........++..-.+.|.|..++|.++|.-+ +..|.....--++.+. .+.++...|..+++.+.
T Consensus 510 ~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a-~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 510 SQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSA-KVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHH-HhcCCHHHHHHHHHHHH
Confidence 000123334556677888889999999999887654 3345444445666666 67778888888888886
Q ss_pred HhcCC
Q 038206 437 ESEGG 441 (614)
Q Consensus 437 ~~~~~ 441 (614)
..+..
T Consensus 589 ~~n~~ 593 (625)
T KOG4422|consen 589 AFNLP 593 (625)
T ss_pred HcCch
Confidence 65544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-13 Score=150.36 Aligned_cols=369 Identities=12% Similarity=0.029 Sum_probs=263.2
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
...+...++ +. |+ + ..|..+...|.+ |++++|...++...+ | +...|..+-.+|... |++++|+.-|...
T Consensus 147 i~~y~~al~--~~-p~-~-~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l-g~~~eA~~~~~~~ 220 (615)
T TIGR00990 147 IKLYSKAIE--CK-PD-P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL-GKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHh--cC-Cc-h-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 444444444 45 56 6 778888888888 999999999988765 3 556788888899999 9999999988877
Q ss_pred HHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-----------------------------CchhHHHHH
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV-----------------------------SDVYINNSL 176 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l 176 (614)
...+.. +......++..... ..+........+.... .+......+
T Consensus 221 ~~~~~~--~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 221 CIIDGF--RNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHhCCC--ccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 655422 22222222222111 1111111111111100 000001111
Q ss_pred HHHH------HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHH
Q 038206 177 IHFY------ASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244 (614)
Q Consensus 177 i~~~------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a 244 (614)
+..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.....+-+..+|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 1111 1236789999999887532 345788888999999999999999999876533335578888888
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAE 321 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~ 321 (614)
+...|+++.+...+..+.+. .+.+..++..+...|...|++++|...|++..+ | +...|..+...+.+.|+.+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKL----NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 89999999999999999875 344577899999999999999999999998763 3 5678888889999999999
Q ss_pred HHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC--h------hHHHHHHHHHHHcCCH
Q 038206 322 AALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV--L------EHYGCLVDLLARAGNI 392 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~------~~~~~li~~~~~~g~~ 392 (614)
+|+..|++. .. ..|+ ...+..+...+...|++++|...|+...+ +.|+ . ..++.....+...|++
T Consensus 451 eA~~~~~~a-l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 451 SSMATFRRC-KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHHHHHH-HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999987 43 2344 46777888889999999999999999865 2232 1 1122223344457999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 393 DEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 393 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
++|.+++++. ...|+ ...+..+...+ ...|++++|.+.|+++.+....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~-~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLL-LQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHhcc
Confidence 9999999885 55564 45688888888 9999999999999999988665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-14 Score=152.01 Aligned_cols=327 Identities=9% Similarity=0.020 Sum_probs=259.2
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 210 (614)
+..-...++..+...|+++.|..++...+.....+.. ....+.......|+++.|...|+++.+ | +...|..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3445666778888999999999999999987655444 444455666679999999999999843 3 45678889999
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
+.+.|++++|+..|++.....+.+...+..+..++...|+.+.|...+..+... . +.+...+..+ ..+...|+++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~---~-P~~~~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE---V-PPRGDMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---C-CCCHHHHHHH-HHHHHcCCHH
Confidence 999999999999999998754555667888889999999999999999988765 2 2223333333 3478899999
Q ss_pred HHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHH----HHH
Q 038206 291 IARQVFESMPKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSE----GRD 361 (614)
Q Consensus 291 ~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~----a~~ 361 (614)
+|...++.+.+. +...+..+...+.+.|+.++|+..+++. ... .|+ ...+..+...+...|++++ |..
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a-l~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA-LAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 999999987542 3344555667889999999999999998 543 344 4566677888899999985 899
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.|+...+ --+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+...+ ...|++++|...++++.+..
T Consensus 272 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l-~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 272 HWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL-RQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC
Confidence 9998875 22336778899999999999999999999887 44564 45666677777 89999999999999999998
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
|. +...+..+..++...|++++|...+++..+.
T Consensus 349 P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred cc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88 5555666788899999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-12 Score=141.45 Aligned_cols=438 Identities=11% Similarity=0.037 Sum_probs=294.9
Q ss_pred CCCCCcchHHHHHHHhhhcCCCCC-hhhHHHHHHh--------ccCcchHHHHHHHHHHhCCCCCCchHHHHHHH-HHHH
Q 038206 9 GPPTPQTHSHSIFNNNRNEGSFNN-HSSLLSSLTE--------CKSMSQLKQIHAQALRTALPQQHKTLLIYSRI-IHFA 78 (614)
Q Consensus 9 g~~~~a~~al~~~~~m~~~g~~p~-~~~~~~~l~~--------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l-i~~~ 78 (614)
+++.+ |..+++++... .|+ ...+..+... +...+....... ....... ++ + .+.... ...|
T Consensus 122 ~~~~k---A~~~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~-~~-~-~vL~L~~~rlY 192 (987)
T PRK09782 122 PVEVK---SVTTVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAAS-PE-G-KTLRTDLLQRA 192 (987)
T ss_pred ccChh---HHHHHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCC-CC-c-HHHHHHHHHHH
Confidence 55555 66999998765 333 2223222222 444454433333 3333333 34 4 444444 8899
Q ss_pred hc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHc-CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 79 SF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACAR-SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 79 ~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~-~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
.. |++++|.+++.++.+ | +..-+..+-.+|.. . ++ +++..+++. ... -|......+...+...|+.++
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l-~~-~~a~al~~~----~lk-~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQ-LD-DRLLALQSQ----GIF-TDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh-CH-HHHHHHhch----hcc-cCHHHHHHHHHHHHHCCCHHH
Confidence 98 999999999999876 3 33335556667777 3 55 777777553 222 467788899999999999999
Q ss_pred HHHHHHHHHHhCCC-Cchh------------------------------HHHHHHHHHHhcCCHHHHHHH----------
Q 038206 154 GKQAHAHIFKRGLV-SDVY------------------------------INNSLIHFYASCGHLDLANKV---------- 192 (614)
Q Consensus 154 a~~~~~~~~~~g~~-~~~~------------------------------~~~~li~~~~~~g~~~~A~~~---------- 192 (614)
|.+++..+...-.. |... ..-.++..+.+.++++.+.++
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 99888775432111 1111 111223444444444433333
Q ss_pred -----------------------------------------------------HhhcCC--C------------------
Q 038206 193 -----------------------------------------------------FDNMLE--R------------------ 199 (614)
Q Consensus 193 -----------------------------------------------------f~~m~~--~------------------ 199 (614)
|+.... +
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 222100 0
Q ss_pred --------------------------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 200 --------------------------------------------------SLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 200 --------------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+...|..+..++.. ++.++|+..|.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 11122333333333 455566665555544
Q ss_pred ccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC---HHH
Q 038206 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD---LTS 306 (614)
Q Consensus 230 ~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~---~~~ 306 (614)
. .|+......+..++...|+.+.|...++.+... +|+...+..+...+.+.|+.++|...|+...+.+ ...
T Consensus 505 ~-~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l 578 (987)
T PRK09782 505 R-QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL 578 (987)
T ss_pred h-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH
Confidence 3 455544444455556899999999999887543 4555556777888999999999999998776432 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLL 386 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (614)
+..+.....+.|++++|+..+++. .. ..|+...+..+..++.+.|+.++|...++...+ --+.+...++.+...+
T Consensus 579 ~~~La~~l~~~Gr~~eAl~~~~~A-L~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 579 YWWLHAQRYIPGQPELALNDLTRS-LN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH-HH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 333333444569999999999987 43 567778888888999999999999999999975 2333677888898999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 387 ARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
...|+.++|++.+++. ...| +...+..+-.++ ...|++++|+..++++++..|. +..+.........+..+++.+.
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-QRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999987 4456 566788888888 9999999999999999999998 7788888888888899999999
Q ss_pred HHHHHHHhCCCc
Q 038206 465 LVRKLMTDKGVT 476 (614)
Q Consensus 465 ~~~~~m~~~g~~ 476 (614)
+-+++-...+..
T Consensus 732 ~~~~r~~~~~~~ 743 (987)
T PRK09782 732 EEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHhhcCcc
Confidence 888776554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-12 Score=136.97 Aligned_cols=392 Identities=10% Similarity=0.030 Sum_probs=254.7
Q ss_pred HHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHH---HHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHcc
Q 038206 73 RIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLI---RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148 (614)
Q Consensus 73 ~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 148 (614)
.++..+.. |+.++|+..+++...|+...+..+. ..+... |++++|+++|+++.+... -|...+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQSSLKKDP--TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhc
Confidence 66666666 7777777777777665444444333 245555 777777777777777662 1334455556666777
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|+++..
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 7777777777777654 34444444444445445555557777777633 3 34456666677777777777776665
Q ss_pred HhhhccCCChhhH------HHHHHHH-----HhhCc---hhHHHHHHHHHHHhccCCCCccccH-HHHH---HHHHHhcC
Q 038206 226 RMQILFEPDGYTF------QSITSAC-----AGLAT---LSLGMWAHAYILRHCDHSLVTDVLV-NNSL---IDMYCKCG 287 (614)
Q Consensus 226 ~m~~~~~pd~~t~------~~ll~a~-----~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~-~~~l---i~~y~~~g 287 (614)
+-..-+.|...-. ...++-- ..... .+.+..-.+.+.... ...++.... ..+. +-++.+.|
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW-GKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc-cCCCccchHHHHHHHHHHHHHHHhh
Confidence 5332222211111 0111000 01111 222333333333321 012222222 2333 44667889
Q ss_pred CHHHHHHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC----CCccHHHHHHHHHHHhccCCHHHH
Q 038206 288 SLDIARQVFESMPKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEES----FSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 288 ~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g----~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
+..++.+.|+.++.+ -..+--++.++|...+++++|+.++++.....+ ..++......|..++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999843 234556788999999999999999998833332 122333357889999999999999
Q ss_pred HHHHHHHHHhcCC----------CCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 360 RDYFDVMINEYNI----------TPV---LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 360 ~~~~~~~~~~~~~----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
..+++.+.+.... .|+ ...+..++..+...|++.+|++.++++ ..-| |...+..+-..+ ...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~-~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY-LARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC
Confidence 9999999752110 122 223455777888999999999999998 2334 777888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+.+|++.++.+....|. +..+....+..+...|+|++|..+.+...+
T Consensus 466 p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 466 PRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999998 888899999999999999999988877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-12 Score=140.24 Aligned_cols=392 Identities=11% Similarity=0.057 Sum_probs=282.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChh-hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcch-HHHH--H
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSF-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHT-FPFA--L 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t-~~~l--l 142 (614)
..|...|..+..|+++.|+..|++..+ |+.. ....++..+... |+.++|+..+++... |+... +..+ .
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~-----p~n~~~~~llalA 109 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQS-----SMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhcc-----CCCCCHHHHHHHH
Confidence 456667766666999999999999876 4431 233788888888 999999999999882 43333 3333 4
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--cCChhHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ--FGEFDSA 220 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A 220 (614)
..+...|+++.|.++++.+++... .++.++..++..|.+.++.++|++.++++...+......+..+|.. .++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 567788999999999999999863 3467777889999999999999999999966544333234445544 5666669
Q ss_pred HHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccH------HHHHHHHH---H--hcCC-
Q 038206 221 LKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLV------NNSLIDMY---C--KCGS- 288 (614)
Q Consensus 221 ~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~li~~y---~--~~g~- 288 (614)
++.++++....+-+...+.....+..+.|....+.++...-... +.+.... ...+|..- . ...+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 99999998875556667788888888888888887655432211 1111100 01111100 0 1112
Q ss_pred --HHHHHHHHhcCCC-----CCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 289 --LDIARQVFESMPK-----RDL-TSW----NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 289 --~~~A~~~~~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
.+.|+.-++.+.. |.. ..| -=.+-++...|+..++++.|+.| +..+.+....+-..+.++|...+.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l-~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM-EAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 2334443443321 321 122 23456788899999999999999 8888765556888899999999999
Q ss_pred HHHHHHHHHHHHhcC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC----------------CCCHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYN----ITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM----------------KPDAVIWRSLLD 416 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~p~~~~~~~ll~ 416 (614)
++|..++..+....+ ..++......|.-+|...+++++|..+++.+.- .||-..+..+..
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 999999999876432 233455567899999999999999999998721 134444444444
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+....|++.+|++.++++....|. |......+.+++...|...+|.+.++.....
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 4338899999999999999999999 9999999999999999999999999776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=117.68 Aligned_cols=355 Identities=16% Similarity=0.185 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH--ccCCcHHHH-HHHHHHHHhCCCCchhHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA--YLFAFSQGK-QAHAHIFKRGLVSDVYINN 174 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~-~~~~~~~~~g~~~~~~~~~ 174 (614)
+++=|.++....+ |....+.-+|+.|.+.|+. .+...-..+++..+ ...++--++ +-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS~--~EvKDs~ilY~~m~~e~~~-vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 116 VETENNLLKMISS--REVKDSCILYERMRSENVD-VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hcchhHHHHHHhh--cccchhHHHHHHHHhcCCC-CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 4456666655544 6778888888888888866 66655555554432 222222221 2233333333 1122222
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhH
Q 038206 175 SLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 175 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
|.|++.+ ++-+...++..+|..||.|.++--..+.|.++|++-... .+.+..+|+.+|.+.+-+ .
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 2344433 333333345567777777777777777777777777666 777777777777654332 2
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH----HHHhcCC----CCCHHHHHHHHHHHHhcCCHHH-HH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR----QVFESMP----KRDLTSWNSIILGFALHGRAEA-AL 324 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~----~~~~~m~----~~~~~~~~~li~~~~~~g~~~~-A~ 324 (614)
++.+...|... .+.||..|+|+++.+.++.|+++.|. +++.+|+ +|...+|..+|.-+++.++..+ |.
T Consensus 257 ~K~Lv~EMisq---km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 GKKLVAEMISQ---KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred cHHHHHHHHHh---hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 35666666666 67777777777777777777666543 3444444 5667777777777777666543 33
Q ss_pred HHHHHHh---hhcCC---Cc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC---CCCC---hhHHHHHHHHHHHcCC
Q 038206 325 KYFDRLV---VEESF---SP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYN---ITPV---LEHYGCLVDLLARAGN 391 (614)
Q Consensus 325 ~l~~~m~---~~~g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~---~~p~---~~~~~~li~~~~~~g~ 391 (614)
.++.+++ .-... .| |...|...+..|.+..+.+.|.++...+....+ +.|+ ..-|..+.++.+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333331 11112 22 235566667777777777777777665533111 2222 1234556666666666
Q ss_pred HHHHHHHHHhC-C--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-------------------CCC-------
Q 038206 392 IDEALHLVSNM-P--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-------------------GGI------- 442 (614)
Q Consensus 392 ~~~A~~~~~~m-~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~------- 442 (614)
++.-+..++.| | .-|+..+-..++.|. ...+.++..-+++..++..| +.|
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~-~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRAL-DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHH-hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 66667777666 2 225555555566655 55555555444444443322 122
Q ss_pred ----------------------------CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 443 ----------------------------CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 443 ----------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
.+...+...-.+.+.|+.++|.+++..+.+++-
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 233344556667899999999999998865543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-11 Score=128.43 Aligned_cols=399 Identities=12% Similarity=0.101 Sum_probs=259.5
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCC------hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPN------SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.| | .+.|.|.+.|-- |+++.+..+...+..-+ ..+|-.+-++|-.. |++++|...|.+..+.. ||.+
T Consensus 268 ~n-P-~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~-Gd~ekA~~yY~~s~k~~---~d~~ 341 (1018)
T KOG2002|consen 268 EN-P-VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ-GDFEKAFKYYMESLKAD---NDNF 341 (1018)
T ss_pred CC-c-HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHccC---CCCc
Confidence 56 7 889999997777 99999888877765422 34566788888888 99999999998888776 5654
Q ss_pred --hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----CHHHHHHHHhhcCCC---ChhHHHHH
Q 038206 137 --TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG----HLDLANKVFDNMLER---SLVSWNVM 207 (614)
Q Consensus 137 --t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~f~~m~~~---~~~~~~~l 207 (614)
.+..+.+.+...|+++.+...|+.+.+.. +.+..+...|-..|+..+ ..+.|..++....++ |...|-.+
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 44567788899999999999999998864 445666667777777664 456666666555333 33344444
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-----cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc-------H
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL-----FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL-------V 275 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~-----~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~ 275 (614)
...|-+..-+ .++..|...... ..+.....+.+.......|.++.|...+.........-..+|.. -
T Consensus 421 aql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 4433332222 223333333211 22333344444444444444444444444433321000111110 0
Q ss_pred --------------------------HHHHHHHHHhc-------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 038206 276 --------------------------NNSLIDMYCKC-------GSLDIARQVFESMP---KRDLTSWNSIILGFALHGR 319 (614)
Q Consensus 276 --------------------------~~~li~~y~~~-------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~ 319 (614)
+-..|++|.+. +...+|...++... ..|+..|+.+-..|.....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 11233444443 34455666665544 3456667666667777777
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNH------------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
+..|.+-|..........+|.++..+|-+.|.. .+..+.|+++|..+.+ .-+.|...-|.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 777777665552333344677777777665432 2346778888888765 44457888888999999
Q ss_pred HcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-CCCCchhHHHHHHHHhhcCChhhHH
Q 038206 388 RAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
..|++.+|..+|.+.. ..-+..+|-.+-..| ...|++..|.++|+...+.- +.-++.....|.+++.++|.+.+|.
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~-~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCY-VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999873 123456788888888 99999999999999988764 3435677889999999999999999
Q ss_pred HHHHHHHhC
Q 038206 465 LVRKLMTDK 473 (614)
Q Consensus 465 ~~~~~m~~~ 473 (614)
+........
T Consensus 737 ~~ll~a~~~ 745 (1018)
T KOG2002|consen 737 EALLKARHL 745 (1018)
T ss_pred HHHHHHHHh
Confidence 998776554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-11 Score=117.30 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=156.0
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
.|+++.+...+...... .-......||. .-.+-+.|++++|++.|-++. ..++.....+...|-...+..+|+
T Consensus 503 ngd~dka~~~ykeal~n---dasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNN---DASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred cCcHHHHHHHHHHHHcC---chHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 45666666666666654 22222223332 224566788888888887654 446666667777888888888999
Q ss_pred HHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038206 325 KYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM- 402 (614)
Q Consensus 325 ~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 402 (614)
+++.+. ..+.| |.....-|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++|+.+|++.
T Consensus 579 e~~~q~---~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 579 ELLMQA---NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHh---cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 988644 44445 456777788889999999999888765422 45558889999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 403 PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 403 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
-++|+..-|..|+..|.++.|++.+|.++++......|. |......|.+.+...|.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 578999999999999989999999999999999999999 99999999999887774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-09 Score=113.68 Aligned_cols=385 Identities=12% Similarity=0.068 Sum_probs=262.7
Q ss_pred ChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHccCCcHHHHHH
Q 038206 82 DLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 82 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
.+..+..++...-. .|++..|.|-+-|... |+++.+..+...+....... .-...|--+.+++-..|+++.|.++
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFK-KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 34455555544322 5677777777777777 99999999988887654110 1123577788889999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcC----ChhHHHHHHHHhhhc
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFG----EFDSALKLFRRMQIL 230 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~ 230 (614)
|.+..+..-..-+..+--|..+|.+.|+++.+...|+.+.+ | +..+--.|...|+..+ ..+.|..++.+....
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 98887754222233455688899999999999999998843 3 3455566666676664 346666666666554
Q ss_pred cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH-hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C
Q 038206 231 FEPDGYTFQSITSACAGLATLSLGMWAHAYILR-HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-------R 302 (614)
Q Consensus 231 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~ 302 (614)
.+.|...|..+-..+....-+.. ..++..+.. ....+-.+.+.+.|.+...+...|+++.|...|+.... +
T Consensus 410 ~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 55566677666666554443333 555555442 22225567788999999999999999999999986642 2
Q ss_pred CH------H-HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 038206 303 DL------T-SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 303 ~~------~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 374 (614)
|. . -|| +...+-..++.+.|.+.|..+ .. -.|.-+ .|.-+.......+...+|...+..... ....
T Consensus 489 de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~I-lk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~ 562 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSI-LK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSS 562 (1018)
T ss_pred cccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHH-HH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccC
Confidence 22 1 233 344455567888999999888 33 245443 333333222345778888888888876 4445
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH-----------hcCchHHHHHHHHHHHHhc
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPDAVIWRSLLDACCK-----------KHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~-----------~~~~~~~a~~~~~~~~~~~ 439 (614)
++..++.+.+.+.+...+..|.+-|..+ ...+|..+.-+|-+.|.. ..+..+.|+++|.+++...
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 5556666777888877777777744443 334677777777665521 2245778899999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
|. |...-+.+.-+++..|++.+|..+|...++...
T Consensus 643 pk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 643 PK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 88 877778888889999999999999999888755
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-13 Score=128.85 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=108.5
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
++..+..++.. ...+++++|.+++...- .++...+..++..+.+.++++++.+++++.......+++...|..+...
T Consensus 77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 44556666666 68889999988887664 3466778888888999999999999999873223345566777778888
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhcCchH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMP--MKPDAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~ 426 (614)
+.+.|+.++|...++...+. .| +....+.++..+...|+.+++.++++... ...|...|..+..++ ...|+.+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~-~~lg~~~ 231 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY-LQLGRYE 231 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH-HHHT-HH
T ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh-ccccccc
Confidence 89999999999999999763 45 57788889999999999999887776651 124556788888888 8999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.|...+++..+..|. |+.....+.+++...|+.++|.+++++..
T Consensus 232 ~Al~~~~~~~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 232 EALEYLEKALKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHSTT--HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 999999999999999 99999999999999999999999987653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-10 Score=116.89 Aligned_cols=283 Identities=12% Similarity=0.045 Sum_probs=186.2
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCCHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY--INNSLIHFYASCGHLDLA 189 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A 189 (614)
|++++|.+......+.. +++.. |.....+....|+.+.+.+.+.++.+. .|+.. ........+...|+.+.|
T Consensus 98 Gd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 78888876666554432 12222 222233446778888888888887764 34432 222345677788888888
Q ss_pred HHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc
Q 038206 190 NKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266 (614)
Q Consensus 190 ~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 266 (614)
...++...+ | +......+...|.+.|++++|.+++..+.+....+......+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~------------------------ 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHH------------------------
Confidence 888887743 2 4566777888888888888888888888765111111111000
Q ss_pred CCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 267 HSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 267 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
..+|..++....+..+.+...++++.++ ..++.....+...+...|+.++|.+++++. .+ ..||...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~-l~--~~~~~~l- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG-LK--RQYDERL- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCHHH-
Confidence 0122223333333445566666676665 246777788888888888888888888876 44 3444421
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhc
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKH 422 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~ 422 (614)
.++.+....++.+++.+..+...++ .+-|.....++...+.+.|++++|.+.|+.. ...|+..++..|...+ ...
T Consensus 299 -~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~-~~~ 374 (398)
T PRK10747 299 -VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL-DRL 374 (398)
T ss_pred -HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHc
Confidence 1333444568888888888888653 3345666778888888889999999888887 6678888888888888 888
Q ss_pred CchHHHHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIES 438 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~ 438 (614)
|+.++|.+++++.+..
T Consensus 375 g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 HKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 8889998888887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-09 Score=99.19 Aligned_cols=413 Identities=11% Similarity=0.103 Sum_probs=302.9
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
+++..|+.+|++... ++...|-.-+..=.++ .....|..++++....-.. .|..-| -.+-.=-..|++..|+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emkn-k~vNhARNv~dRAvt~lPR-VdqlWy-KY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKN-KQVNHARNVWDRAVTILPR-VDQLWY-KYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhh-hhHhHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHhcccHHHHHH
Confidence 788899999998765 6777788788888888 8999999999998876522 343322 233333456999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhcc---C
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILF---E 232 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~ 232 (614)
|+.-.. .+|+...|++.|+.=.+-..++.|..+++.. ..|++.+|--...-=.++|+...|..+|......+ .
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 998765 6899999999999999999999999999986 67899999999988889999999999999887652 2
Q ss_pred CChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc--ccHHHHHHHHHHhcCCHHHHHHHH---hcCC-----C-
Q 038206 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVF---ESMP-----K- 301 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~---~~m~-----~- 301 (614)
-+...|++...-=.+....+.+.-++...+.. ++.+ ...|..+...=-+-|+....+++. .++. +
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 22333444444445667788899999999885 4433 456666666666667755444332 2222 2
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-------HHHHHHHHHH---hccCCHHHHHHHHHHHHHh
Q 038206 302 --RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-------ITFVGVLSAC---NHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 302 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~ 369 (614)
-|-.+|--.+..-...|+.+...++|++. -.+++|-. ..|.-+=.+| ....+++.+.++++..++
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErA--Ianvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERA--IANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHH--HccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 26678887777777889999999999987 34566633 2222222222 357889999999999875
Q ss_pred cCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 370 YNITPVLEHYGCLVDLLA----RAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
-++-...|+.-+--+|+ ++.++..|.+++... +.-|-..++...|..- .+.+++++...++++.++-+|. |.
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelE-lqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELE-LQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHH-HHHhhHHHHHHHHHHHHhcChH-hh
Confidence 44445666666655554 678999999998776 7789999999999887 8889999999999999999999 89
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHH
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDE 515 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (614)
.+|.-....-...|+++.|..+|+...+....--|..-| ++.+ .=....+..+.+-.+++.+++
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw---kaYI----dFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW---KAYI----DFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH---HHhh----hhhhhcchHHHHHHHHHHHHH
Confidence 999988888889999999999999887765433333222 2221 111124555566665555555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-09 Score=111.87 Aligned_cols=314 Identities=14% Similarity=0.118 Sum_probs=187.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
|++++|..++.++++.. +.+...|-.|...|-..|+.+++...+--. ...|..-|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 223444555555555555555555444322 22344455555555555555555555555
Q ss_pred HhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc----HHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 226 RMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL----VNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 226 ~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
+..+.-+++...+---...|-+.|+...|..-+.++.+. .-+.|.. ..-..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 554443444333333444445555555555555555543 1111111 111234444555555666655554432
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc---------------------------CCCccHHHHHHHHHH
Q 038206 302 -----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEE---------------------------SFSPNSITFVGVLSA 349 (614)
Q Consensus 302 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---------------------------g~~p~~~t~~~ll~a 349 (614)
-+...++.++..|.+...++.|......+ ... ++.++...+ -+.-+
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 12344556666666666666666666555 331 122222221 12222
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHhcCc
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNMPMK---PDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p~~~~~~~ll~~~~~~~~~ 424 (614)
..+....+....+...... ..+.| +...|.-+.++|...|++.+|+++|..+.-. -+...|.-+-..+ ...|.
T Consensus 387 L~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~-~~l~e 464 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY-MELGE 464 (895)
T ss_pred hhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH-HHHhh
Confidence 3344444444444444433 35334 5778999999999999999999999988322 3577899888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.++|.+.|+.++...|. +...-..|...|.+.|+.++|.+++..|.
T Consensus 465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999 89999999999999999999999998876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-10 Score=115.81 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=182.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
|+++.|.+.+.+..+.. |+... +-....+....|+.+.+.+.+....+....+...+.-.....+...|+.+.|..
T Consensus 98 g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888887776654 54332 333345566778888888888887765433333344445777778888888888
Q ss_pred HHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 192 VFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 192 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
.++.+.+ | +...+..+...+.+.|++++|.+++....+...++...+..+-.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~------------------------- 229 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ------------------------- 229 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-------------------------
Confidence 8888743 3 55577788888888888888888888887651122221111000
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH--
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF-- 343 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~-- 343 (614)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++. .+ ..||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~-l~--~~pd~~~~~~ 301 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG-LK--KLGDDRAISL 301 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH-Hh--hCCCcccchh
Confidence 0111111111222234455555555553 36777777778888888888888888876 33 23444321
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Q 038206 344 -VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN---MPMKPDAVIWRSLLDACC 419 (614)
Q Consensus 344 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~~~~ 419 (614)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll- 380 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF- 380 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH-
Confidence 1111222345777778888877765433333225566788888888888888888883 25578888888787777
Q ss_pred HhcCchHHHHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~ 438 (614)
.+.|+.++|.+++++....
T Consensus 381 ~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 381 DQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-09 Score=107.88 Aligned_cols=274 Identities=11% Similarity=0.058 Sum_probs=181.8
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHH--HHHHHHHhhCchhHHHHH
Q 038206 183 CGHLDLANKVFDNMLER--S-LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQ--SITSACAGLATLSLGMWA 257 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~--~ll~a~~~~~~~~~~~~~ 257 (614)
.|+++.|.+.+....+. + ...|-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555544332 1 122222223335556666666666665442 33332222 223344555666666666
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CH--------HHHHHHHHHHHhcCCHHHHHHH
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DL--------TSWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~--------~~~~~li~~~~~~g~~~~A~~l 326 (614)
++.+.+. -+.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++
T Consensus 176 l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 176 VDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666553 3445677888888888889999998888877632 11 2444445545555667777777
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK 405 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 405 (614)
++.. .. ..+.+......+..++...|+.++|..+++...+ .+|+... .++.+....++.+++.+..+.. +..
T Consensus 252 w~~l-p~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 252 WKNQ-SR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHhC-CH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 7776 22 2344667778888999999999999999998865 3455532 2333334569999999999877 445
Q ss_pred CCHHH-HHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 406 PDAVI-WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 406 p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|+... ...+-..| ...+++++|.+.|+.+.+..|+ ..+|..|..++.+.|+.++|.+.+++-.
T Consensus 325 P~~~~l~l~lgrl~-~~~~~~~~A~~~le~al~~~P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLL-MKHGEWQEASLAFRAALKQRPD--AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76554 55555666 9999999999999999998766 6778899999999999999999998653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-09 Score=107.83 Aligned_cols=280 Identities=10% Similarity=0.025 Sum_probs=165.6
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh--hHHHHHHHHHHhcCChhHHH
Q 038206 147 YLFAFSQGKQAHAHIFKRGLVSDVY-INNSLIHFYASCGHLDLANKVFDNMLE--RSL--VSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 221 (614)
..|+++.|++.+....+.. |++. .+-....++.+.|+.+.|.+.|.+..+ |+. ...-+....+.+.|++++|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3466666666665554432 2222 222334455556666666666665421 221 22223355555566666666
Q ss_pred HHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 222 KLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 222 ~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
..++.+.+. -+-+..+...+...|...|++++|.+.+..+.+
T Consensus 174 ~~l~~l~~~--------------------------------------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 174 HGVDKLLEM--------------------------------------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665543 223444556666666666666666666665552
Q ss_pred C---CHHHHH----HHHHHHHhcCCHHHHHHHHHHHhhhcC---CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 302 R---DLTSWN----SIILGFALHGRAEAALKYFDRLVVEES---FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 302 ~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
. +...+. ....++...+..+++.+.+..+ .... .+.+...+..+...+...|+.++|.++++...++
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~-~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-- 292 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW-WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-- 292 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--
Confidence 2 222221 1111112223333333444444 2211 1236677788888999999999999999999764
Q ss_pred CCCChhH-HHHHHHHH--HHcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 372 ITPVLEH-YGCLVDLL--ARAGNIDEALHLVSNM-PMKPDA---VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 372 ~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.|+... ...++..+ ...++.+.+.+.++.. ...|+. ....++-..+ .+.|++++|.+.|+........|+.
T Consensus 293 -~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 293 -LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL-MKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred -CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-HHcccHHHHHHHHHHhHHhhcCCCH
Confidence 233221 11123333 3357788888888765 334544 4455666677 8999999999999965554445567
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
..+..+...+.+.|+.++|.+++++-.
T Consensus 371 ~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 371 NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778899999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.2e-08 Score=96.14 Aligned_cols=457 Identities=9% Similarity=0.034 Sum_probs=329.8
Q ss_pred hhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHH--HHH-hccCcchHHHHH----HHHHHhCCCCCCchHHHHHHHHH
Q 038206 4 AIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLS--SLT-ECKSMSQLKQIH----AQALRTALPQQHKTLLIYSRIIH 76 (614)
Q Consensus 4 ~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~--~l~-~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~li~ 76 (614)
||++-.-++. |-.+++..++. ++-+...+.+ .|. +-+....+..|. ..+...|.. -+ . .-|-.=..
T Consensus 415 AlarLetYen---AkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~-i~-r-dqWl~eAe 487 (913)
T KOG0495|consen 415 ALARLETYEN---AKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE-IN-R-DQWLKEAE 487 (913)
T ss_pred HHHHHHHHHH---HHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee-ec-H-HHHHHHHH
Confidence 5555566665 44677776654 4444444443 222 222222222222 223344554 44 3 33433334
Q ss_pred HHhc-CChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC
Q 038206 77 FASF-ADLDYAFRVFYQIEN------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
.+-. |..--+..+...... .--.+|+.--..|.+. +.++-|..+|...++... -+...|......=-..|
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~-~~~~carAVya~alqvfp--~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR-PAIECARAVYAHALQVFP--CKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc-chHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHhcC
Confidence 4444 555555544443321 2345788888888888 888889999988887651 24556777666666778
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRR 226 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (614)
..+.-..+++.++..- +.....|-....-+...||+..|+.++++..+ | +...|-+-+..-..+..+++|..+|.+
T Consensus 565 t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8888888998888764 34556677777778888999999998887733 2 556788888888999999999999988
Q ss_pred hhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C
Q 038206 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-D 303 (614)
Q Consensus 227 m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~ 303 (614)
.... .|+...|.--++.---++..+++.++.+..++. ++.-...|-.+...+-..++++.|...|..-.+ | .
T Consensus 644 ar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 644 ARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred Hhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 8764 666666665555556678889999999888885 555567888888899999999999998876553 3 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
+..|-.+..-=-+.|..-+|..+|++- +.. -+-|...|...|..-.+.|+.++|..+.....+ ..+.+...|..-|
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildra-rlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI 794 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRA-RLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAI 794 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHH-Hhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHH
Confidence 567888877777888999999999987 433 344668889999999999999999999999887 5667788888889
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
.+..+.++-....+.+++-. -|..+..++-..+ ....+++.|.+.|.+....+|+ +..+|.-+...+.+.|.-++-
T Consensus 795 ~le~~~~rkTks~DALkkce--~dphVllaia~lf-w~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF-WSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HhccCcccchHHHHHHHhcc--CCchhHHHHHHHH-HHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHH
Confidence 88888888777777776654 4555556666666 7778899999999999999999 999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCccEEEE
Q 038206 464 GLVRKLMTDKGVTKEPGCSSIEI 486 (614)
Q Consensus 464 ~~~~~~m~~~g~~~~~~~~~~~~ 486 (614)
.+++++... ..|..|..|..+
T Consensus 871 kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 871 KEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHhc--cCCCCCcHHHHH
Confidence 999988765 345556666433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-10 Score=113.59 Aligned_cols=273 Identities=13% Similarity=0.089 Sum_probs=204.9
Q ss_pred CHHHHHHHHhhcCCC--Ch-hHHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHH
Q 038206 185 HLDLANKVFDNMLER--SL-VSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
+..+|...|...+.. |+ .....+..+|...+++++|.++|+..++. ..-+...|+++|--.-+ .++...-..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--EVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--hHHHHHHHH
Confidence 367888888886442 33 34455778899999999999999999876 44466777777753321 111111111
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
+ +.+ --+..+.+|.++.++|.-.++.+.|.+.|++..+- ...+|+.+-.-+.....+|+|...|+.. .+
T Consensus 412 ~-Li~----~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A---l~ 483 (638)
T KOG1126|consen 412 D-LID----TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA---LG 483 (638)
T ss_pred H-HHh----hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh---hc
Confidence 1 222 23445789999999999999999999999988743 5678888877888899999999999865 33
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIW 411 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 411 (614)
+.|.. ..|-.+-..|.+.++++.|.-.|+... .+.| +.+....+...+-+.|+.++|++++++. ...| |...-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 44443 344456667899999999999999885 5666 5667777888999999999999999987 3333 33333
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 412 RSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 412 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
---...+ ...++.++|++.++++++.-|+ +...|..+...|-+.|+.+.|..-|.-+.+
T Consensus 561 ~~~~~il-~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 561 YHRASIL-FSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHH-HhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 3333344 5568999999999999999999 999999999999999999999988876554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-12 Score=121.93 Aligned_cols=81 Identities=15% Similarity=0.205 Sum_probs=8.8
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHH
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKL 223 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~ 223 (614)
...++.+.|.+.++.+.+.+.. ++..+..++.. ...++.++|.++++..-+ ++...+..++..+.+.++++++.++
T Consensus 55 ~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 55 WSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHH
Confidence 3444455555555554443321 33334444444 344455555444443311 2333444444444455555555555
Q ss_pred HHHhh
Q 038206 224 FRRMQ 228 (614)
Q Consensus 224 ~~~m~ 228 (614)
++...
T Consensus 133 l~~~~ 137 (280)
T PF13429_consen 133 LEKLE 137 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-07 Score=95.73 Aligned_cols=373 Identities=10% Similarity=0.016 Sum_probs=286.0
Q ss_pred ChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 038206 82 DLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158 (614)
Q Consensus 82 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (614)
+.++|+-++.+..+ | +.. |.-+|++- ..++.|..+++..++.- + .+...|.+....=-..|+.+...++.
T Consensus 391 ~~~darilL~rAveccp~s~d----LwlAlarL-etYenAkkvLNkaRe~i-p-td~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD----LWLALARL-ETYENAKKVLNKAREII-P-TDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH----HHHHHHHH-HHHHHHHHHHHHHHhhC-C-CChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 44556666655444 2 222 33355565 67778888888777653 3 46667777666666777777777776
Q ss_pred HH----HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C-ChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 159 AH----IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 159 ~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+. +...|+..+..-|-.=...+-+.|.+-.+..+...... . --.||+.-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 54 34467777777777777777777777777777666521 1 24589999999999999999999999888
Q ss_pred hccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHH
Q 038206 229 ILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLT 305 (614)
Q Consensus 229 ~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~ 305 (614)
+-.+-+...|......--..|..+....+++.+... .+-....|-....-+-+.|++..|..++...-+ .+..
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 766777777877777777888999999999998875 445566777777888889999999999887653 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.|-+-+.--..+.+++.|..+|.+. .. ..|+...|.--+..---.++.++|.+++++..+ .++--...|-.+...
T Consensus 620 iwlaavKle~en~e~eraR~llaka-r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKA-RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHH-hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHH
Confidence 8888888889999999999999976 43 667777776666666667999999999999987 344446778888999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 386 LARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
+-+.++++.|.+.|..- ..-|+ ...|-.|...- .+.|++-+|..++++..-.+|+ +...|...+++-.+.|..+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 99999999999988765 44465 55777776665 8888999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHh
Q 038206 464 GLVRKLMTD 472 (614)
Q Consensus 464 ~~~~~~m~~ 472 (614)
..+..+..+
T Consensus 773 ~~lmakALQ 781 (913)
T KOG0495|consen 773 ELLMAKALQ 781 (913)
T ss_pred HHHHHHHHH
Confidence 988766544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.9e-12 Score=85.63 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~ 352 (614)
||+++||++|.+|++.|++++|.++|++| .+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999 899999999999999999875
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-08 Score=102.88 Aligned_cols=315 Identities=14% Similarity=0.110 Sum_probs=167.7
Q ss_pred cCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 038206 80 FADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 80 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
+|++++|.+++.++.. .+...|.+|-..|-+. |+.++++..+--.-... + -|...|..+-....+.|.+++|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr-Gd~eK~l~~~llAAHL~-p-~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR-GDIEKALNFWLLAAHLN-P-KDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc-ccHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHhcccHHHHHH
Confidence 3777777777766654 3455677777677666 77777666554333332 1 345566666666677777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----h----HHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL----V----SWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|..+++.. +++....---..+|-+.|+...|..-|.++.+.+. . .--.++..|...++-+.|++.+....
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777655 33333333345566667777777666666533221 1 11123344555555566666665554
Q ss_pred hc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh------------------------ccCCCCccccH-HHHHHH
Q 038206 229 IL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH------------------------CDHSLVTDVLV-NNSLID 281 (614)
Q Consensus 229 ~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~------------------------~~~g~~~~~~~-~~~li~ 281 (614)
.. -..+..+++.++..+......+.+.......... ..++++++..+ ...+--
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 42 2233333444444444444444444433333220 01123333333 111111
Q ss_pred HHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 282 MYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
...+.+...+++.-|-... .-++..|.-+..+|.+.|++.+|+.+|..+ ......-+...|..+..+|...|..+
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchhhhHHHHHHHHHHhhHH
Confidence 2223334444433332211 123445666666777777777777777766 44333334556666666666677777
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
+|.+.|+.... ..| +...--.|...|-+.|+.++|.+.+..+
T Consensus 467 ~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 467 EAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 77777776654 223 3344445666666777777777776665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=118.49 Aligned_cols=262 Identities=13% Similarity=0.154 Sum_probs=190.1
Q ss_pred HHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 223 LFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 223 ~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
++-.|+.. +.||.+||.++|.-|+..|+.+.|- ++..|.-. .++.+..+++.++.+....++.+.+. +
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k---sLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK---SLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc---cccccchhHHHHHhcccccccccCCC-------C
Confidence 45556666 8888888888888888888888888 88877776 78888899999999999999887775 7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
|...+|+.|..+|.++||... |+.. +. -...+...++..|....-..++..+.-..+.-||...
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~----fe~v-eq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL----FEVV-EQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH----HHHH-HH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 888999999999999999866 4443 22 2233555666777766666666654333355566544
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChh
Q 038206 382 LVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWN 461 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (614)
.+....-.|.++.++++...+|...-..+.-.++.-+......++.-..+.+...+ .|++.+|..++..-..+|+.+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 56667778889999999998874321112222366552333445544444444444 557999999999999999999
Q ss_pred hHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhhCCccCCCCcc
Q 038206 462 DVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKSRGYTPDYSQA 529 (614)
Q Consensus 462 ~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~ 529 (614)
.|..++.+|+++|+...+...|.++-+ .+....++.+.+-|++.|+-|+..+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---------------~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---------------INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---------------CccchHHHHHHHHHHHhcCCCCcchh
Confidence 999999999999999999988975543 12223345577889999999997663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-07 Score=88.08 Aligned_cols=355 Identities=12% Similarity=0.136 Sum_probs=216.5
Q ss_pred chHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHH
Q 038206 47 SQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQ 123 (614)
Q Consensus 47 ~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~ 123 (614)
..++.++++.+..-.. .| .+|-.-+.|=-. |++..|+++|++... |+...|++.|.-=.+. +..+.|..+|+
T Consensus 124 NhARNv~dRAvt~lPR-Vd---qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy-keieraR~IYe 198 (677)
T KOG1915|consen 124 NHARNVWDRAVTILPR-VD---QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY-KEIERARSIYE 198 (677)
T ss_pred hHHHHHHHHHHHhcch-HH---HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 3447777777765433 34 556566655555 999999999988654 9999999999998888 99999999999
Q ss_pred HHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----C
Q 038206 124 RMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-GL-VSDVYINNSLIHFYASCGHLDLANKVFDNM----L 197 (614)
Q Consensus 124 ~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~ 197 (614)
...-.. |+..+|..-.+-=.+.|....++++++.+++. |- ..+...+.+....=.++..++.|.-+|.-. +
T Consensus 199 rfV~~H---P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 199 RFVLVH---PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHheec---ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998765 89999988888878889999999999988763 21 112234444444445566677777666322 2
Q ss_pred CC-------------------------------------------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC
Q 038206 198 ER-------------------------------------------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234 (614)
Q Consensus 198 ~~-------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd 234 (614)
+. |-.+|-..+..--..|+.+...++|++...+++|-
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~ 355 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA 355 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch
Confidence 11 23344445555555566666666666666554442
Q ss_pred h-------hhHHHHHHHH---HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHH----hcCCHHHHHHHHhcCC
Q 038206 235 G-------YTFQSITSAC---AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC----KCGSLDIARQVFESMP 300 (614)
Q Consensus 235 ~-------~t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~m~ 300 (614)
. ..|.-+=-+| ....+.+..+++++..++. ++...+|+.-+=-+|+ ++.++..|.+++-...
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l----IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL----IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 1 1111111111 2445666666666666653 4444555554444443 4566666666665543
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 038206 301 --KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378 (614)
Q Consensus 301 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 378 (614)
-|-..++..-|..=.+.+++|.+..++++. .+-+ +-|..++......-...|+.+.|..+|+..+....+..-...
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkf-le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKF-LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 344555555555555666666666666665 3321 223355555555555666667777777666554333333445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLL 415 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 415 (614)
|-+.|+.=..+|.++.|..+++++ ...+...+|-++.
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 556666666666677776666665 2234444555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-08 Score=93.43 Aligned_cols=282 Identities=15% Similarity=0.125 Sum_probs=178.7
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcC
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFG 215 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g 215 (614)
..++......+++.+-.+.....|++.+...-+-...+.-...|++.|+.+|+++.+. |..+|..++- +++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3455556677777777777888887777766666666666778888888888888554 4456655543 3322
Q ss_pred ChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHH
Q 038206 216 EFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (614)
+ ..+..+.+-... -+--+.|...+.+-++-.++.+.|...|+..++. -+.....|+.+.+-|....+...|.+
T Consensus 312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHH
Confidence 2 222333322222 2333456667777777777777777777777764 22335677777777777777777777
Q ss_pred HHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 038206 295 VFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370 (614)
Q Consensus 295 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 370 (614)
-++... .+|-..|-.|-++|...+...=|+-.|++. .. .+| |...+.+|-.+|.+.+++++|+.-|.....
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA-~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-- 460 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA-LE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-- 460 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH-Hh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 777554 456677777778887777777777777765 22 444 446777777777777888888777777764
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------P-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
.-..+...+..|.+.|-+.++.++|...|++- + +.|...--...+.-+..+.+++++|........
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 22335566777777777777777777766543 1 223232222333333356666666655544443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-08 Score=97.08 Aligned_cols=350 Identities=13% Similarity=0.094 Sum_probs=231.1
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 038206 103 TLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD-VYINNSLIHFY 180 (614)
Q Consensus 103 ~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 180 (614)
..-+-|.++ |.+++|+..|.+.+... || +..|...-.+|...|+++.+.+--...++. .|+ +..+..-..++
T Consensus 120 ~~GN~~f~~-kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRN-KKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred hhhhhhhhc-ccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 344556777 88999999999988876 77 666777777778888888887766665543 333 22344444555
Q ss_pred HhcCCHHHHHH----------------------HHhh---------cCC-C-ChhHHHHHHHHHHh--------------
Q 038206 181 ASCGHLDLANK----------------------VFDN---------MLE-R-SLVSWNVMIDAFVQ-------------- 213 (614)
Q Consensus 181 ~~~g~~~~A~~----------------------~f~~---------m~~-~-~~~~~~~li~~~~~-------------- 213 (614)
-..|++++|+. +++. +.+ + -+..-++.|..|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55566655442 2111 110 0 01111111111111
Q ss_pred ---------------cC---ChhHHHHHHHHhhhc--cCCChh---------hHHHHHHH--HHhhCchhHHHHHHHHHH
Q 038206 214 ---------------FG---EFDSALKLFRRMQIL--FEPDGY---------TFQSITSA--CAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 214 ---------------~g---~~~~A~~~~~~m~~~--~~pd~~---------t~~~ll~a--~~~~~~~~~~~~~~~~~~ 262 (614)
.+ .+.+|...+.+-... ..++.. .-..++.+ ..-.|+.-.+.+-+..++
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 11 122222222221111 222222 11111111 233567777778888888
Q ss_pred HhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN 339 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~ 339 (614)
+. .+.+...|--+..+|....+.++-.+.|++.. ..|..+|..-...+.-.+++++|..=|++. .. +.|+
T Consensus 354 ~l----~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Ka-i~--L~pe 426 (606)
T KOG0547|consen 354 KL----DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKA-IS--LDPE 426 (606)
T ss_pred hc----CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH-hh--cChh
Confidence 75 22233347777788999999999999998776 235666766666666778899999999876 33 5665
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------H
Q 038206 340 S-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD---------A 408 (614)
Q Consensus 340 ~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~ 408 (614)
. ..|.-+-.+..+.+.++++...|++.++ .++..+.+|+.....+...++++.|.+.|+.. ..+|+ .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 4 6676676677789999999999999976 66777889999999999999999999999875 33333 2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.+-.+++-. .-.+++.+|.++++++.+.+|. ....|..|..+-...|+.++|.++|++-
T Consensus 505 lV~Ka~l~~--qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 505 LVHKALLVL--QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhhHhhh--chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233333332 3348999999999999999999 8899999999999999999999999874
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-09 Score=108.85 Aligned_cols=275 Identities=11% Similarity=0.069 Sum_probs=175.3
Q ss_pred cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHH
Q 038206 151 FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLF 224 (614)
Q Consensus 151 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 224 (614)
..+|...|..+... ...+..+..-+-.+|...++.++|.++|+.+.+. +...|.+.+.-+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 34455555552222 2223344455555555555555555555555221 34455554443321 1222222
Q ss_pred HHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 038206 225 RRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPKR 302 (614)
Q Consensus 225 ~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~ 302 (614)
.+-.-. .+-.+.||.++-+.++-.++.+.|.+.|+..++ +.| ..++|+.+..-+....++|.|...|+.....
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ-----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc-----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222212 233345555555555555666666665555554 344 5677888888888888899999999988766
Q ss_pred CHHHHH---HHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-Chh
Q 038206 303 DLTSWN---SIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLE 377 (614)
Q Consensus 303 ~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 377 (614)
|+..|| -|...|.+.++.+.|+-.|++. . .+.|.. +....+...+-+.|+.++|+++++.... +.| |+-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-V--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPL 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhh-h--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCch
Confidence 665544 4567788999999999999865 3 356654 5555566667788999999999998863 333 444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
.---.+..+...+++++|+..++++ .+.|+. ..+..+...| .+.|+.+.|+.-|..+.+++|+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~-k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY-KRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH-HHHccchHHHHhhHHHhcCCCcc
Confidence 4344566677889999999999998 445654 4555666666 99999999999999999998883
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-11 Score=84.00 Aligned_cols=50 Identities=28% Similarity=0.485 Sum_probs=43.8
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
||+++||++|++|++. |++++|.++|++|.+.|+. ||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~-~~~~~a~~l~~~M~~~g~~-P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKA-GKFEEALKLFKEMKKRGIK-PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHC-cCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcC
Confidence 7888899999999998 8899999999999988888 898999988888864
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-08 Score=95.94 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=164.3
Q ss_pred HHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 210 AFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
-|.++|+++.|+++++-..+. ...-..+-.+++...-.-.++..+.+.-...+... .-+....+.-.+.....
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d----ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID----RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc----ccCHHHhhcCCceeeec
Confidence 467778888887777766544 11111112222322223334445544444433220 00111111111223446
Q ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHH
Q 038206 287 GSLDIARQVFESMPKRDLTSWNSIIL---GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYF 363 (614)
Q Consensus 287 g~~~~A~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 363 (614)
|++++|.+.|++....|...-.+|.. .+-..|+.++|++.|-++ .. -+.-+......+.+.|-...+..+|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl-h~-il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL-HA-ILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH-HH-HHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999988777665444432 356789999999999866 22 13334466667778888889999999998
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 364 DVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..... -++.|+...+.|.+.|-+.|+-..|.+.+-+- ..-| |..+..-|-.-| ....-.+.++..|++..-..|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy-idtqf~ekai~y~ekaaliqp- 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY-IDTQFSEKAINYFEKAALIQP- 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH-HhhHHHHHHHHHHHHHHhcCc-
Confidence 77742 55568999999999999999999998865443 3333 555555555555 777778999999998766554
Q ss_pred CCchhHHHHHHH-HhhcCChhhHHHHHHHHHhC
Q 038206 442 ICSGVYVLLSRV-YASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 442 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 473 (614)
+..-|..++.. +.+.|+++.|..+++....+
T Consensus 658 -~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 658 -NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 47778776655 56789999999999887653
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-07 Score=90.38 Aligned_cols=288 Identities=12% Similarity=0.093 Sum_probs=204.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (614)
|++.+|..+..+-.+.+.. ....|..-..+.-..||.+.+-+++.++.+.--.++..++-+........|+.+.|..-
T Consensus 98 G~~~qAEkl~~rnae~~e~--p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ--PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc--hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 8999999998887776633 23345556667778899999999999888764466777778888888888998888877
Q ss_pred Hhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 193 FDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 193 f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
.++. ..++.........+|.+.|++.+...++.+|.+. .--|+ +..++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-----------------e~~~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-----------------EAARL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-----------------HHHHH-----------
Confidence 7665 4457778888899999999999999999998766 21111 11111
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
...+|+.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+- .+.+..|+. .
T Consensus 228 ---e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~-Lk~~~D~~L----~ 299 (400)
T COG3071 228 ---EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDA-LKRQWDPRL----C 299 (400)
T ss_pred ---HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHH-HHhccChhH----H
Confidence 12245556665555555555556677666 235666667777788888888888888877 666666662 2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCc
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~ 424 (614)
.+-.+.+.++.+.-.+..+.-.+..+..| ..+.+|...|.+.+.+.+|.+.|+.. +.+|+..+|+-+-.++ .+.|+
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~-~~~g~ 376 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL-DQLGE 376 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH-HHcCC
Confidence 23346667777776666666666555555 55667888888888888888888765 6678888888888888 88888
Q ss_pred hHHHHHHHHHHHHhcCC
Q 038206 425 VVLSEEVAKQVIESEGG 441 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~ 441 (614)
.+.|.+..++.+-.-..
T Consensus 377 ~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 377 PEEAEQVRREALLLTRQ 393 (400)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88888888877654433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-09 Score=109.20 Aligned_cols=255 Identities=11% Similarity=0.063 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 038206 120 VLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199 (614)
Q Consensus 120 ~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 199 (614)
.++-.+...|+. ||.+||.++|..|+..|+.+.|- +|..|.-..++.+..+++.++....+.++.+.+. +|
T Consensus 11 nfla~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 345566667777 77777777777777777777777 7777776666667777777777777777766554 55
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHH-hhh---ccCCC-----hhhHHHHHHHHHhh-------CchhHHHHHHHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRR-MQI---LFEPD-----GYTFQSITSACAGL-------ATLSLGMWAHAYILR 263 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~---~~~pd-----~~t~~~ll~a~~~~-------~~~~~~~~~~~~~~~ 263 (614)
...+|+.|..+|.+.|+... ++..++ |.. ...|. ..-|-..++.|-.. -....-+.++....+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777544 222222 211 11110 00111111111000 000111122222222
Q ss_pred hccCCC-CccccHHHH---HHHHHHh-cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCC
Q 038206 264 HCDHSL-VTDVLVNNS---LIDMYCK-CGSLDIARQVFESMP-KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFS 337 (614)
Q Consensus 264 ~~~~g~-~~~~~~~~~---li~~y~~-~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 337 (614)
. +. .|...-++. .++-... ...+++-...-.... .++..+|.+.+..-.-+|+.+.|..++.+| ++.|+.
T Consensus 161 l---l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfp 236 (1088)
T KOG4318|consen 161 L---LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFP 236 (1088)
T ss_pred H---HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCC
Confidence 2 10 111110110 0111111 112222222222222 478889999999989999999999999999 999999
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 038206 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392 (614)
Q Consensus 338 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (614)
.+..-|..|+-+ .++..-+..+...|.+ .|+.|+..|+.-.+-.+...|..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe-~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQE-KGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHH-hcCCCCcchhHHHHHhhhcchhh
Confidence 999888888855 7777788888888865 69999999998877777665553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-08 Score=89.58 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=170.0
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCc--hhHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSD--VYINNSL 176 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~l 176 (614)
.|-.=++.+.. .++++|.++|-+|.+.. + -+..+-.+|.+.+.+.|..+.|..+|..+.++- +..+ ....-.|
T Consensus 38 ~Yv~GlNfLLs--~Q~dKAvdlF~e~l~~d-~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 38 DYVKGLNFLLS--NQPDKAVDLFLEMLQED-P-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHhHHHHHhh--cCcchHHHHHHHHHhcC-c-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34444444444 68899999999999865 1 244566678888999999999999999888742 1111 2234456
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLERSL---VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSL 253 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~ 253 (614)
..=|...|-+|.|+.+|..+.+.+. .....|+..|-+..+|++|++.-++..+. +..++..-|
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~---~~q~~~~eI----------- 179 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL---GGQTYRVEI----------- 179 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---CCccchhHH-----------
Confidence 6778889999999999998876433 35666888899999999999888777543 111111111
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
...|.-|...+.-..+++.|..++.+..+- .+..--.+-..+...|++.+|++.++..
T Consensus 180 -------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 180 -------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred -------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 112333444444456666666666655422 2223333444566677777777777776
Q ss_pred hhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHH
Q 038206 331 VVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL-VSNMPMKPDAV 409 (614)
Q Consensus 331 ~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~ 409 (614)
.+.+..--..+...|..+|.+.|+.+++..++..+.+. .++...-..+.+.-....-.+.|... .+.+.-+|+..
T Consensus 241 -~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~ 316 (389)
T COG2956 241 -LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR 316 (389)
T ss_pred -HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH
Confidence 44433333355566677777777777777777776542 23333333343333333334444433 33445567777
Q ss_pred HHHHHHHHH
Q 038206 410 IWRSLLDAC 418 (614)
Q Consensus 410 ~~~~ll~~~ 418 (614)
.+..||..-
T Consensus 317 gf~rl~~~~ 325 (389)
T COG2956 317 GFHRLMDYH 325 (389)
T ss_pred HHHHHHHhh
Confidence 776666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-07 Score=91.19 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=218.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHH-HHccCCcHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHH-H
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-CAYLFAFSQGKQAHAHIFKRGL--VSDVYINNSLIHFYASCGHLD-L 188 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~-~ 188 (614)
.+.++++.-.......|. |+..-+.+.+.+ .-...|+++|..+|+++.+... -.|..+|+.++-.-..+..+. .
T Consensus 241 ~q~~e~~~k~e~l~~~gf--~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGF--PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccC--CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 455666666666777774 444444444443 4577899999999999999853 125677777764443333332 2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 189 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
|..+++ +.+=-..|.-.+.+-|.-.++.++|+..|++..+--+-....|+.+-+-+....+...|.+.+..+++.
T Consensus 319 A~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi---- 393 (559)
T KOG1155|consen 319 AQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI---- 393 (559)
T ss_pred HHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc----
Confidence 333332 222234566677788888999999999999987655555677888889999999999999999999985
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--K-RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVG 345 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ 345 (614)
.+.|-..|-.|.++|.-.+...-|+-.|++.. + .|...|.+|-.+|.+.++.++|++.|... ...| +.+...+..
T Consensus 394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra-i~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA-ILLG-DTEGSALVR 471 (559)
T ss_pred CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH-Hhcc-ccchHHHHH
Confidence 56688899999999999999999999999776 3 48899999999999999999999999987 4433 346688999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhc---C-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEY---N-ITP-VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~---~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 420 (614)
|...+-+.++.++|.+.|+..++.. | +.| .....--|..-+.+.+++++|....... + .
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~---------------~-~ 535 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV---------------L-K 535 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH---------------h-c
Confidence 9999999999999999998776632 2 223 2333334666667778887776544332 1 1
Q ss_pred hcCchHHHHHHHHHHHHh
Q 038206 421 KHASVVLSEEVAKQVIES 438 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~ 438 (614)
-....++|..+++++.+.
T Consensus 536 ~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 GETECEEAKALLREIRKI 553 (559)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 133456777777776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-08 Score=92.49 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=196.4
Q ss_pred HHHHHHHHHhc---CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 038206 70 IYSRIIHFASF---ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143 (614)
Q Consensus 70 ~~~~li~~~~~---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 143 (614)
....+..+..+ |++..|++...+-.+ ..+..|-.-..+--+. |+.+.+-..+.+..+.... ++...+.+..+
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~-~~l~v~ltrar 161 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGD-DTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCC-chHHHHHHHHH
Confidence 34556666666 999999999977554 2344444445556666 9999999999999876423 45555666667
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-----------hHHHHHHHHHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL-----------VSWNVMIDAFV 212 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~ 212 (614)
.....|+...|..-..++.+.+ +.++.+.......|.+.|++.....++..+.+... .+|+.++.-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999887 44677889999999999999999999999865422 24555555544
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
..+..+.-...++.... ....++..-.+++.-+..||+.++|
T Consensus 241 ~~~~~~gL~~~W~~~pr--------------------------------------~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 241 DDNGSEGLKTWWKNQPR--------------------------------------KLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred ccccchHHHHHHHhccH--------------------------------------HhhcChhHHHHHHHHHHHcCChHHH
Confidence 44444443334444332 2344555666677777777777777
Q ss_pred HHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc
Q 038206 293 RQVFESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEY 370 (614)
Q Consensus 293 ~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 370 (614)
.++..+..++ |.. -...-.+.+-++...-++..++-....+..| ..+.+|-..|.+.+.+.+|.+.|+...
T Consensus 283 ~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--- 355 (400)
T COG3071 283 QEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--- 355 (400)
T ss_pred HHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 7776655432 222 1122234556666666666655434455555 556667777888888888888888664
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 371 NITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|+..+|+.+.+.|.+.|+.++|.+++++.
T Consensus 356 ~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 356 KLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56788888888888888888888888877764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-08 Score=94.44 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=158.2
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS 348 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~ 348 (614)
....+..+...|.+.|++++|.+.|++.. ..+...+..+...|...|++++|.+.+++. .... +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRA-LTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhC-CCCHHHHHHHHH
Confidence 35567788899999999999999998765 235678888889999999999999999987 4432 234456667777
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
.+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...|..+...+ ...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY-YLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH-HHcCCHH
Confidence 889999999999999998763222334566777888999999999999999886 3344 456777777777 8899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+|...+++..+..+. +...+..+...+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTYNQ-TAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999999998665 677778888999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.1e-08 Score=90.03 Aligned_cols=285 Identities=13% Similarity=0.108 Sum_probs=164.8
Q ss_pred cCCHHHHHHHHhhcCCCChhHHH---HHHHHHHhcCChhHHHHHHHHhhhccCCCh------hhHHHHHHHHHhhCchhH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWN---VMIDAFVQFGEFDSALKLFRRMQILFEPDG------YTFQSITSACAGLATLSL 253 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~pd~------~t~~~ll~a~~~~~~~~~ 253 (614)
..+.++|.+.|-+|.+-|..|+. +|-+.|-+.|..+.|+.+-+.+.++ ||. ...-.+-.=|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46677888888887666555543 5667777788888888877776654 221 112223333556666777
Q ss_pred HHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHH--------HHHHHHHHHHhcCCHHHHHH
Q 038206 254 GMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT--------SWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 254 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--------~~~~li~~~~~~g~~~~A~~ 325 (614)
|+.+|..+... + ..-......|+..|-+..+|++|.++-+++.+-+.. -|.-+...+....+.+.|..
T Consensus 126 AE~~f~~L~de---~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 126 AEDIFNQLVDE---G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHHhcc---h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777766653 1 112334555677777777777777766654422221 23344444445667777777
Q ss_pred HHHHHhhhcCCCccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038206 326 YFDRLVVEESFSPNSITFV-GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P 403 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 403 (614)
++.+. .. ..|+.+--+ .+-......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ .
T Consensus 202 ~l~kA-lq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 202 LLKKA-LQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHH-Hh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77655 22 334433222 2334456677777777777777553 33333556667777777777777777776665 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH---hhcCChhhHHHHHHHHHhCCCccCCC
Q 038206 404 MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY---ASARRWNDVGLVRKLMTDKGVTKEPG 480 (614)
Q Consensus 404 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~g~~~~~~ 480 (614)
..++...-..+-.-- ....-.+.|.....+-+... |+...+..|+..- +..|++.+...+++.|...-++..|.
T Consensus 278 ~~~g~~~~l~l~~li-e~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 278 TNTGADAELMLADLI-ELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccCCccHHHHHHHHH-HHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 334433333333333 22233445555554444443 4466666666655 34567888888888887766655443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-07 Score=92.31 Aligned_cols=261 Identities=11% Similarity=-0.020 Sum_probs=198.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
++...-.-..-+-..+++.+..++++...+..++....+..-|.++...|+...-..+=..+++ ..|....+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~----~yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD----LYPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCCcchhhH
Confidence 4444555556666777888888888877766566666666666666677766655555445554 356678899999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
.--|.-.|..++|++.|.+...- =...|-.....|+-.|..++|+..+... .+. ++-..-.+.-+---|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA-arl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA-ARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH-HHh-ccCCcchHHHHHHHHHHhccH
Confidence 98898899999999999876633 3478999999999999999999988765 221 222222333344458889999
Q ss_pred HHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCC--C------CC-CHHHHHHHHHHHHHhcCchH
Q 038206 357 SEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMP--M------KP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~------~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
+.|.++|.... ++.| |+...+-+.-+.-..+.+.+|..+|+..- + ++ -..+++.|-.+| ++.+.++
T Consensus 397 kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~ 472 (611)
T KOG1173|consen 397 KLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYE 472 (611)
T ss_pred HHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHH
Confidence 99999999885 5555 66677777767777888999999987651 1 11 345678888888 9999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|+..+++.+...|+ +..+|.++.-.|...|+++.|.+.|.+..
T Consensus 473 eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999997743
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-07 Score=89.28 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccC
Q 038206 279 LIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRG 354 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g 354 (614)
+...|...|++++|.+.|++.. ..+...+..+...+...|++++|.+.+++. ......| ....+..+...+...|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA-IEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHcC
Confidence 3333444444444444443322 112333444444444455555555555544 2211111 1223333444445555
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVA 432 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~ 432 (614)
++++|...+....+. .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+ ...|+.+.|..+.
T Consensus 150 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~ 226 (234)
T TIGR02521 150 DFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA-RALGDVAAAQRYG 226 (234)
T ss_pred CHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 555555555555431 1223344455555555555555555555544 111 2333343444444 5555555555555
Q ss_pred HHHHH
Q 038206 433 KQVIE 437 (614)
Q Consensus 433 ~~~~~ 437 (614)
+.+..
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 55443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=8e-06 Score=78.25 Aligned_cols=363 Identities=11% Similarity=0.066 Sum_probs=225.4
Q ss_pred HHHHHHHhc-CChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCchHHHHHHHH--------------HHHcC------
Q 038206 72 SRIIHFASF-ADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAKPQAIVLFQR--------------MIEQG------ 129 (614)
Q Consensus 72 ~~li~~~~~-g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~--------------m~~~~------ 129 (614)
-..+..|.- ++-+.|.....+.+. ....--|.|+.-+-..+++-.++.--+.+ ..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 344555555 888888888888776 33334455554444432222222211111 11111
Q ss_pred ---------CCCCCcchHHHHHHHH--HccCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038206 130 ---------NVLPDKHTFPFALKAC--AYLFAFSQGKQAHAHIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197 (614)
Q Consensus 130 ---------~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 197 (614)
.+ |+..+...-+.++ +..++...+.+.+-.+.+. -++.|+....++.++|...|+.++|...|++..
T Consensus 181 ~S~~m~~~~~~-~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 181 NSLVMHAATVP-DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhheecC-CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 22 3333444444443 3345555555555555443 356678888999999999999999999999875
Q ss_pred CCChhHHHH---HHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 198 ERSLVSWNV---MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 198 ~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
.-|..+... ..-.+.+.|+.++...+...+....+-...-|..-....-...+.+.|..+-+..++. -+.+..
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~----~~r~~~ 335 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS----EPRNHE 335 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc----Ccccch
Confidence 544433332 2334567888888877777765432122222222222223445555555555554443 111222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH-HHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL-SAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll-~a~ 350 (614)
.+-.=...+...|++++|.-.|+... .| +..+|.-|+.+|.-.|...+|.-+-++.+.. ++-+..+...+- ..|
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceee
Confidence 33333456777899999998888654 43 7889999999999999999998777665233 233334443331 222
Q ss_pred -hccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHH
Q 038206 351 -NHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVL 427 (614)
Q Consensus 351 -~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~ 427 (614)
-....-++|..+++.-. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|-..+ +....+++
T Consensus 414 ~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~-~A~Ne~Q~ 489 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIM-RAQNEPQK 489 (564)
T ss_pred ccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHH-HHhhhHHH
Confidence 23344578888887664 45665 455677888889999999999999876 5678999999998888 88888999
Q ss_pred HHHHHHHHHHhcCCCCchh
Q 038206 428 SEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~ 446 (614)
|...|..++..+|+ |..+
T Consensus 490 am~~y~~ALr~dP~-~~~s 507 (564)
T KOG1174|consen 490 AMEYYYKALRQDPK-SKRT 507 (564)
T ss_pred HHHHHHHHHhcCcc-chHH
Confidence 99999999999988 5443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-05 Score=79.72 Aligned_cols=435 Identities=10% Similarity=0.070 Sum_probs=253.4
Q ss_pred hhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc--
Q 038206 3 VAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-- 80 (614)
Q Consensus 3 ~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-- 80 (614)
+-+..+|++++ |+..-+++...+ +-+.+.+-.-+-+....+........+...+....+.. +.+ =.+|+.
T Consensus 20 n~~~~~~e~e~---a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~f---EKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEE---AVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFF---EKAYCEYR 91 (652)
T ss_pred HHhccchHHHH---HHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhH---HHHHHHHH
Confidence 34566777776 668888776554 33444455555555555655444444444442101101 222 445554
Q ss_pred -CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 038206 81 -ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHA 159 (614)
Q Consensus 81 -g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 159 (614)
+.+++|...++...+-|..+...--..+.+. +++++|+.+|+.+.+.+...-+...-..++.+-.. .+. .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-Q 162 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-H
Confidence 9999999999966665655666666678888 99999999999998876431222222333322111 111 1
Q ss_pred HHHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHhhc--------CCCChh----------HHHHHHHHHHhcCChh
Q 038206 160 HIFKRGLVSDVYINNSL---IHFYASCGHLDLANKVFDNM--------LERSLV----------SWNVMIDAFVQFGEFD 218 (614)
Q Consensus 160 ~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~ 218 (614)
.+......| ..+|..+ .-.+...|++.+|+++++.. .+.|.. .--.|...+...|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 122222222 2233333 33567789999999999776 221111 1223556677899999
Q ss_pred HHHHHHHHhhhccCCChhhHHHHH---HHHHhhCchhHH--------------HHHHHHHHHhccCCCCccccHHHHHHH
Q 038206 219 SALKLFRRMQILFEPDGYTFQSIT---SACAGLATLSLG--------------MWAHAYILRHCDHSLVTDVLVNNSLID 281 (614)
Q Consensus 219 ~A~~~~~~m~~~~~pd~~t~~~ll---~a~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~li~ 281 (614)
+|.++|....+..++|........ .+.....++..+ ......+.+. -......-+.++.
T Consensus 242 ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~----qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 242 EASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK----QKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 999999999877566654333222 222222222221 0111111110 0111222344555
Q ss_pred HHHhcCCHHHHHHHHhcCCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCH
Q 038206 282 MYCKCGSLDIARQVFESMPKRD-LTSWNSIILGFA--LHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMV 356 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~ 356 (614)
+|. +..+.+.++-...+... ...+..++.... +.....+|.+++... . .+ .|+. +.....+......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~-~~-~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF-A-DG-HPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-h-cc-CCchhHHHHHHHHHHHHhcCCH
Confidence 554 55567777776666432 334444444332 233567788888765 2 22 3433 3344455566789999
Q ss_pred HHHHHHHH--------HHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHH
Q 038206 357 SEGRDYFD--------VMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--------PMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 357 ~~a~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~ll~~~~~ 420 (614)
+.|.+++. .+.+ .+..|. +...++.+|.+.++.+.|..++.+. +-.+.....-....++-.
T Consensus 393 ~~A~~il~~~~~~~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 99999998 4432 344554 4557888899888877777666554 222222222222333436
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
++|+-++|...++++.+.+|. |..+.+.++.+|++. +.+.|..+-+.
T Consensus 470 r~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 789999999999999999999 999999999999977 56666666544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-07 Score=99.14 Aligned_cols=178 Identities=10% Similarity=0.017 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHH---------ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 114 AKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACA---------YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 114 ~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
..++|+.+|++..+.. |+.. .|..+..++. ..+++++|...++.+++.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3456777777776655 4432 3333332222 1233566666666666654 23455566666666666
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh-hhHHHHHHHHHhhCchhHHHHHHH
Q 038206 184 GHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG-YTFQSITSACAGLATLSLGMWAHA 259 (614)
Q Consensus 184 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~ 259 (614)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+. ..+...+..+...|++++|...+.
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l-~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL-DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 777777777666522 2 3445666666666677777777766666543 2221 111222222333444444544444
Q ss_pred HHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 260 YILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 260 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
.+.+. ..+.++..+..+...|...|+.++|...+.++
T Consensus 431 ~~l~~---~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 431 ELRSQ---HLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHh---ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 44432 11112223344444444455555555554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.6e-07 Score=96.21 Aligned_cols=260 Identities=12% Similarity=0.016 Sum_probs=177.8
Q ss_pred ChhHHHHHHHHHHh-----cCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHH---------hhCchhHHHHHHHHHHHh
Q 038206 200 SLVSWNVMIDAFVQ-----FGEFDSALKLFRRMQILFEPD-GYTFQSITSACA---------GLATLSLGMWAHAYILRH 264 (614)
Q Consensus 200 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~---------~~~~~~~~~~~~~~~~~~ 264 (614)
+...|...+.+-.. .+..++|+.+|++..+. .|+ ...+..+..++. ..++.+.|...++.+.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45566676666422 12357899999888765 444 444544444333 223477888888888875
Q ss_pred ccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 265 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
-+.+...+..+...+...|++++|...|++.. .| +...|..+...+...|++++|+..+++. .. +.|+..
T Consensus 334 ----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A-l~--l~P~~~ 406 (553)
T PRK12370 334 ----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC-LK--LDPTRA 406 (553)
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCCh
Confidence 34457788888889999999999999999876 34 4667888889999999999999999987 44 345432
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 038206 342 -TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIW-RSLLDA 417 (614)
Q Consensus 342 -t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 417 (614)
.+..++..+...|++++|...++...+. .+| +...+..+...|...|++++|.+.+.++ +..|+.... +.+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 2233444566688999999999988652 234 4556777888999999999999999987 445554444 444444
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+ ...| +.+...++.+.+..-. ....+..+...|+-.|+-+.+... +++.+.|
T Consensus 485 ~-~~~g--~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 Y-CQNS--ERALPTIREFLESEQR-IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H-hccH--HHHHHHHHHHHHHhhH-hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4 5555 4777777777664322 122222255667777787777766 7776654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-07 Score=93.56 Aligned_cols=236 Identities=14% Similarity=0.129 Sum_probs=166.7
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc--CC-CCccc-cHHHHHHHHHHhcCCHHHHHHHHhcCCC-------C-
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCD--HS-LVTDV-LVNNSLIDMYCKCGSLDIARQVFESMPK-------R- 302 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~m~~-------~- 302 (614)
..|+..+...|...|+++.|..+++...+... .| ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566677777777777777776665421 12 12222 2333466788999999999999887751 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----hcCC-CccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC--
Q 038206 303 ---DLTSWNSIILGFALHGRAEAALKYFDRLVV----EESF-SPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYN-- 371 (614)
Q Consensus 303 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 371 (614)
-..+++.|-..|.+.|++++|...+++.+. ..|. .|.. .-++.+...|...+.+++|..++....+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788889999999998888876521 1222 2333 3355667778999999999999887765433
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
..++ ..+++.|...|-+.|++++|++++++. +..+. ...++.|-.+| .+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~-~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY-EELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH-HHhcccchHHHHHHHHHH
Confidence 2222 467899999999999999999999886 11222 44567777788 888999999999887654
Q ss_pred ----hcCC-C-CchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 438 ----SEGG-I-CSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 438 ----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.||. | ...+|..|...|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3544 1 13567889999999999999999998765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-06 Score=85.92 Aligned_cols=276 Identities=14% Similarity=0.077 Sum_probs=167.2
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHL 186 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 186 (614)
-+-.. +++.+..++++...+.. + ++...+..=|.++...|+-.+-..+=..+++.- +..+.+|-++.-.|.-.|+.
T Consensus 253 ~~y~~-c~f~~c~kit~~lle~d-p-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 253 RLYYG-CRFKECLKITEELLEKD-P-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHc-ChHHHHHHHhHHHHhhC-C-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 34444 66777777777666654 2 455555555556666666555555545555442 44455666666666666777
Q ss_pred HHHHHHHhhcCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 187 DLANKVFDNMLERS---LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 187 ~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
++|++.|.+...-| ...|-.....|+-.|..++|+..|...-+-++-..--+.-+---|.+.++.+.|.+.+.+...
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 77777776653332 246777777777777777777766665443221111122222334556666666666666654
Q ss_pred hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 264 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. .+.|+.+.+-+.-++...+.+.+|..+|+... ...+.. ..+ ..--..++
T Consensus 409 i----~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l------------------------~~ik~~-~~e-~~~w~p~~ 458 (611)
T KOG1173|consen 409 I----APSDPLVLHELGVVAYTYEEYPEALKYFQKAL------------------------EVIKSV-LNE-KIFWEPTL 458 (611)
T ss_pred c----CCCcchhhhhhhheeehHhhhHHHHHHHHHHH------------------------HHhhhc-ccc-ccchhHHH
Confidence 2 34455566666555555566666666554321 111111 011 11244567
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
+.|-.+|.+.+..++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++||-.+-..+++.+
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 7788888888888899888888865 44557788888888888889999999888776 6678877777666654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-07 Score=93.81 Aligned_cols=231 Identities=14% Similarity=0.154 Sum_probs=130.3
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHHHhcCCHHHHHHHHhhcCC-------C--
Q 038206 136 HTFPFALKACAYLFAFSQGKQAHAHIFKR-----GL-VSDVY-INNSLIHFYASCGHLDLANKVFDNMLE-------R-- 199 (614)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-- 199 (614)
.+...+...|...|+++.|.+++.+.++. |. .|.+. ..+.+..+|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35666778888889999998888877764 21 22222 234466678888888888888877621 1
Q ss_pred --ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-------cCCChh-hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCC
Q 038206 200 --SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-------FEPDGY-TFQSITSACAGLATLSLGMWAHAYILRHCDHSL 269 (614)
Q Consensus 200 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~pd~~-t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~ 269 (614)
-..+++.|...|.+.|++++|...++...+. ..|... -++.+...|...+..+++..++....+....-+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1346777778888888888887777766443 112222 234445556666777777766665555422122
Q ss_pred Ccc----ccHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHh---
Q 038206 270 VTD----VLVNNSLIDMYCKCGSLDIARQVFESMPKR-----------DLTSWNSIILGFALHGRAEAALKYFDRLV--- 331 (614)
Q Consensus 270 ~~~----~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~--- 331 (614)
.++ ..+++.|...|.+.|++++|+++|++.... .....+.|-..|.+.++.++|.++|.+-.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 245666666666666666666666654311 11234445555555555555555554420
Q ss_pred hhcCC-CccH-HHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 332 VEESF-SPNS-ITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 332 ~~~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
+.-|. .|+. .+|..|...|...|+++.|.++.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 11111 1221 34444444455555555554444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-05 Score=73.29 Aligned_cols=374 Identities=14% Similarity=0.073 Sum_probs=221.3
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH-HHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL-KACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll-~~~~~~~~~~~a~~ 156 (614)
|++++|..++..+.+ ++...|-.+.-.+.-- |.+.+|..+-... |+......++ ...-+.++-++-..
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHH
Confidence 999999998877654 5555565555554445 7777777654332 4444444444 44557778777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHH-HHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVM-IDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
+++.+... ..-.-+|.++.--.-...+|.+++.++.. |+....|.- .-+|.+..-++-+.+++.--.+.++-
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 77776442 23334555655555678999999998854 344455553 34566777777777776665554332
Q ss_pred ChhhHHHHHHHHHh--hCchhHHHHHHHHHHHhccC-----------CCC------------c-----cccHHHHHHHHH
Q 038206 234 DGYTFQSITSACAG--LATLSLGMWAHAYILRHCDH-----------SLV------------T-----DVLVNNSLIDMY 283 (614)
Q Consensus 234 d~~t~~~ll~a~~~--~~~~~~~~~~~~~~~~~~~~-----------g~~------------~-----~~~~~~~li~~y 283 (614)
..+..+ +.+|.. .-.-..++.-...+....+. ++. | =+..--.|+--|
T Consensus 218 StiA~N--Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 218 STIAKN--LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred cHHHHH--HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 223333 333321 11111111111111111000 100 0 011222345567
Q ss_pred HhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhhhcCCCccHHH-HHHHHHHHhccCC
Q 038206 284 CKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG-------RAEAALKYFDRLVVEESFSPNSIT-FVGVLSACNHRGM 355 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~~g~~p~~~t-~~~ll~a~~~~g~ 355 (614)
.+.+++.+|..+.+++....+.-|-.---.++..| ...-|.+.|+-. -..+..-|... -.++.+++--..+
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~q 374 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQ 374 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHH
Confidence 88899999999988876444433322112222333 345566666654 44444444322 1233334444567
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-MK-PDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+++...+++.+.. +-..-|...+ .+..+++..|.+.+|+++|-.+. .+ .|..+|.+++.-|....+..+.|..++-
T Consensus 375 FddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 8888888888854 4444455544 47889999999999999998873 12 5789999999988788999988877654
Q ss_pred HHHHhcCCCCchh-HHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 434 QVIESEGGICSGV-YVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 434 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
++ +-.-+..+ ...+.+-|.+++.+=-|.+.|+.+...+-
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 43 32212222 23557789999999999999998876443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-05 Score=76.34 Aligned_cols=217 Identities=11% Similarity=0.014 Sum_probs=165.2
Q ss_pred HhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHH
Q 038206 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 291 (614)
.-.|+...|...|+......+-+...|.-+-.++....+.++..+.|....+. -+.++.+|..-..++.-.+++++
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l----dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL----DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc----CCCCCchhHhHHHHHHHHHHHHH
Confidence 34678889999999887762222222666777788999999999999999875 34567788888888889999999
Q ss_pred HHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 292 ARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 292 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
|..=|++... .++..|-.+--+..+.+++++++..|++. .+ ..+--...|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~-kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA-KK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999998774 35677777777777889999999999997 33 3444457788888889999999999999998864
Q ss_pred hcCCCCC---------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 369 EYNITPV---------LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 369 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
+.|+ +.+--+++-.-- .+++..|..++++. .+.| ....|.+|-..- .+.|+.++|+++|++...
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 2332 222222332223 38999999999887 5666 456788888777 899999999999998876
Q ss_pred hc
Q 038206 438 SE 439 (614)
Q Consensus 438 ~~ 439 (614)
+-
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 53
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00015 Score=75.36 Aligned_cols=385 Identities=11% Similarity=0.106 Sum_probs=224.7
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHH-cC----CCCchHHHHHHHHHHHcCCCCCCcchHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACA-RS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPF 140 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~-~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ 140 (614)
.+.......|.+ |+.++|..++..+.. |+-..|-..+..+. -. ....+...++|+++...- |.......
T Consensus 39 ~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y---p~s~~~~r 115 (517)
T PF12569_consen 39 AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY---PRSDAPRR 115 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC---ccccchhH
Confidence 566666777777 888888887777765 54444444333332 11 024556667777776654 44433333
Q ss_pred HHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------CCCh
Q 038206 141 ALKACAYLFAF-SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------------------ERSL 201 (614)
Q Consensus 141 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------~~~~ 201 (614)
+.-.+.....+ ..+..+...+++.|++ .+++.|-..|......+-..+++.... .|..
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 32222221122 2344555666667754 456777777776655555555555431 1222
Q ss_pred h--HHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHH
Q 038206 202 V--SWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNS 278 (614)
Q Consensus 202 ~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 278 (614)
. +|.-+...|-..|++++|++.+++.... .|+ ...|..-.+.+-+.|++..|....+..... -..|..+-+-
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L----D~~DRyiNsK 267 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL----DLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC----ChhhHHHHHH
Confidence 2 3456678888999999999999988776 444 557777888899999999999999999875 3457778888
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC------H----HHH--HHHHHHHHhcCCHHHHHHHHHHHhhhc-----CCCccHH
Q 038206 279 LIDMYCKCGSLDIARQVFESMPKRD------L----TSW--NSIILGFALHGRAEAALKYFDRLVVEE-----SFSPNSI 341 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~~~~------~----~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~-----g~~p~~~ 341 (614)
.+..+.++|++++|.+++.....++ . ..| .....+|.+.|++..|++-|..+ .+. .-+-|-.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v-~k~f~~~~~DQfDFH 346 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV-LKHFDDFEEDQFDFH 346 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHhcccccHH
Confidence 8999999999999999998877554 1 134 33456789999999998877665 221 1122333
Q ss_pred H----------HHHHHHHHhccCC-------HHHHHHHHHHHHHhcCCCC-----------ChhHHHHHHHHH---HHcC
Q 038206 342 T----------FVGVLSACNHRGM-------VSEGRDYFDVMINEYNITP-----------VLEHYGCLVDLL---ARAG 390 (614)
Q Consensus 342 t----------~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g 390 (614)
+ |..+|...-+... ...|.+++-.+-.+..... +..--..+-.-- .+..
T Consensus 347 ~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~ 426 (517)
T PF12569_consen 347 SYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKA 426 (517)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHH
Confidence 3 3333332211111 1233344333322100000 000000000000 0111
Q ss_pred CHHHHHHHHH-----------hC----CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 391 NIDEALHLVS-----------NM----PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 391 ~~~~A~~~~~-----------~m----~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
.-+++.+.-. .. +...|...... -+.....-+++|.++++-+.+..++ +..+|..-...|.
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~Ge---kL~~t~dPLe~A~kfl~pL~~~a~~-~~et~~laFeVy~ 502 (517)
T PF12569_consen 427 KKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPLGE---KLLKTEDPLEEAMKFLKPLLELAPD-NIETHLLAFEVYL 502 (517)
T ss_pred hHHHHHHHHhhhhhhhhccccccccccCCcCCCCccHH---HHhcCCcHHHHHHHHHHHHHHhCcc-chhhHHHHhHHHH
Confidence 1111111100 00 11112111111 1213334678999999999999999 9999999999999
Q ss_pred hcCChhhHHHHHHH
Q 038206 456 SARRWNDVGLVRKL 469 (614)
Q Consensus 456 ~~g~~~~a~~~~~~ 469 (614)
+.|++--|.+.+.+
T Consensus 503 Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 503 RKGKYLLALQALKK 516 (517)
T ss_pred hcCcHHHHHHHHHh
Confidence 99999888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.8e-07 Score=82.74 Aligned_cols=197 Identities=12% Similarity=0.030 Sum_probs=142.3
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
|-+.+|-.|-.+|.+..++..|+.+|.+-.+ | |+....-+...+-..++.++|.++++.. .+. -..+.....++.
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v-lk~-~~~nvEaiAcia 331 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV-LKL-HPINVEAIACIA 331 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH-Hhc-CCccceeeeeee
Confidence 4445566666777777777777777766542 3 3333344555566677788888888876 221 122334455556
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhc
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---PMKPD--AVIWRSLLDACCKKH 422 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~~ 422 (614)
..|.-.++++.|..++..+.+ .|+. ++..|+.+.-+|.-.+++|-++.-|++. -.+|+ ..+|..+-... ...
T Consensus 332 ~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va-V~i 408 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA-VTI 408 (478)
T ss_pred eccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE-Eec
Confidence 667777888888888888876 4654 5666777777777788888888777765 11243 45787777766 788
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
||+..|.+.|+-.+..+++ +...++.|.-.-.+.|++++|..+++...+.
T Consensus 409 GD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9999999999999999999 9999999999999999999999999887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-06 Score=83.74 Aligned_cols=189 Identities=14% Similarity=0.140 Sum_probs=110.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSA 349 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a 349 (614)
..|..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|.+.|++. .+ +.|+. .++..+..+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A-l~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV-LE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHH
Confidence 345566666777777777777776654 235667777777777777777777777766 33 44543 555556666
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVL 427 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~ 427 (614)
+...|++++|.+.|+...+. .|+..........+...++.++|.+.|.+. ...|+...|. +.. ...|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~--~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWN--IVE--FYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHH--HHH--HHccCCCH
Confidence 67777777777777777542 333221122222334456777777777543 2223322221 211 22344433
Q ss_pred HHHHHHHHH-------HhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 428 SEEVAKQVI-------ESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 428 a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+ +.++.+. +..+. ...+|..+...|.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~-~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAER-LCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 2333333 23333 34567777888888888888888887776544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00041 Score=70.62 Aligned_cols=394 Identities=15% Similarity=0.178 Sum_probs=228.0
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC------CCCCCcchHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------NVLPDKHTFPFA 141 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~------~~~p~~~t~~~l 141 (614)
.+|.-.+.+... |-++-+.+++++-.+-++..-+--|.-++.. ++.++|-+.+....... .+ .+...|.-+
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~-d~~~eaa~~la~vln~d~f~sk~gk-Sn~qlw~el 216 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS-DRLDEAAQRLATVLNQDEFVSKKGK-SNHQLWLEL 216 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-cchHHHHHHHHHhcCchhhhhhccc-chhhHHHHH
Confidence 456666666555 6677777777776665555566667777777 77777777776654321 11 233345544
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHh--
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGL--VSD--VYINNSLIHFYASCGHLDLANKVFDNMLER--SLVSWNVMIDAFVQ-- 213 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~-- 213 (614)
-...++..+.-...++ +.+.+.|+ -+| -..|++|.+.|.+.|.++.|..+|++..+. .+.-++.+-++|++
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence 4444444433332222 22223332 233 357899999999999999999999886443 23334443333332
Q ss_pred --------------cCCh------hHHHHHHHHhhhc------------cCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 214 --------------FGEF------DSALKLFRRMQIL------------FEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 214 --------------~g~~------~~A~~~~~~m~~~------------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
.|+. +-.+.-|+.+... -+-+..+|..-.. ...|+..+-...+..+
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHH
Confidence 1221 1222223322211 0111222222221 2334455556677777
Q ss_pred HHhccCCCCcc--ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 038206 262 LRHCDHSLVTD--VLVNNSLIDMYCKCGSLDIARQVFESMPKRDL-------TSWNSIILGFALHGRAEAALKYFDRLVV 332 (614)
Q Consensus 262 ~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (614)
++..++...+. ...|..+.+.|-..|+++.|..+|++..+-+- .+|-.-...=.++.+++.|+++++.. .
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A-~ 452 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA-T 452 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-h
Confidence 77544433322 34688899999999999999999998875332 34555555556788899999988765 2
Q ss_pred hcCCC----------c-cHHH------HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 333 EESFS----------P-NSIT------FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 333 ~~g~~----------p-~~~t------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
...-. | -... |...++.--..|-++....+++.+..-.-..|.+.. .....+-...-++++
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEES 530 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHH
Confidence 21111 1 1122 233333334557788888888888764333444332 222334556678899
Q ss_pred HHHHHhC-C-CC-CCH-HHHHHHHHHHHHhc--CchHHHHHHHHHHHHhcCCCCc-hh-HHHHHHHHhhcCChhhHHHHH
Q 038206 396 LHLVSNM-P-MK-PDA-VIWRSLLDACCKKH--ASVVLSEEVAKQVIESEGGICS-GV-YVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 396 ~~~~~~m-~-~~-p~~-~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~g~~~~a~~~~ 467 (614)
.+++++- + ++ |++ ..|++.+.-+..+- ..+++|..+|+++++.-| |.. .+ |......-.+-|....|+.++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999875 2 22 454 47888777763332 468999999999999544 332 22 223333334568888888888
Q ss_pred HHHH
Q 038206 468 KLMT 471 (614)
Q Consensus 468 ~~m~ 471 (614)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 8743
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00035 Score=72.62 Aligned_cols=395 Identities=12% Similarity=0.077 Sum_probs=243.6
Q ss_pred CCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 61 LPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 61 ~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
+. .| + .+|..|.-+... |+++.+-+.|++... .....|+.+-..+... |.-..|+.+.+.-......++|..
T Consensus 319 ~q-nd-~-ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa-g~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 319 FQ-ND-A-AIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA-GSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hc-ch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh-ccchHHHHHHHhhcccccCCCcch
Confidence 44 56 7 889888888888 999999999987653 4566788888888888 888899999887766553313333
Q ss_pred hHHHHHHHHH-ccCCcHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHhhcCCC-
Q 038206 137 TFPFALKACA-YLFAFSQGKQAHAHIFKR--GL--VSDVYINNSLIHFYASC-----------GHLDLANKVFDNMLER- 199 (614)
Q Consensus 137 t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~f~~m~~~- 199 (614)
.+-..-+.|. +.+..+++..+-..++.. +. ......|-.+--+|+.. ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444454 456677777666666551 11 11223344444444322 1134567777766433
Q ss_pred ----ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 200 ----SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 200 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
++.-|-++ -|+..++.+.|++..++...- -.-+...|..+.-.++..+++..|..+........ |. |..
T Consensus 475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~--N~~ 548 (799)
T KOG4162|consen 475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GD--NHV 548 (799)
T ss_pred CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hh--hhh
Confidence 22233222 355567888888888887766 55667777777777777888888888777666532 11 100
Q ss_pred HHHHHHHHHHhcCCHHHH--------------------------HHHHhcCC----CC-CH-HHHHHHHHHHHhcCCHHH
Q 038206 275 VNNSLIDMYCKCGSLDIA--------------------------RQVFESMP----KR-DL-TSWNSIILGFALHGRAEA 322 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A--------------------------~~~~~~m~----~~-~~-~~~~~li~~~~~~g~~~~ 322 (614)
....-+..-...++.++| .+.+..+. ++ +. .++..+.. .+. -+...
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~ 626 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKS 626 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhh
Confidence 000001111112333333 22222222 11 21 22222222 111 11111
Q ss_pred HHHHHHHHhhhcCCCccH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 323 ALKYFDRLVVEESFSPNS--------ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 323 A~~l~~~m~~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
+..-.. | ...-+.|+. ..+......+.+.+..+++..-+.+..+ -.+.....|......+...|..++
T Consensus 627 ~~se~~-L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 627 AGSELK-L-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cccccc-c-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 100000 2 222222322 2233445567788888999877777643 333366777777788889999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHH--HHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 395 ALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEE--VAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 395 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
|.+.|... -+.|+ +.+-.++-..+ ...|+...|.. ++..+.+.+|. +...|-.|..++.+.|+.++|.+-|...
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~l-le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELL-LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHH-HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99988776 66775 55666777777 88899888888 99999999999 9999999999999999999999999877
Q ss_pred HhC
Q 038206 471 TDK 473 (614)
Q Consensus 471 ~~~ 473 (614)
.+-
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=80.61 Aligned_cols=229 Identities=13% Similarity=0.108 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHH
Q 038206 205 NVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYC 284 (614)
Q Consensus 205 ~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~ 284 (614)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-++|.+....+.|..++..-.+ .++.|+....-....+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld----~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD----SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh----cCCchhhhhhhhHHHHH
Confidence 34455555555555555555544433 33444555555555555555555555555544 23444444444455555
Q ss_pred hcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 038206 285 KCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 285 ~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
..++.++|.++++...+ -|+.+..++..+|.-.++++-|+..++++ ...|+. +...|..+--+|.-.++++-+..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi-LqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI-LQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH-HHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 56666666666665542 24444445555566666666666666666 555543 23445555555666666666666
Q ss_pred HHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 362 YFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 362 ~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
-|...... --.|+ ..+|..|-....-.|++.-|.+-|+-. .-.| +...++.|---- .+.|+++.|..+++.+..
T Consensus 380 sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~-~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA-ARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH-hhcCchHHHHHHHHHhhh
Confidence 66655442 22232 234555555555666666666666554 1122 344555554444 566677777777766666
Q ss_pred hcCCC
Q 038206 438 SEGGI 442 (614)
Q Consensus 438 ~~~~~ 442 (614)
..|..
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 65553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-08 Score=60.62 Aligned_cols=34 Identities=41% Similarity=0.576 Sum_probs=28.1
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 038206 164 RGLVSDVYINNSLIHFYASCGHLDLANKVFDNML 197 (614)
Q Consensus 164 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 197 (614)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00041 Score=70.58 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC-----CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN-----PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
.+|-.-+....+ |++...+.+|++... .-...|...|.-..+. +-++-++.+|++.++.. |. .-.--+
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~---P~--~~eeyi 176 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVA---PE--AREEYI 176 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcC---HH--HHHHHH
Confidence 344444555555 777777777776443 2334577777666666 88888889998888754 33 355667
Q ss_pred HHHHccCCcHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--hhHHHHHHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRG------LVSDVYINNSLIHFYASCGHLD---LANKVFDNMLER--S--LVSWNVMID 209 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~~--~--~~~~~~li~ 209 (614)
..++..+++++|.+.+...+... .+.+...|+-+-+..++.-+.- ....++..+..+ | ...|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 77788888888888888775321 2445566777766666554322 334555555443 3 347999999
Q ss_pred HHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
-|.+.|.+++|..+|++.... ..+..-|+.+.++|+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~-v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT-VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-heehhhHHHHHHHHHHH
Confidence 999999999999999887765 23334455566665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-05 Score=72.15 Aligned_cols=371 Identities=11% Similarity=0.087 Sum_probs=225.0
Q ss_pred cCChhHHHHHHhcCCC--C-ChhhHHHHHH-HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 80 FADLDYAFRVFYQIEN--P-NSFTWNTLIR-ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 80 ~g~~~~A~~~f~~m~~--~-~~~~~~~li~-~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
+.++..|+.+++--.. + ...+.+..|. .+.+- |++++|+..|.-+.... . |+...+..+.-...-.|.+.+|+
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL-gdY~~Al~~Y~~~~~~~-~-~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL-GDYEEALNVYTFLMNKD-D-APAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh-ccHHHHHHHHHHHhccC-C-CCcccchhHHHHHHHHHHHHHHH
Confidence 3556666666543322 1 1113333343 45566 99999999999887754 3 56666666665666678888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG 235 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~ 235 (614)
++-... +.++-....|.+.-.+.++-++-..+-+.+... ..---+|.+..-..-.+.+|+++|.+.... .|+-
T Consensus 112 ~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey 184 (557)
T KOG3785|consen 112 SIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEY 184 (557)
T ss_pred HHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-Chhh
Confidence 775543 233344455666777788877766666555332 222233444444455789999999998765 4555
Q ss_pred hhHHHHHHH-HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh--cCCHHHH--HHHHhcCC----------
Q 038206 236 YTFQSITSA-CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK--CGSLDIA--RQVFESMP---------- 300 (614)
Q Consensus 236 ~t~~~ll~a-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~m~---------- 300 (614)
...+.-+.. +.+..-.+.+.++.....+. ++.++...|.......+ .|+..++ ..+-+...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 555554444 46777778888888777764 44445555544433333 2333222 12222221
Q ss_pred CCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-h----ccC
Q 038206 301 KRD---------------------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC-N----HRG 354 (614)
Q Consensus 301 ~~~---------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~-~----~~g 354 (614)
+.| +..---|+-.|.+.++..+|..+.+++ ....|-......+..+- . ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 011 112233455678899999999998865 33555555555544432 1 222
Q ss_pred CHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhcCchHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMP---MKPDAVIWRSLLDACCKKHASVVLSEE 430 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~~a~~ 430 (614)
.+.-|.+.|+..-+ .+..-|. .--.++...+.-..++++.+-.++.+. ..-|...+| +..+. ...|++.+|++
T Consensus 338 HlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk-~atgny~eaEe 414 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAK-LATGNYVEAEE 414 (557)
T ss_pred HHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHH-HHhcChHHHHH
Confidence 34567777765532 3444332 223455666666677888888777762 223444444 55677 77899999999
Q ss_pred HHHHHHHhcCCCCchhHH-HHHHHHhhcCChhhHHHHHHHHH
Q 038206 431 VAKQVIESEGGICSGVYV-LLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|-++.....+ |..+|. .|.+.|.++++.+-|+.++-++.
T Consensus 415 lf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 415 LFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99988777777 777775 56789999999999998875543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-05 Score=78.20 Aligned_cols=91 Identities=14% Similarity=0.003 Sum_probs=49.7
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhc
Q 038206 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQF 214 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~ 214 (614)
|......+...|+.++|...|...++.. +.+...|+.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 4444444555566666666555555543 22345555566666666666666666655522 2 234555555555666
Q ss_pred CChhHHHHHHHHhhh
Q 038206 215 GEFDSALKLFRRMQI 229 (614)
Q Consensus 215 g~~~~A~~~~~~m~~ 229 (614)
|++++|++.|++...
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-08 Score=60.51 Aligned_cols=33 Identities=42% Similarity=0.703 Sum_probs=27.5
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 788888888888888888888888888888874
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-05 Score=80.85 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
++.-+...|...|+.++|.++.+..++ ..|+ +..|..-...|-+.|++.+|.+.++.. ...+ |...-+--...+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 334445556677777777777777654 2343 666777777777777777777777666 2233 344444444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhH--------HHHHHHHhhcCChhhHHHHHHHHH
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVY--------VLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+.|+++.|.+++......+..|....+ .-...+|.+.|++..|.+-|..+.
T Consensus 273 -LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 -LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred -HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6777777777777777665533222111 345677788888888777665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-05 Score=77.33 Aligned_cols=181 Identities=11% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVG 345 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ 345 (614)
|.......|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-++|..+..+++..+- .||. .|-..
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~------h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKH 887 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh------ChhhhhHHHHH
Confidence 33334444544455556677888888888777777653 56777788888777777643 2222 45555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CCHHHHHHH------H
Q 038206 346 VLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMK----PDAVIWRSL------L 415 (614)
Q Consensus 346 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~l------l 415 (614)
+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-+-. .-...|.-- +
T Consensus 888 f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaav 957 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAV 957 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHH
Confidence 6666677777777777665542 2456677777777777777776554210 011222211 1
Q ss_pred HHHHHhcCch-------------HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 416 DACCKKHASV-------------VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 416 ~~~~~~~~~~-------------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..+ .++|-+ +.|..+.+-..+.. -.....-+.-.+...|++++|-+-+-+..+.
T Consensus 958 kll-nk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 958 KLL-NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHH-HhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 112 333333 33333333222211 1234445555667788888887776655443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00021 Score=72.43 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
|..+...+...|++++|..+|++..
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3345556666666666666666543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=78.06 Aligned_cols=156 Identities=12% Similarity=0.072 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh----c
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN----H 352 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~----~ 352 (614)
.....+|...|++++|.++++.- .+.......+..|.+.++++.|.+.++.| ++. ..| .+...+..++. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~-~~~--~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNM-QQI--DED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHH-HCC--SCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc--CCc-HHHHHHHHHHHHHHhC
Confidence 33345677789999999988876 56667777888999999999999999999 653 333 44444555443 2
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCch-HHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASV-VLSE 429 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~-~~a~ 429 (614)
...+.+|.-+|+++.. ...+++.+.+.+..++...|++++|.+++.+. ...| |..+...++... ...|+. +.+.
T Consensus 180 ~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~-~~~gk~~~~~~ 256 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS-LHLGKPTEAAE 256 (290)
T ss_dssp TTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH-HHTT-TCHHHH
T ss_pred chhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH-HHhCCChhHHH
Confidence 3468899999999865 55678888999999999999999999988875 3344 455666666666 555655 7788
Q ss_pred HHHHHHHHhcCC
Q 038206 430 EVAKQVIESEGG 441 (614)
Q Consensus 430 ~~~~~~~~~~~~ 441 (614)
+.+.++....|.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 888888888776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0013 Score=67.32 Aligned_cols=378 Identities=10% Similarity=0.055 Sum_probs=205.5
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|+-++|......-.. .+.+.|..+--.+-.. .++++|+..|+.....+ || ...+.-+--.-++.++++....
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d-K~Y~eaiKcy~nAl~~~---~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD-KKYDEAIKCYRNALKIE---KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhh-hhHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 778888777765544 4566677665444444 78888888888888766 44 3444444444456667776666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHH------HHHHHhcCChhHHHHHHH
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE-----RSLVSWNVM------IDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~ 225 (614)
...++.+.. +.....|..+.-++.-.|+...|..+.++..+ ++...|.-. ......+|..++|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 666665542 22344566666677777788888777766522 333333222 234556777777777766
Q ss_pred HhhhccCCChhhH-HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH-HHHhcCCCC-
Q 038206 226 RMQILFEPDGYTF-QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR-QVFESMPKR- 302 (614)
Q Consensus 226 ~m~~~~~pd~~t~-~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~~~- 302 (614)
.-...+ .|...+ .+-.....+.+++++|..++..++.. .+.+...|--+..++.+-.+.-++. .+|....+.
T Consensus 210 ~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 210 DNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred hhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 654431 122222 23334456777788888887777764 2333334444455554333333333 555544311
Q ss_pred -CHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH----HHHHHHHHHHhcC-----
Q 038206 303 -DLTSWNSIILGFALHGRAE-AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE----GRDYFDVMINEYN----- 371 (614)
Q Consensus 303 -~~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~~----- 371 (614)
-...-..+--......... ..-+++..+ ...|+++-...+.++.. .....+- +..+...+.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~-l~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~-~~~f~~~ 359 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPL-LSKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSG-TGMFNFL 359 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHH-hhcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhccc-ccCCCcc
Confidence 0000000000011112222 233344444 56666554333333322 2111111 1222222211 11
Q ss_pred -----CCCChh--HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhcCCC
Q 038206 372 -----ITPVLE--HYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWR-SLLDACCKKHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 372 -----~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
-+|+.. ++-.++..|-+.|+++.|...++.. .-.|+.+-.. .=-..+ ...|+++.|..++++..+++..
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~-kH~G~l~eAa~~l~ea~elD~a- 437 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIF-KHAGLLDEAAAWLDEAQELDTA- 437 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHH-HhcCChHHHHHHHHHHHhccch-
Confidence 134443 4456788888899999999988876 4456544332 222334 5668999999999998888755
Q ss_pred CchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 443 CSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
|...-.--..-..++.+.++|.++.....+.|.
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 433222344445678889999998888877664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00045 Score=70.45 Aligned_cols=388 Identities=13% Similarity=0.132 Sum_probs=243.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcC----CC-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQI----EN-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALK 143 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m----~~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~ 143 (614)
..+-.++..|..+++...+++.+.+ ++ +++.+---+ .+... |+-++|.+..+.-.+.++ -+.+.|..+.-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL--~L~~l-g~~~ea~~~vr~glr~d~--~S~vCwHv~gl 83 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGL--TLNCL-GKKEEAYELVRLGLRNDL--KSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccc--hhhcc-cchHHHHHHHHHHhccCc--ccchhHHHHHH
Confidence 5677778878775555544444444 33 333322111 23334 888999999888877653 36667777777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 220 (614)
.+....++++|.+.|..+.+.+ +.|..++.-|.-.=++.|+++.....-....+ .....|..+..++.-.|+...|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999876 44666776666666677777776666555533 3467899999999999999999
Q ss_pred HHHHHHhhhc--cCCChhhHHHHHHH------HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 221 LKLFRRMQIL--FEPDGYTFQSITSA------CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 221 ~~~~~~m~~~--~~pd~~t~~~ll~a------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
..+.++..+. -.|+...+.-.... ....|.++.+.+........ +......-..-.+.+.+.+++++|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 9999999887 35777766544332 34566666666655544432 222333444567788999999999
Q ss_pred HHHHhcCCC--CCHHHHHHHH-HHHHhcCCHHHHH-HHHHHHhhhcCCCccHHHH-HHHHHHHhccCCHHHHHHHHHHHH
Q 038206 293 RQVFESMPK--RDLTSWNSII-LGFALHGRAEAAL-KYFDRLVVEESFSPNSITF-VGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 293 ~~~~~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~l~~~m~~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
..++..+.. ||..-|.-.+ .++.+-.+.-+++ .+|... ... .|-...- ..=++........+..-.++..+.
T Consensus 239 ~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l-s~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 239 VKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAIL-SEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-hhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 999998874 4555555444 4443344444454 666655 221 2211111 111111122223333444555555
Q ss_pred HhcCCCCChhHHHHHHHHHHHcCCHH----HHHHHHHhC-C------------CCCCHHHHHH--HHHHHHHhcCchHHH
Q 038206 368 NEYNITPVLEHYGCLVDLLARAGNID----EALHLVSNM-P------------MKPDAVIWRS--LLDACCKKHASVVLS 428 (614)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m-~------------~~p~~~~~~~--ll~~~~~~~~~~~~a 428 (614)
+ .|+++-. ..+...|-.-...+ -+..+...+ + ..|....|.. +...+ -..|+++.|
T Consensus 316 ~-Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~-D~~g~~~~A 390 (700)
T KOG1156|consen 316 S-KGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY-DKLGDYEVA 390 (700)
T ss_pred h-cCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH-HHcccHHHH
Confidence 5 3776532 23333332211111 112222222 1 2467666665 55666 778999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
+...+.++..-|. -..-|..-.+++...|.+++|..++++..+.+.
T Consensus 391 ~~yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 391 LEYIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999998887666 456677777999999999999999999877554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00029 Score=71.32 Aligned_cols=197 Identities=11% Similarity=-0.008 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccH--HHHHHHHHH
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNS--ITFVGVLSA 349 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~--~t~~~ll~a 349 (614)
...+...+...|++++|...+++.. ..+...+..+...|...|++++|...+++. .... ..|+. ..|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~-l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW-RDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh-hhccCCCcchhHHHHHHHHHH
Confidence 3344556666777777777776554 224455666666667777777777777665 2211 11222 223345556
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHY-G--CLVDLLARAGNIDEALHL---VSN---M-PMKPDAVIWRSLLDACC 419 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~~~~ 419 (614)
+...|+.++|..+++.........+..... + .++.-+...|....+.+. ... . +.............++
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~- 274 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL- 274 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH-
Confidence 667777777777777664321111111111 1 222333333422222221 111 1 1001112222344455
Q ss_pred HhcCchHHHHHHHHHHHHhcCCC--------CchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 420 KKHASVVLSEEVAKQVIESEGGI--------CSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...|+.+.|...++.+....-.+ ..........++...|++++|.+.+......+
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66788888888888876532110 12233455566779999999999998876544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=70.48 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVD 384 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~ 384 (614)
...|..+|.+.|+...|..-+++. .+ ..|+. .++..+...|.+.|..+.|.+-|+...+ +.| +..+.|..-.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekA-L~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKA-LE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 445566777777777777777766 33 34443 5566666677777888888777777753 344 4566677777
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 385 LLARAGNIDEALHLVSNMPMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
.+|..|++++|...|++.-..|+ ..+|..+.-.. .+.|+.+.|...+++.++.+|+ .+.+...+.+...+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA-LKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH-hhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccc
Confidence 77888888888888877622222 34555554444 6778888888888888888888 777778888888888888
Q ss_pred hhHHHHHHHHHhCCC
Q 038206 461 NDVGLVRKLMTDKGV 475 (614)
Q Consensus 461 ~~a~~~~~~m~~~g~ 475 (614)
-.|...++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 888888887766654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00011 Score=75.45 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=89.1
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
......+..+..+.+.+... . .-..-|..+.+.|+..|+++.|+++|-+.. .++--|..|.++|+++.|.
T Consensus 742 ai~akew~kai~ildniqdq---k--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQ---K--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhh---c--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 33444444454444444332 1 112234455555666666666666654432 2333455556666666665
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038206 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (614)
++-.+. .|.......|.+-..-.-+.|++.+|.+++-.+. .|+. -|.+|-+.|..++.+++.++-.-
T Consensus 812 kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 812 KLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 555432 2222233334333333445555555555543331 1332 34555555555555555554320
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 405 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
..-..|-..+-.-+ ...|++..|+.-|-+. .-|.+-.++|-..+.|++|.++-+
T Consensus 879 d~l~dt~~~f~~e~-e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKEL-EAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhHHHHHHHHHH-HhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 11122333344444 4445555555444332 234455566666666666666553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=87.35 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=165.8
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
-+.....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|++. .+. -|.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA-cqy---cd~ 1529 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA-CQY---CDA 1529 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH-HHh---cch
Confidence 3455778888999999999999999999877521 3457999998888889888999999987 432 232
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 038206 341 -ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD---AVIWRSLL 415 (614)
Q Consensus 341 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll 415 (614)
..|..|..-|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|..++.+. ..-|. .....-..
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 5577889999999999999999999999776 56778999999999999999999999876 32232 33333333
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCcc
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTK 477 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 477 (614)
..- .++|+.+++..+|+..+...|+ -...|+.++++-.+.|..+.++.+|++....++.+
T Consensus 1608 qLE-Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1608 QLE-FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHH-hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 333 6789999999999999999999 88999999999999999999999999999988765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0016 Score=62.97 Aligned_cols=295 Identities=14% Similarity=0.117 Sum_probs=191.6
Q ss_pred CChhhH-HHHHHHHHc--CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh-
Q 038206 96 PNSFTW-NTLIRACAR--SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVY- 171 (614)
Q Consensus 96 ~~~~~~-~~li~~~~~--~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~- 171 (614)
|+...| ...|.++++ . ++...|...+-.+......+-|......+.+.+...|+..++.-.|+..... .|+..
T Consensus 191 ~~~~dwls~wika~Aq~~~-~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~ 267 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFN-FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE 267 (564)
T ss_pred CCCccHHHHHHHHHHHHHh-cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh
Confidence 444434 333444433 3 5555555555545444444134556777778888999999999999987653 33322
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 172 ---INNSLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 172 ---~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
.|..| +.+.|+.+.-..+...+... ....|-.-........+++.|+.+-.+-.+.-+-+...+..--.+.
T Consensus 268 ~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 268 AMDLYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred hHHHHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 23333 34667777766666655332 3444555555566677888888887766543222333444444567
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH-HHHH-hcCCH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSII-LGFA-LHGRA 320 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li-~~~~-~~g~~ 320 (614)
...++.++|.-.|...... -+.+...|.-|+..|...|++.+|.-.-+... ..+..+.+.+- ..+. ....-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L----ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML----APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HhccchHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhH
Confidence 7888999988888888764 34578899999999999999998866544322 12333333221 1111 12234
Q ss_pred HHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 038206 321 EAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (614)
++|.+++++- ..+.|+- -..+.+...|...|..+.+..+++... ...||...-+.|.+.+...+.+++|++.|
T Consensus 421 EKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 421 EKAKKFAEKS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHHhh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 6788888754 4467776 445566677889999999999999886 45689999999999999999999999988
Q ss_pred HhC-CCCC
Q 038206 400 SNM-PMKP 406 (614)
Q Consensus 400 ~~m-~~~p 406 (614)
... .+.|
T Consensus 495 ~~ALr~dP 502 (564)
T KOG1174|consen 495 YKALRQDP 502 (564)
T ss_pred HHHHhcCc
Confidence 754 4444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0017 Score=69.56 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=177.1
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 262 (614)
-+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+. -|+..|.-+++++.+.|.+++-.+.+..+.
T Consensus 1088 i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 35666666666665544 57999999999999999999888765 377889999999999999999888888887
Q ss_pred HhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHH
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSIT 342 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t 342 (614)
+. .-.| .+-+.||-+|+|.+++.+-+++.. -||+.-...+-.-|...|.++.|.-+|... .-
T Consensus 1161 kk---~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN 1222 (1666)
T KOG0985|consen 1161 KK---VREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SN 1222 (1666)
T ss_pred Hh---hcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hh
Confidence 76 4444 345678889999998888777653 466666666677777788888887777654 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhc
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKH 422 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~ 422 (614)
|..|...+...|.+..|.+--+.. .+..+|.-+-.+|...+.+.-|. +-.+.+-....-..-|+.-| ...
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Y-q~r 1292 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYY-QDR 1292 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHH-Hhc
Confidence 666666777777777776543322 35667777777776655444332 11112223455566788888 888
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|-+++-+.+++..+.+... ....|.-|.-.|++- +.++..+-++..-
T Consensus 1293 GyFeElIsl~Ea~LGLERA-HMgmfTELaiLYsky-kp~km~EHl~LFw 1339 (1666)
T KOG0985|consen 1293 GYFEELISLLEAGLGLERA-HMGMFTELAILYSKY-KPEKMMEHLKLFW 1339 (1666)
T ss_pred CcHHHHHHHHHhhhchhHH-HHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 9999988888887777666 677888888888765 4555555555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-06 Score=78.92 Aligned_cols=191 Identities=9% Similarity=-0.000 Sum_probs=128.9
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESM-PKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m-~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
.|.......+...+...++-+.+..-+++. .++ |..........+...|++++|+++++.- .+.....
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~a 135 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLA 135 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHH
Confidence 555555544444443334555555555433 332 2222222223456679999999888532 3445566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH---YGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACC 419 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 419 (614)
..+..+.+.++++.|.+.++.|. .+..|... ..+.+..+.-.+.+.+|..+|+++ ...++..+.+.+..+.
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~- 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH- 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH-
Confidence 77888999999999999999995 34444332 233344443345799999999999 3347888888888888
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh-hhHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW-NDVGLVRKLMTD 472 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 472 (614)
...|++++|++++.+..+.+|+ ++.+...++-+....|+. +.+.+.+..++.
T Consensus 212 l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999999998 889988899999999998 667788888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.8e-05 Score=81.93 Aligned_cols=224 Identities=15% Similarity=0.156 Sum_probs=131.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC-----hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 202 VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD-----GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 202 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd-----~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
..|-..|.-..+.++.++|.+++++....+.+. ...|.++++.-..-|.-+...++|+.+.+. ..--.+|
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-----cd~~~V~ 1533 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-----CDAYTVH 1533 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-----cchHHHH
Confidence 344444555555555555555555544332111 112333333333333444444444444443 1223467
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHH-HHHHHHHH
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SIT-FVGVLSAC 350 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t-~~~ll~a~ 350 (614)
..|...|.+.+..++|-++|+.|.++ ....|...+..+.++++.+.|..++.+. .. .-|- .+- ..-....-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA-L~--~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA-LK--SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH-Hh--hcchhhhHHHHHHHHHHH
Confidence 77888888888888888888888743 5677888888888888888888888776 22 2233 222 22233334
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHhcCch
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM---PMKP--DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~~~~~ 425 (614)
.+.|+.+.|+.+|+.... ..+.....|+.+|++-.+.|+.+.++.+|++. ++.| =-..|.--+.-- .++|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE-k~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE-KSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH-HhcCch
Confidence 567888888888888875 44445677888888888888888888888876 2222 123444444433 566665
Q ss_pred HHHHHHHHHHH
Q 038206 426 VLSEEVAKQVI 436 (614)
Q Consensus 426 ~~a~~~~~~~~ 436 (614)
+.++.+=.++.
T Consensus 1688 ~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1688 KNVEYVKARAK 1698 (1710)
T ss_pred hhHHHHHHHHH
Confidence 55555544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00018 Score=64.16 Aligned_cols=186 Identities=16% Similarity=0.086 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
...|.-+|.+.|+...|..-+++..+.-+-+..++..+...+...|..+.+.+.++...+. -+-+-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCCccchhhhhhHHH
Confidence 3345556666666666666666665443333344444444445555555555555544443 223345666666666
Q ss_pred HhcCCHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHH
Q 038206 284 CKCGSLDIARQVFESMP-KRD----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVS 357 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~ 357 (614)
|..|++++|...|+... .|+ ..+|.-+.-+..+.|+.+.|.+.|++- .. ..|+. .+...+.....+.|++-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra-L~--~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA-LE--LDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH-HH--hCcCCChHHHHHHHHHHhcccch
Confidence 66666666666666544 332 245555555555666666666666654 22 22322 44445555555666666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHL 398 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (614)
.|..+++.... +..++..+.-..|..--+.|+-+.|-+.
T Consensus 191 ~Ar~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 191 PARLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66666665543 2235555544455555555555554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=80.07 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=168.8
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEA 322 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 322 (614)
.+.|++..|.-.|+..++. -+-+...|--|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+
T Consensus 296 m~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 4677888888888888874 455678888888888888888888888887763 367777888888999999999
Q ss_pred HHHHHHHHhhhcCCC--------ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 323 ALKYFDRLVVEESFS--------PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 323 A~~l~~~m~~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
|++.|+.. .....+ ++..+-.. ..+.....+....++|-.+....+..+|..++.+|--.|--.|.+++
T Consensus 372 Al~~L~~W-i~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 372 ALKMLDKW-IRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHH-HHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999876 332110 01100000 12223334556667777776666766788888999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 395 ALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 395 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|.+-|+.. .++| |..+||-|-..+ +...+.++|...|.+++++.|. -..+..-|.-.|...|.+++|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtL-AN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATL-ANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHh-cCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999987 6777 678999999999 9999999999999999999999 66666778889999999999999886544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0019 Score=74.37 Aligned_cols=329 Identities=10% Similarity=0.020 Sum_probs=168.9
Q ss_pred HHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC------Cc--hhHHHHHHHH
Q 038206 108 CARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV------SD--VYINNSLIHF 179 (614)
Q Consensus 108 ~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~ 179 (614)
+... |.++.+...+..+...... .+..........+...|+++++...+....+.--. +. ......+...
T Consensus 384 l~~~-g~~~~l~~~l~~lp~~~~~-~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 384 LFNQ-GELSLLEECLNALPWEVLL-ENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHhc-CChHHHHHHHHhCCHHHHh-cCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3344 6666666655554221111 12222223333445667888888777766543111 11 1122223344
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhcCChhHHHHHHHHhhhc---c-CCC--hhhHHHHHHHH
Q 038206 180 YASCGHLDLANKVFDNMLE----RSL----VSWNVMIDAFVQFGEFDSALKLFRRMQIL---F-EPD--GYTFQSITSAC 245 (614)
Q Consensus 180 ~~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~-~pd--~~t~~~ll~a~ 245 (614)
+...|++++|...+++... .+. ..++.+...+...|++++|...+.+.... . .+. ..+...+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5667888888877776422 121 23455566677788888888888777643 1 111 12333444556
Q ss_pred HhhCchhHHHHHHHHHHHhccC-CCCc---cccHHHHHHHHHHhcCCHHHHHHHHhcCCC------C--CHHHHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDH-SLVT---DVLVNNSLIDMYCKCGSLDIARQVFESMPK------R--DLTSWNSIILG 313 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~------~--~~~~~~~li~~ 313 (614)
...|+++.|...+......... +... ....+..+...+...|++++|...+++... + ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 6778888887777666553211 2111 122344455556667888877777665431 1 12233344555
Q ss_pred HHhcCCHHHHHHHHHHHhhhc-CCCccHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHH
Q 038206 314 FALHGRAEAALKYFDRLVVEE-SFSPNSITF-----VGVLSACNHRGMVSEGRDYFDVMINEYNITPV---LEHYGCLVD 384 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~~-g~~p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~ 384 (614)
+...|+.++|.+.+.+. ... ........+ ...+..+...|+.+.+..++...... ..... ...+..+..
T Consensus 622 ~~~~G~~~~A~~~l~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 622 SLARGDLDNARRYLNRL-ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHcCCHHHHHHHHHHH-HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 66777777777777665 321 000000001 01112334467777777766554221 10000 011234555
Q ss_pred HHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 385 LLARAGNIDEALHLVSNM-------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+...|+.++|...+++. +..++ ..+...+-.++ ...|+.++|...+.++.+....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~-~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY-WQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhCc
Confidence 666777777777666654 11121 12334444445 6677777777777777766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00033 Score=74.68 Aligned_cols=397 Identities=11% Similarity=-0.025 Sum_probs=217.7
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
..+|..+....+. ++.. ..|..|-..|.. .+...|.+.|+...+ -|..++......|++. ..++.|..+.-..
T Consensus 476 ~al~ali~alrld-~~~a-paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 476 LALHALIRALRLD-VSLA-PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHhcc-cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHH
Confidence 5666666666666 5534 789999999988 888899999988766 4677888999999999 9999999883222
Q ss_pred HHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWN 205 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~ 205 (614)
-+......-...|..+--.+...+++..+..-|+...+.. +.|...|..|..+|.++|+...|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2221000111223333334566778888888888877765 447888999999999999999999999887554433322
Q ss_pred -H--HHHHHHhcCChhHHHHHHHHhhhc---cCC----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhc----cCCCCc
Q 038206 206 -V--MIDAFVQFGEFDSALKLFRRMQIL---FEP----DGYTFQSITSACAGLATLSLGMWAHAYILRHC----DHSLVT 271 (614)
Q Consensus 206 -~--li~~~~~~g~~~~A~~~~~~m~~~---~~p----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~----~~g~~~ 271 (614)
. ....-+..|.+.+|+..+...... -.| -..++.-+...+...|-...+..+++..++.. ......
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 223346689999999988877543 111 11122222222222222222222222222110 001111
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhcCCH---H---HHHHHHHHHhhhcCCCccHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLT--SWNSIILG-FALHGRA---E---AALKYFDRLVVEESFSPNSIT 342 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~~g~~p~~~t 342 (614)
+...|-. ..+|..+|-... ||.+ .+..++.. .-..+.. + -+.+.+-. ......+..+
T Consensus 712 ~~~~Wi~----------asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~---hlsl~~~~~~ 777 (1238)
T KOG1127|consen 712 DRLQWIV----------ASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA---HLSLAIHMYP 777 (1238)
T ss_pred hHHHHHH----------HhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH---HHHHhhccch
Confidence 1112211 123334444433 3321 12222221 1111111 1 01111110 0001111223
Q ss_pred HHHHHHHHh-------ccC-CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038206 343 FVGVLSACN-------HRG-MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWR 412 (614)
Q Consensus 343 ~~~ll~a~~-------~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~ 412 (614)
+..+...|. ..+ +...|..-+...++ --.-+...|+.|--. +..|.+.-|..-|-+- ..+.+..+|.
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~ 854 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL 854 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence 222222211 111 12244444444432 112344556555433 5556666665544333 2233677888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.+-..+ .++.+++.|...|.....+.|. |...|......-...|+.-++..+|..
T Consensus 855 NlgvL~-l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 855 NLGVLV-LENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccceeE-EecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 877777 8888999999999999999988 888887766666677777777777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0014 Score=68.46 Aligned_cols=408 Identities=14% Similarity=0.111 Sum_probs=240.1
Q ss_pred HHHhhhcCCCCChhhHHHHH---HhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC-
Q 038206 21 FNNNRNEGSFNNHSSLLSSL---TECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN- 95 (614)
Q Consensus 21 ~~~m~~~g~~p~~~~~~~~l---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~- 95 (614)
+.+++...+.-|...|-.+. ..|+....+-+.+++....-+. . . ..|+.+-..|+. |.-..|..+.+.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~--~-e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-E--H-ERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-h--H-HHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 34444444666666655544 3444444444444444443333 2 3 678888888888 888889888876532
Q ss_pred ---CChhhHHHHH-HHHHcCCCCchHHHHHHHHHHHc--CCC-CCCcchHHHHHHHHHcc-----------CCcHHHHHH
Q 038206 96 ---PNSFTWNTLI-RACARSVDAKPQAIVLFQRMIEQ--GNV-LPDKHTFPFALKACAYL-----------FAFSQGKQA 157 (614)
Q Consensus 96 ---~~~~~~~~li-~~~~~~~~~~~~A~~~~~~m~~~--~~~-~p~~~t~~~ll~~~~~~-----------~~~~~a~~~ 157 (614)
|+..+--.|+ ..|.++.+..+++++.-.+.... +.. ......|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 4334433333 34455547777877776666551 110 02233444444443321 124567788
Q ss_pred HHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccC
Q 038206 158 HAHIFKRGL-VSDVYINNSLIHFYASCGHLDLANKVFDNM----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFE 232 (614)
Q Consensus 158 ~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 232 (614)
++..++.+. .|++..| |---|+..++++.|.....+. ...+...|..+.-.+...+++.+|+.+.+.......
T Consensus 467 le~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 888888763 3333333 333477788899998887765 334778999999999999999999999887765522
Q ss_pred CChhhHHHHHHHHHhhCchhHHHH-------HHH----------HHHHhc-cCCCC-------ccccHHHHHHHHHHhcC
Q 038206 233 PDGYTFQSITSACAGLATLSLGMW-------AHA----------YILRHC-DHSLV-------TDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~-------~~~----------~~~~~~-~~g~~-------~~~~~~~~li~~y~~~g 287 (614)
-|..-...-+..-...++.+++.. +++ ...... ..|+. ....++..+.......+
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 211111111111111222222221 111 111100 00111 01223333322222111
Q ss_pred ---CHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHH
Q 038206 288 ---SLDIARQVFESMPKRD------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVS 357 (614)
Q Consensus 288 ---~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~ 357 (614)
..+.....+...+.|+ ...|......+.+.+..++|...+.+. . ++.|-. ..|...-..+...|..+
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea-~--~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEA-S--KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-H--hcchhhHHHHHHhhHHHHHHHhhH
Confidence 1111112222222333 235666777888899999998887765 2 233433 34444445566788999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALH--LVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVA 432 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~ 432 (614)
+|.+.|.... -+.| ++...+++..++.+.|+..-|.+ ++..+ .+.| +...|..+-..+ .+.|+.+.|-+.|
T Consensus 702 EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 702 EAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHH
Confidence 9999998774 5666 46778899999999998877777 77776 5566 678999999999 9999999999999
Q ss_pred HHHHHhcCC
Q 038206 433 KQVIESEGG 441 (614)
Q Consensus 433 ~~~~~~~~~ 441 (614)
....++...
T Consensus 778 ~aa~qLe~S 786 (799)
T KOG4162|consen 778 QAALQLEES 786 (799)
T ss_pred HHHHhhccC
Confidence 999998766
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0014 Score=75.42 Aligned_cols=326 Identities=11% Similarity=-0.005 Sum_probs=199.0
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC----CCC---h-----hHHHHHHHHHHhc
Q 038206 147 YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML----ERS---L-----VSWNVMIDAFVQF 214 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~---~-----~~~~~li~~~~~~ 214 (614)
..|+++.+...+..+.......+..........+...|++++|...++... ..+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 445666555555443211111222333444555667899999988887651 111 1 1112233455679
Q ss_pred CChhHHHHHHHHhhhc-cCCCh----hhHHHHHHHHHhhCchhHHHHHHHHHHHhccC-CC-CccccHHHHHHHHHHhcC
Q 038206 215 GEFDSALKLFRRMQIL-FEPDG----YTFQSITSACAGLATLSLGMWAHAYILRHCDH-SL-VTDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~-~~pd~----~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-g~-~~~~~~~~~li~~y~~~g 287 (614)
|++++|...+++.... ...+. .+...+...+...|+++.+...+......... |- .........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987664 22222 23344455567889999999988887754211 11 111234556677888999
Q ss_pred CHHHHHHHHhcCCC-------C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc--CCCcc--HHHHHHHHHHHhc
Q 038206 288 SLDIARQVFESMPK-------R----DLTSWNSIILGFALHGRAEAALKYFDRLVVEE--SFSPN--SITFVGVLSACNH 352 (614)
Q Consensus 288 ~~~~A~~~~~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~p~--~~t~~~ll~a~~~ 352 (614)
+++.|...+++... + ....+..+...+...|++++|...+.+. ... ...+. ...+..+......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-LEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-HHhhhccCchHHHHHHHHHHHHHHH
Confidence 99999988776431 1 1223444555667789999999998876 321 11122 2334445556778
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHHcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHh
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHY-----GCLVDLLARAGNIDEALHLVSNMPMK--PDA----VIWRSLLDACCKK 421 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 421 (614)
.|+.++|.+.+.....-..-......+ ...+..+...|+.+.|.+.+...... ... ..+..+..++ ..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~-~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ-IL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH-HH
Confidence 899999999988874421111111111 11234456689999999998776211 111 1133455555 77
Q ss_pred cCchHHHHHHHHHHHHhc----CCC-CchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 422 HASVVLSEEVAKQVIESE----GGI-CSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
.|+.++|...++++.... ..+ ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987752 111 12456678889999999999999999887643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0075 Score=61.25 Aligned_cols=404 Identities=11% Similarity=0.033 Sum_probs=216.8
Q ss_pred HHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHH--HHHH--HcC
Q 038206 40 LTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTL--IRAC--ARS 111 (614)
Q Consensus 40 l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~l--i~~~--~~~ 111 (614)
++.....++. .+....++..+ + .+ . .....=+-.... +.+++|+++.+.-.. ..+++.. =.+| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-p-dd-~-~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-P-DD-E-DAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-C-Cc-H-hhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHc
Confidence 3444555555 33333444444 2 44 4 444444444445 899999977655432 1122222 2333 355
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHH
Q 038206 112 VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS-DVYINNSLIHFYASCGHLDLAN 190 (614)
Q Consensus 112 ~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~ 190 (614)
+..++|+..++ |..+.|..+...-...|.+.+++++|..+|..+.+++.+- +...-..++.+- -.-.+.
T Consensus 93 -nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 93 -NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred -ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 78889988877 3231233345555566788999999999999998877432 222222232221 111222
Q ss_pred HHHhhcCCCChhHHHHHH---HHHHhcCChhHHHHHHHHhhh----c-cCCCh---------h-hHHHHHHHHHhhCchh
Q 038206 191 KVFDNMLERSLVSWNVMI---DAFVQFGEFDSALKLFRRMQI----L-FEPDG---------Y-TFQSITSACAGLATLS 252 (614)
Q Consensus 191 ~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~----~-~~pd~---------~-t~~~ll~a~~~~~~~~ 252 (614)
+.+..+.....+|..+- -.+...|++.+|++++....+ . ..-|. . .-..+.-++-..|+.+
T Consensus 163 -~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 -LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 35555444444554443 456778999999999998822 1 11110 0 1122333456789999
Q ss_pred HHHHHHHHHHHhccCCCCcccc----HHHHHHHHHHhcCCHH-HHHHHHhcCCCCCH--------------HHH-HHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVL----VNNSLIDMYCKCGSLD-IARQVFESMPKRDL--------------TSW-NSIIL 312 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~----~~~~li~~y~~~g~~~-~A~~~~~~m~~~~~--------------~~~-~~li~ 312 (614)
++..++..+++. .++|.. .-|.|+.+-.-..-.+ .++..|+.....+. +.. +.++.
T Consensus 242 ea~~iy~~~i~~----~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 242 EASSIYVDIIKR----NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHHHh----cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 334432 2333332221111111 23333333322111 111 22233
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHc
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH--RGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARA 389 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 389 (614)
.| .+..+.+.++-... .+..|. ..+-.++..+.+ ......+.+++..... +.+-. ..+.-.++......
T Consensus 318 l~--tnk~~q~r~~~a~l---p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASL---PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HH--hhhHHHHHHHHHhC---CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhc
Confidence 23 23344444444322 233443 344455555433 2246667777776644 33333 45556778888899
Q ss_pred CCHHHHHHHHH--------hCC-CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc--CCCCch----hHHHHHHHH
Q 038206 390 GNIDEALHLVS--------NMP-MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE--GGICSG----VYVLLSRVY 454 (614)
Q Consensus 390 g~~~~A~~~~~--------~m~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~ 454 (614)
|+++.|.+++. .++ +.-...+..+++.-+ .+.++.+.|..++.+++..- -.+... ++.-+...-
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~-~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALY-YKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHH-HhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 99999999988 331 222233444455555 66677777777777766431 111222 333344445
Q ss_pred hhcCChhhHHHHHHHHHhC
Q 038206 455 ASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~~ 473 (614)
.+.|+-++|...++++.+.
T Consensus 469 lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HhcCchHHHHHHHHHHHHh
Confidence 6779999999999998874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0013 Score=68.80 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=103.2
Q ss_pred CCCCCCchHHHHHHHHH--HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-------
Q 038206 60 ALPQQHKTLLIYSRIIH--FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG------- 129 (614)
Q Consensus 60 g~~~~~~~~~~~~~li~--~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~------- 129 (614)
|+..-| . .+-.++++ +|.. |+.+.|.+-...+. +...|..|-+.+.+. ++.+-|.-.+-.|....
T Consensus 720 gle~Cd-~-~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT-~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 720 GLENCD-E-STRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKT-RRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred CccccC-H-HHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhh-ccccHHHHhhhhhhhhhhHHHHHH
Confidence 444234 5 66666766 5666 99999988776665 456799999999988 88887776666654311
Q ss_pred -CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHH
Q 038206 130 -NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-SLVSWNVM 207 (614)
Q Consensus 130 -~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~l 207 (614)
...|+ .+=..+.-.....|.+++|+.+|.+..+.+ .|=..|-..|.|++|.++-+.-..- =..||..-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 11132 222333334467899999999999987754 3445677889999999987643211 12356666
Q ss_pred HHHHHhcCChhHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~ 228 (614)
..-+-..++.+.|++.|++..
T Consensus 865 A~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcC
Confidence 666667788999999888764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.4e-05 Score=77.05 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=174.0
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
+++|-...-..+...+.++|-...|..+|++ ...|.-.|.+|+..|+..+|..+..+- .+ -+||..-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~-le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQE-LE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHH-hc--CCCcchhHHHhh
Confidence 4556666777889999999999999999997 457888899999999999999998865 33 688999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 425 (614)
+..-...-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| -..+|-.+-.+. .+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~A-Lqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAA-LQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHH-HHHhhh
Confidence 9888888899999999877542 1111222223478999999988764 4455 566888777666 788999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHH
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQ 505 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (614)
+.|.+.|.......|+ +...|+.+..+|.+.|+-.+|...+++..+-+..+ |-.+.+..+. .- .-+..++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-----w~iWENymlv--sv--dvge~ed 605 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-----WQIWENYMLV--SV--DVGEFED 605 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-----Ceeeechhhh--hh--hcccHHH
Confidence 9999999999999999 99999999999999999999999999988766443 4444443322 11 1356677
Q ss_pred HHHHHHHHHHHHhhCCccC
Q 038206 506 IYGFLDLIDEKLKSRGYTP 524 (614)
Q Consensus 506 ~~~~~~~l~~~m~~~g~~p 524 (614)
+...+.++.. |+..+-.|
T Consensus 606 a~~A~~rll~-~~~~~~d~ 623 (777)
T KOG1128|consen 606 AIKAYHRLLD-LRKKYKDD 623 (777)
T ss_pred HHHHHHHHHH-hhhhcccc
Confidence 7776666554 55544433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00096 Score=61.61 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=159.9
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHhc
Q 038206 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNV-MIDAFVQF 214 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~~~ 214 (614)
+++++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4555555555666666666665554443 22444455566666666667777666666632 22222211 12344556
Q ss_pred CChhHHHHHHHHhhhccCCChhhHHHHHHHH--HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 215 GEFDSALKLFRRMQILFEPDGYTFQSITSAC--AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+.+.+|+.+...|... |+...-..-+.+. -..+++..++.+.++.-. ..+..+.+...-...+.|+++.|
T Consensus 92 ~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred cccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchheeeccccHHHH
Confidence 6777777777766532 1111111111111 122333333333322211 12233333334444566666666
Q ss_pred HHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 293 RQVFESMPK----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 293 ~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.+-|+...+ .....||.-+..| +.|+.+.|+++..++ .+.|++--.. ++ .|...++.++ +
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEI-ieRG~r~HPE-lg--------IGm~tegiDv-----r 227 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEI-IERGIRQHPE-LG--------IGMTTEGIDV-----R 227 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHH-HHhhhhcCCc-cC--------ccceeccCch-----h
Confidence 666665542 2334555444333 456666666666666 5555432110 00 0000000000 0
Q ss_pred hcCCCCChh-------HHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 369 EYNITPVLE-------HYGCLVDLLARAGNIDEALHLVSNMP----MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 369 ~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
.--.|-.. .+|.-...+-+.|+++.|.+-+..|| .+.|.+|...+.-. ...+++..+.+-+.-+++
T Consensus 228 -svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~--n~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 228 -SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM--NMDARPTEGFEKLQFLLQ 304 (459)
T ss_pred -cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh--cccCCccccHHHHHHHHh
Confidence 00001111 22333334567899999999999995 23567777665322 445677778888888888
Q ss_pred hcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.+|- ...||..++-.|++..-++-|..++-+
T Consensus 305 ~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 305 QNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8886 578999999999999999999988854
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00027 Score=66.85 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhc-CCCccH-HHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMPK--RD-L---TSWNSIILGFALHGRAEAALKYFDRLVVEE-SFSPNS-ITFVG 345 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-g~~p~~-~t~~~ 345 (614)
..+-.+...|.+.|++++|...|+++.+ |+ . .+|..+...|.+.|++++|+..++++ .+. .-.|.. .++..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~-l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF-IRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHCcCCCchHHHHHH
Confidence 3445555556666666666666665442 21 1 24555556666666666666666665 321 111111 12222
Q ss_pred HHHHHhcc--------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038206 346 VLSACNHR--------GMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLD 416 (614)
Q Consensus 346 ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 416 (614)
+-.++... |+.++|.+.|+.+.+. .|+ ...+..+..... ...... .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~~-----------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRLA-----------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHHH-----------HHHHHHHH
Confidence 22233322 4555666666665542 222 111111111000 000000 00112334
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC-C-CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG-I-CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+ ...|+++.|...++++++..|+ | ....+..+..+|.+.|++++|...++.+..+
T Consensus 175 ~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FY-LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HH-HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45 7789999999999999998765 1 2467889999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0041 Score=58.76 Aligned_cols=184 Identities=12% Similarity=0.085 Sum_probs=93.7
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES---MPKRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A 323 (614)
..|+...+......+++. .+.|...+..-..+|...|++..|..=++. +...|..+.--+-.-+...|+.+.+
T Consensus 167 ~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred cCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 344444444444444442 344555666666666666666666544433 2334555555555555666666666
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHH-------------HHHhccCCHHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHH
Q 038206 324 LKYFDRLVVEESFSPNSITFVGVL-------------SACNHRGMVSEGRDYFDVMINEYNITPV-----LEHYGCLVDL 385 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~~~t~~~ll-------------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~ 385 (614)
+...++- ..+.||....-..- ......+.+.++.+-.+...+. .|. ...+..+-.+
T Consensus 243 L~~iREC---LKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 243 LKEIREC---LKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHH---HccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence 6666544 22555552211100 1112234444444444444331 222 1223344455
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 386 LARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+...|++.+|++...+. .+.|| +.++.-=..+| .-...++.|+.-|+.+.+.++.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~-l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY-LGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHhcCcc
Confidence 55666666666665554 44454 55555555555 5555666666666666666655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0021 Score=64.35 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=75.0
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|+++.|...|-+... +|.+.|+-=..+|+.. |++++|++=-.+-++.. |+ ...|+....++...|++++|..
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~-~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL-GSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHH-hhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHHHHHH
Confidence 899999999976543 5778888888899999 99999887766666655 55 3578888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHH
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
-|..-++.. +.+...++-|.+++
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhh
Confidence 988877764 44566777788777
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0022 Score=59.33 Aligned_cols=278 Identities=11% Similarity=0.094 Sum_probs=153.8
Q ss_pred HHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHH-HHHHHcc
Q 038206 74 IIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA-LKACAYL 148 (614)
Q Consensus 74 li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~l-l~~~~~~ 148 (614)
.+.-+.+ .++++|.+++..-.+ ++....+.+-..|... .++..|-+.|+++-... |...-|..- ...+-+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHh
Confidence 3333344 567777776654433 2455566666666666 77777777777776554 444333221 2233455
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 149 FAFSQGKQAHAHIFKRGLVSDVYINNSLIH--FYASCGHLDLANKVFDNML-ERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
+.+..|..+...|... ++...-..-+. ..-..+|+..+..+.++.+ +.+..+.+...-..-+.|++++|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 5666666666655432 11111111111 1223567777777777776 3455555555555667777777777777
Q ss_pred Hhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-------------cc--------cHHHHHHH--
Q 038206 226 RMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-------------DV--------LVNNSLID-- 281 (614)
Q Consensus 226 ~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-------------~~--------~~~~~li~-- 281 (614)
...+- ---....|+..+. ..+.++...|.+....++.. |+.. |+ ..-+.++.
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR---G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER---GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh---hhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 76654 2222345554443 33556667777776666665 4322 11 11223333
Q ss_pred -----HHHhcCCHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 038206 282 -----MYCKCGSLDIARQVFESMPKR-----DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 282 -----~y~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
.+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+ .... +-...||..++-.||
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL-L~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL-LQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH-HhcC-CCChHHHHHHHHHHh
Confidence 345678888888888888743 566654432221 234444444444333 2221 123478888888888
Q ss_pred ccCCHHHHHHHHHH
Q 038206 352 HRGMVSEGRDYFDV 365 (614)
Q Consensus 352 ~~g~~~~a~~~~~~ 365 (614)
+..-++.|-+++.+
T Consensus 322 KNeyf~lAADvLAE 335 (459)
T KOG4340|consen 322 KNEYFDLAADVLAE 335 (459)
T ss_pred hhHHHhHHHHHHhh
Confidence 88888888777654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0051 Score=64.64 Aligned_cols=201 Identities=12% Similarity=0.079 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC-----------CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN-----------PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.+|..+..|+.+ .+++-|.-.+..|.. .|..--.+-..+++-.-|..++|..+|++..+.+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D------- 830 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD------- 830 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-------
Confidence 789999999999 888888887777763 1111112222333322288999999999887643
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------------
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER----------------- 199 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------------- 199 (614)
.+=+.|-..|.+++|.++-+.=-+-.+. .||-....-+-..+|.+.|++.|++...+
T Consensus 831 ---LlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 831 ---LLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3445667789999998876543222222 34444455555678888888888765221
Q ss_pred ------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccc
Q 038206 200 ------SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV 273 (614)
Q Consensus 200 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 273 (614)
|...|.-....+-..|+.+.|+.+|...+. |-++.+..+-.|+.++|-++-++- -|.
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk~~kAa~iA~es---------gd~ 967 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGKTDKAARIAEES---------GDK 967 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccCchHHHHHHHhc---------ccH
Confidence 333344344444456667777777766542 334444455566666665554322 244
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcC
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m 299 (614)
...-.|..+|-..|++.+|..+|-+.
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777777777777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00035 Score=63.62 Aligned_cols=118 Identities=10% Similarity=0.074 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc--hHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS--VVLS 428 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~--~~~a 428 (614)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+-.++....|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566666666666654 33457888888888999999999999888877 4455 556666666553255566 5899
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 429 EEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.++++++++.+|+ +..++..+...+.+.|++++|...++++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998 8888999999999999999999999988764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.7e-06 Score=51.49 Aligned_cols=34 Identities=32% Similarity=0.681 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
+||+||.+|++.|++++|.++|++| ...|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M-~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEM-LERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCC
Confidence 7999999999999999999999999 889999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00028 Score=64.18 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=117.0
Q ss_pred HHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHH
Q 038206 75 IHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 75 i~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
+.+|.. |+++........+..|. ..+... ++.++++..++...+.+ + .|...|..+...+...|+++.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~-~~~~~~i~~l~~~L~~~-P-~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQ-QTPEAQLQALQDKIRAN-P-QNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCc-hhHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHCCCHHH
Confidence 345666 88777655544332221 012234 77788888888888876 3 467788889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCC--HHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 154 GKQAHAHIFKRGLVSDVYINNSLIHF-YASCGH--LDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 154 a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
|...++...+.. +.+..++..+..+ |...|+ .++|.+++++..+. +..++..+...+.+.|++++|+..|+++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999876 4467778888876 567787 59999999998443 6678999999999999999999999999
Q ss_pred hhccCCChhhHHHH
Q 038206 228 QILFEPDGYTFQSI 241 (614)
Q Consensus 228 ~~~~~pd~~t~~~l 241 (614)
.+..+|+......+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 88767766554433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=50.22 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK 135 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~ 135 (614)
++||++|.+|++. |++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~-~~~~~a~~~~~~M~~~g~~-p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKA-GRVEEALELFKEMLERGIE-PDV 35 (35)
T ss_pred CcHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCC-CCC
Confidence 4788888888888 8888888888888888877 763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.044 Score=59.26 Aligned_cols=142 Identities=10% Similarity=0.174 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
...|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.+.|.+++-..++....++ .-.|.+.+ .||
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHH
Confidence 457999999999999999999888543 25577999999999999999999988877653 56666654 899
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH
Q 038206 384 DLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV 463 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 463 (614)
-+|++.+++.+-++++. -||..-...+-.-| ...|.++.|.-+|.. .+.|.-|...+...|.++.|
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc-f~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRC-FEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHH-hhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888774 47888888888888 888889888877763 45666677777777777776
Q ss_pred HHHHHH
Q 038206 464 GLVRKL 469 (614)
Q Consensus 464 ~~~~~~ 469 (614)
...-++
T Consensus 1240 VD~aRK 1245 (1666)
T KOG0985|consen 1240 VDAARK 1245 (1666)
T ss_pred HHHhhh
Confidence 655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00079 Score=63.62 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=121.4
Q ss_pred CCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccc---cHHHHHHHHHHhcCCHHHHHHHHhcCCC--CC-H-
Q 038206 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDV---LVNNSLIDMYCKCGSLDIARQVFESMPK--RD-L- 304 (614)
Q Consensus 232 ~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~-~- 304 (614)
......+......+...|+++.|...++.+.+. .+.+. ..+..+...|.+.|++++|...|+++.+ |+ .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 344556777778889999999999999999875 22222 4667788999999999999999998863 21 1
Q ss_pred --HHHHHHHHHHHhc--------CCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 305 --TSWNSIILGFALH--------GRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 305 --~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
.++..+..++.+. |+.++|.+.|+++ .. ..|+.. ....+... .. ..... .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~--~~p~~~~~~~a~~~~-~~---------~~~~~-~----- 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL-IR--RYPNSEYAPDAKKRM-DY---------LRNRL-A----- 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH-HH--HCCCChhHHHHHHHH-HH---------HHHHH-H-----
Confidence 2455555555554 7789999999988 43 244442 22111110 00 00001 0
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM----PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
.....+...|.+.|++++|...+++. |-.| ....|..+..++ ...|++++|...++.+....|
T Consensus 167 ---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~-~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 167 ---GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY-LKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCC
Confidence 01124666788889999988888776 2223 346778888888 888999999988887766544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.019 Score=54.46 Aligned_cols=293 Identities=9% Similarity=0.051 Sum_probs=168.4
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHH---HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHH-HHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIR---ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPF-ALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~ 156 (614)
|++.+|+.-|....+-|+..|-++.+ .|... |+...|+.=+...++.. ||-..-.. -...+.+.|.++.|.+
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-cCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHHHHH
Confidence 66666666666666655555555442 45555 66666666666555543 55321100 0113456666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
=|+.+++...... ....++.+.--.++-+.+ -..+..+.-.|+...|+.....+.+..+-|..
T Consensus 128 DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~ 190 (504)
T KOG0624|consen 128 DFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQPWDAS 190 (504)
T ss_pred HHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcCcchhH
Confidence 6666665532111 111111111111111111 12333445567777777777777665455666
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCHH----HHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--RDLT----SWNSI 310 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~~~~----~~~~l 310 (614)
.+..-..++...|.+..|..-...+.+. . ..++...--+-..+...|+.+.++...++..+ ||.. .|..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askL---s-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKL---S-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc---c-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 6666666777777777776666666554 2 22344455566677777888887777776653 3321 12211
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHH---HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hh
Q 038206 311 ---------ILGFALHGRAEAALKYFDRLVVEESFSPNSIT---FVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LE 377 (614)
Q Consensus 311 ---------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~ 377 (614)
+......+++.++++-.+.. .+.......++ +..+-.++...+.+.+|++.-.++. .+.|+ +.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~v-lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~ 342 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKV-LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHH
Confidence 12345577888888888776 33221111233 3344455677899999999888885 55665 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
++---.++|.-...+++|+.-|+..
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8777788888888899999888776
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=49.07 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
.+||++|.+|++.|+++.|.++|++| ++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M-~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEM-KEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCCCC
Confidence 46777777777777777777777777 6777766
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00029 Score=60.51 Aligned_cols=92 Identities=5% Similarity=-0.164 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+...|++++|...|+.. ...| +...|..+...+ ...|++++|...|+++.+.+|. ++..+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTW-MMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 334555556666666666666654 3333 445555555555 6666666666666666666666 66666666666666
Q ss_pred cCChhhHHHHHHHHHh
Q 038206 457 ARRWNDVGLVRKLMTD 472 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~ 472 (614)
.|+.++|...++...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00057 Score=70.77 Aligned_cols=215 Identities=14% Similarity=0.161 Sum_probs=158.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 038206 167 VSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA 246 (614)
Q Consensus 167 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~ 246 (614)
+|-.-.-..+...+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+...
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 444445567788899999999999999875 5688899999999999999998887766 4888888888888777
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A 323 (614)
...-++.+.++....... .-..+.......++++++.+.|+.-.+ --..+|-..-.+..+.+++..|
T Consensus 469 d~s~yEkawElsn~~sar----------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR----------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH----------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 777777777766554432 111222222336888888888875442 2456787777778888888888
Q ss_pred HHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 324 LKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.+.|..- -...||. ..|+.+-.+|.+.++..+|...+.+..+ .+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rc---vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRC---VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHH---hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888754 2356665 6788888888888888888888888876 44 334555666677778888888888888776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=58.52 Aligned_cols=176 Identities=14% Similarity=0.079 Sum_probs=128.1
Q ss_pred CHHHHHHHHhcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHH
Q 038206 288 SLDIARQVFESMP------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 288 ~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
++.+++..-+.++ .++...+...+.+.........+..++.+- .. -.-...-|..-+ .+...|.++.|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~-~~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKR--SK-RGGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHH--hC-ccchHHHHHHHH-HHHHhcccchHHH
Confidence 4566666666666 235556666666544433333333333322 22 111223344444 3456789999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.+..+.+ ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+-.++ .+.|+..+|..+++......
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al-l~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL-LKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HhcCChHHHHHHHHHHhhcC
Confidence 9999875 45557888888899999999999999999988 55676 66777788888 99999999999999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
|. |+..|..|..+|...|+..++.....++.
T Consensus 405 p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PE-DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CC-CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99 99999999999999999999888876643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00046 Score=59.31 Aligned_cols=113 Identities=10% Similarity=-0.058 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038206 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRS 413 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 413 (614)
+.|+. +.....++...|++++|...|..... --+.+...|..+..++.+.|++++|...|+.. ...| +...|..
T Consensus 22 ~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~ 97 (144)
T PRK15359 22 VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ 97 (144)
T ss_pred cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44554 34455667788888888888888764 22336777888888888888888888888877 3444 5667777
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
+..++ ...|+.++|...|++.++..|. ++..+.....+.
T Consensus 98 lg~~l-~~~g~~~eAi~~~~~Al~~~p~-~~~~~~~~~~~~ 136 (144)
T PRK15359 98 TGVCL-KMMGEPGLAREAFQTAIKMSYA-DASWSEIRQNAQ 136 (144)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 77777 8888999999999999888888 777776554444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.6e-05 Score=48.10 Aligned_cols=32 Identities=44% Similarity=0.708 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNV 131 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~ 131 (614)
.+||.+|.++++. |+++.|.++|++|.+.|+.
T Consensus 2 ~ty~~ll~a~~~~-g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 2 HTYNALLRACAKA-GDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred cHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC
Confidence 4677777777777 7777777777777777665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00082 Score=61.31 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=125.8
Q ss_pred hCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC
Q 038206 59 TALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD 134 (614)
Q Consensus 59 ~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~ 134 (614)
....|.| . .+ ..+-..|-. |+-+.+..+...... .|....+..+....++ |++.+|+..|++..... + +|
T Consensus 60 ~~~~p~d-~-~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~-g~~~~A~~~~rkA~~l~-p-~d 133 (257)
T COG5010 60 VLRNPED-L-SI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRN-GNFGEAVSVLRKAARLA-P-TD 133 (257)
T ss_pred HhcCcch-H-HH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHh-cchHHHHHHHHHHhccC-C-CC
Confidence 3444344 4 55 333333333 877777777766432 3555667788899999 99999999999998765 4 78
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAF 211 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~ 211 (614)
..+|+.+--+|.+.|+++.|+.-|.+..+.. .-++.+.|.|.-.|.-.|+.+.|..++... +..|...-..+....
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 8999999999999999999999999998864 335666777877888899999999999876 334777888888888
Q ss_pred HhcCChhHHHHHHHHhh
Q 038206 212 VQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~ 228 (614)
...|++++|..+-..-.
T Consensus 213 ~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 213 GLQGDFREAEDIAVQEL 229 (257)
T ss_pred hhcCChHHHHhhccccc
Confidence 99999999988876554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0031 Score=57.60 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 038206 308 NSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLA 387 (614)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (614)
.-+-..+...|+-+....+.... ...-.-|..............|++.+|...|.+... .-++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~--~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKS--AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhh--hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHH
Confidence 33445566666666666666543 111122223333456666677777777777777753 55567777777777777
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHH
Q 038206 388 RAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGL 465 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 465 (614)
+.|++++|..-|.+. .+.| +....+.|...+ .-.|+.+.|..++......++. |+..-..|..+-...|++++|.+
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~-~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSL-LLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHH-HHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 777777777666554 3333 334455555555 6667777777777777776666 66666666667777777777766
Q ss_pred HH
Q 038206 466 VR 467 (614)
Q Consensus 466 ~~ 467 (614)
+.
T Consensus 224 i~ 225 (257)
T COG5010 224 IA 225 (257)
T ss_pred hc
Confidence 54
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0038 Score=61.21 Aligned_cols=182 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccC
Q 038206 282 MYCKCG-SLDIARQVFESMP---KRDLTSWNSIILGFALHGRA--EAALKYFDRLVVEESFSP-NSITFVGVLSACNHRG 354 (614)
Q Consensus 282 ~y~~~g-~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g 354 (614)
.+.+.| ++++++..++++. .++..+|+..-..+.+.|+. ++++.+++++ .. ..| |..+|.....++.+.|
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka-l~--~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI-LS--LDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH-HH--hCcccHHHHHHHHHHHHHhh
Confidence 333344 3455555555443 22344455443333334432 4455555555 22 222 3345555555555556
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHhc---
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA---GN----IDEALHLVSN-MPMKP-DAVIWRSLLDACCKKH--- 422 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~--- 422 (614)
+++++.+.++.+++. . .-+...|+.....+.+. |. .+++.++..+ +...| |...|+.+...+ ...
T Consensus 157 ~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll-~~~~~~ 233 (320)
T PLN02789 157 GWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF-KDDKEA 233 (320)
T ss_pred hHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hcCCcc
Confidence 666666666666542 1 12333343333333332 22 2345555533 34445 567787777777 552
Q ss_pred -CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC------------------ChhhHHHHHHHH
Q 038206 423 -ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR------------------RWNDVGLVRKLM 470 (614)
Q Consensus 423 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m 470 (614)
++..++...+.+..+.++. ++.....|++.|+... ..++|.++++.+
T Consensus 234 l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 3345687888887777777 6777788888887632 236678888777
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00052 Score=68.62 Aligned_cols=125 Identities=13% Similarity=0.138 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCch
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~ 251 (614)
...+|+..+...++++.|..+|+++.+.+...+-.++..+...++..+|++++++.....+-|...+..-...+.+.++.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34556666777788999999999998877777777888888888888898888887755333444444444455666666
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
+.|..+.+.+.+. .+.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666653 23334466666666666666666666666665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.001 Score=72.02 Aligned_cols=159 Identities=9% Similarity=0.079 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
++..+-.|.....+.|..++|..+++.. .. ..||. .....+...+.+.+++++|....+.... .-+-+......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~-~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGI-HQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHH-Hh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 4667777778888889999999998876 33 67776 4455667778888899999888888864 33335677778
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-MKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+..++.+.|++++|.++|++.- -.|+ ..+|.++-.++ ...|+.++|...|+++.+.... -...|+.++ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l-~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL-TRRGALWRARDVLQAGLDAIGD-GARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH------HH
Confidence 8888888999999999888872 2343 67788888888 8888999999999888877544 344444332 23
Q ss_pred hhhHHHHHHHHHhCC
Q 038206 460 WNDVGLVRKLMTDKG 474 (614)
Q Consensus 460 ~~~a~~~~~~m~~~g 474 (614)
...-...++++.-.+
T Consensus 232 ~~~~~~~~~~~~~~~ 246 (694)
T PRK15179 232 LNADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHHHcCccc
Confidence 333444555554333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0018 Score=70.89 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=143.9
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHH-HHHcCCCCchHHHHH-----
Q 038206 51 QIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIR-ACARSVDAKPQAIVL----- 121 (614)
Q Consensus 51 ~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~-~~~~~~~~~~~A~~~----- 121 (614)
+.+.+..-...+|.+ . ..+-.|+..|.. +++++|.++.+.-.. |+...+-.+.. .+.+. ++..++..+
T Consensus 16 e~~~r~~~~~~~p~n-~-~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv~~l~~ 92 (906)
T PRK14720 16 EKWTRADANNYSLSK-F-KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSR-RPLNDSNLLNLIDS 92 (906)
T ss_pred hhhhhcccccCCcch-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhh-cchhhhhhhhhhhh
Confidence 344444444556455 6 788888888866 888888888875443 44433322222 33333 444444333
Q ss_pred -------------HHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 038206 122 -------------FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188 (614)
Q Consensus 122 -------------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 188 (614)
...|...+ -+...+..+..+|-+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 22222221 233566677777778888888888888888877 55777888888888888 8888
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCC
Q 038206 189 ANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHS 268 (614)
Q Consensus 189 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g 268 (614)
|.+++.+.. .-|...+++.++.+++.++....+-|..-|..++ +.+.... |
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~----------------~ki~~~~--~ 218 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIE----------------RKVLGHR--E 218 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHH----------------HHHHhhh--c
Confidence 888876543 3377777888888888888765222222222222 2222221 2
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFA 315 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~ 315 (614)
..--+.++-.|-..|-+..+++++..+|+.+.+ .|.....-++.+|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344566677888888999999999998763 46666777777775
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0007 Score=67.71 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
...+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++. ... .+-|......-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~a-L~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEA-LKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHhcC
Confidence 34455666667788999999999998776666677888888888888999999887 322 2223344444455577889
Q ss_pred CHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038206 355 MVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNMPMKP 406 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 406 (614)
+.+.|..+.+.+.+ ..| +..+|..|..+|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999988864 445 56689999999999999999999999887654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.066 Score=54.14 Aligned_cols=394 Identities=14% Similarity=0.110 Sum_probs=214.7
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 63 QQHKTLLIYSRIIHFASFADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 63 ~~~~~~~~~~~li~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
|.| . ..|+.||.-+....+++++..++++.. | ....|..-|..-... ++++....+|.+.+..- .+..-|.
T Consensus 17 P~d-i-~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~s-kdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 17 PYD-I-DSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELAS-KDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred Ccc-H-HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 466 7 899999998887889999999999876 4 456788899998888 99999999999988764 5666666
Q ss_pred HHHHHHHc-cCCcHHH----HHHHHH-HHHhCCCCc-hhHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C---
Q 038206 140 FALKACAY-LFAFSQG----KQAHAH-IFKRGLVSD-VYINNSLIHF---------YASCGHLDLANKVFDNMLE-R--- 199 (614)
Q Consensus 140 ~ll~~~~~-~~~~~~a----~~~~~~-~~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~f~~m~~-~--- 199 (614)
.-|.-..+ .++.... .+.|+. +.+.|+++- -.+|+..+.. |....+++..++++.++.. |
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 66654432 2333332 233332 334565443 2346665553 3444567778888887733 2
Q ss_pred ------ChhHHHHHHHHHH-------hcCChhHHHHHHHHhhhc---------cCCChhhHH---------HHHHHHHhh
Q 038206 200 ------SLVSWNVMIDAFV-------QFGEFDSALKLFRRMQIL---------FEPDGYTFQ---------SITSACAGL 248 (614)
Q Consensus 200 ------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~~---------~~pd~~t~~---------~ll~a~~~~ 248 (614)
|-..|..=|+... +...+..|.+++++...- ..|...|-. ..|.- -+.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-Eks 249 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKS 249 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-Hhc
Confidence 1122221111110 112234444444444221 111111111 11110 000
Q ss_pred Cchh---------HHHHHHHHHHHhccCCCCcccc--------------------------------HHHHHHHHHHhc-
Q 038206 249 ATLS---------LGMWAHAYILRHCDHSLVTDVL--------------------------------VNNSLIDMYCKC- 286 (614)
Q Consensus 249 ~~~~---------~~~~~~~~~~~~~~~g~~~~~~--------------------------------~~~~li~~y~~~- 286 (614)
+-+. ...-++++..... +..|++. +|...|++..+.
T Consensus 250 NpL~t~~~~~~~~Rv~yayeQ~ll~l--~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 250 NPLRTLDGTMLTRRVMYAYEQCLLYL--GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000111111100 1112111 111111111110
Q ss_pred -------CC----------HHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHH
Q 038206 287 -------GS----------LDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFV 344 (614)
Q Consensus 287 -------g~----------~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~ 344 (614)
-+ .+.....+++.. ..-..+|-..|..-.+..-...|..+|.+. ++.+..+ +....+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHH
Confidence 00 111112222221 111235666666666777778888888888 7777777 455566
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C--CCC--CHHHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P--MKP--DAVIWRSLLDACC 419 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--~~p--~~~~~~~ll~~~~ 419 (614)
+++.-+ ..++.+-|..+|+.=.+++|- ++.--...++.+...++-..|..+|++. + +.| ....|..+|.--
T Consensus 407 A~mEy~-cskD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE- 482 (656)
T KOG1914|consen 407 ALMEYY-CSKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE- 482 (656)
T ss_pred HHHHHH-hcCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-
Confidence 666544 457788888888876664443 3344457778888888888888888876 1 223 346888888766
Q ss_pred HhcCchHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGG---ICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
..-|++..+.++-++....-+. +....-..+++.|.-.+.+..-..-++.|
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 7888888888888877766551 22234456667776666665544444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.024 Score=55.70 Aligned_cols=176 Identities=9% Similarity=0.048 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF-AFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
++.+-..+... ++.++|+.++.++++.. |+.. +|+.--..+...+ +++++...++.+.+.. +.+..+|+..-.
T Consensus 40 ~~~~ra~l~~~-e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 40 MDYFRAVYASD-ERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 33444445555 77788888888887766 4443 3444434444555 5677788877777765 334445665544
Q ss_pred HHHhcCCH--HHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh---Cc
Q 038206 179 FYASCGHL--DLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL---AT 250 (614)
Q Consensus 179 ~~~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~---~~ 250 (614)
++.+.|+. +++..+++.+.+ +|..+|+-....+.+.|+++++++.++++.+.-.-|...|+.....+.+. +.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 45555542 566777766633 46677887777777888888888888888765344444555444433333 11
Q ss_pred h----hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 251 L----SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 251 ~----~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
. +........+++. .+-|...|+-+...+..
T Consensus 195 ~~~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 195 LEAMRDSELKYTIDAILA----NPRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhc
Confidence 1 2233333333332 23455666666666655
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=65.92 Aligned_cols=245 Identities=13% Similarity=0.080 Sum_probs=168.1
Q ss_pred HHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCH
Q 038206 210 AFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 210 ~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 289 (614)
-+.++|+..+|.-.|+...+.-+-+...|.-+-..-+..++-..|...+....+. -+.+..+.-+|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L----dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL----DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc----CCccHHHHHHHHHHHhhhhhH
Confidence 3567888888888888776654445667777777777777777788777777764 233466777778888888888
Q ss_pred HHHHHHHhcCC--CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 290 DIARQVFESMP--KR----------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 290 ~~A~~~~~~m~--~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
..|.+.++.-. .| +...-+. ..+.......+..++|-++-...+..+|......|--.|.-.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 88888887642 11 1000000 1122222344666777777456663344444445555578889999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
+|.+-|+..+. ++| |...||.|...++...+.++|+.-|.+. .++|+. .++..|--+| ...|.+++|.+.|-.
T Consensus 448 raiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~-mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC-MNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh-hhhhhHHHHHHHHHH
Confidence 99999999974 456 7889999999999999999999999887 778874 4566666677 999999999999988
Q ss_pred HHHhcCC---------CCchhHHHHHHHHhhcCChhhHH
Q 038206 435 VIESEGG---------ICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 435 ~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
++.+..+ ++...|..|=.++.-.++.|.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 8876433 12235555555555555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.025 Score=56.49 Aligned_cols=114 Identities=17% Similarity=0.156 Sum_probs=58.0
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~ 289 (614)
+...|++++|+..++.+....+-|..-.......+...++..+|.+.++.+... .|+ ....-.+.++|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCCh
Confidence 445666666666666655443333333334444445555555555555555442 222 34444455555555555
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 290 DIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 290 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
.+|.++++... ..|...|..|..+|...|+..++..-..+
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555555443 12445555555555555555555444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00075 Score=57.31 Aligned_cols=95 Identities=9% Similarity=-0.042 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
....-.+...+...|++++|.++|+-. .+.|. ..-|..|-..| ...|++++|+..|.++..++|+ |+.++-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 444456666778899999999999987 45564 45556665555 9999999999999999999999 99999999999
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988665
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.7e-05 Score=45.72 Aligned_cols=29 Identities=38% Similarity=0.670 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
+||+||++|++.|++++|.++|++| .+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M-~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEM-RERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHH-hHCc
Confidence 6777777777777777777777777 6555
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.015 Score=64.07 Aligned_cols=166 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQ 213 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 213 (614)
+...+..|+..+...+++++|.++.+...+.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 44556667777767777777777777555432 11122222222255555554444433 22233333
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 293 (614)
..++.-+..+...|.. ..-+...+-.+..+|.+.|..+++..+++.+++. . +.|+.+.|.+...|+.. ++++|.
T Consensus 96 ~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 96 NLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 3333222222223322 2223335555566666667777777777777765 2 45566777777777777 777777
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 294 QVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 294 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.++.+. +.-|...+++.++.++|.++
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHH
Confidence 666543 22355555666666666665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0023 Score=55.10 Aligned_cols=123 Identities=12% Similarity=0.156 Sum_probs=88.1
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc-c---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc--hhHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK-H---TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSD--VYIN 173 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~ 173 (614)
.|..++..+. . ++...+...++.+.... |+. . ..-.+...+...|++++|...|+.+......++ ....
T Consensus 14 ~y~~~~~~~~-~-~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQALQ-A-GDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-C-CCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 4555666664 5 78888888888888876 444 2 222334567788999999999999888763333 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 174 NSLIHFYASCGHLDLANKVFDNMLER--SLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 174 ~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
-.|...+...|++++|+..++....+ ....+......|.+.|++++|...|++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55777888899999999999876443 3345666778889999999999888753
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.7e-05 Score=45.02 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
++||++|++|++. |++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~-~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKM-GQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHcc-chHHHHHHHHHHHhHCc
Confidence 4788888888888 88888888888887766
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=56.21 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
......+...+...|++++|.+.|+.. ...| +...|..+...+ ...|+++.|...+++..+.+|. +...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACC-QMLKEYEEAIDAYALAAALDPD-DPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 344556666677777777777777765 3334 445555555555 6777777777777777777776 67777777777
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|++++|...++...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777888888777776655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.094 Score=53.03 Aligned_cols=105 Identities=12% Similarity=0.051 Sum_probs=67.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA-VIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~~~~ 424 (614)
-..+-+.|++..|...+.+++++ -+-|...|..-.-+|.+.|.+..|++=.+.. ...|+. ..|.-=..++ ....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al-~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL-RAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHH
Confidence 34456678888888888888763 2447788888888888888888887654443 334442 2333333333 44567
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
++.|.+.|.+.++.+|. +......+.+++.
T Consensus 442 ydkAleay~eale~dp~-~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 442 YDKALEAYQEALELDPS-NAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHhcCch-hHHHHHHHHHHHH
Confidence 88888888888888776 4444444444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.028 Score=60.76 Aligned_cols=342 Identities=12% Similarity=0.035 Sum_probs=166.9
Q ss_pred CCchHHHHHHHHHHHcCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPD-KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
.+...|+..|-+..+.. |+ ...|..+...|....|...|.+.|....+.+ ..|.....+..+.|++..+++.|..
T Consensus 472 K~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHH
Confidence 34556666666555544 22 3467777777777777778888888776654 3456667788888888888888887
Q ss_pred HHhhcCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhcc
Q 038206 192 VFDNMLERSL-----VSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCD 266 (614)
Q Consensus 192 ~f~~m~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 266 (614)
+.-...+.+. ..|--.--.|...++..+|+.-|+...+.-+-|...|..+..+|...|....+.++|..+...
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 7433322211 122222233444555555555555544433334445555555555555555555555444432
Q ss_pred CCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCCCC----------CHHHHHHHHHHHHhcCCHH--------------
Q 038206 267 HSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMPKR----------DLTSWNSIILGFALHGRAE-------------- 321 (614)
Q Consensus 267 ~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~-------------- 321 (614)
.|+ ...---...+-+..|.+.+|...+..+... -..++-.+...+.-.|-..
T Consensus 626 ---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 626 ---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred ---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 221 111111222333445555554444433210 0111111111122222222
Q ss_pred ------------------HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH---H---HHHHHHHHHHHhcCCCCChh
Q 038206 322 ------------------AALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV---S---EGRDYFDVMINEYNITPVLE 377 (614)
Q Consensus 322 ------------------~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~---~---~a~~~~~~~~~~~~~~p~~~ 377 (614)
.|..+|-.. + .. .|+......+..-.-..+.. + .|.+.+-.-. .+..+..
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~ 776 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMY 776 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccc
Confidence 222333322 1 00 22221111111111111111 1 1111111111 1111122
Q ss_pred HHHHHHHHHHH----cC----CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 378 HYGCLVDLLAR----AG----NIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 378 ~~~~li~~~~~----~g----~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
+|..|+.-|.+ +| +...|..-++.. ... -+..+|+.|-- . ...|++.-+...|-+....+|. +..+|
T Consensus 777 ~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGV-l-sg~gnva~aQHCfIks~~sep~-~~~~W 853 (1238)
T KOG1127|consen 777 PWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGV-L-SGIGNVACAQHCFIKSRFSEPT-CHCQW 853 (1238)
T ss_pred hHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHH-h-hccchhhhhhhhhhhhhhcccc-chhhe
Confidence 23333332222 11 223455555443 222 35666766543 3 5557888888888888888888 78888
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 448 VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+.-.|.+..+++.|...|.+.+.
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhh
Confidence 8888888888888888888877654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.016 Score=63.00 Aligned_cols=127 Identities=10% Similarity=0.032 Sum_probs=81.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
++..+-.|.....+.|.+++|..+++...+..+-+.........++.+.+.+++|....+..... -+.+....+.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG----GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc----CCCCHHHHHHH
Confidence 46677778888888888888888888876543333445555666666666777766666666653 23334455555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
..++.+.|++++|..+|++...+ +..+|..+-..+-..|+.++|...|++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666532 2455666666666666666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.24 Score=53.39 Aligned_cols=386 Identities=16% Similarity=0.139 Sum_probs=221.2
Q ss_pred HHHHHHHHHHhc---CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASF---ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~---g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
..|...+.++.. |+.++|..+++.... -|..|...+-..|... ++.++|..+|++..+.. |+..-...+.
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~~---P~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDL-GKLDEAVHLYERANQKY---PSEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhC---CcHHHHHHHH
Confidence 457777777766 999999988887654 4778888888899999 99999999999998876 8877788888
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHhhcCCCC-h-hH---HHHH
Q 038206 143 KACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH----------LDLANKVFDNMLERS-L-VS---WNVM 207 (614)
Q Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~~-~-~~---~~~l 207 (614)
.++.+.+++.+-.++--++-+ .++.+++.+=++++.+...-. +.-|.+.++.+.+.+ . .+ ...-
T Consensus 118 mayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 889888888776666555555 345566666667776655422 334666777765443 1 11 1112
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
...+-..|++++|++++..=... ..-+...-+--+.-....+.+.+..++-..+... |... |...++.+.+
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Dd----y~~~~~sv~k 269 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDD----YKIYTDSVFK 269 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcc----hHHHHHHHHH
Confidence 23344578899999998544433 4445555556677777888888888888777775 4321 4444444333
Q ss_pred c----------------CCHHHHHHHHhcCC---CCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 286 C----------------GSLDIARQVFESMP---KRDLTSWNSIILGF---ALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 286 ~----------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
+ +.++...+..++.. .+++ |-+-+..+ -.-|+.++++-.|- +.-|-+|- |
T Consensus 270 lLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp--~LA~lel~kr~~~~gd~ee~~~~y~---~kfg~kpc---c 341 (932)
T KOG2053|consen 270 LLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGP--YLARLELDKRYKLIGDSEEMLSYYF---KKFGDKPC---C 341 (932)
T ss_pred HHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCc--HHHHHHHHHHhcccCChHHHHHHHH---HHhCCCcH---h
Confidence 2 22333222222221 1222 22223333 34477777655443 23333331 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChh-------HHHHHHHHHHHcCCH-----HHHHHHHHhC------C--
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLE-------HYGCLVDLLARAGNI-----DEALHLVSNM------P-- 403 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~-----~~A~~~~~~m------~-- 403 (614)
..=+..|...=..++-..+..... +..++.. -+.+.+....-.|.+ +.-..++.+. +
T Consensus 342 ~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 342 AIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred HhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 111222222222233333333221 1111111 122222222223321 1112222111 1
Q ss_pred ----CCCC---------HHHHHHHHHHHHHhcCchH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 404 ----MKPD---------AVIWRSLLDACCKKHASVV---LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 404 ----~~p~---------~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
.-|. ..+-+.|+..| ++.++.. +|+-+++......+. |..+=..|+++|+-.|-+..|.+++
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~-rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y 496 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLW-RKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELY 496 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHH
Confidence 1122 12456777888 8777654 455555555556666 6666678899999999999999999
Q ss_pred HHHHhCCCccCC
Q 038206 468 KLMTDKGVTKEP 479 (614)
Q Consensus 468 ~~m~~~g~~~~~ 479 (614)
+.+.-+++..+.
T Consensus 497 ~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 497 KTLDIKNIQTDT 508 (932)
T ss_pred HhcchHHhhhcc
Confidence 888777776554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.088 Score=48.47 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh----ccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN----HRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~----~~g~ 355 (614)
...|++.|++++|++..+....-..... =+..+.+..+.+-|.+.+++| +.- -+..|.+-|..++. ..+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al--~VqI~lk~~r~d~A~~~lk~m-q~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAAL--NVQILLKMHRFDLAEKELKKM-QQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHH--HHHHHHHHHHHHHHHHHHHHH-Hcc---chHHHHHHHHHHHHHHhccchh
Confidence 4456777777777777766332222222 233445566677777777777 331 23355554555443 2345
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+..|.-+|++|.+ ..+|+..+.+....+....|++++|..++++. ....+..+...++..-....++.+--.+...
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6666666666643 45666666666666666666666666666655 1112333333333332133334444445555
Q ss_pred HHHHhcCC
Q 038206 434 QVIESEGG 441 (614)
Q Consensus 434 ~~~~~~~~ 441 (614)
++....|.
T Consensus 267 QLk~~~p~ 274 (299)
T KOG3081|consen 267 QLKLSHPE 274 (299)
T ss_pred HHHhcCCc
Confidence 55554444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.044 Score=50.39 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR-DLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
+..+.|..+.+-|.+.++.|.+- +-.|.+.|..++.+ .+...+|.-+|++| .....|+..+.+....++...|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~--s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL--SEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH--hcccCCChHHHccHHHHHHHhc
Confidence 44455667778888888888754 33455555555543 34678888888888 4447788888888888888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID 393 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (614)
++++|..+++....+ -..++.+...+|-.-...|...
T Consensus 222 ~~eeAe~lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 222 RYEEAESLLEEALDK--DAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred CHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCCh
Confidence 888888888888763 3334555545554444455443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.17 Score=51.31 Aligned_cols=128 Identities=11% Similarity=0.199 Sum_probs=84.9
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
|+.+|+.||.-+-. ...+++.+.++++...- + -....|..-+..-...++++..+.+|.+.+..-+. ...|...
T Consensus 19 di~sw~~lire~qt--~~~~~~R~~YEq~~~~F-P-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lY 92 (656)
T KOG1914|consen 19 DIDSWSQLIREAQT--QPIDKVRETYEQLVNVF-P-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLY 92 (656)
T ss_pred cHHHHHHHHHHHcc--CCHHHHHHHHHHHhccC-C-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHH
Confidence 88999999987654 58899999999998754 1 34567888888888999999999999999876554 5556655
Q ss_pred HHHHHh-cCCHHHHH----HHHhh------cCCCChhHHHHHHH---------HHHhcCChhHHHHHHHHhhhc
Q 038206 177 IHFYAS-CGHLDLAN----KVFDN------MLERSLVSWNVMID---------AFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 177 i~~~~~-~g~~~~A~----~~f~~------m~~~~~~~~~~li~---------~~~~~g~~~~A~~~~~~m~~~ 230 (614)
++.--+ .|+...+. +.|+- |.-..-..|+..|. -|..+.+.+...++|+++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 553322 23333322 12221 11123345666553 345555677777788887643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0041 Score=60.11 Aligned_cols=132 Identities=16% Similarity=0.192 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLV 383 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 383 (614)
.+|..++...-+.+..+.|..+|.+. ...+ ...+.....+++. +...++.+.|..+|+...+. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 47888899999999999999999998 5332 3333333334443 34457788899999999874 556778889999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 384 DLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.+.|+.+.|..+|++. ..-|.. ..|...+.-= .+.|+++...++.+++.+.-+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999987 223333 5999999877 9999999999999999998766
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0041 Score=52.79 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=64.7
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQ 213 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 213 (614)
....+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+|+.... .+...|..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445555666777777777777776654 33566667777777777777777777776532 244566666777777
Q ss_pred cCChhHHHHHHHHhhhccCCChhh
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYT 237 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t 237 (614)
.|++++|+..|++..+. .|+...
T Consensus 98 ~g~~~~A~~~~~~al~~-~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEI-CGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHh-ccccch
Confidence 78888888777766543 344433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.061 Score=49.11 Aligned_cols=165 Identities=11% Similarity=0.224 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK--R---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
+|..++-+...+|+.+.|...++.+.. | -+.-..+| -+-..|++++|+++++.. .... +.|.+++.-=+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~l-L~dd-pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESL-LEDD-PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHH-hccC-cchhHHHHHHHHH
Confidence 344455556667888888888877652 2 12222222 134578999999999988 4443 5566777655555
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHh--cCch
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKK--HASV 425 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--~~~~ 425 (614)
.-..|+--+|++-+....+ .+..|...|.-|.+.|...|++++|.--++++ -+.|- ...+..+-..++.. ..+.
T Consensus 130 lka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 5556666677777777766 66778999999999999999999999999988 34453 33444444433222 2467
Q ss_pred HHHHHHHHHHHHhcCCCCchh
Q 038206 426 VLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+.+.+.|.+.++..+. +...
T Consensus 208 ~~arkyy~~alkl~~~-~~ra 227 (289)
T KOG3060|consen 208 ELARKYYERALKLNPK-NLRA 227 (289)
T ss_pred HHHHHHHHHHHHhChH-hHHH
Confidence 8899999999998875 4443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.04 Score=56.62 Aligned_cols=238 Identities=15% Similarity=0.149 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHH---------HHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHH--HHHHHHHhCCC
Q 038206 99 FTWNTLIRACARSVDAKPQAIVL---------FQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQ--AHAHIFKRGLV 167 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~---------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~ 167 (614)
+.+.+-+-.|... |.+++|..+ ++.+.... .+.-.++..=++|.+..+..--+- -++++.++|-.
T Consensus 557 vp~~~~m~q~Iea-g~f~ea~~iaclgVv~~DW~~LA~~A---LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 557 VPQSAPMYQYIER-GLFKEAYQIACLGVTDTDWRELAMEA---LEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccchhhhhc-cchhhhhcccccceecchHHHHHHHH---HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 3344444555666 666666543 12221111 233345555566666555544332 34466777866
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
|+... +...++-.|++.+|-++|.+ +|....|+++|..|+-- -...-+..
T Consensus 633 P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF---------D~aQE~~~ 682 (1081)
T KOG1538|consen 633 PNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF---------DYAQEFLG 682 (1081)
T ss_pred chHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH---------HHHHHHhh
Confidence 77643 34556668899999998854 56666777777766421 11112223
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYF 327 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (614)
.|..++-+.+...-... ..++.--.+-..++...|+.++|..+. ..+|-.+-++++-
T Consensus 683 ~g~~~eKKmL~RKRA~W-----Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADW-----ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIA 739 (1081)
T ss_pred cCChHHHHHHHHHHHHH-----hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHH
Confidence 33333333222211111 111111123445566677777775543 3455555566665
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Q 038206 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP-MKP 406 (614)
Q Consensus 328 ~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 406 (614)
+++ . ..+..+...+..-+.+...+..|-++|..|-. ...++++....+++.+|..+-++.| ..|
T Consensus 740 rkl-d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~ 804 (1081)
T KOG1538|consen 740 RKL-D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKD 804 (1081)
T ss_pred hhc-c----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccc
Confidence 554 2 22334455555555666777778888877721 2357788888888888888888875 345
Q ss_pred CH
Q 038206 407 DA 408 (614)
Q Consensus 407 ~~ 408 (614)
|+
T Consensus 805 dV 806 (1081)
T KOG1538|consen 805 DV 806 (1081)
T ss_pred cc
Confidence 54
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0079 Score=51.78 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=22.2
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
...|+++.|+..++...... ..+..+..+.++|.+.|++++|...|+
T Consensus 96 ~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 96 LQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555554321111 123344455555555555555555554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=49.18 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+...|++++|...+++. ...|+ ...+..+...+ ...++++.|.+.+++..+..+. +..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445666677778888888887765 33343 35555566666 7778888888888888887777 66677788888888
Q ss_pred cCChhhHHHHHHHHHh
Q 038206 457 ARRWNDVGLVRKLMTD 472 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~ 472 (614)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888876654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.008 Score=49.50 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=46.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDAC 418 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~ 418 (614)
.+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444555555555555555543211111 1223444555555555555555555554 11222 23344444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|+.+.|...++++.+..|+
T Consensus 87 -~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 87 -QELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred -HHhCChHHHHHHHHHHHHHCcC
Confidence 5556666666666666666555
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=49.34 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC--------CcHHHHHHHHHHHHhCCCCchhH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF--------AFSQGKQAHAHIFKRGLVSDVYI 172 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 172 (614)
-...|..+... +++.....+|+.+++.|+..|+..+|+.+|.+.++.. .+-..+.+++.|+..+++|+..+
T Consensus 28 ~i~~I~~~~~~-~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFEN-EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhh-cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 34566677777 9999999999999999993399999999999887653 24456788999999999999999
Q ss_pred HHHHHHHHHh
Q 038206 173 NNSLIHFYAS 182 (614)
Q Consensus 173 ~~~li~~~~~ 182 (614)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00077 Score=51.81 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=24.1
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
+..++ .+.|++++|..++++ .+.++. +......+..+|.+.|++++|.++++
T Consensus 31 la~~~-~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCY-FQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHH-HHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 33333 555555555555555 333333 23333344555555555555555554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0052 Score=54.83 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=69.3
Q ss_pred HHHHHhcC--CCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC----------
Q 038206 292 ARQVFESM--PKRDLTSWNSIILGFAL-----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG---------- 354 (614)
Q Consensus 292 A~~~~~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g---------- 354 (614)
-...|+.. ..+|-.+|..++..|.+ .|..+=....+..| .+-|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 34556655 46788888888888865 46777778888888 89999999999999998876532
Q ss_pred ------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 355 ------MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 355 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
+.+-|+++++.|. ++|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 2345666666663 35666666666666666665443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0084 Score=49.37 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC--CchhHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI--CSGVYVL 449 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 449 (614)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+ ...|+++.|...++.+....|.. ....+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY-YAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35667788899999999999999887 22343 34566677777 89999999999999999987762 2456778
Q ss_pred HHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 450 LSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+..++.+.|++++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8899999999999999999988763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0093 Score=47.09 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHhcCCCCCh
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRG--------MVSEGRDYFDVMINEYNITPVL 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~ 376 (614)
|-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.++.. ++-+...+++.|.. .+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcH
Confidence 4445566666779999999999999 89999 899999999998876543 24456777888876 4888888
Q ss_pred hHHHHHHHHHHH
Q 038206 377 EHYGCLVDLLAR 388 (614)
Q Consensus 377 ~~~~~li~~~~~ 388 (614)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 888888877754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.002 Score=49.46 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHH
Q 038206 317 HGRAEAALKYFDRLVVEESF-SPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 394 (614)
.|+++.|+.+++++ ..... .|+...+..+..++.+.|++++|..+++.. + ..| +....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~-~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKL-LELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHH-HHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHH-HHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 35555666666555 22211 122333333455555555555555555541 1 111 12222233555555555555
Q ss_pred HHHHHH
Q 038206 395 ALHLVS 400 (614)
Q Consensus 395 A~~~~~ 400 (614)
|++.++
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.037 Score=50.65 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=121.9
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC----------CChhhHHHHHHHHHcCCCCchHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN----------PNSFTWNTLIRACARSVDAKPQA 118 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~----------~~~~~~~~li~~~~~~~~~~~~A 118 (614)
+-+|+.+.+.- ++ + +++|+..|.- .-+++-...|+.-.. +-...-+.++..+.-. +.+.-.
T Consensus 125 R~lhAe~~~~l---gn-p---qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~-kEy~iS 196 (366)
T KOG2796|consen 125 RILHAELQQYL---GN-P---QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGM-KEYVLS 196 (366)
T ss_pred HHHHHHHHHhc---CC-c---HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcc-hhhhhh
Confidence 67777776542 33 3 6777777765 444444455543322 1223345566666667 888888
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH-----HHHHhcCCHHHHHHHH
Q 038206 119 IVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI-----HFYASCGHLDLANKVF 193 (614)
Q Consensus 119 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~f 193 (614)
+..+++.++...+ .++.-...+.+...+.||.+.|...++...+..-..|....+.++ ..|.-..++..|...|
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8999999987755 677777888888889999999999999887754444444444443 4566677888999999
Q ss_pred hhcCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHH
Q 038206 194 DNMLER---SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240 (614)
Q Consensus 194 ~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ 240 (614)
++++.. |.+.-|.-.-+..-.|+..+|++....|... .|...+-.+
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-~P~~~l~es 324 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-DPRHYLHES 324 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-CCccchhhh
Confidence 888664 4555555555555578999999999998765 444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.016 Score=58.53 Aligned_cols=77 Identities=12% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 102 NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 102 ~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
.++|+.|... |..++++++++.=...|+. ||.+|++.||+.+.+.|++..|.++...|...+...+..++..-+..+
T Consensus 107 ha~vR~~l~~-~~~~~~l~~L~n~~~yGiF-~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 107 HALVRQCLEL-GAEDELLELLKNRLQYGIF-PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHhc-CCHHHHHHHHhChhhcccC-CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 3455555555 5555555555555555555 555555555555555555555555555554444444444443333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.098 Score=47.82 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=106.8
Q ss_pred CCHHHHHHHHhcCCC--------CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH-HHhccCCH
Q 038206 287 GSLDIARQVFESMPK--------RDL-TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS-ACNHRGMV 356 (614)
Q Consensus 287 g~~~~A~~~~~~m~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~-a~~~~g~~ 356 (614)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++ ... . |.+.-...+=. -+-..|+.
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L-~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQL-RDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHH-HHh-C-CCChhHHHHHHHHHHHhhch
Confidence 456677777666541 222 23444455556677777777777776 332 2 44422221111 13345777
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|.++++.+.++ -+.|..++-.=+.+.-..|+--+|++-+.+. .+-.|...|.-+-.-| ..-|+++.|.-.+++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY-~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIY-LSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHH-HhHhHHHHHHHHHHH
Confidence 7777777777653 2445566665555565666666666655544 3345777777777777 777777777777777
Q ss_pred HHHhcCCCCchhHHHHHHHHhhcC---ChhhHHHHHHHHHh
Q 038206 435 VIESEGGICSGVYVLLSRVYASAR---RWNDVGLVRKLMTD 472 (614)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~ 472 (614)
++=..|. ++..+..+...+.-.| +.+-+.+.+.+..+
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777777 6666666766665444 34455566655544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.013 Score=45.31 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
|..+...+...|++++|...+++. ... .|+ ...+..+...+...+++++|.+.++...+ -.+.+...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKA-LEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHH-Hhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHH
Confidence 334444555555555555555554 221 122 23333444444455555555555554433 112222344444444
Q ss_pred HHHcCCHHHHHHHHHh
Q 038206 386 LARAGNIDEALHLVSN 401 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~ 401 (614)
+...|+.++|...+..
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4445555555444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=45.37 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC-ChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR-RWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 472 (614)
+..+|..+-..+ ...|++++|+..|++.++.+|. ++..|..+..+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~-~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIY-FQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456777787787 8889999999999999999988 8889999999999999 79999998887654
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.017 Score=51.46 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
..+..+...|...|++++|...|++. ...|+ ...|..+...+ ...|+++.|...++++++..|. +...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIY-ASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34555555666666666666666654 11221 24555555555 6677777777777777777766 566666666
Q ss_pred HHHhhcCC
Q 038206 452 RVYASARR 459 (614)
Q Consensus 452 ~~~~~~g~ 459 (614)
.+|...|+
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 66666555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.052 Score=48.27 Aligned_cols=131 Identities=14% Similarity=0.111 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
....+..+...+...|++++|...|++. ......++ ...+..+...+.+.|++++|...+....+. .+-+...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEA-LKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 3445666666677777777777777766 43322222 245555666667777777777777766542 122344555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 381 CLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
.+...|...|+...+..-++. + ...++.|.+++++..+.+|+ + |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~---------------A----~~~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDE---------------A----EALFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHH---------------H----HHHHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 555666666655544432211 0 12356777888888777766 3 5455555554444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=55.31 Aligned_cols=128 Identities=16% Similarity=0.244 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH-HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
.+|-.++...-+. +..+.|..+|.+.++.+. .+...|...... +...++.+.|..+|+..++. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~-~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRT-EGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHh-CChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 4577777777777 778888888888875431 233333333333 23346677788888888776 466777788888
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 178 HFYASCGHLDLANKVFDNMLER------SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+.+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887543 2347888888888888888888888877654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.02 Score=57.82 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKR--GLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE----RSLVSWNVM 207 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~l 207 (614)
+......+++.+....+++.+..++-..... ....-..|..++|..|.+.|..+.++.+++.=.. ||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334444444444444444444444444332 1111223334555555555555555555443221 344555555
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGL 248 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~ 248 (614)
|..+.+.|++..|.++...|... ...+..|+...+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 55555555555555555444443 344444444444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.62 Score=45.73 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG 354 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g 354 (614)
+.+..|.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++.. . .- ..+.|-.++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s-kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S-KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C-CC--CCCChHHHHHHHHHCC
Confidence 444556667788999999999999999999999999999999999988776542 1 12 2378889999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDAC 418 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 418 (614)
...+|..+...+ + +..-+.+|.++|++.+|.+.--+.+ |......+...|
T Consensus 252 ~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 252 NKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred CHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 999998887653 1 2457889999999999988765543 666666666555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=59.05 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=82.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|.+.|..+++. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+| ...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~-~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC-MKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhCC
Confidence 34566789999999999999752 3336778888899999999999999999887 4556 566777777777 89999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
++.|+..|+++++.+|. +......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~-~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPG-DSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 99999999999999998 76665554333
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.022 Score=50.51 Aligned_cols=94 Identities=11% Similarity=-0.111 Sum_probs=70.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (614)
....|..+...+...|++++|...|++. ...|+ ..+|..+-..+ ...|+.++|+..++++.+..|. ...++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~-~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH-TSNGEHTKALEYYFQALERNPF-LPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 3455667777778888999998888876 23332 34677777777 8889999999999999988877 6677777
Q ss_pred HHHHHh-------hcCChhhHHHHHHHH
Q 038206 450 LSRVYA-------SARRWNDVGLVRKLM 470 (614)
Q Consensus 450 l~~~~~-------~~g~~~~a~~~~~~m 470 (614)
+..+|. +.|++++|...+++-
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 777777 778888776666543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.41 Score=46.47 Aligned_cols=184 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 185 HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
++++|..+|++ ....|-..|++++|.+.|.+.... +.+.++...+-.
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~--------------~~~~~~~~~Aa~-------- 76 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADC--------------YEKLGDKFEAAK-------- 76 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHH--------------HHHTT-HHHHHH--------
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHH--------------HHHcCCHHHHHH--------
Confidence 56666666543 456677778888888877776422 112222222211
Q ss_pred ccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 265 CDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 265 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
.|.....+|.+. ++++|...+++ -+..|...|++..|-+.+.++
T Consensus 77 ----------~~~~Aa~~~k~~-~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~l-------------- 120 (282)
T PF14938_consen 77 ----------AYEEAANCYKKG-DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKEL-------------- 120 (282)
T ss_dssp ----------HHHHHHHHHHHT-THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHH--------------
T ss_pred ----------HHHHHHHHHHhh-CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHH--------------
Confidence 222223333333 55555554433 345666666666666555544
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCC---C-----CCCHHH-
Q 038206 345 GVLSACNHR-GMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNMP---M-----KPDAVI- 410 (614)
Q Consensus 345 ~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~~- 410 (614)
...|-.. |++++|.+.|+....-+.-... ..++..+...+.+.|++++|.++|++.. . +.++..
T Consensus 121 --A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 121 --AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp --HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred --HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2334444 6666666666665432211111 3345567777888888888888887751 1 112221
Q ss_pred -HHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 411 -WRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 411 -~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.++| .+ ...||...|.+.+++..+..|.
T Consensus 199 ~l~a~l-~~-L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 199 FLKAIL-CH-LAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHH-HH-HHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHH-HH-HHcCCHHHHHHHHHHHHhhCCC
Confidence 22222 22 4567888888888888777654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0058 Score=44.11 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=37.4
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|+++.|...|+++++..|. +...+..+..++...|++++|...+++..+
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667777777777777777777 777777777777777777777777776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.004 Score=45.43 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=44.1
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|+++.|.+.++++.+..|. +...+..+..+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4568889999999999999888 8888888999999999999999998876543
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=55.57 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=80.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA 389 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (614)
...+...|++++|+++|++. .. ..|+ ...|..+..++...|++++|...++.+++. -+.+...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~A-l~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQA-ID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 45567789999999999988 44 3444 466777778899999999999999999752 233677888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 390 GNIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 390 g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
|++++|...|++. .+.|+.......+..|
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999887 5567666555555555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.8 Score=44.42 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC-----CccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHh-cCCCCC--h
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESF-----SPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINE-YNITPV--L 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~--~ 376 (614)
++..+...+.+.|++++|.++|++. ..... +++.. .|...+-++...|++..|...++..... .++..+ .
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~-~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEV-AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 4455667788889999999999887 43322 22221 2223333556678888888888887432 122222 3
Q ss_pred hHHHHHHHHHHH--cCCHHHHHHHHHhCCCCCCHH
Q 038206 377 EHYGCLVDLLAR--AGNIDEALHLVSNMPMKPDAV 409 (614)
Q Consensus 377 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~ 409 (614)
.....|++++-. ...+++|..-|+.+. +.|..
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 345566666654 345777888887775 34443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=53.76 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 408 AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 408 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|.++--.. ...|++++|...+++++++++. ...|..+...|...|+.++|...+++...
T Consensus 420 ~~~~~ala~~~-~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQA-LVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455443333 4456677777777777666653 45666677777777777777766666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.019 Score=51.36 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHcc----------------CCcHHHH
Q 038206 96 PNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL----------------FAFSQGK 155 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~ 155 (614)
+|-.+|..+|..|.+. +|..+=....++.|.+-|+. -|..+|+.||+.+=+. .+-+-|.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444444444444322 13333333444445555544 4555555555443221 2345578
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
+++++|...|+-||..++..|++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 889999999999999999999988876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.9 Score=47.66 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
-|++++|.+++-++..+|. .|..+.+.|++-.+.++++.--.. -.--...|..+-..++....++.|.+.+.+
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677777777777766653 344555566666555555432111 111123444444555555555555544433
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
-.. ....+++|.+..++++-+.+-..+++ |....-.|...+.+.|..++|.+.|-+- + .|-
T Consensus 822 ~~~------------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~----s-~pk- 882 (1189)
T KOG2041|consen 822 CGD------------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR----S-LPK- 882 (1189)
T ss_pred ccc------------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc----c-CcH-
Confidence 211 11234444444444444444444432 2333444556666666666666666332 1 121
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHH--------------HHHHHHHHHcCCHHHHHHHHHhC
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHY--------------GCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m 402 (614)
..+.+|.+..++.+|.++-+... -|.+.+. ---|..+.++|+.-+|-+++.+|
T Consensus 883 ----aAv~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 883 ----AAVHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 23455566666655555443221 1111111 11345566777766666666666
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.075 Score=47.03 Aligned_cols=80 Identities=8% Similarity=-0.104 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD--KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
..|..+...+... |++++|+..|++....... |. ..++..+...+...|+.++|.+.++...+.. +.....++.+
T Consensus 36 ~~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSE-GEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3455555556666 7777777777777655311 11 2355556666666677777777666666542 2223334444
Q ss_pred HHHHH
Q 038206 177 IHFYA 181 (614)
Q Consensus 177 i~~~~ 181 (614)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.8 Score=45.99 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhc
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNH 352 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~ 352 (614)
-.+.+--+.-+..-|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+ + + ..-|..+..+|.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk-k-----s-PIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK-K-----S-PIGYLPFVEACLK 756 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc-C-----C-CCCchhHHHHHHh
Confidence 3344555566677899999999999999999999988899999999998887777655 2 1 3567778999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
.|+.++|..++.... |.. -.+.+|.++|++.+|.++--+
T Consensus 757 ~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHHHH
Confidence 999999999886551 221 467889999999998876533
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=41.91 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=40.5
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLL 415 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 415 (614)
..|++++|.++|+.+... .+-+...+..+..+|.+.|++++|.++++++ ...|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 457777777777777653 2235666667777777888888888877777 3456655555544
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.9 Score=45.94 Aligned_cols=126 Identities=10% Similarity=0.039 Sum_probs=85.0
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038206 325 KYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPM 404 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (614)
.+.+.+..+.|......|.+--+.-+...|+..+|.++-... . -||...|-.=+.+++..+++++-+++-+.+.
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 334444223344455556666666777788888887766544 2 3677777777888888888888887777654
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHH
Q 038206 405 KPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 405 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
.+.-|.-++.+| .+.|+.++|.+.+.+.-. +.-...+|.+.|++.+|.+.--
T Consensus 743 --sPIGy~PFVe~c-~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 --SPIGYLPFVEAC-LKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --CCCCchhHHHHH-HhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 245566777888 888888888877654311 1156778888888888877653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.066 Score=44.38 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=33.3
Q ss_pred hcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 333 EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 333 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.....|+..+..+++.+|+..+++..|.++.+...+.++++-+...|..|+.-
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455666666666666666666666666666666666665556666555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.3 Score=43.56 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCK 420 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 420 (614)
.+.+..+.-|...|....|.++-. ++++ |+...|-..+.+|+..+++++-.++... +..++-|..++.+| .
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~-~ 248 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEAC-L 248 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHH-H
Confidence 344444555555666655555433 3343 5666666677777777777666665543 22345666666666 6
Q ss_pred hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 421 KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
..|+..+|..+..+ .++..-+.+|.++|.|.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 66666666665554 11234456666777777666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.41 Score=47.45 Aligned_cols=72 Identities=17% Similarity=0.129 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCC---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 278 SLIDMYCKCGSLDIARQVFESMPKR---D----LTSWNSIILGFAL---HGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.++-.|-...+++...++.+.+... + ...--...-++.+ .|+.++|++++..+ ......++..||..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~-l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPV-LESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHH-HhccCCCChHHHHHHH
Confidence 4445677777888888888777643 1 1122223345555 77888888888774 3444555666665555
Q ss_pred HHH
Q 038206 348 SAC 350 (614)
Q Consensus 348 ~a~ 350 (614)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.4 Score=43.18 Aligned_cols=303 Identities=16% Similarity=0.095 Sum_probs=169.2
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcC-CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH--ccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARS-VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA--YLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~ 157 (614)
..+..+.+.|..-.. -.-|.+|-.++... .|+-..|.+.-.+-.+. +. -|......+|.+-. -.|+.+.|++-
T Consensus 67 ~sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-ls-sDqepLIhlLeAQaal~eG~~~~Ar~k 142 (531)
T COG3898 67 ESPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LS-SDQEPLIHLLEAQAALLEGDYEDARKK 142 (531)
T ss_pred hCcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hh-ccchHHHHHHHHHHHHhcCchHHHHHH
Confidence 345556666654332 22455555555433 15666666555444322 12 56667777776653 46899999999
Q ss_pred HHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc--
Q 038206 158 HAHIFKRGLVSDVYI--NNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-- 230 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 230 (614)
|+.|.. .|.... ...|.----+.|+-+.|...-+.... | -.-.|.+.+...+..|+|+.|+++.+.-+..
T Consensus 143 feAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v 219 (531)
T COG3898 143 FEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV 219 (531)
T ss_pred HHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 999865 222211 11122222356888888887776532 2 2347788899999999999999999887766
Q ss_pred cCCChhh--HHHHHHHHHh---hCchhHHHHHHHHHHHhccCCCCccccHH-HHHHHHHHhcCCHHHHHHHHhcCC--CC
Q 038206 231 FEPDGYT--FQSITSACAG---LATLSLGMWAHAYILRHCDHSLVTDVLVN-NSLIDMYCKCGSLDIARQVFESMP--KR 302 (614)
Q Consensus 231 ~~pd~~t--~~~ll~a~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~m~--~~ 302 (614)
+.+|..- -..++.+-.. ..+...++..-.+.. .+.||..-- -.-...+.+.|++.++-.+++.+- +|
T Consensus 220 ie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-----KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 220 IEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN-----KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred hchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 6666542 2233333221 123333443333333 334443222 222456777888888877777765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
....|. .|.+..-.+.++.-+++......++||. .+...+..+-...|++..|..--+... ...|....|..
T Consensus 295 HP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lL 367 (531)
T COG3898 295 HPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLL 367 (531)
T ss_pred ChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHH
Confidence 443332 2333333334444444442334456654 445556666666777776666555442 44566666666
Q ss_pred HHHHHHHc-CCHHHHHHHHHhC
Q 038206 382 LVDLLARA-GNIDEALHLVSNM 402 (614)
Q Consensus 382 li~~~~~~-g~~~~A~~~~~~m 402 (614)
|.+.-... |+-.++...+-+.
T Consensus 368 lAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHH
Confidence 66655433 6666666665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.17 Score=43.25 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=17.6
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhc
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFES 298 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (614)
.|+..+-.+..+|.+.|+.+.|.+.|+.
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566666666666776666666654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.029 Score=40.34 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+...+.+.|++++|.+.|++. ...| +...|..+-..+ ...|++++|...|+++++..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRIL-YQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcC
Confidence 345667777788888777776 4445 344555555555 7778888888888888777766
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=53.54 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=81.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCch
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASV 425 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~ 425 (614)
-..+.+++++|.+.|...++ +.| |.+.|..=..+|.+.|.++.|.+=.+.. .+.|. ..+|..|-.+| ...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~-~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY-LALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCcH
Confidence 35678999999999999874 455 6777777888999999999998876655 66665 56899999999 888999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
++|.+.|++.++++|. +......|-.+--+.+
T Consensus 166 ~~A~~aykKaLeldP~-Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPD-NESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHhhhccCCC-cHHHHHHHHHHHHHhc
Confidence 9999999999999988 6644444443333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=42.18 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+ ...++++.|.++++++++.+|. ++..+.....+|.+.|++++|.+.++...+.
T Consensus 4 ~~-~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IY-LQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HH-HhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44 6677888888888888888888 7777888888888888888888888776643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.54 Score=44.31 Aligned_cols=175 Identities=13% Similarity=0.074 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChh-hH---HHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSF-TW---NTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~-~~---~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
..|..-...+.+|++++|.+.|+.+.. |+.. .- -.+..++.+. +++++|...|++..+.....|+ ..+...+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~ 111 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPN-IDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCc-hHHHHHH
Confidence 556666666666999999999988865 4332 11 2244677788 9999999999999887733222 2344444
Q ss_pred HHHHc--c---------------CCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 038206 143 KACAY--L---------------FAFS---QGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLV 202 (614)
Q Consensus 143 ~~~~~--~---------------~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~ 202 (614)
.+.+. . .|.. .|.+.++.+++ -|=...-..+|..-+..+...=..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHHHH
Confidence 44331 0 1111 22233333333 232223334444333333211111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAY 260 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~ 260 (614)
.--.+..-|.+.|.+..|+.-|+.+.+. .+........+..++...|..+++......
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 1113445578888888888888888766 233333444555555555555555544433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.086 Score=43.67 Aligned_cols=79 Identities=20% Similarity=0.313 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHH--------------HHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVM--------------INEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--- 402 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 402 (614)
..++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++.+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555554432 111233444555555555555555555555444433
Q ss_pred -CCCCCHHHHHHHHHHH
Q 038206 403 -PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 403 -~~~p~~~~~~~ll~~~ 418 (614)
++.-+..+|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 3333344454444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=41.82 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHh
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPD--KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSLIHFYAS 182 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~ 182 (614)
++-.. |+.++|+.+|++....|.. .. ...+..+-..+...|++++|..+++........+ +..+...+.-++..
T Consensus 10 a~d~~-G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 10 AHDSL-GREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHhc-CCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44455 8888888888888887744 22 2345556667777888888888888777653221 11222223335566
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038206 183 CGHLDLANKVFDNMLERSLVSWNVMIDAFV 212 (614)
Q Consensus 183 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 212 (614)
.|+.++|.+.+-....++...|.--|..|+
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777877777776554444445555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=48.50 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=78.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcC
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAG 390 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 390 (614)
-+.+.+++.+|+..|.+. .. +.|+. +-|..=..+|++.|.++.|++--+..+ .+.| ....|..|-.+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~A-I~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEA-IE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHH-Hh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 456789999999999987 44 55544 666677788999999999988777665 4555 3678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038206 391 NIDEALHLVSNM-PMKPDAVIWRSLLDAC 418 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 418 (614)
++++|.+.|++. .+.|+-.+|..=|...
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999998886 7888877776655554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.28 Score=40.24 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLA 387 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 387 (614)
-.++-..|+.++|+.+|++. ...|..... ..+..+-+++...|++++|..+++....++.-.+ +......+...+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~A-l~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRA-LAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888887 666665542 4555666777788888888888887765422111 2222223444666
Q ss_pred HcCCHHHHHHHHHh
Q 038206 388 RAGNIDEALHLVSN 401 (614)
Q Consensus 388 ~~g~~~~A~~~~~~ 401 (614)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888887776643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.67 Score=48.92 Aligned_cols=142 Identities=15% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCCCChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHcc---C-----CcHHHHHHHH
Q 038206 93 IENPNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACAYL---F-----AFSQGKQAHA 159 (614)
Q Consensus 93 m~~~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~---~-----~~~~a~~~~~ 159 (614)
.+..|...|...+.+.... .+....|.++|++..+.. |+- ..|..+.-++... . ++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3346788899998875442 123678999999999987 664 3444333322211 1 1222333333
Q ss_pred HHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 160 HIFKR-GLVSDVYINNSLIHFYASCGHLDLANKVFDNM--LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 160 ~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
..... ....+..+|.++.-.+...|++++|...|++. .+++..+|..+...+...|+.++|.+.|++.... .|...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL-RPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCc
Confidence 33222 13345567777777777789999999999987 3467778888999999999999999999887654 44444
Q ss_pred hH
Q 038206 237 TF 238 (614)
Q Consensus 237 t~ 238 (614)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.052 Score=39.58 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhcC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHA-SVVLSEEVAKQVIESEG 440 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~ 440 (614)
...|..+...+.+.|++++|+..|++. ...| +...|..+-.++ ...| ++++|++.+++.++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAY-MKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHcCc
Confidence 456677777778888888888877765 3345 445666666666 7777 68888888888887765
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.8 Score=41.90 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCCh---hhHHHHHHHHHcCCCCchHHHHHHHHH
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNS---FTWNTLIRACARSVDAKPQAIVLFQRM 125 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~~~~~~~A~~~~~~m 125 (614)
.++.+.+... |.| + ..|=.||..|.. |..++-++++++|..|-+ .+|..-|++=... .++.....+|.+.
T Consensus 29 lrLRerIkdN---Ptn-I-~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~-~df~svE~lf~rC 102 (660)
T COG5107 29 LRLRERIKDN---PTN-I-LSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR-KDFRSVESLFGRC 102 (660)
T ss_pred HHHHHHhhcC---chh-H-HHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh-hhHHHHHHHHHHH
Confidence 4555555443 366 8 999999999999 999999999999998654 4688888876666 8999999999999
Q ss_pred HHcCCCCCCcchHHHHHHHHHccC
Q 038206 126 IEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 126 ~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
.... .+...|..-|.-..+.+
T Consensus 103 L~k~---l~ldLW~lYl~YIRr~n 123 (660)
T COG5107 103 LKKS---LNLDLWMLYLEYIRRVN 123 (660)
T ss_pred Hhhh---ccHhHHHHHHHHHHhhC
Confidence 8865 55566666665554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.087 Score=45.22 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=72.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-MKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
..--+-..|++++|..+|.-+- ..| |..-|..|-..+ ...++++.|...|......+++ |+.++......|...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3334457899999999998872 233 444566665555 8899999999999999999988 89999999999999999
Q ss_pred hhhHHHHHHHHHh
Q 038206 460 WNDVGLVRKLMTD 472 (614)
Q Consensus 460 ~~~a~~~~~~m~~ 472 (614)
.+.|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.37 Score=45.60 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=84.0
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 373 TPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKH--ASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+-|...|-.|...|.+.|+.+.|..-|.+. .+. +|...+..+-.++.... ....++..++++++..+|. |..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 347889999999999999999999999876 333 35556666666653333 3457899999999999999 999999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
.|...+...|++.+|...|+.|.+..-
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.38 Score=41.28 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
...++..+...|+++.|..+.+.+. .| |...|..+|.+|...|+..+|++.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344555555566666655555544 22 4455555556666666655555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.67 Score=37.94 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-.|..++..++..+. .. ..+..-++.++--....-+-+-..++++.+-+-+.+. .||++..
T Consensus 13 ildG~V~qGveii~k~-v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKT-VN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHH-HH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHhchHHHHHHHHHHH-cC---cCCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 3457777777777665 22 1233445555544444444455555555543222221 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...-+-.++ .+..-...-+... ...|.-+.-.+++..+.+. -++++....-+..+|.+.|...++.+++++.=++|
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~l-v~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDIL-VKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHH-HHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHH-HHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333333332 2333445556677 8888889999999988763 34478889999999999999999999999999988
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.75 Score=47.79 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=96.8
Q ss_pred hHHHHHHHHHcCCCCc--hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 100 TWNTLIRACARSVDAK--PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~--~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
.++..-.+|.+- ++. -+.+.-+++|.++|.. |+... +...|+-.|.+.+|-++|.+ .|.+ |..+
T Consensus 600 ~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~rge~-P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAl 665 (1081)
T KOG1538|consen 600 DFETARKAYIRV-RDLRYLELISELEERKKRGET-PNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRAL 665 (1081)
T ss_pred hhHHHHHHHHHH-hccHHHHHHHHHHHHHhcCCC-chHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHH
Confidence 344455566554 333 2344456777788876 77643 33456777888888888753 4544 4566
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC-------ChhHH-------HHHHHHHHhcCChhHHHHHHHH-----hhh----c-cCC
Q 038206 178 HFYASCGHLDLANKVFDNMLER-------SLVSW-------NVMIDAFVQFGEFDSALKLFRR-----MQI----L-FEP 233 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~-------~~~~~-------~~li~~~~~~g~~~~A~~~~~~-----m~~----~-~~p 233 (614)
.+|.....++.|.++...-... ....| .+....+..+|+.++|..+.-+ |.- . -..
T Consensus 666 EmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ 745 (1081)
T KOG1538|consen 666 EMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA 745 (1081)
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh
Confidence 7777777777777776433110 11111 1233344556666666654322 111 1 223
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK 301 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~ 301 (614)
+..+...+..-+.+...+..|-++|..+-.. .+++++....+++++|..+-++.++
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------------HHHhhheeecccchHhHhhhhhCcc
Confidence 3334444444444555566666666554332 3566667777777777777776664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.14 Score=48.72 Aligned_cols=56 Identities=5% Similarity=-0.092 Sum_probs=25.2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICS---GVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+...+ ...|+++.|...|+.+.+..|+ ++ ..+..++.+|...|++++|.++++...
T Consensus 186 LG~~y-~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 186 LGQLN-YNKGKKDDAAYYFASVVKNYPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHHCCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344 4445555555555555544443 21 222223444445555555555554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.33 E-value=5.9 Score=44.73 Aligned_cols=97 Identities=23% Similarity=0.286 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH--HHHHHHHHHhcc
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI--TFVGVLSACNHR 353 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~--t~~~ll~a~~~~ 353 (614)
|+--.-+|.++|+.++|.+ +|...|+|++|+.+-.+| .. .-|.. +--.|..-+...
T Consensus 955 ~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql-~~---~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQL-SE---GKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred ccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhh-cC---CHHHHHHHHHHHHHHHHHc
Confidence 3344556778888888855 455689999999999877 21 11222 224567777888
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
++.-+|-++..+... .| .--+..|++...+++|.++.....
T Consensus 1013 ~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888877766543 22 235567788888899988776553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.6 Score=37.10 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=53.3
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCC
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 216 (614)
....++..+...+.......+++.+.+.+ ..+...+|.++..|++.+ .+...+.++. ..+.......+..|-+.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34556666666667777777777777766 356667788888887653 3344444442 2233444456666666666
Q ss_pred hhHHHHHHHHh
Q 038206 217 FDSALKLFRRM 227 (614)
Q Consensus 217 ~~~A~~~~~~m 227 (614)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666655
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.019 Score=35.01 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 432 AKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
|++.++.+|+ ++.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6788999999 9999999999999999999986
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.34 Score=45.86 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI-TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
|...|-.|-..|.+.|+.+.|..-|.+..+..|-.|+.. .|...+..-+....-.++.++|+++.+ .-+-++.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHHH
Confidence 445555555555555555555555555423333333331 122222222222334455555555543 22224444445
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLD 416 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 416 (614)
|...+...|++.+|...|+.| ..-|....|..+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 555555556666666555555 22333334444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.21 Score=46.42 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC---------
Q 038206 291 IARQVFESMP--KRDLTSWNSIILGFALH-----GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG--------- 354 (614)
Q Consensus 291 ~A~~~~~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g--------- 354 (614)
..++.|.... ++|-.+|-+++..|... +..+-....++.| ++.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3456777776 77888999998888654 5677777888899 99999999999999999886643
Q ss_pred -------CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHH-HHHHHHHhC
Q 038206 355 -------MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNID-EALHLVSNM 402 (614)
Q Consensus 355 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 402 (614)
+-+-+..+++.|. .+|+.||..+-..|++++++.|..- +..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345788999994 5899999999999999999988643 333443334
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1 Score=44.30 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH---HHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVM---INEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-------PM-KPDA 408 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 408 (614)
..|..|-..|.-.|+++.|+..++.- .+++|-.. ....++.|..++.-.|+++.|.+.++.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34555555566667777777766532 23344332 2345666777777778888777777653 21 1244
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh----cCC-CCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIES----EGG-ICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.+..+|-+.| ....+++.|+..+.+-+.. +-. -....+.+|.++|...|..++|+.+.+.-
T Consensus 276 QscYSLgNty-tll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTY-TLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5566677777 6667777777776654322 111 02466778888888888888887766544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.4 Score=37.14 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=94.6
Q ss_pred CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhCC------CCCCH
Q 038206 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNI-TPVLEHYGCLVDLLARAGNIDEALHLVSNMP------MKPDA 408 (614)
Q Consensus 336 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~p~~ 408 (614)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....++..+|...++.+. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 456666666788888899999999999988865 54 4467777778888888899999988888761 22443
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
--.+-..+ ...|....|+..|+.....-|.|.... ....++.+.|+.+++..-+..+.+
T Consensus 163 --~Ll~aR~l-aa~g~~a~Aesafe~a~~~ypg~~ar~--~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 --HLLFARTL-AAQGKYADAESAFEVAISYYPGPQARI--YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred --hHHHHHHH-HhcCCchhHHHHHHHHHHhCCCHHHHH--HHHHHHHHhcchhHHHHHHHHHHH
Confidence 33345566 777899999999999998877754444 445667888888877765555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.49 Score=45.03 Aligned_cols=98 Identities=15% Similarity=0.163 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKP-DAVIWRSLLD 416 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~ 416 (614)
|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333445667777777766665432111 1234556667777777777777777665 2111 1233433444
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+ ...|+.+.|..+++++++..|+
T Consensus 226 ~~-~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IM-QDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HH-HHcCCHHHHHHHHHHHHHHCcC
Confidence 45 6677888888888888887777
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.1 Score=44.23 Aligned_cols=152 Identities=7% Similarity=0.018 Sum_probs=91.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHH--HHhccCCHHHHHHHHHHHHHhcCCCCChhHH-----------
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLS--ACNHRGMVSEGRDYFDVMINEYNITPVLEHY----------- 379 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----------- 379 (614)
++...|+.++|.+.-...++..... .+..+++ ++...++.+.+...|+..+ ...|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n----~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATN----AEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccch----hHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4556677777776665551221111 1222222 2334566777777776653 334432211
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 380 --GCLVDLLARAGNIDEALHLVSNM-PMK-----PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 380 --~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.-=.+...+.|++.+|.+.+.+. .+. |+...|...-... .+.|+..+|+.-.++..++++. -...|..-.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~-~rLgrl~eaisdc~~Al~iD~s-yikall~ra 328 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVN-IRLGRLREAISDCNEALKIDSS-YIKALLRRA 328 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhh-cccCCchhhhhhhhhhhhcCHH-HHHHHHHHH
Confidence 11123345678888888888776 333 4555666666666 7778888888888888887766 445555566
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 038206 452 RVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+++...++|++|.+-+++..+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6777788888888888776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=38.00 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 384 DLLARAGNIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..|.+.+++++|.++++.+ ...|+ ...|...-..+ ...|+++.|.+.+++..+..|+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCL-FQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHH-HHhccHHHHHHHHHHHHHHCCC
Confidence 4567777888888777776 44454 33444444444 7778888888888888877776
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=2.7 Score=36.87 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=52.8
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-----SLVSWNVM 207 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~l 207 (614)
|+...-..+..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+- +..+--.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5555555566666666666666666666655444555555555555555566666666666554221 22233344
Q ss_pred HHHHHhcCChhHHHHHHHHhh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~ 228 (614)
...|...|.+.+|..-|+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHH
Confidence 455555555555555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.6 Score=38.20 Aligned_cols=227 Identities=12% Similarity=0.029 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH-HhhCc--hhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC-AGLAT--LSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~-~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
.|+.=+.++++....++|..-++....--.||-+ |...=..+ .+.|. .-..+.+|..+.+. .| .-+++|
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~-----lg--npqesL 142 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY-----LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHh-----cC--CcHHHH
Confidence 4666666777777777776655544332122210 00000000 01111 12234455555543 11 236777
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK--RDL--------TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA 349 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a 349 (614)
...|.-...+++-...|+.=.. ..+ ..-+.++..+.-.|.+.-.+.++++. .+...+-+......|.+.
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHHHHHHHH
Confidence 7777666556665555554332 222 23455666666677777888888887 665445566667777777
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCCCC-C-CHHHHH--HHHHHHHH
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYG-----CLVDLLARAGNIDEALHLVSNMPMK-P-DAVIWR--SLLDACCK 420 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~--~ll~~~~~ 420 (614)
-.+.|+.+.|..+|+...+..+ ..+....+ .....|.-++++.+|...+.+++.. | |....| +|+. .
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl---l 297 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL---L 297 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH---H
Confidence 7888888888888887755322 22222222 2333444566777888888777432 2 222222 2322 3
Q ss_pred hcCchHHHHHHHHHHHHhcCCC
Q 038206 421 KHASVVLSEEVAKQVIESEGGI 442 (614)
Q Consensus 421 ~~~~~~~a~~~~~~~~~~~~~~ 442 (614)
..|+...|.+..+.+++..|.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 4577778888888888877763
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=3.9 Score=38.55 Aligned_cols=51 Identities=12% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 399 (614)
-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.++.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34555555555555555555433222 2333444555555555555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.18 Score=43.32 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH-----hCCCccCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT-----DKGVTKEP 479 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~ 479 (614)
....++..+ ...|+++.|...+++++...|- +...|..++.+|...|+..+|.++++++. +.|+.|++
T Consensus 64 ~~~~l~~~~-~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEAL-LEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHH-HhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 444556666 7788889999999999998888 88888899999999999999988887763 34666643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.9 Score=37.35 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDL 385 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 385 (614)
+..++.-|-......+|...+..+ ... .-..- ..+..-|.+.|.+..|..-++.+++++.-.+. ......++..
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l-~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAEL-RNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHH-HHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHH-HHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 344555555555555555544444 210 00011 12344566677777777777777665332221 2334556666
Q ss_pred HHHcCCHHHH
Q 038206 386 LARAGNIDEA 395 (614)
Q Consensus 386 ~~~~g~~~~A 395 (614)
|.+.|..+.|
T Consensus 188 y~~l~~~~~a 197 (203)
T PF13525_consen 188 YYKLGLKQAA 197 (203)
T ss_dssp HHHTT-HHHH
T ss_pred HHHhCChHHH
Confidence 6666666543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.12 Score=38.81 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=6.9
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 038206 381 CLVDLLARAGNIDEALHLV 399 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~ 399 (614)
.+...|...|++++|++.|
T Consensus 10 ~la~~~~~~~~~~~A~~~~ 28 (78)
T PF13424_consen 10 NLARVYRELGRYDEALDYY 28 (78)
T ss_dssp HHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3333333334333333333
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.27 Score=49.47 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVL 449 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (614)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+-.+| ...|++++|+..++++++.... .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcay-a~LGr~dEAla~LrrALelsn~----~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCH-AYREEGKKAADCLRTALRDYNL----KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcch----hHHH
Confidence 5677888899999999999999999884 667764 3588888888 8889999999999999887311 2221
Q ss_pred HHH--HHhhcCChhhHHHHHHHHHhCCCc
Q 038206 450 LSR--VYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 450 l~~--~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+.. .+.......+..++++....-|..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111 112233445777778777777764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.92 E-value=7.1 Score=38.50 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=132.0
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCC-----CCCHH--HHHHHHHHHHh--
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMP-----KRDLT--SWNSIILGFAL-- 316 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~-----~~~~~--~~~~li~~~~~-- 316 (614)
+.|+.+.+.+.-+.... .-|. ...+.+++...+..|+++.|+++.+.-. ++|+. .--.|+.+-+.
T Consensus 166 r~GareaAr~yAe~Aa~-----~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 166 RLGAREAARHYAERAAE-----KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred hcccHHHHHHHHHHHHh-----hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 45555555555544443 2333 5577888889999999999999988544 44442 22333333221
Q ss_pred -cCCHHHHHHHHHHHhhhcCCCccHHHHH-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 317 -HGRAEAALKYFDRLVVEESFSPNSITFV-GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 317 -~g~~~~A~~l~~~m~~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-+...|...-. +...+.||.+.-. ....++.+.|++.++-.+++.+= .-.|.+..+. .-.+.+.|+...
T Consensus 241 ldadp~~Ar~~A~---~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~--lY~~ar~gdta~ 312 (531)
T COG3898 241 LDADPASARDDAL---EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIAL--LYVRARSGDTAL 312 (531)
T ss_pred hcCChHHHHHHHH---HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHH--HHHHhcCCCcHH
Confidence 234555555544 3345677764432 34457889999999999999984 4456665543 333456665322
Q ss_pred H--HH--HHHhCCCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh-cCChhhHHHHHH
Q 038206 395 A--LH--LVSNMPMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS-ARRWNDVGLVRK 468 (614)
Q Consensus 395 A--~~--~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~ 468 (614)
. .+ -+. .++| +..+--.+..+. ...|++..|..-.+......|. ...|..|.++-.. .|+-.++...+-
T Consensus 313 dRlkRa~~L~--slk~nnaes~~~va~aA-lda~e~~~ARa~Aeaa~r~~pr--es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 313 DRLKRAKKLE--SLKPNNAESSLAVAEAA-LDAGEFSAARAKAEAAAREAPR--ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHH--hcCccchHHHHHHHHHH-HhccchHHHHHHHHHHhhhCch--hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 1 11 122 3445 455566666666 7889999999888888887776 7788888887654 599999888886
Q ss_pred HHHh
Q 038206 469 LMTD 472 (614)
Q Consensus 469 ~m~~ 472 (614)
+-.+
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 6544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.16 Score=33.07 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
+|..+-.++ ...|++++|+++++++++..|+ |+..+..|.
T Consensus 3 ~~~~la~~~-~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAY-RRLGQPDEAERLLRRALALDPD-DPEAWRALA 42 (44)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcC-CHHHHHHhh
Confidence 566677777 8888888888888888888888 777666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.77 E-value=5.3 Score=36.49 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 359 (614)
+..-|.+.|.+..|..-++.+...-.-.| .......++.++.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34557777777777777777733211111 124445666677777766643
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.4 Score=43.70 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
.+...++|+++.|.++-++.. +...|..|-....+.|+.+-|.+.|.+. .. |..|+-.|.-.|+.+.-
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHH
Confidence 456677899999988877665 6668999999889999999999888766 22 45555566777887777
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 360 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
.++.+....+ | -++.-..++.-.|+.++..+++.+.+
T Consensus 393 ~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 393 SKLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 6666655432 2 13444555556677777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.3 Score=36.98 Aligned_cols=135 Identities=9% Similarity=0.037 Sum_probs=91.2
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc--CChhHHHHHHhcCCC
Q 038206 18 HSIFNNNRNEGSFNNHSSLLSSLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF--ADLDYAFRVFYQIEN 95 (614)
Q Consensus 18 l~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~--g~~~~A~~~f~~m~~ 95 (614)
++.++.+.+.|+.|+...+..++..+...+..-+++..+.-.-++ ++ . .+...|++.-.. .-..-|.+.+.++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~-DS-k-~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIP-DS-K-PLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccC-Cc-H-HHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 566777778899999999999999998888877777654444344 55 4 566666554433 234455566655542
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG 165 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 165 (614)
.+..++..+... |++-+|+++.+.... .+......++.+..+.+|...--.++....+.+
T Consensus 91 ----~~~~iievLL~~-g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 ----AYEEIIEVLLSK-GQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hHHHHHHHHHhC-CCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 466778888888 999999988876533 233345667777777777666666666555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.21 Score=37.39 Aligned_cols=62 Identities=5% Similarity=-0.015 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh----cCC-CC-chhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIES----EGG-IC-SGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+++.+-..+ ...|++++|+..+++.++. ++. |+ ..++..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVY-RELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHH-HHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567777777 9999999999999999865 222 11 4567789999999999999999998754
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.92 E-value=16 Score=39.52 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
.++-..|..+.- |++++|-...-.|...+..-|...+..++.. ++......+ +.... ++.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~-~~l~~Ia~~---lPt~~-~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAEL-DQLTDIAPY---LPTGP-PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccc-cccchhhcc---CCCCC-cccCchHHHHHHHHHHH
Confidence 456666666655 7788887777777777777777777777776 555433322 22221 11345567777776655
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
......++...+ .+++.+.-...+++- ..=+++-.+ +...-..|+..|...+++..|+.++-..
T Consensus 468 ----~~~~~F~e~i~~--Wp~~Lys~l~iisa~---------~~q~~q~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 ----SDVKGFLELIKE--WPGHLYSVLTIISAT---------EPQIKQNSE-STALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----HHHHHHHHHHHh--CChhhhhhhHHHhhc---------chHHHhhcc-chhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222223333222 122222222222111 111111111 1122233778888888888888888777
Q ss_pred hh
Q 038206 228 QI 229 (614)
Q Consensus 228 ~~ 229 (614)
+.
T Consensus 532 k~ 533 (846)
T KOG2066|consen 532 QD 533 (846)
T ss_pred cC
Confidence 53
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.84 E-value=15 Score=39.08 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=91.0
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD----KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
|.+++|.+++-.|.++|.. |..+.+- |++-...++++. |....| ...|..+..-++....+++|.+
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~kl-gDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKL-GDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhh-hhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887763 4555555 777666665532 211011 2356666677777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 157 AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 157 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
++..--. ...++.+|.+..++++-..+-..+++ |....-.|...+...|.-++|.+.|-+-- .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p--- 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS---LP--- 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc---
Confidence 7654321 12355666666666666665555554 34455566677777777777777665432 11
Q ss_pred hHHHHHHHHHhhCchhHHHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAH 258 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~ 258 (614)
...+.+|..++++.+|.++-
T Consensus 882 --kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 23456666666666665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.95 Score=44.51 Aligned_cols=258 Identities=14% Similarity=0.142 Sum_probs=151.0
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHH--H--hCCC-CchhHHHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH----TFPFALKACAYLFAFSQGKQAHAHIF--K--RGLV-SDVYINNSLI 177 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~g~~-~~~~~~~~li 177 (614)
-+++. |+.+..+.+|+..++.|-. |.. .|..|-++|.-.+++++|.++|..=+ . .|-+ -.......|-
T Consensus 26 RLck~-gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 26 RLCKM-GDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHhc-cchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 47888 9999999999999998833 433 46666778888899999998876422 1 1100 0111222233
Q ss_pred HHHHhcCCHHHHHHHHhh-c------CCC--ChhHHHHHHHHHHhcCC--------------------hhHHHHHHHHhh
Q 038206 178 HFYASCGHLDLANKVFDN-M------LER--SLVSWNVMIDAFVQFGE--------------------FDSALKLFRRMQ 228 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~-m------~~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 228 (614)
+.+--.|.+++|.-.-.+ + -.+ ....+-.+...|...|+ ++.|.++|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 333444556655433211 1 111 12234445555555443 234445554332
Q ss_pred hc------cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhc-cCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 229 IL------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC-DHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 229 ~~------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
+. --.-...|..+-+.+.-+|+++.+...|+.-.... +.|-.. ....+..|.++|.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 21 11122334444455556678888888877644321 112221 24567778888888999999988887532
Q ss_pred -------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHh---hh-cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 038206 301 -------KRD--LTSWNSIILGFALHGRAEAALKYFDRLV---VE-ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMI 367 (614)
Q Consensus 301 -------~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 367 (614)
.+. ..+.-+|-..|.-..++++|+.++.+-. ++ ....-....+.+|-.++...|.-++|..+.+.-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 333 3355567777777788888888876531 11 1122334678888889988898888887665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.72 Score=42.98 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=66.6
Q ss_pred hhHHHHHHhcCC--CCChhhHHHHHHHHHcC----CCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC-------
Q 038206 83 LDYAFRVFYQIE--NPNSFTWNTLIRACARS----VDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF------- 149 (614)
Q Consensus 83 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~----~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~------- 149 (614)
+-.-++.|...+ ++|-.+|-+++..|... ++..+=....++.|.+-|+. -|..+|+.||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHH
Confidence 344456676666 57777887777776543 14455555667888888888 78888888887664422
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 150 ---------AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 150 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
.-+-+..++++|...|+.||..+--.|++++++.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 122345667777777777777776667766665554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=5 Score=40.95 Aligned_cols=180 Identities=16% Similarity=0.123 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC
Q 038206 70 IYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF 149 (614)
Q Consensus 70 ~~~~li~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 149 (614)
+-|+++..|..|-+....+.++.| ..-++|.-+..+ ....-...+-.+|..-| -+...|-.+++.|...
T Consensus 44 ~k~si~~lyisg~~~~s~~~l~d~------~l~~~~~~f~~n-~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en- 112 (711)
T COG1747 44 SKNSIIALYISGIISLSKQLLDDS------CLVTLLTIFGDN-HKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN- 112 (711)
T ss_pred hhhhhHHHHHHHHHHhhhccccch------HHHHHHHHhccc-hHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-
Confidence 456777777766555555554433 355678888888 77777888889999888 6788899999999887
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC------C---hhHHHHHHHHHHhcCChhHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER------S---LVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~---~~~~~~li~~~~~~g~~~~A 220 (614)
..+.-..+|+.+++..+. |+....-|...|-+ ++.+.+...|.....+ + ...|.-++..- ..+.+..
T Consensus 113 ~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~f 188 (711)
T COG1747 113 GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFF 188 (711)
T ss_pred CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHH
Confidence 566777888888887654 55555667776665 8888888888765221 1 12566665532 2456666
Q ss_pred HHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 221 LKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 221 ~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
+.+..+++.. ..--.+.+.-+-.-|....++.++.++...+.+.
T Consensus 189 l~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 189 LRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 6666666554 3334445555556677777888888888777765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=1 Score=45.46 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL----EHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
+...++.+-.+|.+.|++++|...|+..++ +.|+. ..|..+..+|.+.|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 347788888999999999999999999864 45653 35889999999999999999999876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.22 E-value=6.4 Score=33.29 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA-GNIDEALHLVSNMPMKPDAVIWRSLLDAC 418 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 418 (614)
...++..|.+.+.++++.-++..+.. +...++.+... ++++.|.+++.+-. +...|..++..+
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~ 135 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 33455555555555555555544411 11222333333 55666666665422 445566555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.02 E-value=18 Score=37.97 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhcCChhHHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNS-LIHFYASCGHLDLANKVFDNMLER-------SLVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~ 221 (614)
+.+.+.+++..+.+. -|+...|.- --..+...|++++|.+.|+..... ....+--+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444455555555443 223222221 223344455555555555543210 1122223333444455555555
Q ss_pred HHHHHhhhc
Q 038206 222 KLFRRMQIL 230 (614)
Q Consensus 222 ~~~~~m~~~ 230 (614)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.96 E-value=9.8 Score=35.47 Aligned_cols=176 Identities=14% Similarity=0.173 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--C-Chh---hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--P-NSF---TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFAL 142 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~-~~~---~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 142 (614)
.+|+.-+.-+-+|++++|.+.|+.+.. | +.. +--.++-++-+. +++++|+..+++..+.....|| ..|..-|
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~-~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKN-GEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 688888888877999999999988875 2 111 222345567777 8999999999888887644233 3466666
Q ss_pred HHHHcc-------CCcHHHHHHHHHH---HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH-HH-HHHHH
Q 038206 143 KACAYL-------FAFSQGKQAHAHI---FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-WN-VMIDA 210 (614)
Q Consensus 143 ~~~~~~-------~~~~~a~~~~~~~---~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~-~~-~li~~ 210 (614)
.+++.. .|...+++-+..+ ++. .+.+..+- +|..-...+. |... ++ .+..-
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~--------------dA~~~i~~~~--d~LA~~Em~Iary 176 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYAP--------------DAKARIVKLN--DALAGHEMAIARY 176 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcchh--------------hHHHHHHHHH--HHHHHHHHHHHHH
Confidence 655422 2222233332222 221 11111111 1111000000 1111 11 23456
Q ss_pred HHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 211 FVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
|.+.|.+..|..-+++|.+. ..-....+..+..++-..|..+++...-..+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77888888888888888776 122223344455566666666666655554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.94 E-value=8 Score=39.99 Aligned_cols=153 Identities=9% Similarity=-0.013 Sum_probs=85.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKV 192 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 192 (614)
++++++.+..+.=.-.. . .+..-...+++-+-+.|..+.|+++-. |+ ..-.+...++|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~-~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLP-N-IPKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGG-G---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcc-c-CChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHHHHH
Confidence 67777665553111000 0 123446677777777787777776632 22 2234556678888888888
Q ss_pred HhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc
Q 038206 193 FDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD 272 (614)
Q Consensus 193 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 272 (614)
.++.. +...|..|.....+.|+++-|.+.|.+... +..++-.+.-.|+.+.-.++-...... |
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~---~---- 403 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEER---G---- 403 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT---T----
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHc---c----
Confidence 76655 566888888888888888888888887752 444444555555555555554444443 2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhc
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFES 298 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (614)
-+|....++.-.|++++..+++.+
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 244444555555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=4.9 Score=38.69 Aligned_cols=154 Identities=12% Similarity=0.008 Sum_probs=100.1
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
-.|+..+|-..++++.+..+.|...+...-.+|.-.|+.+.-+..++.+...-..+++...++-..+.-++..+|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 35777777777888877777777777777788888888877777777776532223333333334444455689999999
Q ss_pred HHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 293 RQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN---SITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 293 ~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
++.-++..+- |.-+-.+....+-.+|+..++.++..+- ...--..+ ..-|-...-.+...+.++.|.++|+.-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t-ed~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT-EDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc-ccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9998877643 4445555666677789999999888764 22111111 122333333455668899999998754
Q ss_pred H
Q 038206 367 I 367 (614)
Q Consensus 367 ~ 367 (614)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.64 E-value=12 Score=37.53 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHhc-CChhHHHHHHhcCCCC-C--hhh-HH---HHHHHHHc---CCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENP-N--SFT-WN---TLIRACAR---SVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~-~--~~~-~~---~li~~~~~---~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
.|.. .+++...++++.++.+ + ... -+ ...-++-+ . |+.++|++++..+...... ++..||..+.+.+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~~~~~-~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLESDEN-PDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHhccCC-CChHHHHHHHHHH
Confidence 3555 7777888887777652 1 111 11 11123333 4 7777888887775555445 6777777666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.81 E-value=20 Score=36.28 Aligned_cols=384 Identities=11% Similarity=0.084 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHH--HcCCCCchHHHHHHHHHHHc--CCCC----------
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSFTWNTLIRAC--ARSVDAKPQAIVLFQRMIEQ--GNVL---------- 132 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~~~~~~~A~~~~~~m~~~--~~~~---------- 132 (614)
...+.++++|-..+++..........+ |. ..|-.+..++ -+. +.+++|++.+..-... +...
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~~-k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l 124 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYKQ-KEYRKALQALSVWKEQIKGTESPWLDTNIQQL 124 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 345667777766666666555554443 32 2233333322 233 6777777776655443 2110
Q ss_pred -CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH
Q 038206 133 -PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLV----SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVM 207 (614)
Q Consensus 133 -p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l 207 (614)
+|-.-=+.....+...|++.+|+.+++.+...=++ -+..+|+.++-++++.=-++.- +.+...=..-|--|
T Consensus 125 ~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyYem 200 (549)
T PF07079_consen 125 FSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYYEM 200 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHHHH
Confidence 11111134455667788888888888777664443 6777888877777654222111 11111101122222
Q ss_pred HHHHHhcC-------------------------------ChhHHHHHHHHhhhc-cCCChhhH-HHHHHHHHhhCchhHH
Q 038206 208 IDAFVQFG-------------------------------EFDSALKLFRRMQIL-FEPDGYTF-QSITSACAGLATLSLG 254 (614)
Q Consensus 208 i~~~~~~g-------------------------------~~~~A~~~~~~m~~~-~~pd~~t~-~~ll~a~~~~~~~~~~ 254 (614)
|..|.+.= +..--++++..-.+. +.|+.... ..+...+.. +.+.+
T Consensus 201 ilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 201 ILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 22222211 111112222222222 55553322 223333222 33444
Q ss_pred HHHHHHHHHhccCCCCc----cccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHH-------HHHHHHHHH----hc
Q 038206 255 MWAHAYILRHCDHSLVT----DVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTS-------WNSIILGFA----LH 317 (614)
Q Consensus 255 ~~~~~~~~~~~~~g~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~-------~~~li~~~~----~~ 317 (614)
.++-+.+... .+.+ =..++..++....+.++...|.+.+.-+. +|+... -..+-+..+ ..
T Consensus 279 ~~~ce~ia~~---~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 279 GHFCEAIASS---KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 4443333332 1111 13356677777788888888877776544 443321 111122222 12
Q ss_pred CCHHHHHHHHHHHhhhcCCCccHHHHHHHHH---HHhccCC-HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHH----HHH
Q 038206 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLS---ACNHRGM-VSEGRDYFDVMINEYNITP-VLEHYGCLVDL----LAR 388 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~---a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~----~~~ 388 (614)
-+...-+.+|++. +...+.--. ....++. -+-+.|. -++|..+++.+.+ +.| |..+-|.+... |..
T Consensus 356 Tklr~yL~lwe~~-qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 356 TKLRDYLNLWEEI-QSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred HHHHHHHHHHHHH-HhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHH
Confidence 2344456666665 444332222 1111222 2344454 7888888888864 333 44443333221 211
Q ss_pred c---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 389 A---G---NIDEALHLVSNMPMKP----DAVIWRSLLDA-CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 389 ~---g---~~~~A~~~~~~m~~~p----~~~~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
+ . ++-.-..++++.++.| +...-|.|-.| |.-.+|++.++.-.-..+.+..| ++.+|..++-.....
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~ 508 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMEN 508 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHH
Confidence 1 1 1112233445555544 33444555444 22567899988888888877766 489999999999999
Q ss_pred CChhhHHHHHHHH
Q 038206 458 RRWNDVGLVRKLM 470 (614)
Q Consensus 458 g~~~~a~~~~~~m 470 (614)
.++++|+.++..+
T Consensus 509 k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 509 KRYQEAWEYLQKL 521 (549)
T ss_pred hhHHHHHHHHHhC
Confidence 9999999999764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.80 E-value=14 Score=38.82 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=90.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-----HHHHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNS-----ITFVGVLSACN----HRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
+++...=.|+-+.+++++.+-.+..++.-.. .+|..++..+. .....+.+.+++..+.++ -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHHH
Confidence 3444444566666666665542222232222 22333333332 245677888888888653 35544443
Q ss_pred -HHHHHHHHcCCHHHHHHHHHhCCC-C------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHH-H
Q 038206 381 -CLVDLLARAGNIDEALHLVSNMPM-K------PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL-S 451 (614)
Q Consensus 381 -~li~~~~~~g~~~~A~~~~~~m~~-~------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 451 (614)
.-...+...|++++|.+.|++.-. + +....|..... + ....++++|.+.|.++.+...- ....|.-+ .
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~-~-~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWC-H-MFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHH-H-HHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 334556678889999888886421 1 22333443332 3 4557899999999999887655 55566544 3
Q ss_pred HHHhhcCCh-------hhHHHHHHHHHh
Q 038206 452 RVYASARRW-------NDVGLVRKLMTD 472 (614)
Q Consensus 452 ~~~~~~g~~-------~~a~~~~~~m~~ 472 (614)
.+|...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445667777 788888877644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.49 E-value=6.1 Score=39.20 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
-..|.+.|++..|...|++. .. .|. +...-+.++...... . -..++..|.-.|.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yera-v~------------~l~-~~~~~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERA-VS------------FLE-YRRSFDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHH-HH------------Hhh-ccccCCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 34677778888888877765 21 111 111122222222111 1 1335667888899999
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhH-HHHH
Q 038206 391 NIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDV-GLVR 467 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~ 467 (614)
++.+|++.-+.. ... +|+-...-=-.++ ...++++.|+..|+++++..|. |...-.-|+.+-.+..+..+. .++|
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~-l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQAL-LALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHH-HhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877765 333 4666655566677 7889999999999999999999 877777777777666655554 7788
Q ss_pred HHHHhC
Q 038206 468 KLMTDK 473 (614)
Q Consensus 468 ~~m~~~ 473 (614)
..|-.+
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 888654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.7 Score=39.35 Aligned_cols=95 Identities=13% Similarity=0.007 Sum_probs=39.2
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCC-CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC--chhHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVL-PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVS--DVYINNSL 176 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l 176 (614)
.|+.-+..+-. |++.+|...|...++..... -....+--|..++...|+.+.|..+|..+.+.-.+. -+...--|
T Consensus 144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444433322 44555555555554443100 011223334444555555555555555444422110 11223333
Q ss_pred HHHHHhcCCHHHHHHHHhhc
Q 038206 177 IHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m 196 (614)
.....+.|+.++|..+|+++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 33444455555555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.41 E-value=17 Score=34.71 Aligned_cols=55 Identities=7% Similarity=0.051 Sum_probs=36.8
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER 199 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 199 (614)
.....|++.++..++........+ +...--.|..+|...|+.+.|..+++.++..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 445667777777777777765433 3445556777777777777777777777554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.36 E-value=32 Score=37.93 Aligned_cols=212 Identities=9% Similarity=0.010 Sum_probs=103.5
Q ss_pred CCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCc--chHHHHHHHHHH-hCCCCCCchHHHHHHHHHHHhc-CCh
Q 038206 8 GGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSM--SQLKQIHAQALR-TALPQQHKTLLIYSRIIHFASF-ADL 83 (614)
Q Consensus 8 ~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~li~~~~~-g~~ 83 (614)
.++.++ |+.......+. .|+. .|+.+++++... +.....+..+.. .+..+.| . .+...|-..|.. |..
T Consensus 22 ~~qfkk---al~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-~-~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 22 SSQFKK---ALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-D-LTLQFLQNVYRDLGKL 93 (932)
T ss_pred hHHHHH---HHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-h-HHHHHHHHHHHHHhhh
Confidence 344444 55666665443 2332 244555554322 222233322221 1233234 5 778888888888 888
Q ss_pred hHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC----------Cc
Q 038206 84 DYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF----------AF 151 (614)
Q Consensus 84 ~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----------~~ 151 (614)
++|..++++..+ |+......+.-+|++. +.+.+-...=-+|-+.- + -+.+.|=++++.....- -+
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~-~~yk~qQkaa~~LyK~~-p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVRE-KSYKKQQKAALQLYKNF-P-KRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhC-C-cccchHHHHHHHHHHhccCCcccccchhH
Confidence 888888888766 5544444455567776 66654333322332221 1 23444444444432211 12
Q ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhh-----cCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 152 SQGKQAHAHIFKRG-LVSDVYINNSLIHFYASCGHLDLANKVFDN-----MLERSLVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 152 ~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
..|....+.+++.+ -.-+..-.-.-.......|+.++|++++.. ...-+...-|--+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455555555543 111111112222334456778888887732 122233333444555555666666555555
Q ss_pred Hhhhc
Q 038206 226 RMQIL 230 (614)
Q Consensus 226 ~m~~~ 230 (614)
+....
T Consensus 251 ~Ll~k 255 (932)
T KOG2053|consen 251 RLLEK 255 (932)
T ss_pred HHHHh
Confidence 55443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.70 E-value=6.6 Score=33.82 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=59.1
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMPM-KPDAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~~~~~~~~~~~ 426 (614)
.-...++.+++..++..+. -+.|.. ..-..-...+.+.|++.+|..+|+++.- .|....-..|+.-|+...++ .
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D-~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD-P 94 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC-h
Confidence 3356778888888888884 455542 2222334457788999999999999843 35555566677666344444 3
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 038206 427 LSEEVAKQVIESEGGICS 444 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~ 444 (614)
.=.....++.+.+++|+.
T Consensus 95 ~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHHhcCCChHH
Confidence 445556667777766444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.56 E-value=8.9 Score=32.33 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=25.2
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555555544333332 2223334555555555555555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.47 E-value=26 Score=35.47 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYN-ITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRS-LLDA 417 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~ 417 (614)
..|...+++-.+..-++.|+.+|-...+. | +.+++..+++++.-++. |+..-|.++|+-- ..-||...|.- .+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44556677777778889999999999764 6 67789999999987764 7778888888753 33466555432 3333
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCC-CCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGG-ICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+ ...++-+.|..+|+...+.-.+ --...|..++.--..-|+...+..+-++|.+
T Consensus 476 L-i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 L-IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred H-HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 3 6667888888888855443211 0136777777777777887777666655543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.92 E-value=6.1 Score=38.41 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=80.8
Q ss_pred hhhHHHHHHhccC-cchH----HHHHHHHHHhCCCCCCchHHHHHH--HHHHHhc-----CChhHHHHHHhcCCC-----
Q 038206 33 HSSLLSSLTECKS-MSQL----KQIHAQALRTALPQQHKTLLIYSR--IIHFASF-----ADLDYAFRVFYQIEN----- 95 (614)
Q Consensus 33 ~~~~~~~l~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~~--li~~~~~-----g~~~~A~~~f~~m~~----- 95 (614)
..+++++|..-.. .... ..++..+.+.|+. .+ . +++-+ +|..... -....|..+|+.|.+
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk-~~-~-y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFK-RS-E-YLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccC-cc-C-hHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 5556666665555 2222 7788888888887 65 5 54433 3333311 245678888888875
Q ss_pred --CChhhHHHHHHHHHcCCCCc----hHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccCC--cHHHHHHHHHHHHhCC
Q 038206 96 --PNSFTWNTLIRACARSVDAK----PQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLFA--FSQGKQAHAHIFKRGL 166 (614)
Q Consensus 96 --~~~~~~~~li~~~~~~~~~~----~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~ 166 (614)
++-.++.+++.. .. .++ +.+...|+.+...|..+-|.. ..+.+|..+..... ...+..+++.+.+.|+
T Consensus 137 Ts~~D~~~a~lLA~--~~-~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TS-EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred cCccchhHHHHHhc--cc-ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 456666666655 22 333 345677888888776634442 33334433332222 3366777888888887
Q ss_pred CCchhHHHHH
Q 038206 167 VSDVYINNSL 176 (614)
Q Consensus 167 ~~~~~~~~~l 176 (614)
++....|..+
T Consensus 214 kik~~~yp~l 223 (297)
T PF13170_consen 214 KIKYMHYPTL 223 (297)
T ss_pred ccccccccHH
Confidence 7766655533
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=2.7 Score=36.31 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHhcCC--CC-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 038206 70 IYSRIIHFASFADLDYAFRVFYQIE--NP-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACA 146 (614)
Q Consensus 70 ~~~~li~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~ 146 (614)
+|..--+.|..|++++|..+|.-+- .| |..-|..|-..+-.. +.+++|+..|......+. -|...+-....++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~-k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l 116 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK-KQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccc--CCCCccchHHHHHH
Confidence 3444444555577777777776543 22 333333333333344 777777777766655442 23444445556666
Q ss_pred ccCCcHHHHHHHHHHHH
Q 038206 147 YLFAFSQGKQAHAHIFK 163 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~ 163 (614)
..|+.+.|+..|...+.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 66777777776666655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.65 E-value=13 Score=30.83 Aligned_cols=61 Identities=15% Similarity=0.076 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
.+..+....+.|+-++-.++++.+.+.-.|++.....+..||.+.|+..++..++..+-+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445566666666666666666665444555556666666666666666666665555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.46 E-value=36 Score=35.83 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=120.8
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC--CCccHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVEES--FSPNSITFVGV 346 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--~~p~~~t~~~l 346 (614)
+..+|+..++.-.+.|+.+.+.-+|+...-| =...|--.+.-.-..|+.+-|..++..- .+-- -.|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~-~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARA-CKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhh-hhhcCCCCcHHHHHHHH
Confidence 5678899999999999999999999988755 2234555555555558888888777654 2221 22333333333
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHHH---
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEAL---HLVSNM-PMKPDAVIWRSLLDAC--- 418 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~~--- 418 (614)
+ +-..|+...|..+++.+.++ . |+ +..-..-+.+..+.|..+.+. +++... +.+-+..+...+.--+
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 45678999999999999774 3 54 333344566777888888887 444443 2222222222222211
Q ss_pred -HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 419 -CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 419 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
....++.+.|..++.++.+..|. +...|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCCc
Confidence 13447889999999999999988 88889999888776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.33 E-value=14 Score=31.11 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhc-CCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRLVVEE-SFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR 388 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~-g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (614)
....+.|++++|.+.|+.+ ... ...| ....-..++.++.+.+++++|...++..++-+.-.|++ -|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L-~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEAL-DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHH-HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence 3445678888888888877 332 1111 22445567777888888888888888887655555543 34455555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.31 E-value=11 Score=31.84 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=51.3
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVL-EHYGCLVDLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..++.+++..+++.|. -+.|+. ..-..-.-.+...|++++|.++|++..-.+ ....-..|+.-|....|| ..=.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D-p~Wr 97 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD-AEWH 97 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC-hHHH
Confidence 4778888888888874 445532 222223344678899999999999885443 333344455444233343 2334
Q ss_pred HHHHHHHHhcCCCCc
Q 038206 430 EVAKQVIESEGGICS 444 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~ 444 (614)
....++++.+.+|+.
T Consensus 98 ~~A~~~le~~~~~~a 112 (153)
T TIGR02561 98 VHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHhCCCHhH
Confidence 444555555555333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.88 E-value=4.8 Score=39.90 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHhhcCC------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHH
Q 038206 178 HFYASCGHLDLANKVFDNMLE------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQ 239 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~ 239 (614)
+.|.+.|++..|..-|+.... .-+.+++.+..+|.+.+++.+|++.-++.+..-++|.-..-
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356778888877777665311 02346777888888999999999888888766666666666
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 240 SITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 240 ~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
---.|+...++++.|+..|..+.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 6666777777777777777777764
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.72 E-value=3.6 Score=39.19 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-----cCCCccHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVE-----ESFSPNSITFVGV 346 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~g~~p~~~t~~~l 346 (614)
++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++ .. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l-~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL-KKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH-HHHhhhhcCCCccHHHHHHH
Confidence 677889999999999999999988763 27789999999999999999999999887 43 4666666555544
Q ss_pred HHH
Q 038206 347 LSA 349 (614)
Q Consensus 347 l~a 349 (614)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.66 E-value=24 Score=32.95 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH---HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVY---VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|.-+..+.|.+..|..-++++++.-++ ...+. -.+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 333448889999999999999998666 44444 4567889999999999988766654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.75 E-value=10 Score=32.62 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhc----CChhHHHHHHhcCCC--CChhhHHHHH-HHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHH
Q 038206 69 LIYSRIIHFASF----ADLDYAFRVFYQIEN--PNSFTWNTLI-RACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFA 141 (614)
Q Consensus 69 ~~~~~li~~~~~----g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~l 141 (614)
.+.+.||..... ++.+++..+++.+.- |.......+- .-+.+. |++.+|+.+|+++.... |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~~---~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEERA---PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhccC---CCChHHHHH
Confidence 455666665554 788888888887743 4433322221 134455 88999999999887654 444434444
Q ss_pred HHHHHccCCcHHHHHHH-HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 038206 142 LKACAYLFAFSQGKQAH-AHIFKRGLVSDVYINNSLIHFYASCGHLDLANK 191 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 191 (614)
+..|..... +...+.+ +++...+-.|+. ..|+..+....+...|..
T Consensus 84 lA~CL~~~~-D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALG-DPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcC-ChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444433322 2233333 345554433332 334454444444444333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.6 Score=39.20 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.++..+ ...|+.+.+...++++.+..|- +...|..++.+|.+.|+...|...++.+.
T Consensus 158 ~lae~~-~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEAL-IACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHH-HhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444 4444555555555555555555 55555555555555555555555554443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.52 E-value=8.3 Score=37.22 Aligned_cols=158 Identities=12% Similarity=0.067 Sum_probs=111.6
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH----HHHHcCC
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD----LLARAGN 391 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~ 391 (614)
-+|+..+|-..++++ ....+.|...+.-.=.+|...|+.+.-...++.+.. ...|+...|.-+=. ++..+|-
T Consensus 115 ~~g~~h~a~~~wdkl--L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKL--LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHH--HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 378888888889887 334566778888888899999999999999998864 45666655554444 4457999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC---CCchhHHHHHHHHhhcCChhhHHHH
Q 038206 392 IDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG---ICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 392 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
+++|++.-++. .+.| |...-.++-..+ ...++..++.++..+-...=.+ .-...|-...-.+...+.++.|.++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl-em~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVL-EMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHH-HhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999998886 5554 566666777777 7888888888876654332111 0123344555567778999999999
Q ss_pred HHHHHhCCCccC
Q 038206 467 RKLMTDKGVTKE 478 (614)
Q Consensus 467 ~~~m~~~g~~~~ 478 (614)
|+.=.-+.+.++
T Consensus 270 yD~ei~k~l~k~ 281 (491)
T KOG2610|consen 270 YDREIWKRLEKD 281 (491)
T ss_pred HHHHHHHHhhcc
Confidence 986544444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.38 E-value=10 Score=36.97 Aligned_cols=194 Identities=10% Similarity=0.030 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------hcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH---HH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVF-------ESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS---IT 342 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~-------~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~---~t 342 (614)
++..+.++.++.|.++++...- .+..+. -..+|--+..++-+.-++.+++.+-..-....|..|.. ..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3444555556666655543321 111111 12344455555555555566665554331233444422 22
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-----
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNI--TP--VLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKP----- 406 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p----- 406 (614)
..++-.|....+.++++.+.|+...+-..- .| ...+|-.|-..|++..++++|.-+..+. ++.-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334555666777888888888877552111 12 2456778888899988888876554432 3221
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-CchhH----HHHHHHHhhcCChhhHHHHHHH
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-CSGVY----VLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.......|--++ +..|.+..|.+..++..++.... |..+| ..+.++|-..|+.+.|+.-++.
T Consensus 205 r~~~lyhmaVal-R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVAL-RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 112333455567 88888888888888876653220 23333 4678888888888887766654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.94 E-value=6.1 Score=37.73 Aligned_cols=97 Identities=12% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-CC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-KR--------DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
|.+....+...++..-....+++++...+-++. .| ..++|-.++. .-++++++-++..= ...|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~np-IqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNP-IQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCc-chhcccc
Confidence 666677777777877777888899888776665 22 3344544443 34677888888776 7889999
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
|..|+..+++.+.+.+++.+|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776653
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.89 E-value=0.45 Score=40.66 Aligned_cols=86 Identities=8% Similarity=0.074 Sum_probs=63.7
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhH
Q 038206 140 FALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDS 219 (614)
Q Consensus 140 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 219 (614)
.+++.+.+.+.+....++++.+.+.+...+....+.|+..|++.++.+...++++... ......++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence 4566777778888888888888887766778889999999999988888888887432 2444567777777777778
Q ss_pred HHHHHHHhh
Q 038206 220 ALKLFRRMQ 228 (614)
Q Consensus 220 A~~~~~~m~ 228 (614)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777777764
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.87 E-value=10 Score=31.29 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc-CCCCc---hhHHHHHHHHhhcC
Q 038206 385 LLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE-GGICS---GVYVLLSRVYASAR 458 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g 458 (614)
+++..|+++.|++.|.+. .+- .....||.=-.++ +-.|+.++|+.-+++.+++. ++ .. ..|+.-...|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~-RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQAL-RLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHH-HHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677777777777665 222 2456677777777 77777777777777777763 33 21 23455566677778
Q ss_pred ChhhHHHHHHHHHhCCC
Q 038206 459 RWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~g~ 475 (614)
+-+.|..=|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888877777766664
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.85 E-value=11 Score=32.84 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhcC
Q 038206 278 SLIDMYCKCGSLDIARQVFESM 299 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m 299 (614)
+|.-+-.|.|++.+|.+.|..+
T Consensus 172 ALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHH
Confidence 4444444555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.4 Score=27.01 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 446 VYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 446 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+|..|.++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999988743
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.78 E-value=41 Score=33.74 Aligned_cols=147 Identities=11% Similarity=-0.008 Sum_probs=75.3
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHH--HHHhcCCHHHHHHHHhcCCCCCHH---------------HHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLID--MYCKCGSLDIARQVFESMPKRDLT---------------SWN 308 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~m~~~~~~---------------~~~ 308 (614)
...++.+.+.++-..+.+. .....+..+++ ++.-.++.+.|...|++-..-|.. .|.
T Consensus 180 ~~~~~~~~a~~ea~~ilkl------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKL------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhcccchhHHHHHHHHHhc------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 4556666666655555554 01122222332 223346667777777765532221 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhh---cCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 038206 309 SIILGFALHGRAEAALKYFDRLVVE---ESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVD 384 (614)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m~~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~ 384 (614)
-=-.-..++|.+.+|.+.+.+. .. ..++|+...|........+.|++++|+.--+... .+.|. +..|-.-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Ytea-l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEA-LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHh-hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHH
Confidence 1122335678888888888765 22 1234444555555556677788888877665553 23322 112222223
Q ss_pred HHHHcCCHHHHHHHHHhC
Q 038206 385 LLARAGNIDEALHLVSNM 402 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m 402 (614)
++.-.+++++|.+-|+..
T Consensus 330 c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334456677777766654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.5 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=45 Score=34.20 Aligned_cols=143 Identities=11% Similarity=0.067 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHhhhcCCCccHH-HHHHHHHHHh--------c-cCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSI-TFVGVLSACN--------H-RGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLA 387 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~-t~~~ll~a~~--------~-~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 387 (614)
..+.|+.+|.+......+.|+.. .|..+..++. . .....+|.++-+...+ +.| |......+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHH
Confidence 35577888887622345666653 2322222211 1 2334556666666643 333 6666667777778
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhhcCChhh
Q 038206 388 RAGNIDEALHLVSNM-PMKPDAV---IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG-VYVLLSRVYASARRWND 462 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 462 (614)
-.|+++.|..+|++. ...||.. .|..++. .-.|+.++|.+.+++.+++.|.--.. ..-..+++|... ..++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~---~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~ 425 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVH---FHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKN 425 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH---HHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhh
Confidence 888899999999987 4566543 3333333 55799999999999999998872222 222344567655 4566
Q ss_pred HHHHHH
Q 038206 463 VGLVRK 468 (614)
Q Consensus 463 a~~~~~ 468 (614)
|.+++-
T Consensus 426 ~~~~~~ 431 (458)
T PRK11906 426 NIKLYY 431 (458)
T ss_pred hHHHHh
Confidence 666653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.07 E-value=22 Score=33.52 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH-HHHHHHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPDA-VIWRSLLD 416 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-~~~~~ll~ 416 (614)
|+.-+.. .+.|++..|.+-|...++++.-.+ ....+-.|...+...|++++|..+|..+ |-.|-. ...--|-.
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4444432 334445555555555554221111 1223334555555555555555555444 211211 22222222
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.. ...|+.+.|...++++.+.-|.
T Consensus 224 ~~-~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SL-GRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HH-HHhcCHHHHHHHHHHHHHHCCC
Confidence 33 4555666666666666665555
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.06 E-value=46 Score=36.59 Aligned_cols=142 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHH
Q 038206 279 LIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSE 358 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~ 358 (614)
..+-+.+.|+.++|...|-+-..--.. ..+|.-|....+..+-..+++.+ .+.|+.-... -..|+.+|.+.++.+.
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L-~~~gla~~dh-ttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEAL-HKKGLANSDH-TTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHH-HHcccccchh-HHHHHHHHHHhcchHH
Confidence 344445567777776666443311111 12344445555555555666666 5555543322 2346667777777766
Q ss_pred HHHHHHHHHHhcCCC-CChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 359 GRDYFDVMINEYNIT-PVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 359 a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
-.++.+..- + |.. -|. ...+..+.+.+-+++|..+-.+.+. +......++.-. +++++|.+.++.+
T Consensus 450 L~efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ille~~----~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELLATKFKK--HEWVLDILLEDL----HNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHHHHh----cCHHHHHHHHhcC
Confidence 655554332 1 111 122 2355666666666666666655442 444445554443 6777777766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.99 E-value=3 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+|..+...+ ...|++++|+..|+++++..|+
T Consensus 3 ~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAY-FQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHH-HHhCCchHHHHHHHHHHHHCcC
Confidence 455666666 6677777777777777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=84.99 E-value=27 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPKRD------LTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|....-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44555556666666666666665554321 123344444444455555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.57 E-value=8.9 Score=31.56 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 179 FYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+.+..|+++.|++.|.+.. ......||.=..++--.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777776642 23456677777777777777777776666654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=23 Score=36.18 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc
Q 038206 355 MVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLAR---------AGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH 422 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 422 (614)
..+.|..+|........+.|+ ...|..+...+.. .....+|.++-++. ...| |......+-.+. ...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~-~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLIT-GLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-Hhh
Confidence 356778888888754566775 3444444433322 22344566665554 3333 555555555555 556
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++++.|...|+++..++|+ ...+|........-+|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7799999999999999999 888999999999999999999999987443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.75 E-value=49 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc---cHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 301 KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP---NSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 301 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
.....+|..+...+.+.|+++.|...+.++ ...+..+ +......-....-..|+..+|...++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~-~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRL-FQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHH-hccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567888888888899999888888877 4432111 122223334445566777888887777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.71 E-value=29 Score=30.30 Aligned_cols=41 Identities=7% Similarity=0.123 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
++...+.+.+++|+...+..+++.+.+.|+...-..++..-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~ 55 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH 55 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 34455556677777777777777777777666655555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=82.79 E-value=4 Score=26.33 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+|..+...|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555666666666666666655543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.60 E-value=4.5 Score=23.97 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
|..+-..+ ...|++++|++.+++.++..|+
T Consensus 4 ~~~lg~~~-~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAY-YQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHH-HHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHHCcC
Confidence 44444455 6666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.49 E-value=8.1 Score=34.32 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERS------LVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566667777777777777776664432 12344555555566666666666555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.19 E-value=14 Score=28.99 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
-+..+-++.+ -...+.|+.....+.|.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 27 we~rrglN~l-~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNL-FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHH-hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3556666666 6677889999999999999999999999999998876544 33336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.92 E-value=55 Score=31.58 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
++..+-...+.++++.|+......+.+.+..+++ ....+.++...|.. +|+..+..+ .. -.||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l-~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTL-LY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHH-Hh--hCCChhHHHHHHHHH
Confidence 3455555566666666664433334444433332 23455666666664 566666655 22 133554444444444
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.57 E-value=10 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
++.+-++.+...+.. |++....+.|+||.+.+|+..|.++++.++... ..+..+|..++
T Consensus 25 e~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666666667 888888888888888888888888887666321 11333555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.47 E-value=65 Score=32.10 Aligned_cols=67 Identities=7% Similarity=0.077 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 406 PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI---CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
....+|..+...+ ++.|+++.|...+.++...++.. .+.....-+...-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~a-Rk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLA-RKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHH-HHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566899999999 99999999999999998866432 3455556677788889999999999888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.45 E-value=83 Score=33.28 Aligned_cols=119 Identities=9% Similarity=-0.015 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-----PMKPDAVIWRSL 414 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l 414 (614)
..+|...+.--...|+.+...-+|+...- .+.-=...|--.+.-....|+.+-|..++... +-.|......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35566666666666666666666665532 22222333444444444557666666655543 222344333333
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHH
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVG 464 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 464 (614)
++...|++..|..+++.+.+.-|. ....-..-+.+..+.|..+.+.
T Consensus 375 ---f~e~~~n~~~A~~~lq~i~~e~pg-~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 ---FEESNGNFDDAKVILQRIESEYPG-LVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ---HHHhhccHHHHHHHHHHHHhhCCc-hhhhHHHHHhHHHHhcchhhhh
Confidence 334467777777777777765544 2222223345556666666666
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 2e-07
Identities = 22/210 (10%), Positives = 58/210 (27%), Gaps = 14/210 (6%)
Query: 225 RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL-----RHCDHSLVTDVLVNNSL 279
+ Q + C L A+ L + + + N++
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCC-----LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 280 IDMYCKCGSLDIARQVFESMPKR----DLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335
+ + + G+ V + DL S+ + + + ++ + +E
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 336 FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395
++ +LS + ++ + P + L D+ A+ G +
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 396 LHLVSNMPMKPDAVIWRSLLDACCKKHASV 425
+ ++ + A SV
Sbjct: 292 KLHLPLKTLQCLFEKQLHMELASRVCVVSV 321
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 32/274 (11%), Positives = 76/274 (27%), Gaps = 19/274 (6%)
Query: 40 LTECKSMSQLKQ------IHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI 93
L + K Q++ + + L + R++ L+ R
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQ--AP 87
Query: 94 ENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQ 153
E+P L++ + + Q Q + + K C
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQH--SQAQLSGQQQRLLAFFKCCLLTDQLPL 145
Query: 154 GKQ---AHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSL----VSWNV 206
H ++ + + + N+++ +A G V + + L +S+
Sbjct: 146 AHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 207 MIDAFVQFGEFDSAL-KLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHC 265
+ + + + + +M F ++ + AT+ +
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH-KVKPTFSL 264
Query: 266 DHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESM 299
L V + L D+Y K G + +
Sbjct: 265 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 28/209 (13%), Positives = 67/209 (32%), Gaps = 24/209 (11%)
Query: 42 ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASFADLDYAFRVFYQI----ENPN 97
+ I+ +A+ T L + Y+ S + ++ ++ +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADY--EESRMKYEKVHSIYNRLLAIEDIDP 133
Query: 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157
+ + ++ R+ K ++F++ E D T A + + ++
Sbjct: 134 TLVYIQYMKFARRAEGIK-SGRMIFKKARE------DARTRHHVYVTAALMEYYCSKDKS 186
Query: 158 HAH-IFKRGLVS---DVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-------WNV 206
A IF+ GL + I + + + +F+ +L + W
Sbjct: 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246
Query: 207 MIDAFVQFGEFDSALKLFRRMQILFEPDG 235
+ G+ S LK+ +R F +
Sbjct: 247 FLAFESNIGDLASILKVEKRRFTAFREEY 275
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 9e-06
Identities = 66/475 (13%), Positives = 136/475 (28%), Gaps = 137/475 (28%)
Query: 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFES--------MPKRDLTSWNSIILG 313
++ ++ V + + + CK D+ + + +
Sbjct: 14 HQYQYKDIL-SVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT- 70
Query: 314 FALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSA-CNHRGMVSEG-RDYFDVMINE-- 369
L + E ++ F VEE N + + M++ + D + N+
Sbjct: 71 --LLSKQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 370 ----YNIT---PVLEHYGCLVDLLARAGNIDEALH---------LVSN-------MPMKP 406
YN++ P L+ L++L A N+ + + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL-RPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 407 DAVIWRSLLDACCKKHASVV-----LSEEVAKQVIESEGGICSGVY-----------VLL 450
+ W +L C +V+ L ++ + +L
Sbjct: 182 FKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 451 SRVYA----------SARRWN--DVGLVRKLMT--DKGVT---KEPGCSSIEIDGIAHEF 493
S+ Y +A+ WN ++ + L+T K VT + I +D +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 494 --------FAGDTSH------PQTKQIYGF-LDLIDEKLKSRGYTPDYSQAAMVDELDDG 538
+ L +I E ++ T D + D+L
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 539 KQSSL--------RLHSERLAI----------ALGIL--NLKPGMPIRVFKNLR----VC 574
+SSL R +RL++ L ++ ++ + V L V
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 575 KDCHEVTKLI-SRIFNVEIIVRDRARFH-----HFKDGSCSCMD---------YW 614
K E T I S +++ + + H H+ D Y+
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 18/206 (8%)
Query: 42 ECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI-IHFASFADLDYAFRVFYQIENPNSFT 100
+ I+ +A+ T L + Y+ + + + IE+ +
Sbjct: 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 357
Query: 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160
AR + ++F++ E D T A + + ++ A
Sbjct: 358 VYIQYMKFARRAEGIKSGRMIFKKARE------DARTRHHVYVTAALMEYYCSKDKSVAF 411
Query: 161 -IFKRGLV---SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVS-------WNVMID 209
IF+ GL + I + + + +F+ +L + W +
Sbjct: 412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471
Query: 210 AFVQFGEFDSALKLFRRMQILFEPDG 235
G+ S LK+ +R F +
Sbjct: 472 FESNIGDLASILKVEKRRFTAFREEY 497
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.78 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.78 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.73 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.67 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.67 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.66 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.58 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.56 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.5 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.43 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.39 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.39 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.39 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.33 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.33 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.32 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.32 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.31 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.31 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.26 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.26 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.24 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.24 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.13 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.1 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.09 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.08 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.05 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.04 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.01 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.01 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.98 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.96 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.96 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.91 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.81 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.74 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.72 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.71 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.68 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.67 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.66 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.65 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.65 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.55 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.54 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.54 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.45 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.45 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.43 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.41 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.38 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.38 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.37 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.36 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.36 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.36 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.34 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.33 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.32 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.31 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.29 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.29 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.27 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.24 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.23 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.23 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.21 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.19 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.18 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.16 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.16 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.12 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.11 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.09 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.06 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.05 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.05 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.02 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.02 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.01 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.95 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.95 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.94 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.93 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.89 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.89 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.89 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.87 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.86 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.84 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.81 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.8 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.79 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.78 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.77 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.71 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.71 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.67 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.64 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.62 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.6 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.59 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.57 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.53 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.52 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.49 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.47 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.47 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.46 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.39 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.15 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.07 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.88 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.45 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.37 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.33 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.31 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.49 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.2 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.06 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.7 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.15 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 88.87 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.56 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.17 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 88.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.47 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 83.33 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.19 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 83.03 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.6 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.28 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.04 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=335.56 Aligned_cols=448 Identities=8% Similarity=-0.044 Sum_probs=354.8
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCCCCChhhHHHHHHhccCcchH---HHHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGSFNNHSSLLSSLTECKSMSQL---KQIHAQALRTALPQQHKTLLIYSRIIHFA 78 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~~p~~~~~~~~l~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~li~~~ 78 (614)
+.+|.+.|++++ |+++|++|.. ..|+..++..+...|...++. ..++..+.. .+ ++ + .+++.++.+|
T Consensus 91 ~~~~~~~g~~~~---A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~-~-~~~~~l~~~~ 160 (597)
T 2xpi_A 91 RHDALMQQQYKC---AAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YN-RS-S-ACRYLAAFCL 160 (597)
T ss_dssp HHHHHHTTCHHH---HHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GG-TC-H-HHHHHHHHHH
T ss_pred HHHHHHccCchH---HHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cc-cc-h-hHHHHHHHHH
Confidence 556777777765 5577777763 356666666666666655555 333332221 23 55 6 7777777777
Q ss_pred hc-CChhHHHHHHhcCCC-C------------------ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-h
Q 038206 79 SF-ADLDYAFRVFYQIEN-P------------------NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-T 137 (614)
Q Consensus 79 ~~-g~~~~A~~~f~~m~~-~------------------~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t 137 (614)
.+ |++++|.++|+++.. . ++.+|+.++.+|.+. |++++|+++|++|.+.+ |+.. .
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~ 236 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL-SNFDRAKECYKEALMVD---AKCYEA 236 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---TTCHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC---chhhHH
Confidence 77 777777777774332 2 366777777777777 77777777777777765 4433 3
Q ss_pred HHHHHHHHHccCCcHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHH
Q 038206 138 FPFALKACAYLFAFSQ--GKQA-HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFV 212 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~ 212 (614)
+..+...+...+..+. +..+ +..+...+..+...+|+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 3333332222211111 1111 33344444444555677778899999999999999999987 78999999999999
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+.|++++|+++|+++....+.+..++..++.++...|+.+++..++..+.+. .+.+..+++.++.+|.++|++++|
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999998765568889999999999999999999999999975 456788999999999999999999
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 293 RQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 293 ~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
.++|+++. ..+..+|+.++.+|.+.|++++|+++|++| ... .+.+..++..+..+|.+.|++++|.++|+.+.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA-ARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999875 357889999999999999999999999999 543 2346789999999999999999999999999763
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
.+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..+..+| .+.|++++|.+.++++.+.+|
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSS
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCC
Confidence 3447889999999999999999999999987 45787 78999999999 999999999999999999998
Q ss_pred CCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
. +..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 548 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 N-DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 8 8999999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-35 Score=315.28 Aligned_cols=414 Identities=8% Similarity=-0.068 Sum_probs=332.7
Q ss_pred HHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHH
Q 038206 77 FASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGK 155 (614)
Q Consensus 77 ~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 155 (614)
.+.+ |.+..+...|+.++.+++..|+.++..+.+. |++++|+.+|++|.... |+..++..++.+|...|++++|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQ-QQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHc-cCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHH
Confidence 3455 8888899999999989999999999999999 99999999999999765 88899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------ChhHHHHHHHHHHhcCC
Q 038206 156 QAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-------------------SLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 156 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~ 216 (614)
++|+.+.. .+++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99998864 3678899999999999999999999999965333 47899999999999999
Q ss_pred hhHHHHHHHHhhhccCCC-hhhHHH--------------------------------------HHHHHHhhCchhHHHHH
Q 038206 217 FDSALKLFRRMQILFEPD-GYTFQS--------------------------------------ITSACAGLATLSLGMWA 257 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd-~~t~~~--------------------------------------ll~a~~~~~~~~~~~~~ 257 (614)
+++|+++|++|.+. .|+ ...+.. ++..+.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999875 333 222222 24456678889999999
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEE 334 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 334 (614)
++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|+.++|.++|+++ ...
T Consensus 295 ~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 368 (597)
T 2xpi_A 295 LSSINGL-----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDL-VDR 368 (597)
T ss_dssp HHTSTTG-----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH-HHH
T ss_pred HHHhhcC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHH-Hhh
Confidence 8887653 5789999999999999999999999999886 347789999999999999999999999999 532
Q ss_pred CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 038206 335 SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWR 412 (614)
Q Consensus 335 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~ 412 (614)
.+.+..++..+...|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|+
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 445 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYL 445 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHH
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3446788999999999999999999999999762 2346889999999999999999999999987 333 4789999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC----CCccCC-CccEEEEC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK----GVTKEP-GCSSIEID 487 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~~~~-~~~~~~~~ 487 (614)
.+..+| .+.|++++|.++|+++.+..|. ++.+|..++.+|.+.|++++|.++|+++.+. +..|+. ...|.
T Consensus 446 ~l~~~~-~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~--- 520 (597)
T 2xpi_A 446 FLGMQH-MQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA--- 520 (597)
T ss_dssp HHHHHH-HHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH---
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH---
Confidence 999999 9999999999999999999998 8999999999999999999999999999775 444431 11111
Q ss_pred CEEEEEEeCCCCCCChHHHHHHHHHHHH
Q 038206 488 GIAHEFFAGDTSHPQTKQIYGFLDLIDE 515 (614)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 515 (614)
. +...+..+++.+++.+.++++.+
T Consensus 521 ~----l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 521 N----LGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp H----HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 11122346788888776555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=252.44 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=141.5
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDN 195 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 195 (614)
..+..+.+++.+.+........++.+|++|++.|++++|.++|++|.+.|+.||..+||+||++|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777652223467888899999999999999999999999999999999999888877653221
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcccc
Q 038206 196 MLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVL 274 (614)
Q Consensus 196 m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 274 (614)
.+.+..++|.++|++|... +.||..||+++|.+|++.|+++.|.++++.|.+. |+.||..
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ 141 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQPRLR 141 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCCCHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCccc
Confidence 2234456777778887776 6666666666666666666666666666666666 7777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP----KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
+||+||.+|++.|++++|.++|++|. .||..||++||.+|++.|+.++|.++|++| ++.|..|+..||+.++..|
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL-RDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTSSBCHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhCCCcCHHHHHHHHHHH
Confidence 77777777777777777777777765 467777777777777777777777777777 7777777777777777766
Q ss_pred hc
Q 038206 351 NH 352 (614)
Q Consensus 351 ~~ 352 (614)
+.
T Consensus 221 ~s 222 (501)
T 4g26_A 221 KS 222 (501)
T ss_dssp HS
T ss_pred hc
Confidence 54
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=244.69 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC---------cHHHHHHHHHHHHhCCCCc
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---------FSQGKQAHAHIFKRGLVSD 169 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~ 169 (614)
..++.+|.+|++. |++++|+++|++|.+.|+. ||..||++||.+|+..+. ++.|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 4578888888888 8999999999999888888 899999999988876654 5778888999988898999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhc----CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHH
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNM----LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSA 244 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a 244 (614)
..+||+||++|++.|++++|.++|++| ..||..+||+||.+|++.|++++|.++|++|.+. +.||..||+++|.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999888888 4568888999999998888888999999888888 88888888888888
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
|++.|++++|.++++.|.+. |..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~---g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL---VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888 8888888888888887754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=213.83 Aligned_cols=363 Identities=12% Similarity=0.087 Sum_probs=272.2
Q ss_pred CChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIEN--PN-SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
|++++|.+.|.++.+ |+ ...+..+...+.+. |++++|...++...+.. + .+..+|..+..++...|++++|...
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~~~~~a~~~~~~a~~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-C-CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888877643 43 34455555666677 88888888888877765 2 4566788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd 234 (614)
++.+++.. +.+...+..+..+|.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++....+.+
T Consensus 90 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 88887764 3345567888888888888888888887763 23 34567777778888888888888888887654445
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSII 311 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li 311 (614)
..++..+...+...|+++.|...++.+.+. .+.+...+..+...+...|++++|...|++.. ..+..+|..+.
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 677777888888888888888888888775 23345677778888888888888888887654 23577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 312 LGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
..|.+.|++++|++.|+++ ... .| +..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|
T Consensus 245 ~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRA-IEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCHHHHHHHHHHH-Hhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 8888888888888888887 442 33 3456777778888888888888888888753 3456778888888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 391 NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
++++|.+.++++ ...| +..+|..+...+ ...|++++|...++++++..|. +...|..+...+.+.|
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHcc
Confidence 888888888876 3444 466777888877 8888888888888888888877 7777777777776655
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-23 Score=209.69 Aligned_cols=351 Identities=12% Similarity=0.080 Sum_probs=302.3
Q ss_pred HHHHcCCCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 106 RACARSVDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 106 ~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
..+.+. |++++|++.++++.+.. |+. ..+..+...+...|++++|...++..++.. +.+..++..+...|.+.|
T Consensus 7 ~~~~~~-g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQA-GDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHC-CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345566 99999999999998876 554 455556667788999999999999998875 557889999999999999
Q ss_pred CHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 185 HLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 185 ~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
++++|...|+++. .| +..+|..+..++.+.|++++|++.|+++....+.+...+..+...+...|++++|...+..+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999873 34 55689999999999999999999999987653334556677778888999999999999999
Q ss_pred HHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 262 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
.+. .+.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++. .. ..|
T Consensus 162 l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~--~~p 234 (388)
T 1w3b_A 162 IET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LS--LSP 234 (388)
T ss_dssp HHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HH--HCT
T ss_pred HHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--hCc
Confidence 986 34457789999999999999999999999876 336778999999999999999999999987 44 345
Q ss_pred c-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 038206 339 N-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLL 415 (614)
Q Consensus 339 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll 415 (614)
+ ..++..+..++...|++++|.+.|+.+.+. -+.+...|..+...|.+.|++++|.+.|+++ .. .++..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 4 578888999999999999999999999762 2335778999999999999999999999987 22 35788999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+ ...|++++|...++++.+..|. +..++..+..+|.+.|++++|...++++.+
T Consensus 313 ~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 313 NIK-REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHH-HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHH-HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999 9999999999999999999888 889999999999999999999999999876
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=196.67 Aligned_cols=390 Identities=8% Similarity=-0.045 Sum_probs=309.0
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
..+-.+...|.+ |++++|...|+++.. ||...|..+...+.+. |++++|+..|+++.+.+ + .+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSV-GDLKKVVEMSTKALELK-P-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-S-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC-h-HHHHHHHHHHHHH
Confidence 345555666667 999999999998864 8999999999999999 99999999999999886 2 3456888899999
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh-------------------------------
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFD------------------------------- 194 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~------------------------------- 194 (614)
...|++++|...++.+.+.+. ++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998763 344444445544444332222222221
Q ss_pred -------hcC---------CC-ChhHHHHHHHHHHh---cCChhHHHHHHHHhhh-----c-c--------CCChhhHHH
Q 038206 195 -------NML---------ER-SLVSWNVMIDAFVQ---FGEFDSALKLFRRMQI-----L-F--------EPDGYTFQS 240 (614)
Q Consensus 195 -------~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~-~--------~pd~~t~~~ 240 (614)
... .+ +...|......+.. .|++++|+..|+++.. . . +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 110 01 13344444454554 8999999999999987 2 1 223456777
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 038206 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALH 317 (614)
Q Consensus 241 ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 317 (614)
+...+...|+++.|...+..+.+. .. +..++..+...|...|++++|...|+++. ..+..+|..+...|...
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIEL---FP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH---CC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---Cc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 888899999999999999999987 32 27788999999999999999999998765 34678899999999999
Q ss_pred CCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038206 318 GRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALH 397 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (614)
|++++|+..|++. .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+
T Consensus 318 ~~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 318 QNYDQAGKDFDKA-KELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TCTTHHHHHHHHH-HHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHH-HHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998 4432 224567888888999999999999999999763 23356788899999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH
Q 038206 398 LVSNM----PMKPD----AVIWRSLLDACCKK---HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 398 ~~~~m----~~~p~----~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
.++++ +..|+ ..+|..+...+ .. .|+++.|...++++.+..|. +..++..+..+|.+.|++++|...
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLL-TRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHH-HTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99887 22233 44888888888 88 99999999999999999998 889999999999999999999999
Q ss_pred HHHHHhC
Q 038206 467 RKLMTDK 473 (614)
Q Consensus 467 ~~~m~~~ 473 (614)
+++..+.
T Consensus 472 ~~~a~~~ 478 (514)
T 2gw1_A 472 FEESADL 478 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-19 Score=188.84 Aligned_cols=298 Identities=8% Similarity=0.022 Sum_probs=177.1
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
++..|..+...+.+. |++++|+.+|+++.+.. + .+..++..+..++...|++++|...++.+++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 345566666666666 77777777777666654 2 345566666666666677777777777666654 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHH------------HHHhcCChhHHHHHHHHhhhccCCChhhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLER---SL---VSWNVMID------------AFVQFGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
..+|.+.|++++|...|+++.+. +. ..|..++. .+.+.|++++|+..|+++....+.+..++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 67777777777777777666332 12 44444433 36667777777777776665444455555
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHH-----
Q 038206 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSI----- 310 (614)
Q Consensus 239 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~l----- 310 (614)
..+..++...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|+++. .| +...|..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 55666666666666666666665553 22345566666666666666666666666553 22 33333333
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHhhhcCCCcc-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhH
Q 038206 311 -------ILGFALHGRAEAALKYFDRLVVEESFSPN-----SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 378 (614)
Q Consensus 311 -------i~~~~~~g~~~~A~~l~~~m~~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 378 (614)
...+...|++++|+..|+++ .. ..|+ ...+..+..++.+.|++++|...++.+.+. .+.+...
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~-l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~ 331 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESV-MK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH
Confidence 55666666666776666666 33 2233 234555566666666666666666666542 2234566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKPD 407 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 407 (614)
|..+..+|.+.|++++|.+.|+++ ...|+
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 666666666666666666666665 44443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-20 Score=190.94 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.+...+.+..... + .+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~-p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS-M-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc-H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555443 2 456678888899999999999999999999875 457888999999999999999999999987
Q ss_pred CC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCCh---hhHHHH------------HHHHHhhCchhHHHHHH
Q 038206 197 LE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDG---YTFQSI------------TSACAGLATLSLGMWAH 258 (614)
Q Consensus 197 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~---~t~~~l------------l~a~~~~~~~~~~~~~~ 258 (614)
.+ .+..+|..+...|.+.|++++|...|+++....+.+. ..+..+ ...+...|+++.|...+
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33 3577899999999999999999999999987533333 455555 33488999999999999
Q ss_pred HHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 259 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 259 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
..+.+. .+.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++ ..
T Consensus 167 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-- 239 (450)
T 2y4t_A 167 DKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC-LK-- 239 (450)
T ss_dssp HHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--
T ss_pred HHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--
Confidence 999986 34567889999999999999999999999886 457899999999999999999999999998 44
Q ss_pred CCccHHH-HHHH------------HHHHhccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHH
Q 038206 336 FSPNSIT-FVGV------------LSACNHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVS 400 (614)
Q Consensus 336 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 400 (614)
..|+... +..+ ..+|.+.|++++|..+|+.+.+...-.|. ..++..+..++.+.|++++|.+.++
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455433 3333 67889999999999999999764221111 4578899999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 401 NM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 401 ~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
++ ...| +..+|..+..+| ...|++++|...++++++..|. +...+..+..+
T Consensus 320 ~a~~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 372 (450)
T 2y4t_A 320 EVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKA 372 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHH
Confidence 87 3345 688999999999 9999999999999999999999 88888888733
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=191.94 Aligned_cols=389 Identities=11% Similarity=-0.021 Sum_probs=298.0
Q ss_pred CcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHH
Q 038206 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIV 120 (614)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~ 120 (614)
....+...+..+++.. |+ + .++..+...|.+ |++++|...|+++.+ | +..+|..+...+.+. |++++|+.
T Consensus 21 ~~~~A~~~~~~al~~~---p~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~ 94 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK---ED-P-VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL-GKFADAMF 94 (514)
T ss_dssp CHHHHHHHHHHHHHHC---CC-H-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cHHHHHHHHHHHHhcC---cc-H-HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 3334467777777765 46 7 889999999999 999999999998754 3 567899999999999 99999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-----------------------------------C
Q 038206 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR-----------------------------------G 165 (614)
Q Consensus 121 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------------------------g 165 (614)
.|+++...+ + ++......++..+........+.+.+..+... .
T Consensus 95 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 95 DLSVLSLNG-D-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHSS-S-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHhcC-C-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 999999887 2 35555555555443322222222222111100 0
Q ss_pred C---------CCchhHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhcCC
Q 038206 166 L---------VSDVYINNSLIHFYAS---CGHLDLANKVFDNMLE----------------R-SLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 166 ~---------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~ 216 (614)
. +.+...+..+...+.. .|++++|..+|+++.+ + +..+|..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 0 1113334444444443 8999999999988744 1 34578889999999999
Q ss_pred hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHH
Q 038206 217 FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVF 296 (614)
Q Consensus 217 ~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (614)
+++|+..|+++... .|+..++..+..++...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|
T Consensus 253 ~~~A~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIEL-FPRVNSYIYMALIMADRNDSTEYYNYFDKALKL----DSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT----CTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhh-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc----CcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998876 344788888899999999999999999999874 3446778999999999999999999999
Q ss_pred hcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 297 ESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 297 ~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
++.. ..+..+|..+...|...|++++|+..|+++ ... .+.+..++..+...+...|++++|...++.+.+...-.
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA-KRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHH-HHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 8764 346788999999999999999999999998 442 12245678888889999999999999999987643333
Q ss_pred CC----hhHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 374 PV----LEHYGCLVDLLAR---AGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
++ ...+..+...|.+ .|++++|.+.+++. ...| +..+|..+...+ ...|++++|...++++.+..|. +.
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~-~~ 483 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK-LQQEDIDEAITLFEESADLART-ME 483 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSS-HH
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhccc-cH
Confidence 33 4488899999999 99999999999887 2334 577888888888 9999999999999999999988 66
Q ss_pred hhHHHH
Q 038206 445 GVYVLL 450 (614)
Q Consensus 445 ~~~~~l 450 (614)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-18 Score=181.59 Aligned_cols=385 Identities=8% Similarity=-0.001 Sum_probs=282.1
Q ss_pred HHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 038206 70 IYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKAC 145 (614)
Q Consensus 70 ~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 145 (614)
.+..+...|.+ |++++|...|+++.. .++..|..+...+.+. |++++|++.|+++.+.+ + .+..++..+..++
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST-GDLEKVIEFTTKALEIK-P-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-C-chHHHHHHHHHHH
Confidence 44555666666 888888888887654 3667788888888888 88888888888888876 2 3556777778888
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC--------------------------
Q 038206 146 AYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER-------------------------- 199 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------------------------- 199 (614)
...|++++|...++ ... ..|+. .+..+..+...+....|...++.+...
T Consensus 104 ~~~g~~~~A~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLS--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHh--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 88888888888885 332 22221 122233444445556666666655331
Q ss_pred -----------Chh---HHHHHHHHHHh--------cCChhHHHHHHHHhhhccCCCh-------hhHHHHHHHHHhhCc
Q 038206 200 -----------SLV---SWNVMIDAFVQ--------FGEFDSALKLFRRMQILFEPDG-------YTFQSITSACAGLAT 250 (614)
Q Consensus 200 -----------~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~pd~-------~t~~~ll~a~~~~~~ 250 (614)
+.. .+..+...+.. .|++++|+.+|+++....+.+. .++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 110 22222222221 2478899999998876533332 245566677788899
Q ss_pred hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038206 251 LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYF 327 (614)
Q Consensus 251 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (614)
++.+...+..+.+. .|+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|
T Consensus 259 ~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 259 LLDAQVLLQESINL-----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp HHHHHHHHHHHHHH-----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999986 3447788889999999999999999999775 346789999999999999999999999
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C
Q 038206 328 DRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM----P 403 (614)
Q Consensus 328 ~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 403 (614)
++. .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|+++ +
T Consensus 334 ~~a-~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 334 QKA-QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHH-HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 998 4432 223467888888999999999999999999763 3445778899999999999999999999886 1
Q ss_pred CC----CCHHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 404 MK----PDAVIWRSLLDACCKKH----------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 404 ~~----p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
.. .....+..+...+ ... |++++|...++++.+..|. +...+..+..+|.+.|++++|.+.+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1222344444555 666 9999999999999999998 889999999999999999999999999
Q ss_pred HHhC
Q 038206 470 MTDK 473 (614)
Q Consensus 470 m~~~ 473 (614)
..+.
T Consensus 488 al~~ 491 (537)
T 3fp2_A 488 SAIL 491 (537)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=170.83 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=136.9
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAH 160 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 160 (614)
|++++|.+++++++.|+ +|+.+..++.+. |++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~-g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQK-GMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCChH--HHHHHHHHHHHc-CCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88999999999997664 899999999999 9999999999642 6778999999999999999999998888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHH
Q 038206 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQS 240 (614)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ 240 (614)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7774 45678899999999999999999988864 77789999999999999999999999987 37899
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 038206 241 ITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRA 320 (614)
Q Consensus 241 ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 320 (614)
+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 154 LA~~L~~Lg~yq~AVea~~KA---------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 154 LASTLVHLGEYQAAVDGARKA---------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHH---------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHc---------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 999999999999999888766 267899999999999999999988887765 4444455688999999999
Q ss_pred HHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCCHHH
Q 038206 321 EAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP------VLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 321 ~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 394 (614)
++|+.+++.......-.-...|...++.+-.+.+++.+..+.|. ++-+++| +...|.-++-.|..-++++.
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999998762222222223444455555555666666666664 3235555 46678899999999999999
Q ss_pred HHHHHHhC
Q 038206 395 ALHLVSNM 402 (614)
Q Consensus 395 A~~~~~~m 402 (614)
|...+-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 98766554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-16 Score=158.16 Aligned_cols=313 Identities=10% Similarity=0.057 Sum_probs=203.0
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSL 176 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 176 (614)
|+..|..+...+... |++++|+..|+++.+.. + .+..++..+...+...|++++|...++.+++.. +.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAA-GQLADALSQFHAAVDGD-P-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 345667777788888 88888888888888775 2 345677777778888888888888888888764 3355677778
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHH------------HHHHHhcCChhHHHHHHHHhhhccCCChhhH
Q 038206 177 IHFYASCGHLDLANKVFDNMLERS------LVSWNVM------------IDAFVQFGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 177 i~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
..+|.+.|++++|...|+...+.+ ...|..+ ...+...|++++|++.|+++.
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---------- 147 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL---------- 147 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 888888888888888887774322 2233333 344445555555555555443
Q ss_pred HHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 038206 239 QSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFA 315 (614)
Q Consensus 239 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 315 (614)
+. .+.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|.
T Consensus 148 ------------------------~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 148 ------------------------EV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp ------------------------HH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred ------------------------Hh----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 32 22344556666666777777777777776554 235666777777777
Q ss_pred hcCCHHHHHHHHHHHhhhcCCCccH-HHH------------HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh--hHHH
Q 038206 316 LHGRAEAALKYFDRLVVEESFSPNS-ITF------------VGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EHYG 380 (614)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~~g~~p~~-~t~------------~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~ 380 (614)
..|++++|...|++. ... .|+. ..+ ..+...+.+.|++++|...++.+.+...-.+.. ..+.
T Consensus 200 ~~~~~~~A~~~~~~a-~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 200 QLGDHELSLSEVREC-LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276 (359)
T ss_dssp HHTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH-Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 777777777777766 331 2222 111 122445677788888888887776532111111 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
.+...|.+.|++++|.+.+++. ...| +..+|..+...+ ...|++++|...++++.+..|. +...+..+..++..
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 5667777888888888877766 2234 566777777777 7778888888888888888777 66666666555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=169.93 Aligned_cols=382 Identities=10% Similarity=0.027 Sum_probs=282.4
Q ss_pred CcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHH
Q 038206 45 SMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIV 120 (614)
Q Consensus 45 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~ 120 (614)
....+...+..+++.. |.+ + ..+..+...|.+ |++++|.+.|++... .+...|..+...+... |++++|+.
T Consensus 40 ~~~~A~~~~~~al~~~--p~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~ 114 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD--PNE-P-VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL-GNFTDAMF 114 (537)
T ss_dssp CCC-CHHHHHHHHHHC--TTC-H-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred cHHHHHHHHHHHHhhC--CCC-c-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc-CCHHHHHH
Confidence 3344477778877765 356 7 889999999999 999999999998754 4677888899999999 99999999
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC------CCCchh-----------------------
Q 038206 121 LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRG------LVSDVY----------------------- 171 (614)
Q Consensus 121 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~----------------------- 171 (614)
.|+.+ ... |+.. ...+..+...+....+...+..+.+.. ..|+..
T Consensus 115 ~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 115 DLSVL-SLN---GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHH-hcC---CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 99744 322 3322 112233334444566777777664421 111111
Q ss_pred -------HHHHHHHHHHhc--------CCHHHHHHHHhhcCCC--C--------hhHHHHHHHHHHhcCChhHHHHHHHH
Q 038206 172 -------INNSLIHFYASC--------GHLDLANKVFDNMLER--S--------LVSWNVMIDAFVQFGEFDSALKLFRR 226 (614)
Q Consensus 172 -------~~~~li~~~~~~--------g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~ 226 (614)
....+...+... |++++|..+|+++.+. + ..+|..+...+...|++++|+..|++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 268 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 233333333222 4789999999988443 2 22577777889999999999999999
Q ss_pred hhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCC
Q 038206 227 MQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRD 303 (614)
Q Consensus 227 m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~ 303 (614)
.... .|+..++..+...+...|+++.|...+..+.+. .+.+..++..+...|.+.|++++|...|++.. ..+
T Consensus 269 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 269 SINL-HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL----NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHH-CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhc-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 9875 566788888999999999999999999999986 34467789999999999999999999999875 346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHY 379 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~ 379 (614)
...|..+...|...|++++|++.|+++ .... +.+...+..+...+...|++++|...|+.+.+...-.+ ....+
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNET-KLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 788999999999999999999999998 4432 23346778888899999999999999999866321111 22334
Q ss_pred HHHHHHHHHc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 380 GCLVDLLARA----------GNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 380 ~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
..+...|.+. |++++|...|++. ...| +..+|..+...+ ...|++++|.+.++++.+..|. +...
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~ 498 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK-LQMEKIDEAIELFEDSAILART-MDEK 498 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC---CHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCC-cHHH
Confidence 5556778888 9999999999987 3334 577888888888 9999999999999999999988 4443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-16 Score=153.74 Aligned_cols=305 Identities=10% Similarity=0.009 Sum_probs=231.9
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAF 211 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 211 (614)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456667777888888888888888888765 34567788888888888888888888887632 3566788888888
Q ss_pred HhcCChhHHHHHHHHhhhccCC----ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcC
Q 038206 212 VQFGEFDSALKLFRRMQILFEP----DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG 287 (614)
Q Consensus 212 ~~~g~~~~A~~~~~~m~~~~~p----d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 287 (614)
.+.|++++|+..|++.... .| +...+..+... . ....+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~-----------------~---------~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS-NPSEQEEKEAESQLVKA-----------------D---------EMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHH-----------------H---------HHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhc-CCcccChHHHHHHHHHH-----------------H---------HHHHHHHHHHHHHHcc
Confidence 8888888888888887653 33 11111111110 0 0112334567889999
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHH
Q 038206 288 SLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFD 364 (614)
Q Consensus 288 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 364 (614)
++++|...|+++. ..+...|..+...|...|++++|+..+++. ... .+.+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA-SKL-KSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999875 347788999999999999999999999998 443 23455778888889999999999999999
Q ss_pred HHHHhcCCCCChhHHH------------HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHhcCchH
Q 038206 365 VMINEYNITPVLEHYG------------CLVDLLARAGNIDEALHLVSNM-PMKPD-A----VIWRSLLDACCKKHASVV 426 (614)
Q Consensus 365 ~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~~~~~~ 426 (614)
...+.. +.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..|..+...+ ...|+++
T Consensus 213 ~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF-SKDEKPV 289 (359)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-HHTTCHH
T ss_pred HHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH-HHccCHH
Confidence 997632 22333332 2366789999999999999987 33344 2 2344566677 8899999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.|...++++.+..|. ++.++..+..+|.+.|++++|...+++..+.
T Consensus 290 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 290 EAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999998 8999999999999999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=150.36 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=144.8
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMID 209 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 209 (614)
.+...+......+...|++++|.++++.+.+.. +.+...+..++..+.+.|++++|..+|+++.+ .+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344455555556666666666666666666554 22344455555556666666666666665521 24455666666
Q ss_pred HHHhcC-ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 210 AFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 210 ~~~~~g-~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
.+...| ++++|...|++.....+.+ ...+..+...|...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~--------------------------------------~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTY--------------------------------------GPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTC--------------------------------------THHHHHHHHHHHHHTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCcc--------------------------------------HHHHHHHHHHHHHccC
Confidence 666666 6666666666655432222 3344444445555555
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHH
Q 038206 289 LDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDV 365 (614)
Q Consensus 289 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 365 (614)
+++|...|++.. ..+...|..+...|...|++++|.+.+++. ... .+.+...+..+...+...|++++|...++.
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-l~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQA-LSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH-HTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 555555444433 112344444555555555555555555544 221 112234444444555555555555555555
Q ss_pred HHHhcC-------CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 366 MINEYN-------ITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 366 ~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
..+... .+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+ ...|++++|.+.++++.
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH-SLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH-HHHTCHHHHHHHHHTTT
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH-HHhccHHHHHHHHHHHH
Confidence 443210 0223445555666666666666666655554 1122 344555555555 55666666666666666
Q ss_pred HhcCCCCchhHHHHHHHH
Q 038206 437 ESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~ 454 (614)
+..|. +...+..+..++
T Consensus 298 ~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 298 GLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp TTCSC-CHHHHHHHHHHH
T ss_pred ccCCC-chHHHHHHHHHH
Confidence 66655 555555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-15 Score=145.28 Aligned_cols=285 Identities=13% Similarity=0.048 Sum_probs=219.3
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHH
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNS 175 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (614)
.+...+..+...+... |++++|+++|+++.+.. + .+...+..++..+...|++++|..++..+.+.. +.+..++..
T Consensus 20 ~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKD-P-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-C-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4666778888899999 99999999999999887 2 355667778888899999999999999999875 446778899
Q ss_pred HHHHHHhcC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCch
Q 038206 176 LIHFYASCG-HLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 176 li~~~~~~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~ 251 (614)
+...|...| ++++|...|++..+ .+...|..+...|...|++++|+..|++.....+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------- 156 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK------------------- 156 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-------------------
Confidence 999999999 99999999998743 3567899999999999999999999998875311
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.+...+..+...|...|++++|...|++.. ..+..+|..+...|...|++++|...++
T Consensus 157 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 157 -------------------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp -------------------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 223445556666777777777777776554 2356777778888888888888888887
Q ss_pred HHhhhcC--------CCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038206 329 RLVVEES--------FSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVS 400 (614)
Q Consensus 329 ~m~~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (614)
+. .... ...+..++..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.|+
T Consensus 218 ~a-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 218 DA-LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HH-HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HH-HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 76 3311 1233467788888888999999999999988763 23367788889999999999999999998
Q ss_pred hC-CCCC-CHHHHHHHHHHHHHhcCch
Q 038206 401 NM-PMKP-DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 401 ~m-~~~p-~~~~~~~ll~~~~~~~~~~ 425 (614)
+. ...| +...+..+..++....|+.
T Consensus 295 ~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 295 TALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHccCCCchHHHHHHHHHHHHHhCch
Confidence 87 5556 5566666666552344543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-14 Score=152.05 Aligned_cols=391 Identities=11% Similarity=0.059 Sum_probs=282.9
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHH
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFP 139 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~ 139 (614)
.+ . .+|..++.. .+ |+++.|+.+|+++.. | +...|...+..+.+. |++++|..+|+++.... |+...|.
T Consensus 11 ~~-~-~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~-~~~~~a~~~~~ral~~~---p~~~lw~ 83 (530)
T 2ooe_A 11 YD-L-DAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA-KNYDKVEKLFQRCLMKV---LHIDLWK 83 (530)
T ss_dssp TC-H-HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTC---CCHHHHH
T ss_pred CC-H-HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC---CChHHHH
Confidence 56 6 889999985 55 999999999999865 4 556799999999999 99999999999999876 7766676
Q ss_pred HHHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh-
Q 038206 140 FALKAC-AYLFAFSQGKQ----AHAHIFKR-GLVS-DVYINNSLIHFYAS---------CGHLDLANKVFDNMLE-RSL- 201 (614)
Q Consensus 140 ~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~f~~m~~-~~~- 201 (614)
..+... ...|+.+.|++ +|+..++. |..| +..+|...+....+ .|+++.|..+|++..+ |+.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 666533 34577777665 77766653 5544 45678888877665 7889999999998754 221
Q ss_pred --hHHHHHHHHH-------------HhcCChhHHHHHHHHhh------hc----cCCCh--------hhHHHHHHHHHhh
Q 038206 202 --VSWNVMIDAF-------------VQFGEFDSALKLFRRMQ------IL----FEPDG--------YTFQSITSACAGL 248 (614)
Q Consensus 202 --~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~----~~pd~--------~t~~~ll~a~~~~ 248 (614)
..|....... .+.+++.+|..++.+.. .. ++|+. ..|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2343322210 12456777877777632 11 24431 2333333322221
Q ss_pred ----Cch----hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh-------cCCHH-------HHHHHHhcCCC---C-
Q 038206 249 ----ATL----SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK-------CGSLD-------IARQVFESMPK---R- 302 (614)
Q Consensus 249 ----~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~m~~---~- 302 (614)
++. ..+..+++..++. .+.+..+|..+...+.+ .|+++ +|..+|++..+ |
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred CccCCcchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 122 2556678877775 34467788888888876 69987 89999987653 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHY 379 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 379 (614)
+...|..++..+.+.|+.++|..+|++. .. +.|+. ..|......+.+.|++++|..+|+...+. .| +...|
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~ 393 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRL-LA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVY 393 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHH-hC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHH
Confidence 6889999999999999999999999998 54 45653 46888888888899999999999999752 33 33333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch----hHHHHHH
Q 038206 380 GCLVDL-LARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG----VYVLLSR 452 (614)
Q Consensus 380 ~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~ 452 (614)
.....+ +...|+.++|.++|++. ...| +...|..++... ...|+.+.|..+|+++++..+. ++. .|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~-~~~g~~~~Ar~~~~~al~~~~~-~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFERVLTSGSL-PPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHSCCS-CGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH-HhCCCHhhHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 332222 34689999999999976 3334 578999999988 9999999999999999998765 333 6777888
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 038206 453 VYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.....|+.+.+.++.+++.+.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999999888653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=152.55 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=192.8
Q ss_pred cCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHH
Q 038206 183 CGHLDLANK-VFDNMLE--R-----SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLG 254 (614)
Q Consensus 183 ~g~~~~A~~-~f~~m~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~ 254 (614)
.|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++....+.+..++..+..++...|+++.|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555655 5554311 1 2344556666666666666666666666554444555566666666666666666
Q ss_pred HHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHHHHHH---------------HHHHHHh
Q 038206 255 MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLTSWNS---------------IILGFAL 316 (614)
Q Consensus 255 ~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~~~~~---------------li~~~~~ 316 (614)
...+..+.+. .+.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+..
T Consensus 118 ~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666654 233455666667777777777777777765431 1 1111111 2333348
Q ss_pred cCCHHHHHHHHHHHhhhc-CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 317 HGRAEAALKYFDRLVVEE-SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
.|++++|+..|+++ ... .-.++..++..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 194 ~~~~~~A~~~~~~a-~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 194 DSLFLEVKELFLAA-VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHH-HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHH-HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999998 442 22224688888999999999999999999998763 234678899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHhhcCChhh
Q 038206 396 LHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-----------SGVYVLLSRVYASARRWND 462 (614)
Q Consensus 396 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 462 (614)
.+.|+++ ...| +..+|..+...+ ...|++++|...++++++..|. + ..+|..+..+|...|++++
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISC-INLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999987 3334 577888888888 9999999999999999998877 4 6789999999999999999
Q ss_pred HHHHHHH
Q 038206 463 VGLVRKL 469 (614)
Q Consensus 463 a~~~~~~ 469 (614)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9998763
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=177.86 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=116.7
Q ss_pred CCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 269 LVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.|||+.|+.++|.++|++| ...|+.||.+
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G~~PDvv 201 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLTPDLL 201 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCcHH
Confidence 44456699999999999999999999997753 689999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 342 TFVGVLSACNHRGM-VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 342 t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
||+++|.++++.|+ .++|.++|++|.+ .|+.||..+|++++....+.+-++...++...+
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999997 5789999999987 499999999999999888876555555554444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-15 Score=150.63 Aligned_cols=117 Identities=8% Similarity=-0.111 Sum_probs=74.4
Q ss_pred CCchHHHH-HHHHHHHcCCCCC--CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 038206 113 DAKPQAIV-LFQRMIEQGNVLP--DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLA 189 (614)
Q Consensus 113 ~~~~~A~~-~~~~m~~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 189 (614)
|++++|++ .|++........| +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 66667766 6665443321111 34556667777777777777777777777654 34566677777777777888887
Q ss_pred HHHHhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 190 NKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 190 ~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
...|++. ...+..+|..+...|...|++++|+..|+++...
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777765 2235667777888888888888888888877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-17 Score=172.52 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVV---EESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG 380 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 380 (614)
..|||+||.+||+.|+.++|.++|.+| . ..|+.||.+||++||.+|++.|++++|.++|++|.+ .|+.||..+||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM-~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVH-HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH-HHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHHH
Confidence 469999999999999999999999887 4 458999999999999999999999999999999976 59999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC------chhHHHH
Q 038206 381 CLVDLLARAGNI-DEALHLVSNM---PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC------SGVYVLL 450 (614)
Q Consensus 381 ~li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 450 (614)
+||+++++.|+. ++|.++|++| ++.||..+|++++.++ .+. ..++..+++ .-+..|+ ..+...|
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~-eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE-DRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH-HHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh-hHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999984 7899999999 8999999999999887 433 333333333 1122222 3445678
Q ss_pred HHHHhhcC
Q 038206 451 SRVYASAR 458 (614)
Q Consensus 451 ~~~~~~~g 458 (614)
.+.|++.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 88888766
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=159.05 Aligned_cols=250 Identities=12% Similarity=0.086 Sum_probs=109.6
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 182 SCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+...
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6788888888888886554 8888888888888888888888653 57778888888888888888888877776
Q ss_pred HHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 262 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
.+. .+++.+.+.|+.+|.|+|+++++.++++. |+..+|+.+...|...|++++|..+|..+ .
T Consensus 88 rk~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 88 RKK-----ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------T
T ss_pred HHh-----CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 653 34577888899999999999998888763 77789999999999999999999999876 3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 421 (614)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..| .+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Y-ek 219 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY-QD 219 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHH-HH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHH-HH
Confidence 6888899999999999999888876 26788899999999999999997766665544544 44677788 88
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc--CChhhHHHHH
Q 038206 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA--RRWNDVGLVR 467 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~ 467 (614)
.|.+++|..+++..+..++. ....|.-|..+|++- |+..+..+.|
T Consensus 220 ~G~~eEai~lLe~aL~le~a-h~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCcHH-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999998888866 778888877777654 4455555544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=140.03 Aligned_cols=242 Identities=10% Similarity=0.051 Sum_probs=169.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHh
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCK 285 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~ 285 (614)
+..+|...|++++|+..++.. -+|+..++..+...+...++.+.+.+.++.+... +..| +...+..+...|..
T Consensus 40 l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~---~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREMSR---SVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS---CCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHH
Confidence 344444444444444333221 2233334444444444444444444444444433 4334 45566777889999
Q ss_pred cCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH---HHHHHHHhccCCHHHHHHH
Q 038206 286 CGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF---VGVLSACNHRGMVSEGRDY 362 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~ 362 (614)
.|++++|.+.|++ ..+...+..+...|.+.|+.++|.+.|+++ ... .|+.... ...+..+...|++++|..+
T Consensus 114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~-~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKM-QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999998 568889999999999999999999999999 554 4664322 1233444566999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhc
Q 038206 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVL-SEEVAKQVIESE 439 (614)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~-a~~~~~~~~~~~ 439 (614)
|+.+.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..+|..++..+ ...|+.++ +.++++++++..
T Consensus 189 ~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~-~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 189 FQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS-QHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC
Confidence 9999874 4568889999999999999999999999986 4445 677898898888 77888765 689999999999
Q ss_pred CCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 440 GGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
|+ ++.+ .+...+.+.++++..-|
T Consensus 266 P~-~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 266 RS-HPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TT-CHHH----HHHHHHHHHHHHHHHHH
T ss_pred CC-ChHH----HHHHHHHHHHHHHHHHc
Confidence 99 6644 34455666666655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-15 Score=149.92 Aligned_cols=263 Identities=9% Similarity=-0.042 Sum_probs=194.1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+...|..+...+.+.|++++|+..|+++....+.+..++..+..++...|+++.|...+..+.+. .+.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHHHH
Confidence 34456677777777777777777777776554455666777777777777777777777777765 23346677888
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK--RD-----------LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
...|.+.|++++|...|+++.+ |+ ...+..+...+...|++++|++.|+++.....-.++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 8888888888888888877652 21 2234455778889999999999999983332222257788888
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+ ...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC-INLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHCCC
Confidence 89999999999999999999763 3446888999999999999999999999887 3345 478888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhhcCChhhHHHHHHH
Q 038206 425 VVLSEEVAKQVIESEGGI-----------CSGVYVLLSRVYASARRWNDVGLVRKL 469 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 469 (614)
+++|...++++++..|.. +...|..+..++...|+.+.+.++.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999887651 357788999999999999998887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=146.89 Aligned_cols=227 Identities=12% Similarity=-0.005 Sum_probs=129.4
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 210 (614)
+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|++.. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457777777778888888888888887765 3456777888888888888888888887763 2356778888888
Q ss_pred HHhcCChhHHHHHHHHhhhccCCCh----------hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCC-ccccHHHHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDG----------YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLV-TDVLVNNSL 279 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~----------~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l 279 (614)
|.+.|++++|+..|+++....+.+. ..+..+...+...|+++.|...+..+.+. ... .+..++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~l 219 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ---NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH---SCSSCCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---CcCccCHHHHHHH
Confidence 8888888888888888765311111 11122234444555555555555555544 111 134455555
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~ 355 (614)
...|.+.|++++|.+.|++.. ..+..+|+.+...|...|++++|+..|++. ... .|+ ..++..+..+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA-LEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc--CCCchHHHHHHHHHHHHCCC
Confidence 555555555555555555443 224445555555555555555555555554 221 222 3444444455555555
Q ss_pred HHHHHHHHHHHH
Q 038206 356 VSEGRDYFDVMI 367 (614)
Q Consensus 356 ~~~a~~~~~~~~ 367 (614)
+++|...|+.+.
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-12 Score=134.85 Aligned_cols=336 Identities=13% Similarity=0.044 Sum_probs=197.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cC
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----CG 184 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g 184 (614)
+++++|+..|++..+.| +...+..+-..+.. .++.++|.+.+....+.| +...+..|-.+|.. .+
T Consensus 57 ~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 44444444444444432 22233333333433 444444444444444433 23333444444444 44
Q ss_pred CHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh----hCchhHHH
Q 038206 185 HLDLANKVFDNMLER-SLVSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAG----LATLSLGM 255 (614)
Q Consensus 185 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~~~ 255 (614)
+.++|...|+...+. +...+..|...|.. .+++++|++.|++..+. .+...+..+-..+.. .++.+.+.
T Consensus 130 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 455555554443222 33344444444444 44455555555444332 233333334444433 44555555
Q ss_pred HHHHHHHHhccCCCCccccHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038206 256 WAHAYILRHCDHSLVTDVLVNNSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKY 326 (614)
Q Consensus 256 ~~~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l 326 (614)
..+....+. + +...+..|..+|.. .++.++|...|++..+ .+...+..+-..|.. .++.++|++.
T Consensus 208 ~~~~~a~~~---~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATS---G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 555554443 3 33456666666665 6778888888876543 355666666666766 7788888888
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHH
Q 038206 327 FDRLVVEESFSPNSITFVGVLSACNHR-----GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG---NIDEALHL 398 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~ 398 (614)
|++. .+.| +...+..+-..+... ++.++|..+|+...+. + +...+..|..+|.+.| ++++|.+.
T Consensus 282 ~~~a-~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 282 YRKS-AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHH-HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHH-HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 8877 4443 233444455555555 7888888888887652 2 4456667777777756 67888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHH
Q 038206 399 VSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLM 470 (614)
Q Consensus 399 ~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 470 (614)
|++.-...+...+..|-..+ .. .+++++|...+++..+.+ ++..+..|..+|.+ .++.++|...+++.
T Consensus 354 ~~~a~~~~~~~a~~~Lg~~y-~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 354 FRKAAAKGEKAAQFNLGNAL-LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 87762234677777777777 66 678888888888888765 45777788888887 78888888888888
Q ss_pred HhCCC
Q 038206 471 TDKGV 475 (614)
Q Consensus 471 ~~~g~ 475 (614)
.+.|.
T Consensus 430 ~~~~~ 434 (490)
T 2xm6_A 430 STNDM 434 (490)
T ss_dssp HHHHC
T ss_pred HHCCC
Confidence 77663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.4e-13 Score=140.22 Aligned_cols=396 Identities=8% Similarity=0.052 Sum_probs=277.2
Q ss_pred ChhhHHHHHHhc--cCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--CChhhHHHHHH
Q 038206 32 NHSSLLSSLTEC--KSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--PNSFTWNTLIR 106 (614)
Q Consensus 32 ~~~~~~~~l~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~~~~~~~~li~ 106 (614)
|...+..++... +....++.++..+++. .|.+ . .+|..++..+.+ |+++.|+++|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~-~-~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSS-G-RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTC-H-HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 444565555532 2233346777777664 3356 6 899999999999 999999999999865 78778877775
Q ss_pred HH-HcCCCCchHHHH----HHHHHHHc-CCCCCCcchHHHHHHHHHc---------cCCcHHHHHHHHHHHHhCCCCchh
Q 038206 107 AC-ARSVDAKPQAIV----LFQRMIEQ-GNVLPDKHTFPFALKACAY---------LFAFSQGKQAHAHIFKRGLVSDVY 171 (614)
Q Consensus 107 ~~-~~~~~~~~~A~~----~~~~m~~~-~~~~p~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~ 171 (614)
-. ... |+.++|.+ +|++.... |..+++...|...+..... .|+++.|..+|+..++....+...
T Consensus 88 ~~~~~~-~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETK-GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHT-TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHc-cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 33 345 77777765 77776653 4441344566666665543 688999999999998731111123
Q ss_pred HHHHHHHHH-------------HhcCCHHHHHHHHhhc------C-------CCC--------hhHHHHHHHHHHhc---
Q 038206 172 INNSLIHFY-------------ASCGHLDLANKVFDNM------L-------ERS--------LVSWNVMIDAFVQF--- 214 (614)
Q Consensus 172 ~~~~li~~~-------------~~~g~~~~A~~~f~~m------~-------~~~--------~~~~~~li~~~~~~--- 214 (614)
.|....... .+.++++.|..++..+ . .|+ ...|...+.-...+
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443333211 1235567777766641 1 112 24666666443332
Q ss_pred -CCh----hHHHHHHHHhhhccCCChhhHHHHHHHHHh-------hCchh-------HHHHHHHHHHHhccCCCCccccH
Q 038206 215 -GEF----DSALKLFRRMQILFEPDGYTFQSITSACAG-------LATLS-------LGMWAHAYILRHCDHSLVTDVLV 275 (614)
Q Consensus 215 -g~~----~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~-------~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~ 275 (614)
++. ++|+.+|++.....+-+...|......+.. .|+++ .+..+++...+. -.+.+...
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~~~~l 323 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKKNMLL 323 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSSCHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCcccHHH
Confidence 222 377888988877655567777777777665 68877 888888888862 23445789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHH-
Q 038206 276 NNSLIDMYCKCGSLDIARQVFESMP--KR-DL-TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSA- 349 (614)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a- 349 (614)
|..++..+.+.|++++|..+|+++. .| +. ..|...+..+.+.|+.++|.++|++. ... .|+ ...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A-l~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA-RED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH-Hhc--cCCchHHHHHHHHHH
Confidence 9999999999999999999999875 34 33 58999999999999999999999987 443 333 2333322222
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHhcC
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD--AVIWRSLLDACCKKHA 423 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~~~ 423 (614)
+...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+... ..+|
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e-~~~G 477 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIG 477 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH-HHSS
T ss_pred HHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcC
Confidence 335899999999999988743 336788999999999999999999999987 33332 55898888887 8999
Q ss_pred chHHHHHHHHHHHHhcCC
Q 038206 424 SVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.+..+++++.+..|.
T Consensus 478 ~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHCch
Confidence 999999999999988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-12 Score=138.05 Aligned_cols=365 Identities=8% Similarity=-0.036 Sum_probs=286.3
Q ss_pred CCchHHHHHHHHHHHhc-----CChhHHHHHHhcCCC-CChhhHHHHHHHHHc----CCCCchHHHHHHHHHHHcCCCCC
Q 038206 64 QHKTLLIYSRIIHFASF-----ADLDYAFRVFYQIEN-PNSFTWNTLIRACAR----SVDAKPQAIVLFQRMIEQGNVLP 133 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-----g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~~~~~~~A~~~~~~m~~~~~~~p 133 (614)
.+ + ..+..|-.+|.. ++++.|...|.+..+ .+...+..+-..|.. . +++++|++.|++....|
T Consensus 37 g~-~-~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 37 GE-A-KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVP-QDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp TC-H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT----
T ss_pred CC-H-HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC----
Confidence 34 5 666666666654 789999999987644 467778888888887 7 99999999999998865
Q ss_pred CcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHH
Q 038206 134 DKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----CGHLDLANKVFDNMLE-RSLVSW 204 (614)
Q Consensus 134 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~~~~~~ 204 (614)
+...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44566677777776 789999999999999876 56778888888887 7899999999988743 467788
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh----hCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 205 NVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAG----LATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 205 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
..+...|.+ .+++++|++.|++.... .+...+..+...+.. .++.+.+...+....+. + +...+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~ 258 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---G---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---T---CHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHH
Confidence 899999988 89999999999988754 455666666666665 78899999999888765 4 34567
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 277 NSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFALH-----GRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 277 ~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
..|..+|.. .++.++|...|++..+ .+...+..+...|... ++.++|+..|++. .+.+ +...+..+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~l 334 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS-AEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH-HHTT---CHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH-HhcC---CHHHHHHH
Confidence 778888888 8999999999998764 4677888888888887 8999999999998 6554 33455555
Q ss_pred HHHHhccC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038206 347 LSACNHRG---MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACC 419 (614)
Q Consensus 347 l~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 419 (614)
-..+...| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|-..+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y- 409 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIY- 409 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-
Confidence 55665545 789999999999763 367788889999998 899999999999873234677888888777
Q ss_pred Hh----cCchHHHHHHHHHHHHhcCCC--CchhHHHHHHHHh
Q 038206 420 KK----HASVVLSEEVAKQVIESEGGI--CSGVYVLLSRVYA 455 (614)
Q Consensus 420 ~~----~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 455 (614)
.. .++.++|...|+++.+.++++ +......|..++.
T Consensus 410 ~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 410 YYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 76 799999999999999999651 3344444444433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-13 Score=135.23 Aligned_cols=256 Identities=12% Similarity=-0.025 Sum_probs=134.3
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcC
Q 038206 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFG 215 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g 215 (614)
......+...|++++|..+++.+.+.. +.+..++..+...|.+.|++++|...|++.. ..+..+|..+...|...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 333344444444444444444444432 2233444444445555555555555554431 123445555555555556
Q ss_pred ChhHHHHHHHHhhhccCCChhhHHHH--------------HH-HHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHH
Q 038206 216 EFDSALKLFRRMQILFEPDGYTFQSI--------------TS-ACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~~~pd~~t~~~l--------------l~-a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 280 (614)
++++|++.|+++....+.+...+..+ .. .+...|+++.+...+..+.+. .+.+..++..+.
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la 179 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPNDAQLHASLG 179 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH----STTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCCCHHHHHHHH
Confidence 66666655555544311122222111 11 244555666666666666554 223455666666
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 281 DMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
..|.+.|++++|.+.|+++. ..+..+|..+...|...|++++|++.|++. .... +.+..++..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA-LDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 67777777777777666553 234566666666777777777777777665 3321 223455566666666667777
Q ss_pred HHHHHHHHHHHhcCCC----------CChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 358 EGRDYFDVMINEYNIT----------PVLEHYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
+|...++.+.+...-. .+...+..+..+|.+.|+.++|..++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 7777666665421110 0245566666666666666666666654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-14 Score=139.99 Aligned_cols=273 Identities=10% Similarity=-0.010 Sum_probs=181.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh
Q 038206 171 YINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG 247 (614)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~ 247 (614)
..+..+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|...|+++....+.+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 344556666677777777777776652 22455666677777777777777777776655433344445555555555
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIIL--GFALHGRAEAALK 325 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~--~~~~~g~~~~A~~ 325 (614)
.|+++.|...+..+.+. .+.+...+..+.... ++......+.. .+...|++++|.+
T Consensus 102 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS----QPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TTCHHHHHHHHHHHHHT----STTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh----CCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 55555555555555543 111111111110000 00001111112 2667788889999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM 404 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 404 (614)
.++++ .... +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|++. ..
T Consensus 160 ~~~~~-~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 160 LLHAA-LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHH-HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99887 4432 235577778888888999999999999988763 2345778889999999999999999999886 33
Q ss_pred CC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 405 KP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----------CSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 405 ~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
.| +..+|..+...+ ...|++++|.+.++++.+..|.. +...+..+..+|.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSY-SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 577888888888 99999999999999999988773 4677889999999999999999988643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-12 Score=139.59 Aligned_cols=369 Identities=12% Similarity=0.096 Sum_probs=233.8
Q ss_pred hhhhhhCCCCCCcchHHHHHHHhhhcCC-CCChhhHHH-HHHhccCcchHHHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 038206 2 AVAIVQGGPPTPQTHSHSIFNNNRNEGS-FNNHSSLLS-SLTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRIIHFAS 79 (614)
Q Consensus 2 i~~~~~~g~~~~a~~al~~~~~m~~~g~-~p~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~li~~~~ 79 (614)
+.+|...|.+.+ |++++++....+- .-+....-. ++....+. +....-..+.+.+ . +....+...+.
T Consensus 992 vKaf~~aglp~E---aieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~------~d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNE---LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-N------YDAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHH---HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-h------ccHHHHHHHHH
Confidence 467888899986 6788888874321 001111111 22211111 2233333333332 1 22344555566
Q ss_pred c-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 038206 80 F-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158 (614)
Q Consensus 80 ~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 158 (614)
. |.+++|..+|++... .....+.++. .. +++++|.++.++. -+..+|..+.+++...|++++|...|
T Consensus 1061 ~lglyEEAf~IYkKa~~-~~~A~~VLie---~i-~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-NTSAVQVLIE---HI-GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-HHHHHHHHHH---HH-hhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6 888888888888752 2223344443 33 7788888887644 24567788888888888888888887
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChh
Q 038206 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGY 236 (614)
Q Consensus 159 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~ 236 (614)
... .|...|..++..+.+.|++++|.+.+....+ ++....+.++.+|++.+++++. +-|- -.|+..
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~fI-----~~~n~a 1196 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEFI-----NGPNNA 1196 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHHH-----hCCCHH
Confidence 543 4666777788888888888888888865422 3333344588888888877753 3331 145556
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFAL 316 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 316 (614)
.+..+-..|...|+++.|..++..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|..
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhh
Confidence 6777888888888888888888764 25788888888888888888888776 456777777777777
Q ss_pred cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHc--CCHH
Q 038206 317 HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARA--GNID 393 (614)
Q Consensus 317 ~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--g~~~ 393 (614)
.|++..|...... +..+...+..++..|.+.|.+++|..+++... ++.| ....|+-|..+|++- +++.
T Consensus 1263 ~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 7777777665532 23344445577777778888888888776554 3333 344555566666543 4555
Q ss_pred HHHHHHHhC-CCCC------CHHHHHHHHHHHHHhcCchHHHH
Q 038206 394 EALHLVSNM-PMKP------DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 394 ~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
++.++|..- .+.| +...|.-++--| .+.|+++.|.
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY-~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLY-DKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHH-HhcccHHHHH
Confidence 555555432 3222 455677777777 7777777776
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-12 Score=137.12 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHH-HHHHcCCHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVL--EHYGCLVD-LLARAGNIDEA 395 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A 395 (614)
..++|...|++. .... +.+..++..+...+...|++++|...|+...+. ...|.. ..+..+.. .+...|+.++|
T Consensus 315 ~~~~A~~~~~~a-~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A 391 (472)
T 4g1t_A 315 LIGHAVAHLKKA-DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKA 391 (472)
T ss_dssp HHHHHHHHHHHH-HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHH
T ss_pred hHHHHHHHHHHH-hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 356788888776 3321 223356777888899999999999999988752 322221 12223332 23467899999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 396 LHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 396 ~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
+..|++. .+.|+...+.. ..+.+.+++++.++.+|. ++.+|..|..+|...|++++|.+.+++..+.|
T Consensus 392 i~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 392 IHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9998876 56676543332 234456777888888999 89999999999999999999999999988765
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
-.
T Consensus 461 ~~ 462 (472)
T 4g1t_A 461 SL 462 (472)
T ss_dssp --
T ss_pred CC
Confidence 43
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-11 Score=133.72 Aligned_cols=379 Identities=13% Similarity=0.052 Sum_probs=276.6
Q ss_pred ChhhHHHHHHhccCcchHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC-CC-----hhhHHH
Q 038206 32 NHSSLLSSLTECKSMSQLKQIHAQALRTALPQ-QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN-PN-----SFTWNT 103 (614)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~-~~-----~~~~~~ 103 (614)
|...|+.+|......+ +++.++.....++. .+ + .--...+..|.. |.+.+|.+++++..- |+ ...-|.
T Consensus 952 d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~-P-eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 952 DPELWGSVLLESNPYR--RPLIDQVVQTALSETQD-P-EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred CHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccC-H-HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 5566666664432111 45555554444321 23 3 334666777777 899999999888753 22 244556
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 104 LIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 104 li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
++.+..+. +..+..+..++.. .....-+...|...|.+++|.++|+... ......+.++ -..
T Consensus 1028 Li~tAIka--D~~Rv~eyI~kLd--------~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i 1089 (1630)
T 1xi4_A 1028 LILTAIKA--DRTRVMEYINRLD--------NYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHI 1089 (1630)
T ss_pred HHHHHHHh--ChhhHHHHHHHhh--------hccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHH
Confidence 66666654 3455555554443 1223446677888999999999998852 1222223333 277
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 184 GHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 184 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
|++++|.++.++.. +..+|..+..++.+.|++++|+..|.+. -|...|..++.+|.+.|+++++.+.+....+
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999998774 4678999999999999999999999765 4677888899999999999999999998887
Q ss_pred hccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 264 HCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 264 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. . +++.+.+.++.+|+|.+++++..... ..++...|..+...|...|++++|..+|... ..|
T Consensus 1163 ~---~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny 1224 (1630)
T 1xi4_A 1163 K---A--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 1224 (1630)
T ss_pred h---c--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHH
Confidence 5 3 44445556999999999998655543 4567778888889999999999999999865 378
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcC
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHA 423 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~ 423 (614)
..+..++.+.|++++|.+.++.. .+..+|..+..++...|++..|......+ ..+...+..++..| ...|
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yY-e~~G 1294 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYY-QDRG 1294 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHH-HHcC
Confidence 89999999999999999988766 34578888888888999999998877653 34555666888888 9999
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc--CChhhHHHHHH
Q 038206 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA--RRWNDVGLVRK 468 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 468 (614)
.+++|+.+++..+.+++. +...|.-|...|++- ++..++.+.|.
T Consensus 1295 ~feEAI~LlE~aL~Lera-H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERA-HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred CHHHHHHHHHHHhccChh-HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999988877 777887777777654 45555555554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=127.60 Aligned_cols=245 Identities=9% Similarity=0.059 Sum_probs=196.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhccCCCh--hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHh
Q 038206 208 IDAFVQFGEFDSALKLFRRMQILFEPDG--YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCK 285 (614)
Q Consensus 208 i~~~~~~g~~~~A~~~~~~m~~~~~pd~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~ 285 (614)
|.-....|++.+|+..+++.... .|+. .....+.+++...|+.+.+...++. .-+|+...+..+...|..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcC
Confidence 34456689999999988876433 3332 3456678899999999888864422 345677888999999999
Q ss_pred cCCHHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHH
Q 038206 286 CGSLDIARQVFESMP----KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 360 (614)
.|+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999863 24 566777788999999999999999963 456678888889999999999999
Q ss_pred HHHHHHHHhcCCCCChhH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 361 DYFDVMINEYNITPVLEH---YGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
+.++.+.+. .|+... ...++..+...|++++|..+|+++ ....+...|+.+..++ ...|++++|+..++++
T Consensus 151 ~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH-MAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 999999764 355321 233445555669999999999988 2235788899999888 9999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhhcCChhh-HHHHHHHHHh
Q 038206 436 IESEGGICSGVYVLLSRVYASARRWND-VGLVRKLMTD 472 (614)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 472 (614)
++..|. ++.++..++..+...|+.++ +.++++++.+
T Consensus 227 l~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 227 LDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999 99999999999999999976 5688888765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-11 Score=127.67 Aligned_cols=358 Identities=8% Similarity=-0.047 Sum_probs=230.1
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCC-----------C-CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC-----C
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIE-----------N-PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG-----N 130 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~-----~ 130 (614)
.+||.|-..|.. |++++|++.|++.. . ...++|+.+-..|... |++++|...|++..+.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhcccc
Confidence 789999888888 99999999987642 1 2456899999999999 99999999998876531 1
Q ss_pred CCCC-cchHHHHHHHHHc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCCHHHHHHHHhhc---CCCCh
Q 038206 131 VLPD-KHTFPFALKACAY--LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF---YASCGHLDLANKVFDNM---LERSL 201 (614)
Q Consensus 131 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~f~~m---~~~~~ 201 (614)
..++ ..++.....++.. .+++++|...|+..++... .++..+..+..+ +...++.++|.+.|++. ...+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1012 2345444444443 4578999999999998752 345555555544 34567777888887765 23355
Q ss_pred hHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHH
Q 038206 202 VSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNN 277 (614)
Q Consensus 202 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 277 (614)
..+..+...+.. .|++++|.+.+++.....+.+...+..+...+...|+.+.+...+..+.+. .+.+..++.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~ 285 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHC 285 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHH
Confidence 666666655554 467889999999887665667778888999999999999999999999986 334456677
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC
Q 038206 278 SLIDMYCKC-------------------GSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEES 335 (614)
Q Consensus 278 ~li~~y~~~-------------------g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 335 (614)
.+...|... +..+.|...|++.. ..+..+|..+...|...|++++|++.|++. ....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka-L~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE-FSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH-HHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH-HhcC
Confidence 776666432 23556777776554 335567888999999999999999999988 5543
Q ss_pred CCccHH--HHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHH
Q 038206 336 FSPNSI--TFVGVLS-ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVI 410 (614)
Q Consensus 336 ~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 410 (614)
..|... .+..+.. .....|+.++|...|....+ +.|+........ ..+.++++.. ...| +..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHH
Confidence 333321 2222222 24578999999999998864 455543322222 2233333332 1223 5678
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
|..|-..+ ...|++++|++.|+++++.++. ++.++
T Consensus 433 ~~~LG~~~-~~~g~~~~A~~~y~kALe~~~~-~p~a~ 467 (472)
T 4g1t_A 433 LHVLAFLQ-ELNEKMQQADEDSERGLESGSL-IPSAS 467 (472)
T ss_dssp HHHHHHHH-HHHHHCC---------------------
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-CCcHh
Confidence 88888888 9999999999999999999877 44443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=117.62 Aligned_cols=189 Identities=12% Similarity=0.052 Sum_probs=142.6
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R----D----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
.+..++..+...|...|++++|...|++..+ | + ..+|..+...|...|++++|++.|++. .. ..|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~--~~~~~ 112 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LT--EHRTA 112 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCCCH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHH-Hh--cCchh
Confidence 4556667777777777777777777766542 1 1 467778888888888888888888877 44 23442
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~ 418 (614)
..+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.+++. ... .+..+|..+...+
T Consensus 113 -------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 183 (258)
T 3uq3_A 113 -------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL 183 (258)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 235556778888888888764 22335667788888888899999998888876 223 3577788888888
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
...|++++|...++++++..|. +...|..+..+|.+.|++++|...+++..+.
T Consensus 184 -~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 184 -AKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8889999999999999998888 7888888999999999999999998887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-12 Score=115.80 Aligned_cols=194 Identities=13% Similarity=-0.016 Sum_probs=152.2
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHH
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVG 345 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ 345 (614)
+++...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|+..|++. .. ..|+ ...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTL-VA--RTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCcHHHHHH
Confidence 4567788888999999999999999998765 346788999999999999999999999987 44 3454 466777
Q ss_pred HHHHHhcc-----------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038206 346 VLSACNHR-----------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRS 413 (614)
Q Consensus 346 ll~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 413 (614)
+..++... |++++|...++...+. -+-+...+..+...|...|++++|++.|++. ....+...|..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 77788888 9999999999999763 2235778889999999999999999999886 21268888999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+...+ ...|++++|...++++++..|. +...+..+..++.+.|++++|...+++.
T Consensus 157 la~~~-~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELY-LSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 98888 9999999999999999999999 8999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-11 Score=116.02 Aligned_cols=222 Identities=13% Similarity=0.040 Sum_probs=147.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhcCChhHHHHHHHHhhhc---cCCChhhHHHHHHHH
Q 038206 171 YINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL---FEPDGYTFQSITSAC 245 (614)
Q Consensus 171 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~pd~~t~~~ll~a~ 245 (614)
..+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++.... ..|+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY---------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch----------
Confidence 4455566666666666666666665411 45556666666666666666666666665432 11110
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A 323 (614)
+....++..+...|.+.|++++|...|++.. .|+. ..+...|++++|
T Consensus 76 ------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 76 ------------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHH
Confidence 0013456666777777777777777776654 2332 335556778888
Q ss_pred HHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 324 LKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 324 ~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...++++ .. ..|+ ...+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.|++.
T Consensus 125 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAE-AY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHH-HH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888876 43 2333 355666777778888888888888888653 2345677888888888888888888888776
Q ss_pred -CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 403 -PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 403 -~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
...| +...|..+...+ ...|+++.|...++++.+..
T Consensus 200 l~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQ-IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhC
Confidence 2234 467777777777 88889999999999888877
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-12 Score=119.64 Aligned_cols=215 Identities=9% Similarity=-0.082 Sum_probs=141.2
Q ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHH
Q 038206 238 FQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGF 314 (614)
Q Consensus 238 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 314 (614)
+..+...+...|+++.|...+..+.+. .+.+..++..+...|...|++++|...|++.. ..+..+|..+...|
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 333344444444444444444444443 22345667777777777888888877777665 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.+.|++++|++.|+++ .. ..|+.......+..+...|++++|...+...... .+++...+ .++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a-~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAF-YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHH
Confidence 8888888888888877 44 3455544444555556678888888888777653 33444444 36667777788888
Q ss_pred HHHHHHhC-CCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 395 ALHLVSNM-PMKPD-----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 395 A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
|.+.+++. ...|+ ..+|..+...+ ...|++++|...++++++..|. +...+ ..++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYY-LSLGDLDSATALFKLAVANNVH-NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCT-TCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCch-hHHHH---HHHHHHHHHHHhhHHHH
Confidence 88888775 32232 46777788888 8889999999999999988776 44433 55677778888877665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-11 Score=114.80 Aligned_cols=242 Identities=12% Similarity=0.026 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
+.......|.+.|++++|...|++.. .| +...|..+...|.+.|++++|+..|++.... .++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKA----------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhH-----------
Confidence 34445566667777777777777652 22 3446777777777777777777777776652 111111
Q ss_pred CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038206 249 ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~ 325 (614)
....+..+...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++
T Consensus 73 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 73 -----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 01124444444555555555555554433 1233445555555555555555555
Q ss_pred HHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC---HHHHHHHHHh
Q 038206 326 YFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN---IDEALHLVSN 401 (614)
Q Consensus 326 l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 401 (614)
.|++. .. ..|+. ..+..+...+...+++++|...|+.+.+. .+.+...+..+...+...|+ +++|...+++
T Consensus 130 ~~~~a-l~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQ-IR--PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGG-CC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHH-hh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 55544 22 12322 22222221222333555555555555432 11224444445555555554 4444444443
Q ss_pred C----CCCCC------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 402 M----PMKPD------AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 402 m----~~~p~------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
. ...|+ ..+|..+...+ ...|+++.|.+.++++++..|. +......+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYY-TINRDKVKADAAWKNILALDPT-NKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhhhhc
Confidence 3 11122 23556666666 7778888888888888888887 6666655544433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-11 Score=111.06 Aligned_cols=203 Identities=12% Similarity=0.011 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHH
Q 038206 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280 (614)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 280 (614)
...|..+...+...|++++|+..|+++.... +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~la 78 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------------------------------------PSSADAHAALA 78 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------------------------------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------------------CChHHHHHHHH
Confidence 4567778888888888888888888876431 22334555666
Q ss_pred HHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCH
Q 038206 281 DMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMV 356 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~ 356 (614)
..|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++ ...+..|+ ...+..+...+...|++
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCH
Confidence 66667777777777666553 235667777777788888888888888877 44334443 35666677777888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+ ...|+.+.|.+.+++
T Consensus 158 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 158 AQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA-KVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 8888888887653 2335677778888888888888888888776 3333 556666666666 788888888888888
Q ss_pred HHHhcCCCCchh
Q 038206 435 VIESEGGICSGV 446 (614)
Q Consensus 435 ~~~~~~~~~~~~ 446 (614)
+.+..|. +...
T Consensus 235 ~~~~~p~-~~~~ 245 (252)
T 2ho1_A 235 LKRLYPG-SLEY 245 (252)
T ss_dssp HHHHCTT-SHHH
T ss_pred HHHHCCC-CHHH
Confidence 8888777 4443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-11 Score=116.31 Aligned_cols=211 Identities=9% Similarity=-0.059 Sum_probs=141.5
Q ss_pred CCchHHHHHHHHHHHcCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVL--PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLAN 190 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 190 (614)
|++++|+..|+++.+..... .+..++..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 67778888888887753210 134566677777778888888888888887765 335677778888888888888888
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccC
Q 038206 191 KVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267 (614)
Q Consensus 191 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 267 (614)
+.|++..+ .+..+|..+...|.+.|++++|+..|+++... .|+.......+..+...|+.+.+...+......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--- 173 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--- 173 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 88877632 35677888888888888888888888887654 444444444444556667777777777666654
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+++...+ .++..+...++.++|...++...+.+ ..+|..+...|...|++++|...|++.
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22333333 35666666677777777776655432 355666666666667777777666665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=107.88 Aligned_cols=198 Identities=10% Similarity=-0.031 Sum_probs=153.1
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.+++. .... +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA-LSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHH-HHhC-CCChHHHHHHH
Confidence 345677778888888888888888888664 345778888888888888888888888887 4321 23456677777
Q ss_pred HHHhcc-CCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcC
Q 038206 348 SACNHR-GMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHA 423 (614)
Q Consensus 348 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~ 423 (614)
..+... |++++|...++.+.+ .+..| +...+..+...+.+.|++++|.+.++++ ...| +...|..+...+ ...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK-MLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHH-HHcC
Confidence 788888 889999888888875 33334 3567788888888889999998888876 2234 467777777777 8888
Q ss_pred chHHHHHHHHHHHHhcC-CCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 424 SVVLSEEVAKQVIESEG-GICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
++++|...++++.+..| . +...+..+...+...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVL-QADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999888888 6 7777888888888889999998888887653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-10 Score=116.86 Aligned_cols=292 Identities=11% Similarity=-0.002 Sum_probs=163.9
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHH
Q 038206 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSD---VYINNSLIHFYASCGHLDLANKVFDNMLE-----R----SLVSWNV 206 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~----~~~~~~~ 206 (614)
......+...|++++|...++.+++.+.... ..++..+...|...|++++|...|++... . ...+|..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3334444555555555555555555432111 23455555666666666666666554311 1 1335666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc--cCCC----hhhHHHHHHHHHhhCc--------------------hhHHHHHHHH
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQIL--FEPD----GYTFQSITSACAGLAT--------------------LSLGMWAHAY 260 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~--~~pd----~~t~~~ll~a~~~~~~--------------------~~~~~~~~~~ 260 (614)
+...|...|++++|+..+++.... ..++ ..++..+...+...|+ ++.|...+..
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 777777777777777777776543 1111 1133333333334444 3333333222
Q ss_pred HHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 261 ILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKR--DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 261 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
..+ ++.....+ ...+|..+...|...|++++|+..+++......-.+
T Consensus 173 al~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 173 NLS-------------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HHH-------------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred HHH-------------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 221 11111111 123556666666777777777777766521111111
Q ss_pred c----HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC
Q 038206 339 N----SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKP 406 (614)
Q Consensus 339 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p 406 (614)
+ ..++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.+++. +..+
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 1 235666667777788888888877776542111111 456777888888888888888888765 1112
Q ss_pred C----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----CchhHHHHHHHHhhcCChhh
Q 038206 407 D----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CSGVYVLLSRVYASARRWND 462 (614)
Q Consensus 407 ~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~ 462 (614)
+ ..++..+...+ ...|+++.|...+++..+..... ...++..+...|...|+...
T Consensus 302 ~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp CHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 2 45667777777 88899999999999988764331 23456677788887777643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-11 Score=109.24 Aligned_cols=191 Identities=14% Similarity=0.060 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHH
Q 038206 168 SDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSA 244 (614)
Q Consensus 168 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a 244 (614)
++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++....-+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------- 71 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------- 71 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 3445555555666666666666666665422 13445555666666666666666666655433111
Q ss_pred HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc-----------CCHHHHHHHHhcCC--CC-CHHHHHHH
Q 038206 245 CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-----------GSLDIARQVFESMP--KR-DLTSWNSI 310 (614)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~-----------g~~~~A~~~~~~m~--~~-~~~~~~~l 310 (614)
+...+..+...|.+. |++++|...|++.. .| +...|..+
T Consensus 72 ---------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 124 (217)
T 2pl2_A 72 ---------------------------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124 (217)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------------------------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 233344444444444 66666666665543 22 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
-..|...|++++|+..|++. .... .+...+..+..++...|++++|...|+...+. -+.+...+..+...+.+.|
T Consensus 125 g~~~~~~g~~~~A~~~~~~a-l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g 199 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQA-LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKG 199 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--
T ss_pred HHHHHHcCChHHHHHHHHHH-Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence 66666666666666666665 3333 44455555666666666666666666666542 1224555556666666666
Q ss_pred CHHHHHHHHHh
Q 038206 391 NIDEALHLVSN 401 (614)
Q Consensus 391 ~~~~A~~~~~~ 401 (614)
++++|.+.|++
T Consensus 200 ~~~~A~~~~~~ 210 (217)
T 2pl2_A 200 KAEEAARAAAL 210 (217)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
Confidence 66666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-10 Score=116.34 Aligned_cols=343 Identities=9% Similarity=-0.031 Sum_probs=197.0
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF---SQGKQAHAHIFKRGLVSDVYINNSLIHFYASC 183 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 183 (614)
.+.+. |++++|+++|++..+.|. ...+..+-..+...|+. ++|...+....+. ++..+..|..++...
T Consensus 12 ~~~~~-g~~~~A~~~~~~aa~~g~----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 12 EALKR-GDTVTAQQNYQQLAELGY----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTC----CTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHhC-CCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 33444 666666666666655541 12222233333334444 5666666655533 333444444433333
Q ss_pred C-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHH
Q 038206 184 G-----HLDLANKVFDNMLER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMW 256 (614)
Q Consensus 184 g-----~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~ 256 (614)
| +.++|...|++..++ +...+..|...|...+..+++.+.++..... -..+......+...+...+.++....
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHH
Confidence 3 555666666555332 3345555666665555444333333333322 12233344444444555554444333
Q ss_pred HHHHHHHhccCCCCccccHHHHHHHHHHhcC---CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 038206 257 AHAYILRHCDHSLVTDVLVNNSLIDMYCKCG---SLDIARQVFESMP---KRDLTSWNSIILGFALH----GRAEAALKY 326 (614)
Q Consensus 257 ~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~----g~~~~A~~l 326 (614)
....+.+. ....++..+..|..+|.+.| +.++|.+.|++.. .++...+..|...|... ++.++|++.
T Consensus 163 ~a~~~~~~---a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 163 DVERICKA---ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHH---HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHH---HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 33333332 22234447788888888888 8888888887654 33455556666666544 689999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHH-H--hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-----CHHHHHHH
Q 038206 327 FDRLVVEESFSPNSITFVGVLSA-C--NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-----NIDEALHL 398 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 398 (614)
|++. . . -+...+..+-.. + ...++.++|..+|+...+ .| +...+..|..+|. .| ++++|.+.
T Consensus 240 ~~~a-a-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 240 LEKI-A-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHH-G-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHH-c-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9887 4 2 233344444443 3 458899999999999875 34 5667777888887 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHH
Q 038206 399 VSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLM 470 (614)
Q Consensus 399 ~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m 470 (614)
|++.- .-+...+..|-..| .. ..+.++|...|++..+.|. +.....|..+|.. ..+.++|...++..
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIY-RRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHH-HTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHh-CCCHHHHHHHHHHH-HCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99987 66777777777666 54 3489999999999988763 4677788888874 45889999999988
Q ss_pred HhCCCc
Q 038206 471 TDKGVT 476 (614)
Q Consensus 471 ~~~g~~ 476 (614)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 887753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.7e-10 Score=104.44 Aligned_cols=206 Identities=11% Similarity=0.012 Sum_probs=146.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+...|..+...+...|++++|++.|+++.... +.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~l 48 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------------------------------------PKNELAWLVR 48 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------------------------------------ccchHHHHHH
Confidence 34566677777777777777777777665431 2234456666
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccC
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALH-GRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRG 354 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g 354 (614)
...|...|++++|.+.|++.. ..+..+|..+...|... |++++|+..++++ ...+..|+ ...+..+..++...|
T Consensus 49 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 49 AEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKA-LADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH-HTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHH-HcCcCCcchHHHHHHHHHHHHHcC
Confidence 677777777777777776654 33566777788888888 8888888888887 44333343 466777777888888
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHhcCchHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK--PDAVIWRSLLDACCKKHASVVLSEEV 431 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~~~~~~~a~~~ 431 (614)
++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+...+..+...+ ...|+.+.+...
T Consensus 128 ~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~ 204 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA-KALGNAQAAYEY 204 (225)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCcHHHHHHH
Confidence 888888888888653 2335777888888899999999999888876 222 3566666666666 888999999999
Q ss_pred HHHHHHhcCCCCchhHH
Q 038206 432 AKQVIESEGGICSGVYV 448 (614)
Q Consensus 432 ~~~~~~~~~~~~~~~~~ 448 (614)
++.+.+..|. +.....
T Consensus 205 ~~~~~~~~p~-~~~~~~ 220 (225)
T 2vq2_A 205 EAQLQANFPY-SEELQT 220 (225)
T ss_dssp HHHHHHHCTT-CHHHHH
T ss_pred HHHHHHhCCC-CHHHHH
Confidence 9998888877 554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-10 Score=108.37 Aligned_cols=238 Identities=13% Similarity=0.111 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHH
Q 038206 135 KHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSL----VSWNVMI 208 (614)
Q Consensus 135 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~----~~~~~li 208 (614)
...+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667778899999999999999999875 34566888899999999999999999998744 222 2488999
Q ss_pred HHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
..|...|++++|++.|++.... .+.+..++..+...|.+.|+
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDR--------------------------------------DTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------------------STTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHhc--------------------------------------CcccHHHHHHHHHHHHHccC
Confidence 9999999999999999988642 12345678888899999999
Q ss_pred HHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCC---HHHHHH
Q 038206 289 LDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGM---VSEGRD 361 (614)
Q Consensus 289 ~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~ 361 (614)
+++|...|++..+ .+...|..+...+...+++++|++.|++. .. ..|+ ...+..+...+...++ .++|..
T Consensus 124 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV-LE--LKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--hCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 9999999988763 35677777772344456999999999988 44 2344 4556666666776677 777888
Q ss_pred HHHHHHHhcCCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 038206 362 YFDVMINEYNITPV------LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD-AVIWRSL 414 (614)
Q Consensus 362 ~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l 414 (614)
.++...+...-.|+ ...|..+...|.+.|++++|.+.|++. ...|+ ...+..+
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 88887664333344 257788899999999999999999886 34453 4444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-10 Score=108.01 Aligned_cols=191 Identities=12% Similarity=0.004 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
...|..+...+... |++++|++.|+++.+.. + .+...+..+...+...|++++|.+.++.+.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEID-P-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC-C-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 45677777788888 88999999988888775 2 355677777788888888888888888888765 33566777788
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh
Q 038206 178 HFYASCGHLDLANKVFDNMLE----R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 252 (614)
..|.+.|++++|.+.|++..+ + +...|..+...|.+.|++++|+..|++.....
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------- 171 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------------------- 171 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------
Confidence 888888888888888887754 2 34567777777888888888888877765431
Q ss_pred HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
+.+...+..+...|.+.|++++|...|+.+. ..+...|..+...+...|+.++|.+.+++
T Consensus 172 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 172 -----------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp -----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2234455666666777777777777776553 23556666777777777777777777777
Q ss_pred H
Q 038206 330 L 330 (614)
Q Consensus 330 m 330 (614)
+
T Consensus 235 ~ 235 (252)
T 2ho1_A 235 L 235 (252)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-11 Score=112.35 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=147.7
Q ss_pred ccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVL 347 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll 347 (614)
.....+..+...+...|++++|...|+++. ..+...|..+...|...|++++|++.|++. .... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA-LELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcC-CcchHHHHHHH
Confidence 345677788888999999999999988774 346788888999999999999999999988 4432 23557777888
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~ 425 (614)
..+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+ ...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL-ANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHcCCH
Confidence 8899999999999999998763 2446778888999999999999999999886 223 3677888888888 889999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.|...++++.+..|. +..++..+..+|.+.|++++|.+.+++..+.
T Consensus 176 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999888 8889999999999999999999999988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=112.42 Aligned_cols=209 Identities=11% Similarity=0.051 Sum_probs=126.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
....|..+...+.+.|++++|+..|++.....+ .+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--------------------------------------~~~~~~~~l 63 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--------------------------------------EDAIPYINF 63 (243)
T ss_dssp --------------------CCTTHHHHHTTCT--------------------------------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--------------------------------------ccHHHHHHH
Confidence 344566666777777777777777777654312 223344455
Q ss_pred HHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCH
Q 038206 280 IDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMV 356 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~ 356 (614)
...|.+.|++++|...|++.. ..+..+|..+...|...|++++|++.++++ .... +.+...+..+...+...|++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA-LRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHHhccH
Confidence 555555566666665555443 235566666777777777777777777776 3321 22445566667777778888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQ 434 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 434 (614)
++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ... .+..+|..+...+ ...|++++|...+++
T Consensus 142 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 142 KLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY-AYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 8888888777652 2335667778888888888888888888776 222 3567788888888 888999999999999
Q ss_pred HHHhcCCCCchhHHHHHH
Q 038206 435 VIESEGGICSGVYVLLSR 452 (614)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~ 452 (614)
+.+..|. +...+..+..
T Consensus 219 ~~~~~p~-~~~~~~~~~~ 235 (243)
T 2q7f_A 219 AIDIQPD-HMLALHAKKL 235 (243)
T ss_dssp HHHHCTT-CHHHHHHHTC
T ss_pred HHccCcc-hHHHHHHHHH
Confidence 9998888 6666655433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=116.81 Aligned_cols=267 Identities=13% Similarity=0.102 Sum_probs=152.4
Q ss_pred ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHccCCcHHHHHHHHHHHHh----CCC
Q 038206 97 NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK-----HTFPFALKACAYLFAFSQGKQAHAHIFKR----GLV 167 (614)
Q Consensus 97 ~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~ 167 (614)
....+...-..+... |++++|+..|++..+.+ |+. ..+..+...+...|+++.|...++.+++. +-.
T Consensus 8 ~~~~l~~~g~~~~~~-g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKS-GDCRAGVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 344555566677777 88888888888888775 432 45666777788888888888888876543 211
Q ss_pred C-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCC--------------------h
Q 038206 168 S-DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGE--------------------F 217 (614)
Q Consensus 168 ~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~ 217 (614)
| ...++..+...|...|++++|...|++..+ .+ ..+|..+...|...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 1 245677788888888998888888876632 12 3477888888888888 8
Q ss_pred hHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHH
Q 038206 218 DSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQV 295 (614)
Q Consensus 218 ~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (614)
++|+..+.+.... ..++.. ....++..+...|...|++++|...
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRA----------------------------------AQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH----------------------------------HHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcH----------------------------------HHHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888887776543 111110 0112333444444444444444444
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCHHHHHH
Q 038206 296 FESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 296 ~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
|++..+ ++ ..+|..+...|...|++++|...+++. .. .+..+. ..++..+...+...|++++|..
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT-LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH-HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 443321 11 124444555555555555555555544 21 111111 2344555555556666666666
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 362 YFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 362 ~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.++...+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65555432111111 345556666666666666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-11 Score=119.96 Aligned_cols=265 Identities=9% Similarity=0.004 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHH
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLE--R-SL----VSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSIT 242 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll 242 (614)
.+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.... ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--------
Confidence 344556677778888888888877622 2 22 35777777777888888888887776543 0000
Q ss_pred HHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHH
Q 038206 243 SACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK---------RDLTSWNSIILG 313 (614)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~---------~~~~~~~~li~~ 313 (614)
.+....++..+...|...|++++|...|++..+ ....+|..+...
T Consensus 122 --------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 122 --------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 111234455566666666676666666655431 123456666667
Q ss_pred HHhcCC-----------------HHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 314 FALHGR-----------------AEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 314 ~~~~g~-----------------~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
|...|+ +++|++.+++. .. .+-.|. ..++..+...+...|++++|...++...+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN-LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 777777 77777777654 21 111222 24566667777888888888888877754211
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKP----DAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
-.++ ...+..+...|...|++++|.+.+++. +... ...++..+...+ ...|++++|...++++++..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Confidence 1112 236777888888888888888888765 1011 145677777777 88899999999999888764
Q ss_pred CCC-----CchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 440 GGI-----CSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 440 ~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+.. ...++..+..+|.+.|++++|...+++..+
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 331 134677889999999999999999988755
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=112.30 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
..+..+...|...|++++|.+.+++. .. .++ ..++..+...+ ...|++++|...++++.+..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHH
Confidence 34455555555556666555555543 00 011 23455555555 666667777776666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-10 Score=116.90 Aligned_cols=367 Identities=10% Similarity=-0.001 Sum_probs=205.8
Q ss_pred CChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCCCc---hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC-----Cc
Q 038206 81 ADLDYAFRVFYQIEN-PNSFTWNTLIRACARSVDAK---PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF-----AF 151 (614)
Q Consensus 81 g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~~~~~---~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-----~~ 151 (614)
|++++|.+.|.+..+ .++.++..+-..|... |++ ++|+..|++.... +...+..+...+...+ +.
T Consensus 17 g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~-g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYSEAQVGLADIQVGT-RDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 677777777766543 2333444444444444 555 6777777666543 2223444444333332 55
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH---HHHHHhhcC-CCChhHHHHHHHHHHhcCChhHHHHHHHHh
Q 038206 152 SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL---ANKVFDNML-ERSLVSWNVMIDAFVQFGEFDSALKLFRRM 227 (614)
Q Consensus 152 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 227 (614)
++|...+....+.|. ...+..|..+|...+..+. +.+.+.... ..+...+..|...|...+.++++.......
T Consensus 91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 667777777766552 2255556666665544333 222232221 224556666666677666665555554444
Q ss_pred hhc-cCCChhhHHHHHHHHHhhC---chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc----CCHHHHHHHHhcC
Q 038206 228 QIL-FEPDGYTFQSITSACAGLA---TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC----GSLDIARQVFESM 299 (614)
Q Consensus 228 ~~~-~~pd~~t~~~ll~a~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~m 299 (614)
.+. ...+...+..+-..+...| +.+.+...+....+. | +++...+..|..+|... +++++|...|++.
T Consensus 168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 333 3334446666666666666 666666666666665 4 33344445677777554 6889999999877
Q ss_pred CCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhcC
Q 038206 300 PKRDLTSWNSIILG-F--ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG-----MVSEGRDYFDVMINEYN 371 (614)
Q Consensus 300 ~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~ 371 (614)
...+...+..|-.. | ...++.++|++.|++. ...| +...+..+-..|. .| ++++|..+|+...
T Consensus 244 a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~A-a~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 244 APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNG-RAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 73366677777666 3 4578999999999887 6655 3444444544454 44 8999999888663
Q ss_pred CCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCC
Q 038206 372 ITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGIC 443 (614)
Q Consensus 372 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 443 (614)
.-+...+..|..+|.. ..++++|.+.|++.-..-+......|-..| .. ..+.++|...+++..+.|.. +
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~G~g~~~d~~~A~~~~~~A~~~g~~-~ 391 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF-SQGKGTKPDPLNAYVFSQLAKAQDTP-E 391 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HSCTTBCCCHHHHHHHHHHHHTTCCH-H
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHHCCCH-H
Confidence 3456677777777776 348999999998762222344445555555 42 45889999999999888865 3
Q ss_pred chhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 444 SGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.......+......++.++|..+.++-.+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33333333333445566777777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-09 Score=102.41 Aligned_cols=158 Identities=11% Similarity=-0.048 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHH
Q 038206 274 LVNNSLIDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFV 344 (614)
Q Consensus 274 ~~~~~li~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~ 344 (614)
..+..+...|.. .|++++|...|++..+ .+..++..+...|.. .++.++|++.|++. ...+ +...+.
T Consensus 75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a-~~~~---~~~a~~ 150 (273)
T 1ouv_A 75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA-CDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-HHTT---CHHHHH
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-HhcC---cHHHHH
Confidence 344444555555 5555555555544332 234444444455554 55555555555554 3322 222333
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038206 345 GVLSACNH----RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLD 416 (614)
Q Consensus 345 ~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 416 (614)
.+-..+.. .+++++|...|+...+. + +...+..+..+|.. .+++++|.+.|++.-...+...+..+-.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 226 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGA 226 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33333333 45555555555544431 1 23334444444444 4444444444444310112333333333
Q ss_pred HHHHh----cCchHHHHHHHHHHHHhcC
Q 038206 417 ACCKK----HASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 417 ~~~~~----~~~~~~a~~~~~~~~~~~~ 440 (614)
.+ .. .+++++|.+.+++..+.+|
T Consensus 227 ~~-~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQ-YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HH-HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HH-HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 33 33 4444444444444444443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-08 Score=109.97 Aligned_cols=400 Identities=9% Similarity=0.035 Sum_probs=225.0
Q ss_pred CCchHHHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCC---chHHHHHHHHHHHcCCCCCCcc
Q 038206 64 QHKTLLIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDA---KPQAIVLFQRMIEQGNVLPDKH 136 (614)
Q Consensus 64 ~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~---~~~A~~~~~~m~~~~~~~p~~~ 136 (614)
.| . ..|..++..+.+ +.++.++.+|+++.. | ....|..-+..-.+. +. ++.+..+|++........|+..
T Consensus 64 ~d-~-~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~-~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TD-I-FLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK-MEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TC-H-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CC-H-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 56 6 888888888877 888888888888765 3 455677777777777 77 8888888888887653226666
Q ss_pred hHHHHHHHHHccCCc--------HHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHH---------hcCCHHHHHHHHhhc
Q 038206 137 TFPFALKACAYLFAF--------SQGKQAHAHIFK-RGL-VSD-VYINNSLIHFYA---------SCGHLDLANKVFDNM 196 (614)
Q Consensus 137 t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~---------~~g~~~~A~~~f~~m 196 (614)
.|..-+.-....++. +...++|+..+. .|. .++ ..+|...+.... ..++++.+.++|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 676666655444443 334577776655 465 453 457777776543 234567788888877
Q ss_pred CC-C--Ch-hHHH---HHHHHHH----------hcCChhHHHHHHHHhhhc---c---CCCh------------------
Q 038206 197 LE-R--SL-VSWN---VMIDAFV----------QFGEFDSALKLFRRMQIL---F---EPDG------------------ 235 (614)
Q Consensus 197 ~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~---~---~pd~------------------ 235 (614)
.. | +. .+|. .+...+. ...+++.|...+.++... + -|..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQ 300 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHH
Confidence 43 2 11 1232 2222110 011223344444443211 0 0100
Q ss_pred --hhHHHHHHHHHhhC-------chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH-HHHhcCC---CC
Q 038206 236 --YTFQSITSACAGLA-------TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR-QVFESMP---KR 302 (614)
Q Consensus 236 --~t~~~ll~a~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~m~---~~ 302 (614)
..|...+.---..+ ..+....+++..+.. ++.+..+|-..+..+...|+.++|. ++|++.. ..
T Consensus 301 ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 301 QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 11222221111111 012234556666654 3445566666666666777776775 6666544 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC---------CCcc------------HHHHHHHHHHHhccCCHHHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEES---------FSPN------------SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
+...|-..+...-+.|++++|.++|+++ .... -.|+ ...|...+....+.|.++.|+.
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~-l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSC-IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555666666667777777777777766 3210 0131 2345566666666677777777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM--PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 438 (614)
+|....+.. -.+....|...+.+-.+.| +.+.|.++|+.. ...-+...|...+.-. ...|+.+.|..+|++++..
T Consensus 456 vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe-~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 456 IFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL-IYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HhCCCHHHHHHHHHHHHHh
Confidence 777775520 1112233333333333443 367777777665 1112455566666655 6667777777777777766
Q ss_pred cCCC--CchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 439 EGGI--CSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 439 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+.+ ....|...+..-.+.|..+.+.++.+++.+.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5531 2345666666667777777777777777654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-10 Score=111.15 Aligned_cols=267 Identities=10% Similarity=0.015 Sum_probs=178.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 173 NNSLIHFYASCGHLDLANKVFDNMLE--R-S----LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~f~~m~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
+......+...|++++|...|++..+ | + ...|..+...|...|++++|++.+++....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 72 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 72 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence 34445566777777777777776521 2 2 245666777777777777777777766532
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFA 315 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~ 315 (614)
..+. +..+ ...++..+...|...|++++|...|++..+ ++ ..++..+...|.
T Consensus 73 ---------------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 73 ---------------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp ---------------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 0000 1111 234556666777777777777777665431 12 236666777777
Q ss_pred hcCC--------------------HHHHHHHHHHHhh---hcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 316 LHGR--------------------AEAALKYFDRLVV---EESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 316 ~~g~--------------------~~~A~~l~~~m~~---~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
..|+ +++|++.+++... ..+..|. ..++..+...+...|++++|...++...+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777 7778777766511 1111222 24566677778888999999998888764211
Q ss_pred CCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 372 ITPV----LEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
-.++ ...+..+...|...|++++|.+.+++. +..++ ..++..+...+ ...|++++|...++++.+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHH
Confidence 1112 337788889999999999999988875 11122 45677777777 89999999999999998765
Q ss_pred CCC-C----chhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 440 GGI-C----SGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 440 ~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.. + ..++..+..+|.+.|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 431 1 346778999999999999999999987653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-10 Score=116.97 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AV 409 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~ 409 (614)
++..+...+...|++++|...++...+...-.. ....+..+...|...|++++|.+.+++. .. .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 445555556666666666666655543211001 1345666677777777777777766654 10 011 33
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
++..+...+ ...|++++|.+.++++.+....
T Consensus 345 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAH-SAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHH-HHhccHHHHHHHHHHHHHHHhh
Confidence 566666666 7778888888888888776544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-10 Score=112.70 Aligned_cols=241 Identities=12% Similarity=0.092 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCc-hhHHHHHHHHHHHhccCCCCccccHHHHHHH
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLAT-LSLGMWAHAYILRHCDHSLVTDVLVNNSLID 281 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~ 281 (614)
.|+.+...+.+.|++++|+..|++....-+-+...|..+..++...|+ +++|...+..+++. -+.+..+|+.+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHHHHHHH
Confidence 445555555555555555555555544323334444444445555553 55555555555543 2234556677777
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhc-cCCH
Q 038206 282 MYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNH-RGMV 356 (614)
Q Consensus 282 ~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~-~g~~ 356 (614)
+|.+.|++++|...|+++. ..+...|..+...+.+.|++++|+..|+++ .. +.| +...|..+..++.. .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a-l~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL-LK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 7777777777777777665 336677777777777777777777777776 33 233 33556666666666 4554
Q ss_pred HHH-----HHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcC----
Q 038206 357 SEG-----RDYFDVMINEYNITP-VLEHYGCLVDLLARAG--NIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHA---- 423 (614)
Q Consensus 357 ~~a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~---- 423 (614)
++| ...|+..++ +.| +...|..+..+|.+.| ++++|.+.+.++...| +...+..+...+ ...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~-~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY-EDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH-HHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHH-HHHhcccc
Confidence 555 466666654 234 4667777777777777 5777887777764444 455666676666 5442
Q ss_pred -----chHHHHHHHHHH-HHhcCCCCchhHHHHHHHHh
Q 038206 424 -----SVVLSEEVAKQV-IESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 424 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 455 (614)
.+++|.++++++ .+.+|. ....|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 257888888888 777777 5666666555444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-09 Score=100.86 Aligned_cols=224 Identities=12% Similarity=-0.002 Sum_probs=178.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHH
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSL 279 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 279 (614)
+..++..+...|...|++++|+..|++.. +. + +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~----------------------------------~~---~---~~~a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKAC----------------------------------DL---K---ENSGCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------------HT---T---CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------------------------HC---C---CHHHHHHH
Confidence 44555666666666666666666666554 21 2 23456677
Q ss_pred HHHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH
Q 038206 280 IDMYCK----CGSLDIARQVFESMPK-RDLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC 350 (614)
Q Consensus 280 i~~y~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~ 350 (614)
...|.. .|++++|...|++..+ .+..++..+...|.. .++.++|++.|++. ...+ +...+..+-..+
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA-CDLK---YAEGCASLGGIY 120 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH-HHcC---CccHHHHHHHHH
Confidence 788888 9999999999987653 377888999999999 99999999999998 5554 566777788888
Q ss_pred hc----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-
Q 038206 351 NH----RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK- 421 (614)
Q Consensus 351 ~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~- 421 (614)
.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.|++.--..+...+..+-..+ ..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~-~~g 195 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY-HHG 195 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHT
T ss_pred HcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HcC
Confidence 88 99999999999999763 3 56677888889988 999999999998862224667788888888 88
Q ss_pred ---cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCC
Q 038206 422 ---HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 422 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 475 (614)
.+++++|...+++..+.++ ...+..+..+|.+ .|++++|.+.+++..+.|-
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8999999999999999865 5778889999999 9999999999999877653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-09 Score=106.97 Aligned_cols=211 Identities=8% Similarity=0.007 Sum_probs=142.6
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHccCC-cHHHHHHHHHHHHhCCCCchhHHHH
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFA-FSQGKQAHAHIFKRGLVSDVYINNS 175 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 175 (614)
...|+.+-..+.+. |++++|+..|++.++.. | +...|..+..++...|+ +++|...++.+++.. +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~-g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRD-ERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHC-CChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 35677777788888 89999999999988876 4 45567777788888886 999999999888876 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHh-hCch
Q 038206 176 LIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAG-LATL 251 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~-~~~~ 251 (614)
+..+|.+.|++++|+..|++.. ..+...|..+...+.+.|++++|+..|+++...-+-+...|..+..++.. .+..
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888888773 33667888888888888888888888888876544455566666666655 3433
Q ss_pred hHH-----HHHHHHHHHhccCCCCccccHHHHHHHHHHhcC--CHHHHHHHHhcCC--CCCHHHHHHHHHHHHhc
Q 038206 252 SLG-----MWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG--SLDIARQVFESMP--KRDLTSWNSIILGFALH 317 (614)
Q Consensus 252 ~~~-----~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~ 317 (614)
+.+ ...+..+++. -+.+...|+.+...|.+.| ++++|.+.+.++. ..+...+..+...|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 444 2444444443 1223445555555555555 3455555554441 12344455555555444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-10 Score=119.20 Aligned_cols=193 Identities=8% Similarity=-0.046 Sum_probs=163.9
Q ss_pred ccccHHHHHHHHHHhcCCH-HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHH
Q 038206 271 TDVLVNNSLIDMYCKCGSL-DIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGV 346 (614)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~l 346 (614)
.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|++.|++. .. +.|+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA-LT--HCKNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HT--TCCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh--hCCCHHHHHHH
Confidence 4567788888888888999 99998888765 335788999999999999999999999987 44 45777888888
Q ss_pred HHHHhcc---------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC--
Q 038206 347 LSACNHR---------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA--------GNIDEALHLVSNM-PMKP-- 406 (614)
Q Consensus 347 l~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p-- 406 (614)
...+... |++++|...|+...+. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 8889998 9999999999999763 233678889999999998 9999999999887 4455
Q ss_pred --CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 407 --DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 407 --~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+...|..+...+ ...|++++|.+.|+++.+..|. +...+..+..++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLH-KYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778888888888 9999999999999999999999 8889999999999999999998765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-09 Score=95.88 Aligned_cols=163 Identities=13% Similarity=0.077 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
+...|..+-..|.+.|++++|++.|++. .+ +.|+ ..++..+..++.+.|++++|...+...... .+.+...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKV-LK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 3455666666666666666776666665 32 2333 345555666666777777777777666542 2234555666
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+...+...++++.|.+.+.+. ...| +...|..+...+ ...|++++|++.++++++..|. +..+|..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVY-DSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCC
Confidence 666777777777777777665 2233 456666666666 7778888888888888888877 77788888888888888
Q ss_pred hhhHHHHHHHHHh
Q 038206 460 WNDVGLVRKLMTD 472 (614)
Q Consensus 460 ~~~a~~~~~~m~~ 472 (614)
+++|.+.|++..+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-09 Score=100.76 Aligned_cols=181 Identities=12% Similarity=0.101 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHhccCCCCc-cccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-CHH-HHHHHHHHHHhcCCHHHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVT-DVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-DLT-SWNSIILGFALHGRAEAALKY 326 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l 326 (614)
++|..+++..++. +.| +...|..+...+.+.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+
T Consensus 81 ~~A~~~~~rAl~~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAIST----LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTT----TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 4555555555541 233 344677777777777777777777776542 2 233 677777777777777777777
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHH-hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C-
Q 038206 327 FDRLVVEESFSPNSITFVGVLSAC-NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-P- 403 (614)
Q Consensus 327 ~~~m~~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~- 403 (614)
|++. .... +++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++. .
T Consensus 157 ~~~a-~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 157 FKKA-REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHH-HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHH-HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7776 3321 12223333222221 23577777777777776532 235666777777777777777777777765 1
Q ss_pred --CCC--CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 404 --MKP--DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 404 --~~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.| ....|..++... ...|+.+.|..+++++.+..|+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~-~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHccc
Confidence 233 355677777666 7777777777777777777765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.6e-09 Score=107.07 Aligned_cols=162 Identities=11% Similarity=0.109 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCc-cH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSP-NS 340 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p-~~ 340 (614)
+++.+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++. .. .+..| ..
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA-IAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhccchhHH
Confidence 455555666666666666665554331 11 124555555556666666666665554 22 02212 22
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEY---NITPVLEHYGCLVDLLARAGN---IDEALHLVSNMPMKPDAV-IWRS 413 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ 413 (614)
.++..+...+...|++++|...++...+-. +-+.....+..+...|...|+ +++|..++++.+..|+.. .+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 445555555555666666666555543311 111111223344444555555 555555555543333222 2333
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIES 438 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~ 438 (614)
+...+ ...|+++.|...++++.+.
T Consensus 345 la~~y-~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 345 VAKYY-HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHH
Confidence 33333 4555555555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=7e-09 Score=101.44 Aligned_cols=113 Identities=5% Similarity=0.023 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHH-------ccCCc-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACA-------YLFAF-------SQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
++|+..|++..... + -+...|......+. ..|++ ++|..+++..++.-.+.+...|..+...+.
T Consensus 33 ~~a~~~~~~al~~~-p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-G-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-T-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56777888777765 1 24456666665554 34665 777777777776311334556777777777
Q ss_pred hcCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 182 SCGHLDLANKVFDNMLE--R-SLV-SWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 182 ~~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77778888777777633 2 233 6777777777777777777777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-10 Score=108.84 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=23.5
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
+.+..+...++......+. +..++..+..+|.+.|++++|.+.+++..
T Consensus 258 ~~~~~a~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVDSPT-VTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CCSCCCC---------CHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444555555544444 45566666677777777777777666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-09 Score=91.90 Aligned_cols=157 Identities=16% Similarity=0.160 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHH
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACA 246 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~ 246 (614)
..+|..|-..|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+.....+-+...+..+...+.
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4455555555555555555555555542 1244455555556666666666666655554433333334444444444
Q ss_pred hhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 038206 247 GLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAA 323 (614)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A 323 (614)
..++.+.+...+....+. .+.+...+..+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|
T Consensus 85 ~~~~~~~a~~~~~~a~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIAL----NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 455555555555554443 23344556666666777777777777666554 23556666666777777777777
Q ss_pred HHHHHHH
Q 038206 324 LKYFDRL 330 (614)
Q Consensus 324 ~~l~~~m 330 (614)
++.|++.
T Consensus 161 ~~~~~~a 167 (184)
T 3vtx_A 161 VKYFKKA 167 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.9e-09 Score=91.67 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHh
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACN 351 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~ 351 (614)
.+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|.+.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--------------------- 68 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS--------------------- 68 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------
Confidence 344445555555555555555555442 23444555555555555555555555544
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCchHHHH
Q 038206 352 HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 352 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
.+. .+.+...+..+...|...|++++|.+.++++ .. ..+...|..+...+ ...|++++|.
T Consensus 69 ---------------~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~ 130 (186)
T 3as5_A 69 ---------------LAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL-DNLGRFDEAI 130 (186)
T ss_dssp ---------------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHH
T ss_pred ---------------Hhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH-HHcCcHHHHH
Confidence 331 1223344444555555555555555555443 11 12444555555555 5666666666
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..++++.+..|. +...+..+..+|...|++++|...+++..+
T Consensus 131 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 131 DSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666655 556666666666666666666666665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-09 Score=109.21 Aligned_cols=208 Identities=10% Similarity=-0.012 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 038206 115 KPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAF-SQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVF 193 (614)
Q Consensus 115 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 193 (614)
+++++..+++..... + .+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+..+|.+.|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-Q-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-C-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-c-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666554433 1 2445566666667777777 77777777777654 234556666777777777777777777
Q ss_pred hhc--CCCChhHHHHHHHHHHhc---------CChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHH
Q 038206 194 DNM--LERSLVSWNVMIDAFVQF---------GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYIL 262 (614)
Q Consensus 194 ~~m--~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 262 (614)
++. ..|+...|..+...|... |++++|+..|++..+..+
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------------------------------ 210 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV------------------------------ 210 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT------------------------------
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC------------------------------
Confidence 665 234445666666666666 666666666666554322
Q ss_pred HhccCCCCccccHHHHHHHHHHhc--------CCHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 263 RHCDHSLVTDVLVNNSLIDMYCKC--------GSLDIARQVFESMP--K----RDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 263 ~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~A~~~~~~m~--~----~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
.+...+..+...|... |++++|...|++.. . .+...|..+...|...|++++|++.|+
T Consensus 211 --------~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 211 --------LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2334455555555555 55666666665543 2 255666666666777777777777776
Q ss_pred HHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038206 329 RLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVM 366 (614)
Q Consensus 329 ~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~ 366 (614)
+. .. ..|+ ...+..+..++...|++++|.+.+..+
T Consensus 283 ~a-l~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 283 QA-AA--LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH-HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HH-HH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 65 33 2233 244555666666667777777666655
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-08 Score=103.70 Aligned_cols=220 Identities=8% Similarity=-0.048 Sum_probs=121.0
Q ss_pred HHHccCCcHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC-----hhHHHHHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKR----GLVS-DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS-----LVSWNVMI 208 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~-----~~~~~~li 208 (614)
.+...|++++|...+....+. +-.+ ...++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345556666666666665542 1011 123455555566666666655555544311 11 23455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 209 DAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
..|...|++++|+..|++.... -.++. .....++..+...|...
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQP----------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------------------------------HHHHHHHHHHHHHHHHC
Confidence 5566666666666655555432 01111 01123566666677777
Q ss_pred CCHHHHHHHHhcCCC--------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhc----CCCccHHHHHHHHHHHhcc
Q 038206 287 GSLDIARQVFESMPK--------R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEE----SFSPNSITFVGVLSACNHR 353 (614)
Q Consensus 287 g~~~~A~~~~~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----g~~p~~~t~~~ll~a~~~~ 353 (614)
|++++|.+.|++..+ | ...++..+...|...|++++|.+.+++. ... +-+.....+..+-..+...
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG-MAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 777776666655432 2 2345666667777777777777777665 221 1111123345566667777
Q ss_pred CC---HHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 354 GM---VSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 354 g~---~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
|+ .++|..+++.. +..| ....+..+...|.+.|++++|.+.+++.
T Consensus 317 ~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77 66666666544 2233 3446667788888888888888777654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-07 Score=99.53 Aligned_cols=370 Identities=10% Similarity=0.043 Sum_probs=248.3
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-CCchh
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA---FSQGKQAHAHIFKRGL-VSDVY 171 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~g~-~~~~~ 171 (614)
.|..+|..+|..+.+. +.++.+..+|+++...- + .+...|..-+..-.+.++ .+.+.++|+..+.... .|++.
T Consensus 64 ~d~~~W~~yi~~~~~~-~~~~~aR~vyEraL~~f-P-~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSL-KQWKQVYETFDKLHDRF-P-LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 4888999999999998 99999999999999875 2 345567777777778888 9999999999988642 47888
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHhhc-----C-CC-ChhHHHHHHHHHH---------hcCChhHHHHHHHHh
Q 038206 172 INNSLIHFYASCGHL--------DLANKVFDNM-----L-ER-SLVSWNVMIDAFV---------QFGEFDSALKLFRRM 227 (614)
Q Consensus 172 ~~~~li~~~~~~g~~--------~~A~~~f~~m-----~-~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~m 227 (614)
.|...+....+.++. +...++|+.. . .+ +...|...+.-.. ..++.+.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 898888876666654 3344777753 1 23 3457888776443 234567788888888
Q ss_pred hhc-cCCChhhHH---HHHHHHH----------hhCchhHHHHHHHHHHHhccCCC----Ccc-----------------
Q 038206 228 QIL-FEPDGYTFQ---SITSACA----------GLATLSLGMWAHAYILRHCDHSL----VTD----------------- 272 (614)
Q Consensus 228 ~~~-~~pd~~t~~---~ll~a~~----------~~~~~~~~~~~~~~~~~~~~~g~----~~~----------------- 272 (614)
... ...-..+|. ....... ....++.|+..+..+.+..+ ++ +..
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccchhccCCCCchhHH
Confidence 743 111122222 2111110 01122333444443333211 11 110
Q ss_pred --ccHHHHHHHHHHhcC-------CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhhcCCCcc
Q 038206 273 --VLVNNSLIDMYCKCG-------SLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL-KYFDRLVVEESFSPN 339 (614)
Q Consensus 273 --~~~~~~li~~y~~~g-------~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~g~~p~ 339 (614)
...|...++.--..+ ..+.+..+|++.. ..+...|-..+.-+.+.|+.++|. ++|++. .. ..+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA-i~-~~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG-QQ-CIPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH-HH-HCTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HH-hCCCC
Confidence 235556665444332 1344556677664 347788888888888899999997 999987 43 23334
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---------CCCCC------------hhHHHHHHHHHHHcCCHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEY---------NITPV------------LEHYGCLVDLLARAGNIDEALHL 398 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---------~~~p~------------~~~~~~li~~~~~~g~~~~A~~~ 398 (614)
...+...+...-..|+++.|.++|+.+.... .. |+ ...|...++...+.|.++.|.++
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4456667777788899999999999987631 11 42 34788899999999999999999
Q ss_pred HHhCCCC-----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 399 VSNMPMK-----PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 399 ~~~m~~~-----p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
|.+.... +......+.+.- ...++.+.|..+|+..++.-|. +...+...++.....|+.+.|..+|++....
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~--~~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEY--HISKDTKTACKVLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHH--TTTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCChHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9987211 223333333331 2345699999999999999888 7777788899889999999999999998765
Q ss_pred CC
Q 038206 474 GV 475 (614)
Q Consensus 474 g~ 475 (614)
..
T Consensus 534 ~~ 535 (679)
T 4e6h_A 534 IS 535 (679)
T ss_dssp SS
T ss_pred cC
Confidence 44
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-07 Score=95.49 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=95.2
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--cCCC----hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCC--Cc-cccHHHHH
Q 038206 209 DAFVQFGEFDSALKLFRRMQIL--FEPD----GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSL--VT-DVLVNNSL 279 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~--~~pd----~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~~~~~~~l 279 (614)
..+...|++++|+..|++.... ..+| ..++..+..++...|+.+.|...+....+...... .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3345566666666666665443 1122 11233333333444444444444433333211000 11 12344555
Q ss_pred HHHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCccHHHHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPNSITFVGV 346 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~~~t~~~l 346 (614)
...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++. .. .+.+....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA-AKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHhhCChhHHHHHHHH
Confidence 5556666666666555544321 11 124444555555555555555555544 21 0111113344444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNI---TPVLEHYGCLVDLLARAGN---IDEALHLVSNMPMKPDAV-IWRSLLDACC 419 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~~~~ll~~~~ 419 (614)
...+.+.|++++|...++...+...- +.....+..+...|...|+ +++|...+++.+..|+.. .+..+...+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y- 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF- 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH-
Confidence 44555555555555555554432111 1112223333334444444 444555554443222222 222233333
Q ss_pred HhcCchHHHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVI 436 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~ 436 (614)
...|+++.|...++++.
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44445555554444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.5e-09 Score=112.37 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGC 381 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 381 (614)
..+|+.|-..|.+.|++++|++.|++. .+ +.|+ ..++..+-.++.+.|++++|.+.|+...+. .| +...|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kA-l~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKA-LE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345666666666666666666666655 32 2343 355666666666777777777777666542 33 4566777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+..+|.+.|++++|++.|++. .+.| +...|+.+...+ ...|++++|++.|+++++..|+ +...|..|..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~-~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH-KDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 777777777777777777665 3344 456777777777 7778888888888888888887 77788888888888888
Q ss_pred hhhHHHHHHHHH
Q 038206 460 WNDVGLVRKLMT 471 (614)
Q Consensus 460 ~~~a~~~~~~m~ 471 (614)
+++|.+.+++..
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-10 Score=107.80 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHcCCCCchHHHHHHHHHHHc-------CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh------
Q 038206 98 SFTWNTLIRACARSVDAKPQAIVLFQRMIEQ-------GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKR------ 164 (614)
Q Consensus 98 ~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 164 (614)
..+|..+...+... |++++|+..|+++.+. ..+ ....++..+...+...|++++|...+..+++.
T Consensus 27 ~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 27 LRTLHNLVIQYASQ-GRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 45566777777777 7888888887777663 111 23345566666667777777777777766653
Q ss_pred CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 165 GL-VSDVYINNSLIHFYASCGHLDLANKVFDNMLE-------R----SLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 165 g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
+- +....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 11234555666666666666666666655421 0 12345555555666666666666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-08 Score=88.19 Aligned_cols=158 Identities=15% Similarity=0.082 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHH
Q 038206 236 YTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIIL 312 (614)
Q Consensus 236 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~ 312 (614)
..+..+...+...|+++.+...+..+.+. .+.+..++..+...|...|++++|...|+++. ..+...|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 35666777888999999999999887753 34467788999999999999999999998765 346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI 392 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (614)
.+...|++++|.+.++++ ... .+.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKV-AEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHTCHHHHHHHHHHH-HHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHH-Hhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCH
Confidence 888888888888888877 332 1233455555666666667777777766666542 122344444455555555555
Q ss_pred HHHHHHHHh
Q 038206 393 DEALHLVSN 401 (614)
Q Consensus 393 ~~A~~~~~~ 401 (614)
++|.+.+++
T Consensus 161 ~~A~~~~~~ 169 (186)
T 3as5_A 161 EEALPHFKK 169 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.9e-07 Score=91.51 Aligned_cols=196 Identities=14% Similarity=0.027 Sum_probs=132.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC-------C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC--Cc--c
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP-------K---R-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESF--SP--N 339 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~-------~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~--~p--~ 339 (614)
++..+...|...|++++|...+++.. . + ...++..+...+...|++++|...+++. ..... .+ .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~ 173 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTTTSCGGGG
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHhhccCcHHH
Confidence 34566677778888888877776543 1 1 1245566777788889999999888876 33211 11 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhCC-CCCC-----H
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYG-----CLVDLLARAGNIDEALHLVSNMP-MKPD-----A 408 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p~-----~ 408 (614)
..++..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..|. .
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 24566677778889999999999988765311111111111 23445778999999999998872 2221 3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC----c-hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC----S-GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+...+ ...|++++|...++++.+..+... . ..+..+..+|...|+.++|...+++...
T Consensus 254 ~~~~~la~~~-~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566666777 888999999999998876543211 1 3566778889999999999999988654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-07 Score=90.05 Aligned_cols=222 Identities=10% Similarity=0.001 Sum_probs=105.4
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH----TFPFALKACAYLFAFSQGKQAHAHIFKRGLV-SD----VYINNSLI 177 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li 177 (614)
.+... |++++|...+++....... .+.. ++..+...+...|+++.|.+.+.+..+.... .+ ..++..+.
T Consensus 23 ~~~~~-g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAIND-GNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34455 7777777777776665411 1211 2334445556667777777777666542111 11 12244555
Q ss_pred HHHHhcCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cC--C--ChhhHHHH
Q 038206 178 HFYASCGHLDLANKVFDNMLE----------R-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE--P--DGYTFQSI 241 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--p--d~~t~~~l 241 (614)
..|...|++++|...+++..+ + ....+..+...+...|++++|...+++.... .. + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 666667777776666655411 1 1224455556666667777777766665543 10 1 01223333
Q ss_pred HHHHHhhCchhHHHHHHHHHHHhccC-CCCccccHH--HHHHHHHHhcCCHHHHHHHHhcCCCCC-------HHHHHHHH
Q 038206 242 TSACAGLATLSLGMWAHAYILRHCDH-SLVTDVLVN--NSLIDMYCKCGSLDIARQVFESMPKRD-------LTSWNSII 311 (614)
Q Consensus 242 l~a~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~--~~li~~y~~~g~~~~A~~~~~~m~~~~-------~~~~~~li 311 (614)
...+...|+++.|...++........ +.++..... ...+..+...|++++|...++....++ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 44444455555555555444433100 110000000 012233445555555555555444221 11333444
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 038206 312 LGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m 330 (614)
..+...|++++|...+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.8e-08 Score=96.24 Aligned_cols=226 Identities=8% Similarity=-0.021 Sum_probs=161.7
Q ss_pred HHHHhhCchhHHHHHHHHHHHhccCCC--CccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----C-----CHHHHHHH
Q 038206 243 SACAGLATLSLGMWAHAYILRHCDHSL--VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-----R-----DLTSWNSI 310 (614)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~-----~~~~~~~l 310 (614)
..+...|+++.|...+..+.+.....- +....++..+...|...|+++.|...+++..+ + ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345788999999999999887521111 11355788899999999999999888776531 1 24578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhh---cCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhc---CCCCChhHHHHHH
Q 038206 311 ILGFALHGRAEAALKYFDRLVVE---ESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEY---NITPVLEHYGCLV 383 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~---~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li 383 (614)
...|...|++++|++.|++.... .+-.+ ...++..+...+...|++++|...++...+-. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999887221 12111 12567778888999999999999999886511 2233467788899
Q ss_pred HHHHHcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHhcCCC-CchhHHHHHH
Q 038206 384 DLLARAGNIDEALHLVSNM----PM--KPD-AVIWRSLLDACCKKHAS---VVLSEEVAKQVIESEGGI-CSGVYVLLSR 452 (614)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 452 (614)
..|.+.|++++|.+.+++. +. .|. ...+..+-..+ ...++ ++.|...+++ .+..| ....+..+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly-~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY-KETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 9999999999999999875 11 233 33444444444 67777 6666666665 22221 2345678999
Q ss_pred HHhhcCChhhHHHHHHHHHh
Q 038206 453 VYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~ 472 (614)
.|.+.|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-08 Score=88.57 Aligned_cols=203 Identities=9% Similarity=0.040 Sum_probs=126.8
Q ss_pred CChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHH
Q 038206 233 PDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNS 309 (614)
Q Consensus 233 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~ 309 (614)
.|...+......+...|+++.|...+..+.+. .-+++...+..+...|.+.|++++|...|++.. ..+...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL---TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 34556666667777778888888888777776 322455566667777777788888777777654 224566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--------HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC---hhH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNS--------ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV---LEH 378 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 378 (614)
+...|...|++++|++.|++. .. ..|+. ..|..+-..+...|++++|...|+...+ ..|+ ...
T Consensus 82 l~~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~ 155 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEG-IK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDA 155 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHH-HH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHH
Confidence 777777777888887777776 33 22332 3355555666677777777777777743 3444 455
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 379 YGCLVDLLARAGNI--DEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 379 ~~~li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
+..+...|...|+. ++|..+ . ..+...|..... ...+.+++|...+++..+..|. +..+...+..+
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~~---~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~i 223 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPL----A-SSNKEKYASEKA---KADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHHH---HHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 66666666555432 222211 1 123344443332 3345678888888888888888 66665555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=92.17 Aligned_cols=224 Identities=14% Similarity=0.162 Sum_probs=151.1
Q ss_pred HhhCchhHHHHHHHHHHHhccC----CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDH----SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK----------R-DLTSWNSI 310 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~----------~-~~~~~~~l 310 (614)
...|+++.|...++...+.... ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567788888888777764211 2233467888899999999999999999887641 1 34678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhhc------CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhc-----CCCC-Chh
Q 038206 311 ILGFALHGRAEAALKYFDRLVVEE------SFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEY-----NITP-VLE 377 (614)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~ 377 (614)
...|...|++++|++.|.+. ... .-.|+ ..++..+...+...|++++|..+++...+.. +-.| ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRA-LEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHH-HHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987 432 11233 4677788888999999999999999887531 1123 356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHhcCchHHHH------HHHHHHHHhcC
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNMP----------MKPD-AVIWRSLLDACCKKHASVVLSE------EVAKQVIESEG 440 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~~~~~a~------~~~~~~~~~~~ 440 (614)
.+..+...|.+.|++++|.+.+++.- ..+. ...|..+.... ...+....+. ..++......+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE-ESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH-HTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 78889999999999999999987751 1222 22333333333 3322222222 22211111112
Q ss_pred CCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 441 GICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
. ...++..+..+|.+.|++++|...+++..+
T Consensus 250 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 T-VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 345678899999999999999999988754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-07 Score=100.51 Aligned_cols=156 Identities=8% Similarity=0.087 Sum_probs=110.7
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHH
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALK 143 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~ 143 (614)
..++.|-..|.+ |++++|.+.|++..+ | +..+|+.+-..|.+. |++++|++.|++..+.. | +...|..+..
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~-g~~~eA~~~~~~Al~l~---P~~~~a~~nLg~ 85 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ-GKLQEALMHYKEAIRIS---PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC---CCCHHHHHHHHH
Confidence 677777777777 778888777776543 3 456677777777777 77777877777777765 4 3456777777
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHhcCChhHH
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--E-RSLVSWNVMIDAFVQFGEFDSA 220 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A 220 (614)
++...|++++|.+.+++.++.. +.+...++.|..+|.+.|++++|.+.|++.. . .+...|..+...|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777777764 3345667777777777777777777777652 2 2456777777777777777777
Q ss_pred HHHHHHhhh
Q 038206 221 LKLFRRMQI 229 (614)
Q Consensus 221 ~~~~~~m~~ 229 (614)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-07 Score=76.32 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=63.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~~~~ 424 (614)
...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ .. ..+...|..+...+ ...|+
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 84 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQGD 84 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HHhcC
Confidence 33344444444444444444331 1123344444455555555555555555444 11 12344555555555 56666
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++.|.+.++++.+..|. +...+..++.+|.+.|++++|...++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666655 555666666666666666666666666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-07 Score=88.34 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+|..+...|...|++++|..+|++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666666666666654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-06 Score=80.68 Aligned_cols=128 Identities=8% Similarity=-0.024 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|...-..+... |++++|++.|++..+.... ++...+..+..++...|++++|...++..++.. +.+..++..+..
T Consensus 8 ~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3344444444444 5555555555554444422 233333334444444455555555555444432 223344444445
Q ss_pred HHHhcCCHHHHHHHHhhcCC--C-Ch-------hHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 179 FYASCGHLDLANKVFDNMLE--R-SL-------VSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
.|.+.|++++|...|++..+ | +. ..|..+...+.+.|++++|++.|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555544311 1 22 2344444445555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-05 Score=81.49 Aligned_cols=349 Identities=11% Similarity=0.014 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCC-CchHHHHHHHHHHHc-CCCCCCcchHHHHHHH
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIEN--PNSFTWNTLIRACARSVD-AKPQAIVLFQRMIEQ-GNVLPDKHTFPFALKA 144 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~~~-~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~ 144 (614)
.+|...+..+-.|+++.+..+|++... |++..|...+.-..+. + ..+....+|+..... |..+++...|...+.-
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~-~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV-SQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH-C----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 566777777666889999999988665 8888888887766665 4 345566777777654 4221355566666655
Q ss_pred HH----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------------CCHHHHHHHHhhcC----CCChhH
Q 038206 145 CA----YLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASC-------------GHLDLANKVFDNML----ERSLVS 203 (614)
Q Consensus 145 ~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------------g~~~~A~~~f~~m~----~~~~~~ 203 (614)
+. ..++.+.++.+|+.+++.....-..+|......-... +.+..|..+++... ..+...
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~ 174 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKN 174 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHH
Confidence 43 2456778888888888732211112222222211110 11222333332221 112334
Q ss_pred HHHHHHHHHhcCC-------hhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHH
Q 038206 204 WNVMIDAFVQFGE-------FDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVN 276 (614)
Q Consensus 204 ~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 276 (614)
|...+.--..++. .+.+..+|++.....+-+...|...+.-+...|+.+.+..+++...+. +.+...+
T Consensus 175 W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~ 249 (493)
T 2uy1_A 175 AARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHH
T ss_pred HHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHH
Confidence 5444433221110 223455666655444444555555555556666677777777666653 2222222
Q ss_pred HHHHHHHHhcCCHHH-HHHHHhcCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHH
Q 038206 277 NSLIDMYCKCGSLDI-ARQVFESMP------------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITF 343 (614)
Q Consensus 277 ~~li~~y~~~g~~~~-A~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~ 343 (614)
. .|+...+.++ ...+.+... ......|...+....+.+..+.|..+|.+. ...+ ++...|
T Consensus 250 ~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~ 322 (493)
T 2uy1_A 250 L----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVF 322 (493)
T ss_dssp H----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHH
T ss_pred H----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHH
Confidence 2 1221111000 011111100 001133444444444555566666666554 2221 122222
Q ss_pred H--HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 038206 344 V--GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK 421 (614)
Q Consensus 344 ~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 421 (614)
. +.+... ..++.+.|..+|+...+.++ -++..+...++...+.|+.+.|..+|++.. .....|...+.-- ..
T Consensus 323 i~~A~lE~~-~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE-~~ 396 (493)
T 2uy1_A 323 IYCAFIEYY-ATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYE-FM 396 (493)
T ss_dssp HHHHHHHHH-HHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHH-HH
T ss_pred HHHHHHHHH-HCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHH-HH
Confidence 2 111111 12245566666665555322 123334445555555566666666666552 2345555555443 55
Q ss_pred cCchHHHHHHHHHHH
Q 038206 422 HASVVLSEEVAKQVI 436 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~ 436 (614)
+|+.+.+..++++..
T Consensus 397 ~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 397 VGSMELFRELVDQKM 411 (493)
T ss_dssp HSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-06 Score=78.32 Aligned_cols=162 Identities=9% Similarity=-0.013 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----Ch
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-----VL 376 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~ 376 (614)
+..++..+...+...|+.++|++++.+. ...+..+ +...+..++..+.+.|+++.|.+.++.|.+ ..| +.
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~-i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d 174 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEG-IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDN 174 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHH-hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccch
Confidence 3444445555566666666666666554 2322211 234444555556666666666666666643 233 12
Q ss_pred hHHHHHHHH--HHH--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh----------cCC
Q 038206 377 EHYGCLVDL--LAR--AGNIDEALHLVSNM-PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES----------EGG 441 (614)
Q Consensus 377 ~~~~~li~~--~~~--~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----------~~~ 441 (614)
.+...|..+ ... .+++.+|..+|+++ ...|+..+-..++.++ ...|++++|++.++.+.+. +|.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~-~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLH-LQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHH-HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHH-HHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 333333333 222 22566666666665 2224422333333344 5566666666666655544 244
Q ss_pred CCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 442 ICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+.++..++..+...|+ +|.++++++.+
T Consensus 254 -~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 254 -KPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp -HHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 55555455555555554 56666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-06 Score=78.63 Aligned_cols=206 Identities=9% Similarity=0.017 Sum_probs=117.7
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMPK--R-D---LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVG 345 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ 345 (614)
...+-.+...+.+.|++++|...|+++.+ | + ...|..+...|.+.|++++|+..|++......-.|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34445555566666666666666665542 2 2 445556666666666666666666665222111122 233344
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 038206 346 VLSACNH--------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDA 417 (614)
Q Consensus 346 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 417 (614)
+..++.. .|++++|...|+.+.+...- +......+.......+.+. ..+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~---------------~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLA---------------RKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444545 66666666666666543211 1112111111110000000 113445556
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCC--chhHHHHHHHHhhc----------CChhhHHHHHHHHHhCCCccCCCccEEE
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGIC--SGVYVLLSRVYASA----------RRWNDVGLVRKLMTDKGVTKEPGCSSIE 485 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~~ 485 (614)
+ ...|+++.|...++++++..|... ...+..+..+|... |++++|...+++..+.. |
T Consensus 158 ~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p-------- 226 (261)
T 3qky_A 158 Y-ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P-------- 226 (261)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred H-HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence 6 889999999999999999988721 24677888888866 89999999999887632 2
Q ss_pred ECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHhh
Q 038206 486 IDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLKS 519 (614)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 519 (614)
.++...++...+..+..++.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 244556666666666665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-06 Score=83.14 Aligned_cols=202 Identities=9% Similarity=-0.009 Sum_probs=137.4
Q ss_pred CCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc---ccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C----
Q 038206 232 EPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD---VLVNNSLIDMYCKCGSLDIARQVFESMPK--R---- 302 (614)
Q Consensus 232 ~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~---- 302 (614)
+.+...+-.....+...|+++.|...+..+.+. .+.+ ...+..+...|.+.|++++|...|+...+ |
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 345566777778889999999999999999875 2223 56788889999999999999999998752 3
Q ss_pred CHHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC
Q 038206 303 DLTSWNSIILGFAL--------HGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP 374 (614)
Q Consensus 303 ~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 374 (614)
....+..+..++.. .|++++|+..|++. ... .|+..... .+...+......
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~--~p~~~~~~-------------~a~~~~~~~~~~----- 146 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF-IDR--YPNHELVD-------------DATQKIRELRAK----- 146 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH-HHH--CTTCTTHH-------------HHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH-HHH--CcCchhHH-------------HHHHHHHHHHHH-----
Confidence 24567777888888 99999999999998 442 34432111 111111111110
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhc----------CchHHHHHHHHHHHHhc
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKH----------ASVVLSEEVAKQVIESE 439 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~ 439 (614)
....+..+...|.+.|++++|...|++. ...|+ ...+..+..++ ... |++++|...++++++..
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~-~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY-IAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 0122456778888999999999988876 22233 34566666666 544 88899999999999998
Q ss_pred CCCCch---hHHHHHHHHhhcCCh
Q 038206 440 GGICSG---VYVLLSRVYASARRW 460 (614)
Q Consensus 440 ~~~~~~---~~~~l~~~~~~~g~~ 460 (614)
|+ +.. ....+...+.+.|++
T Consensus 226 p~-~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 PD-SPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp TT-CTHHHHHHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHHh
Confidence 88 543 233444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.6e-07 Score=86.09 Aligned_cols=234 Identities=11% Similarity=-0.004 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--C-CHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 153 QGKQAHAHIFKRGLVSDVYINNSLIHFYASC--G-HLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 153 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+|.+++.+..+.- ++....+ . .+ +. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~---~~-~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K---LF-SGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H---HH-SCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h---hc-CCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666666666653 3222222 2 22 22 2 478888877664 5567888999999998887754
Q ss_pred ccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCcc-ccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CC
Q 038206 230 LFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTD-VLVNNSLIDMYCKCGSLDIARQVFESMPK-----RD 303 (614)
Q Consensus 230 ~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~ 303 (614)
. + .+. |-+++ ..+++.+..+|.+.|++++|...|++..+ .+
T Consensus 66 ~--------------~----------------~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 66 Y--------------Q----------------KKA---GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp H--------------H----------------HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred H--------------H----------------HHh---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 0 000 11111 23455566666666666666665554331 11
Q ss_pred ----HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhc----CCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCC
Q 038206 304 ----LTSWNSIILGFALH-GRAEAALKYFDRLVVEE----SFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNIT 373 (614)
Q Consensus 304 ----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 373 (614)
..+|+.+...|... |++++|+..|++. ... +-.+. ..++..+...+...|++++|...|+...+...-.
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A-l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELA-GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 23566666677775 7777777777765 221 10001 2346666667777777777777777776521111
Q ss_pred CCh-----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHHH--hcCchHHHHHHHHHHHHh
Q 038206 374 PVL-----EHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAV------IWRSLLDACCK--KHASVVLSEEVAKQVIES 438 (614)
Q Consensus 374 p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~ 438 (614)
+.. ..|..+..++...|++++|...|++. .+.|+.. .+..++.++ . ..++++.|...|+++.+.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHHHHHHHTTSSCC
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHhccCCcc
Confidence 111 14556666777777777777777765 3344321 233344444 3 234556666665554443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8.1e-07 Score=73.87 Aligned_cols=131 Identities=17% Similarity=0.272 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDL 385 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 385 (614)
.|..+...+...|++++|+.+|+++ .... +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKA-LELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHH-HHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 4556666667777777777777766 3322 223455556666667777777777777776542 23345566677777
Q ss_pred HHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 386 LARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.+.|++++|.+.++++ ... .+..+|..+...+ ...|+++.|...++++.+..|.
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHccHHHHHHHHHHHHccCCC
Confidence 77777777777777765 222 3566677777777 7778888888888887776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-06 Score=82.18 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=43.8
Q ss_pred HHccCCcHHHHHHHHHHHHh----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHH
Q 038206 145 CAYLFAFSQGKQAHAHIFKR----GLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDA 210 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~ 210 (614)
+...|++++|...+....+. |-.++ ..+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44456666666655555442 21111 34555566666666666666655554411 01 2345555566
Q ss_pred HHhc-CChhHHHHHHHHhhh
Q 038206 211 FVQF-GEFDSALKLFRRMQI 229 (614)
Q Consensus 211 ~~~~-g~~~~A~~~~~~m~~ 229 (614)
|... |++++|+..|++...
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH
Confidence 6664 666666666665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-06 Score=76.32 Aligned_cols=182 Identities=10% Similarity=0.038 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK--RD----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVL 347 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll 347 (614)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++......-.|.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 444556667777888888888877652 32 2466667777888888888888888772222112221 1222222
Q ss_pred HHHhc------------------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHH
Q 038206 348 SACNH------------------RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAV 409 (614)
Q Consensus 348 ~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 409 (614)
.++.. .|+.++|...|+.+.+.+ +-+...+.++..+.. +..... .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~~-----------~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRLA-----------K 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHHH-----------H
Confidence 33322 345566666666654321 111212111111000 000000 0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS---GVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
....+...+ ...|+++.|...|+++++..|+ ++ ..+..+..+|.+.|++++|.+.++.+...+.
T Consensus 149 ~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 YEYSVAEYY-TERGAWVAVVNRVEGMLRDYPD-TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHH-HHcCcHHHHHHHHHHHHHHCcC-CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112334455 7889999999999999999888 44 4678899999999999999999998887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-05 Score=75.92 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=122.0
Q ss_pred CccccHHHHHHHHHHhcCCHHHHHHHHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-----c
Q 038206 270 VTDVLVNNSLIDMYCKCGSLDIARQVFESMPK-----RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-----N 339 (614)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-----~ 339 (614)
.++......+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++| +. ..| +
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~-~~--~~~d~~~~~ 173 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY-TN--AIEDTVSGD 173 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCccccccc
Confidence 34445556788889999999999999987632 35677888899999999999999999999 65 466 3
Q ss_pred HHHHHHHHHHHh----ccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------
Q 038206 340 SITFVGVLSACN----HRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM---------- 404 (614)
Q Consensus 340 ~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---------- 404 (614)
..+...+..++. ..++..+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 566666666632 234899999999998653 355333445555899999999999998764 21
Q ss_pred CC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 405 KP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 405 ~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
.| |..+...+|... ...|+ .|.++++++.+..|+ ++..
T Consensus 251 ~p~~~~~LaN~i~l~-~~lgk--~a~~l~~qL~~~~P~-hp~i 289 (310)
T 3mv2_B 251 VLYKPTFLANQITLA-LMQGL--DTEDLTNQLVKLDHE-HAFI 289 (310)
T ss_dssp HSSHHHHHHHHHHHH-HHTTC--TTHHHHHHHHHTTCC-CHHH
T ss_pred CCCCHHHHHHHHHHH-HHhCh--HHHHHHHHHHHhCCC-ChHH
Confidence 24 455554555544 45565 889999999999988 5543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=79.14 Aligned_cols=140 Identities=11% Similarity=0.003 Sum_probs=103.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 313 GFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
.+...|+.++|+..+... . ...|+. ..+..+-..|.+.|++++|.+.|+...+. -+-+...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a-~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGS-T--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHH-S--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHh-c--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 344567788888888765 2 234443 44556777788889999999888888753 22367788888889999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHH-HHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 392 IDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEE-VAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 392 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
+++|...|++. .+.| +..+|..+...+ ...|+.+++.+ .++++++..|. ++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELL-CKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 99999888876 4455 466788887777 78888766555 46889999998 88888888877777764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-05 Score=74.56 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=115.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH----HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVVEESFSPNSI----TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGC 381 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 381 (614)
.+..+...|++++|.+++++........|+.. .+..+...+...+++++|...|+...+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888899999999888722223334432 2334555667778899999999888763222223 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----CchhH
Q 038206 382 LVDLLARAGNIDEALHLVSNMP-------M-KPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CSGVY 447 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~ 447 (614)
+...|...|++++|...|++.- . .|. ..+|..+...| ...|++++|...++++++..+.. -..+|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y-~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL-YLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8899999999999988887651 1 122 23677788888 89999999999999998764331 14678
Q ss_pred HHHHHHHhhcCC-hhhHHHHHHHHH
Q 038206 448 VLLSRVYASARR-WNDVGLVRKLMT 471 (614)
Q Consensus 448 ~~l~~~~~~~g~-~~~a~~~~~~m~ 471 (614)
..+..+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999995 699999887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-05 Score=82.99 Aligned_cols=355 Identities=10% Similarity=0.002 Sum_probs=201.2
Q ss_pred ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCC-cHHHHHHHHH
Q 038206 82 DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFA-FSQGKQAHAH 160 (614)
Q Consensus 82 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~ 160 (614)
+++.|+.+|+.+. ..+-. |.++.+..+|++....- |+...|...++-..+.++ .+...++|+.
T Consensus 10 ~i~~aR~vyer~l-----------~~~P~--~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~ 73 (493)
T 2uy1_A 10 ELSSPSAIMEHAR-----------RLYMS--KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEF 73 (493)
T ss_dssp --CCHHHHHHHHH-----------HHHHT--TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHH
T ss_pred chHHHHHHHHHHH-----------HHCCC--CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3667777776653 22222 67999999999998854 888888888887766653 4567788888
Q ss_pred HHHh-CCCC-chhHHHHHHHHHH----hcCCHHHHHHHHhhcCC-C--Ch-hHHHHHHHHHH-------------hcCCh
Q 038206 161 IFKR-GLVS-DVYINNSLIHFYA----SCGHLDLANKVFDNMLE-R--SL-VSWNVMIDAFV-------------QFGEF 217 (614)
Q Consensus 161 ~~~~-g~~~-~~~~~~~li~~~~----~~g~~~~A~~~f~~m~~-~--~~-~~~~~li~~~~-------------~~g~~ 217 (614)
++.. |..+ +..+|...+..+. ..|+++.+.++|++... | +. ..|.....--. ..+.+
T Consensus 74 al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y 153 (493)
T 2uy1_A 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIF 153 (493)
T ss_dssp HHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence 7774 5433 5677888777654 34678899999998733 2 11 12222211100 01123
Q ss_pred hHHHHHHHHhhhcc-CCChhhHHHHHHHHHhh--Cc-----hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCH
Q 038206 218 DSALKLFRRMQILF-EPDGYTFQSITSACAGL--AT-----LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSL 289 (614)
Q Consensus 218 ~~A~~~~~~m~~~~-~pd~~t~~~ll~a~~~~--~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 289 (614)
..|..+++.+.... ..+...|...+.--... +. .+.+..+++.++.. .+.+..+|-..+..+.+.|++
T Consensus 154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~ 229 (493)
T 2uy1_A 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQK 229 (493)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCH
Confidence 33444444443321 11222333333322111 10 23345677777764 344567787788888888889
Q ss_pred HHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---c-----CC-Cc--cHHHHHHHHHHHhccCCH
Q 038206 290 DIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVE---E-----SF-SP--NSITFVGVLSACNHRGMV 356 (614)
Q Consensus 290 ~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~-----g~-~p--~~~t~~~ll~a~~~~g~~ 356 (614)
+.|..+|++.. ..+...|. .|+...+.++. ++.+... . +. .+ ....|...+....+.+..
T Consensus 230 ~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 230 EKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 88888887543 22333333 22222111222 2222010 0 00 11 123455555555566778
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
+.|+.+|+.. +..+ .+...|...+.+-.+.| +.+.|.++|+.. ..-| +...|...+.-. ...|+.+.|..+|+
T Consensus 303 ~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e-~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 303 ELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL-LRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 8898888887 3211 23444443333333334 588888888765 1112 344566666655 77788888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 434 QVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++ +. ....|...+..-...|+.+.+.++++++.+
T Consensus 379 r~----~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 379 RL----EK-TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HS----CC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HH----HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86 23 356677777777778888888887777653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-06 Score=75.71 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=114.2
Q ss_pred HHHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHH--
Q 038206 71 YSRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKA-- 144 (614)
Q Consensus 71 ~~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~-- 144 (614)
...+...+.. |++++|...|++..+ .+...|..+...+.+. |++++|+..|++..... |+. .+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~~---p~~-~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEY---QDN-SYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGGG---CCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhcc---CCh-HHHHHHHHHH
Confidence 3445555666 999999999999875 4567788888899999 99999999999887765 533 23332221
Q ss_pred HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C---ChhHHHHHHHHHHhcCChhH
Q 038206 145 CAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R---SLVSWNVMIDAFVQFGEFDS 219 (614)
Q Consensus 145 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~ 219 (614)
+...+....+...++..++.. +.+...+..+...|...|++++|...|++..+ | +...|..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233445788888888765 33577888899999999999999999988743 2 24578889999999999999
Q ss_pred HHHHHHHhhh
Q 038206 220 ALKLFRRMQI 229 (614)
Q Consensus 220 A~~~~~~m~~ 229 (614)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-06 Score=72.76 Aligned_cols=156 Identities=8% Similarity=-0.018 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH-
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSAC- 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~- 350 (614)
....+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++. .. ..|+.. +..+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a-~~--~~p~~~-~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI-PL--EYQDNS-YKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTC-CG--GGCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHh-hh--ccCChH-HHHHHHHHH
Confidence 455566778888889999888888773 36677888888888888888888888876 32 233322 22111101
Q ss_pred -hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhcCchHHH
Q 038206 351 -NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKP-DAVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 351 -~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~~a 428 (614)
...+....+...++...+ ..| +...+..+...+ ...|++++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~-----------------------------------~~P~~~~~~~~la~~~-~~~g~~~~A 127 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELA-----------------------------------ANPDNFELACELAVQY-NQVGRDEEA 127 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHH-----------------------------------HSTTCHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHhhcccchHHHHHHHHHH-----------------------------------hCCCCHHHHHHHHHHH-HHcccHHHH
Confidence 010011112333333322 123 345555555555 666666666
Q ss_pred HHHHHHHHHhcCCC-CchhHHHHHHHHhhcCChhhHHHHHHHH
Q 038206 429 EEVAKQVIESEGGI-CSGVYVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 429 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
...++++++..|.+ +...+..+..+|...|+.++|...+++.
T Consensus 128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 128 LELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 66666666666542 2345666666666666666666666544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=90.44 Aligned_cols=168 Identities=13% Similarity=-0.034 Sum_probs=117.3
Q ss_pred HccCCcHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhc
Q 038206 146 AYLFAFSQGKQAHAHIF--------KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQF 214 (614)
Q Consensus 146 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 214 (614)
...|++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 322 33556777778888888888888888887633 3566788888888888
Q ss_pred CChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHH
Q 038206 215 GEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQ 294 (614)
Q Consensus 215 g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (614)
|++++|++.|++..+..+-+...+..+-.++...|++++ ...++.+.+. -+.+...+..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST----NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh----CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888776534455666777777777777777 7777777765 23345677777788888888888888
Q ss_pred HHhcCCC--C-CHHHHHHHHHHHHhcCC
Q 038206 295 VFESMPK--R-DLTSWNSIILGFALHGR 319 (614)
Q Consensus 295 ~~~~m~~--~-~~~~~~~li~~~~~~g~ 319 (614)
.|++..+ | +...|..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8887763 3 34556666666544443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-05 Score=78.48 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSN 401 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~ 401 (614)
.+..+...+...|++++|...|++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444455555555555555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.2e-06 Score=78.49 Aligned_cols=170 Identities=8% Similarity=-0.012 Sum_probs=111.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcC
Q 038206 293 RQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYN 371 (614)
Q Consensus 293 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 371 (614)
.+.+......+...+..+...+.+.|++++|...|++. .. ..|+ ...+..+...+...|++++|...++.+..
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--- 179 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDA-WQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--- 179 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH-HH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---
Confidence 33333333334455556666677777777777777766 33 2343 34555666677777777777777776643
Q ss_pred CCCChhHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC--chh
Q 038206 372 ITPVLEHYGCL-VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC--SGV 446 (614)
Q Consensus 372 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 446 (614)
..|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+ ...|++++|...++++++..|. + ...
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l-~~~g~~~~A~~~l~~~l~~~p~-~~~~~a 257 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL-HQVGRNEEALELLFGHLRXDLT-AADGQT 257 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-GGGGHH
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcccc-cccchH
Confidence 23443322222 22345566666677766655 2234 566777777777 8888888888888888888887 4 667
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHH
Q 038206 447 YVLLSRVYASARRWNDVGLVRKLM 470 (614)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~~m 470 (614)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 888888888888888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.1e-06 Score=89.30 Aligned_cols=182 Identities=10% Similarity=-0.066 Sum_probs=147.9
Q ss_pred HcCCCCchHHHHHHHHHH--------HcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 109 ARSVDAKPQAIVLFQRMI--------EQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 109 ~~~~~~~~~A~~~~~~m~--------~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
... |++++|++.|++.. +.. + .+...+..+..++...|++++|.+.++.+++.. +.+...+..+..+|
T Consensus 402 ~~~-~~~~~A~~~~~~al~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVL-SQPVQTLDSLRAARHGALDADGVDF-S-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTT-CCHHHHHHHHHHHHTC-------CC-T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccc-cCHHHHHHHHHHhhhhccccccccc-c-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 566 99999999999998 443 2 355678888889999999999999999999875 44677889999999
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHH
Q 038206 181 ASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWA 257 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~ 257 (614)
.+.|++++|...|++.. ..+...|..+...|.+.|++++ ++.|++..+.-+-+...+..+..++...|+.++|...
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999873 2367789999999999999999 9999998776555677888999999999999999999
Q ss_pred HHHHHHhccCCCCc-cccHHHHHHHHHHhcC--------CHHHHHHHHhcCC
Q 038206 258 HAYILRHCDHSLVT-DVLVNNSLIDMYCKCG--------SLDIARQVFESMP 300 (614)
Q Consensus 258 ~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g--------~~~~A~~~~~~m~ 300 (614)
++.+.+. .| +...+..+..+|...| ++++|.+.+..+.
T Consensus 557 ~~~al~l-----~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPT-----SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTT-----STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhccc-----CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9887754 34 3567777777776644 3777888887775
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-06 Score=88.67 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=120.3
Q ss_pred cCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHH
Q 038206 286 CGSLDIARQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRD 361 (614)
Q Consensus 286 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 361 (614)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++. .. ..|+ ...+..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRG-LA--LHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HT--TSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999998763 36788999999999999999999999987 44 3454 5778888889999999999999
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc---CchHHHHHHHHHHH
Q 038206 362 YFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH---ASVVLSEEVAKQVI 436 (614)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~---~~~~~a~~~~~~~~ 436 (614)
.++...+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+ ... |+.++|.+.+++++
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR-RRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhhccccHHHHHHHHHHHH
Confidence 99999763 2336788999999999999999999999887 3344 577888888888 888 99999999999999
Q ss_pred HhcCCCCchhHHHHH
Q 038206 437 ESEGGICSGVYVLLS 451 (614)
Q Consensus 437 ~~~~~~~~~~~~~l~ 451 (614)
+.+|. +...|..+.
T Consensus 156 ~~~p~-~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVG-AVEPFAFLS 169 (568)
T ss_dssp HHTCC-CSCHHHHTT
T ss_pred hcCCc-ccChHHHhC
Confidence 99998 677776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.1e-06 Score=86.63 Aligned_cols=146 Identities=11% Similarity=-0.029 Sum_probs=102.1
Q ss_pred hCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 038206 248 LATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAAL 324 (614)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 324 (614)
.|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46778888888887764 23356788888889999999999999998765 236778888888999999999999
Q ss_pred HHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHH
Q 038206 325 KYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA---GNIDEALHLVS 400 (614)
Q Consensus 325 ~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~ 400 (614)
+.|++. ... .|+ ...+..+..++...|++++|.+.++...+. -+.+...+..+...+... |+.++|.+.++
T Consensus 78 ~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 78 VLLQQA-SDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHH-HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred HHHHHH-Hhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999887 442 343 467777888889999999999999988763 233567788888889888 99999998888
Q ss_pred hC
Q 038206 401 NM 402 (614)
Q Consensus 401 ~m 402 (614)
+.
T Consensus 153 ~a 154 (568)
T 2vsy_A 153 AA 154 (568)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-05 Score=73.29 Aligned_cols=132 Identities=9% Similarity=0.022 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhc
Q 038206 277 NSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNH 352 (614)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~ 352 (614)
+.+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++. .. +.|+ ..++..+..++..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI-LQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--cCCCCHHHHHHHHHHHHH
Confidence 345666666666666666666554 225566666666666677777777777665 33 2333 2444444444433
Q ss_pred cCC--HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038206 353 RGM--VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSL 414 (614)
Q Consensus 353 ~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 414 (614)
.|. .+.+...+.... ...|....+..+...+...|++++|...|++. ...|+......+
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 332 223333333331 11122222233344455566777777777664 555665544443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=72.77 Aligned_cols=100 Identities=7% Similarity=-0.053 Sum_probs=82.0
Q ss_pred CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.| +...+..+...+.+.|++++|.+.|++. ...| +...|..+-.++ ...|++++|...|+++++..|. ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~Ai~~~~~al~l~P~-~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY-QIKEQFQQAADLYAVAFALGKN-DYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSS-CCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHccHHHHHHHHHHHHhhCCC-CcHHHH
Confidence 444 3556777778888889999998888877 3345 577788887777 8889999999999999999998 888999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+..+|.+.|++++|...|++..+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999887764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=8.3e-07 Score=76.20 Aligned_cols=120 Identities=9% Similarity=-0.055 Sum_probs=98.6
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
..+...|++++|...+.... ...| +...+-.+...|.+.|++++|++.|++. .+.| +..+|..+-..+ ...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY-ELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTC
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCc
Confidence 34566788999999888764 3344 3445667899999999999999999987 4455 677888888888 99999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH-HHHHHh
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV-RKLMTD 472 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 472 (614)
++.|+..|+++++..|. ++.+|..+..+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999987765 466554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-05 Score=72.42 Aligned_cols=130 Identities=14% Similarity=0.127 Sum_probs=70.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh
Q 038206 176 LIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 252 (614)
+..+|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------- 117 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---------------------- 117 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------------
Confidence 5555556666666666665542 124455555666666666666666666555432
Q ss_pred HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC--HHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 038206 253 LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS--LDIARQVFESMPKRDLT--SWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
-+.+..++..+...|...|+ .+.+...|+....++.. .|..+-.++...|++++|+..|+
T Consensus 118 ----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 118 ----------------EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 12234455556665554433 34556666666655543 23334445566778888888888
Q ss_pred HHhhhcCCCccHHHHHHH
Q 038206 329 RLVVEESFSPNSITFVGV 346 (614)
Q Consensus 329 ~m~~~~g~~p~~~t~~~l 346 (614)
+. .. +.|+......+
T Consensus 182 ~a-l~--l~P~~~~~~~l 196 (208)
T 3urz_A 182 KV-IL--RFPSTEAQKTL 196 (208)
T ss_dssp HH-TT--TSCCHHHHHHH
T ss_pred HH-HH--hCCCHHHHHHH
Confidence 66 33 56665544433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.9e-05 Score=69.96 Aligned_cols=162 Identities=9% Similarity=-0.024 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhcCCCCChh
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRG----MVSEGRDYFDVMINEYNITPVLE 377 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~ 377 (614)
.+..++..+-..|...++.++|++.|++. ...| +...+..+-..|.. + +.++|..+|+...+. | +..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKA-AAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHH
Confidence 35566666666666777777777777766 4443 33444445555555 5 677777777777542 2 455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhcCCCCch
Q 038206 378 HYGCLVDLLAR----AGNIDEALHLVSNM-PMKPD---AVIWRSLLDACCKK----HASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 378 ~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
.+..|..+|.. .+++++|.++|++. ...|+ ...+..|-..+ .. .++.++|...|++..+.+ . ++.
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y-~~g~g~~~d~~~A~~~~~~A~~~~-~-~~~ 163 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY-ASGVHGPEDDVKASEYFKGSSSLS-R-TGY 163 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-HHTSSSSCCHHHHHHHHHHHHHTS-C-TTH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHcC-C-CHH
Confidence 66667677765 67788888887776 32332 56666666666 55 567888888888887772 2 455
Q ss_pred hHHHHHHHHhhc-C-----ChhhHHHHHHHHHhCCC
Q 038206 446 VYVLLSRVYASA-R-----RWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 446 ~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 475 (614)
.+..|..+|... | ++++|...+++..+.|.
T Consensus 164 a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 164 AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 677777777653 3 78888888887766654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-05 Score=75.84 Aligned_cols=157 Identities=9% Similarity=-0.015 Sum_probs=87.6
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHH-HHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--RSLVSW-NVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~-~~li~~ 210 (614)
+...+..+...+...|++++|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555556666777777777777776654 23455666666777777777777777776643 222211 112223
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
+.+.++.++|+..|++....- +.+...+..+...|...|+++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~--------------------------------------P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN--------------------------------------PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC--------------------------------------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcC--------------------------------------CccHHHHHHHHHHHHHcccHH
Confidence 445556666666665554332 223445555555555556666
Q ss_pred HHHHHHhcCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 291 IARQVFESMP--KR---DLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 291 ~A~~~~~~m~--~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
+|...|.++. .| +...+..+...|...|+.++|...|++
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 6555555544 12 144556666666666666666655554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-05 Score=77.15 Aligned_cols=222 Identities=12% Similarity=0.095 Sum_probs=145.5
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHH
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIAR 293 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 293 (614)
.|++++|.+++++..+..+.. + +...++++.+... |+.....|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---~------~~~~~~~~~A~~~------------------~~~a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---F------MKWKPDYDSAASE------------------YAKAAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---S------SSCSCCHHHHHHH------------------HHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---c------cCCCCCHHHHHHH------------------HHHHHHHHHHcCCHHHHH
Confidence 466777888777776542211 0 0012444444443 444456677889998888
Q ss_pred HHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hcCCCcc-HHHHHHHHHHHhccCCHHHHH
Q 038206 294 QVFESMPK-----RD----LTSWNSIILGFALHGRAEAALKYFDRLVV---EESFSPN-SITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 294 ~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~~g~~p~-~~t~~~ll~a~~~~g~~~~a~ 360 (614)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++... ..|-.+. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88776541 11 35788888899999999999999987621 1121111 3567777788888 9999999
Q ss_pred HHHHHHHHhcC---CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHhcCchHHH
Q 038206 361 DYFDVMINEYN---ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PM---KPD----AVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 361 ~~~~~~~~~~~---~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~~~~~~~a 428 (614)
..|+...+-.. -.+ ...++..+...|.+.|++++|++.|++. .+ .++ ...+..+...+ ...|+++.|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ-LHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH-HHcCCHHHH
Confidence 99998765321 111 1467888999999999999999999876 11 122 22555566666 777999999
Q ss_pred HHHHHHHHHhcCCCCc----hhHHHHHHHHhhcCChhhHHHH
Q 038206 429 EEVAKQVIESEGGICS----GVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 429 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
...+++.+ ..|.... .....++.+| ..|+.+.+..+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999999 7765211 1233455555 56776665553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-05 Score=71.38 Aligned_cols=142 Identities=8% Similarity=-0.017 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHH
Q 038206 278 SLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVS 357 (614)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~ 357 (614)
.+...|...|++++|...|++...++...|..+...|...|++++|++.|++. .... +.+...+..+..++...|+++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS-INRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-ccchHHHHHHHHHHHHcccHH
Confidence 34445555555555555555555555555555555555555555555555544 2211 112233444444444455555
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 358 EGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 358 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
+|...|+...+...-.+... +...| +...|+ ...|..+...+ ...|+++.|...++++.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHH-HHccCHHHHHHHHHHHH
Confidence 55554444433111000000 00000 012222 35666677777 88889999999999888
Q ss_pred HhcCC
Q 038206 437 ESEGG 441 (614)
Q Consensus 437 ~~~~~ 441 (614)
+..|.
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 88776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-05 Score=70.78 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILG 313 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~ 313 (614)
.+..+...+...|+++.|...+..+ +.|+..++..+...|.+.|++++|...|++.. ..+...|..+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3445566778899999999888755 35577899999999999999999999998765 3477899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhh
Q 038206 314 FALHGRAEAALKYFDRLVVE 333 (614)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~ 333 (614)
|...|++++|++.|++. ..
T Consensus 81 ~~~~~~~~~A~~~~~~a-l~ 99 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEA-LI 99 (213)
T ss_dssp HHHTTCHHHHHHHHHHH-HH
T ss_pred HHHcccHHHHHHHHHHH-HH
Confidence 99999999999999988 44
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=66.73 Aligned_cols=113 Identities=5% Similarity=-0.053 Sum_probs=72.8
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+...-..+.+.|++++|.+.|+..++. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 44555566667777777777777776542 2235666677777777777777777777665 3333 455666
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
.+..++ ...|++++|.+.|+++++..|. +...+..|.+
T Consensus 86 ~lg~~~-~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACL-VAMREWSKAQRAYEDALQVDPS-NEEAREGVRN 123 (126)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHHHH
Confidence 666666 7777777777777777777777 6665555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00073 Score=64.88 Aligned_cols=132 Identities=8% Similarity=-0.041 Sum_probs=83.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC--CcHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc--
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF--AFSQGKQAHAHIFKRGLVSDVYINNSLIHFY----ASC-- 183 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----~~~-- 183 (614)
...++|+.++..++..+ |+.. .|+.--..+...+ +++++++.++.++.... -+..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccc
Confidence 45567888888888776 5544 3555555666666 78888888888877653 2444555444444 444
Q ss_pred -CCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChh--HHHHHHHHhhhccCCChhhHHHHHHHHHhh
Q 038206 184 -GHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFD--SALKLFRRMQILFEPDGYTFQSITSACAGL 248 (614)
Q Consensus 184 -g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~ 248 (614)
+++++++.+++.+. .+|..+|+--...+.+.|.++ ++++.++++.+.-+-|-..|+.-.......
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 67788888887773 345667777666777777777 888888887765344444554433333333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-05 Score=64.05 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM-KPDAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|.++++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44455555566666666666666666542 1234556666667777777777777776665 11 23556667777777
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA 457 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (614)
...|+++.|...++++.+..|. +...+..+..++...
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 -YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred -HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 7777888888888888777777 666666666655543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-05 Score=70.27 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=31.5
Q ss_pred CChhHHHHHHhcCCC--CCh----hhHHHHHHHHHcCCCCchHHHHHHHHHHHcC
Q 038206 81 ADLDYAFRVFYQIEN--PNS----FTWNTLIRACARSVDAKPQAIVLFQRMIEQG 129 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~~~----~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~ 129 (614)
|++++|...|+++.. |+. ..+..+..++.+. |++++|+..|++..+..
T Consensus 18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC
Confidence 777777777776643 321 3455566667777 77777777777777665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.5e-05 Score=67.61 Aligned_cols=126 Identities=6% Similarity=-0.101 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~- 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN- 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-
Confidence 3445555666777777777777776552 2235667777777888888888888877765 2233 566777777777
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHH--HHHHHhhcCChhhHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVL--LSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...|++++|...++++.+..|. +...+.. ++..+.+.|++++|.+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888999999999999988887 6666644 3444778899999988887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.5e-05 Score=72.35 Aligned_cols=164 Identities=10% Similarity=-0.001 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcC-CCccH----HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCC--CCC--h
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEES-FSPNS----ITFVGVLSACNHRGMVSEGRDYFDVMINEYNI--TPV--L 376 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~ 376 (614)
.+...+..+...|++++|++.+.+. .... ..++. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNE-LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH-hccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777888888888888766 3322 11211 22333445567778889998888887642111 111 4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC----
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM----PMKPD-----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---- 443 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 443 (614)
..++.+...|...|++++|...|++. ...|+ ..++..+...| ...|++++|...+++.++.....+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y-~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL-YLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH-HHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 47888888999999999988888765 11222 25777788888 899999999999999887642211
Q ss_pred -chhHHHHHHHHhhcCChhhH-HHHHHHHH
Q 038206 444 -SGVYVLLSRVYASARRWNDV-GLVRKLMT 471 (614)
Q Consensus 444 -~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 471 (614)
..+|..+..+|.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46778899999999999999 77676654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=64.48 Aligned_cols=117 Identities=9% Similarity=-0.039 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038206 340 SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDA 417 (614)
Q Consensus 340 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 417 (614)
...+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666677777777777777777652 2335667777778888888888888877765 2233 46677777777
Q ss_pred HHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 418 CCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 418 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
+ ...|+++.|...++++.+..|. +...+..+..++.+.|++
T Consensus 90 ~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 L-SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp H-HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred H-HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 7 8888899999999998888887 777888888888877765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=66.73 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++ ...|++++|+..++++++.+|. +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACL-TKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHH-HhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 4553 456777888999999999999999986 4445 677888888888 9999999999999999999999 899999
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|.+.|++..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0001 Score=70.90 Aligned_cols=147 Identities=7% Similarity=-0.058 Sum_probs=74.0
Q ss_pred CChhHHHHHHhcCCC-----CCh---h-hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----chHHHHHHHHHc
Q 038206 81 ADLDYAFRVFYQIEN-----PNS---F-TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----HTFPFALKACAY 147 (614)
Q Consensus 81 g~~~~A~~~f~~m~~-----~~~---~-~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~ 147 (614)
|++++|...+++... |+. . .+..+...+... +++++|+..|++........++. .+++.+...+..
T Consensus 89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 666666666655432 110 1 122233334444 56666666666666533221221 135555556666
Q ss_pred cCCcHHHHHHHHHHHHh-----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C-----ChhHHHHHHHHHH
Q 038206 148 LFAFSQGKQAHAHIFKR-----GLVSD-VYINNSLIHFYASCGHLDLANKVFDNMLE----R-----SLVSWNVMIDAFV 212 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~-----~~~~~~~li~~~~ 212 (614)
.|++++|...++.+++. +..+. ..++..+...|.+.|++++|...+++..+ . -..+|..+...|.
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 66666666666665531 11111 22455566666666666666666554411 0 0335555566666
Q ss_pred hcCC-hhHHHHHHHHhh
Q 038206 213 QFGE-FDSALKLFRRMQ 228 (614)
Q Consensus 213 ~~g~-~~~A~~~~~~m~ 228 (614)
+.|+ +++|++.|++..
T Consensus 248 ~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HTTCCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 6663 366666555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-05 Score=68.37 Aligned_cols=159 Identities=11% Similarity=0.006 Sum_probs=86.4
Q ss_pred CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccC----CcHHHHHHHHHHHHhCCCCchh
Q 038206 96 PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLF----AFSQGKQAHAHIFKRGLVSDVY 171 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~ 171 (614)
.++.++..+-..|... +++++|++.|++..+.| +...+..+-..+.. + +.++|.+.++...+.| ++.
T Consensus 16 g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3455555555555555 66666666666665543 33444445555554 4 6666666666665544 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHh----cCChhHHHHHHHHhhhccCCChhhH
Q 038206 172 INNSLIHFYAS----CGHLDLANKVFDNMLERS-----LVSWNVMIDAFVQ----FGEFDSALKLFRRMQILFEPDGYTF 238 (614)
Q Consensus 172 ~~~~li~~~~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~pd~~t~ 238 (614)
.+..|-.+|.. .++.++|...|++..+.+ ..++..|...|.. .+++++|+..|++.... .++...+
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 55555556655 566666666666654432 3566666666666 55666666666665443 2233333
Q ss_pred HHHHHHHHhh-C-----chhHHHHHHHHHHHh
Q 038206 239 QSITSACAGL-A-----TLSLGMWAHAYILRH 264 (614)
Q Consensus 239 ~~ll~a~~~~-~-----~~~~~~~~~~~~~~~ 264 (614)
..+-..+... + +.+.|...++...+.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3333333221 1 445555555554444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.1e-05 Score=73.77 Aligned_cols=162 Identities=10% Similarity=-0.002 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcC---CCcc--H
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP---KRDL------TSWNSIILGFALHGRAEAALKYFDRLVVEES---FSPN--S 340 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g---~~p~--~ 340 (614)
.+...+..+...|++++|.+.+++.. ..+. ..+..+...+...|++++|+..+++. .... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKL-LNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH-HTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcCCchHHHH
Confidence 44556778889999999998887543 1111 23444556677889999999999887 3321 1122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH---hcCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-C------CCCC-
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMIN---EYNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM-P------MKPD- 407 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p~- 407 (614)
.+++.+...|...|++++|..+|+...+ ..+..+ ...++..+...|.+.|++++|.+.+++. . ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4778888899999999999999998873 222222 1257888999999999999999998875 1 1111
Q ss_pred HHHHHHHHHHHHHhcCchHHH-HHHHHHHHHh
Q 038206 408 AVIWRSLLDACCKKHASVVLS-EEVAKQVIES 438 (614)
Q Consensus 408 ~~~~~~ll~~~~~~~~~~~~a-~~~~~~~~~~ 438 (614)
..+|..+...+ ...|+.++| ...++++...
T Consensus 236 ~~~~~~lg~~y-~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECL-RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHH
Confidence 56777787787 899999999 7778887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=63.59 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444444445555555555555555432 11223444555555555555555555555544 1122 445555555566
Q ss_pred HHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
...|++++|.+.++++.+..|. +...+..+..++.+.|
T Consensus 95 -~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 -EAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp -HHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred -HHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 6667777777777777776666 5566666666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-06 Score=69.35 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=79.2
Q ss_pred CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHH
Q 038206 372 ITP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYV 448 (614)
Q Consensus 372 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (614)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+-.++ ...|++++|...|+++++..|. ++..+.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~-~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACR-QAMGQYDLAIHSYSYGAVMDIX-EPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTT-CTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CchHHH
Confidence 344 4556667778888888888888888876 3334 677777777777 8888999999999999999888 888888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|...+++..+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 889999999999999998887765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=69.14 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc--HHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN--SITFVGVLSAC 350 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~--~~t~~~ll~a~ 350 (614)
+.-.+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+.. .... .|. ...+..+-.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHHHHHHHHHHH
Confidence 34456677788888899988888886 343335555556777888888888888754 2211 221 23455566677
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPV--LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|++++|...|+.... ....|. .........++.+.|+.++|...|+++
T Consensus 182 ~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 ANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778888888888877753 122143 234445556666777777777777665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-05 Score=76.18 Aligned_cols=144 Identities=12% Similarity=-0.020 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCL 382 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 382 (614)
+...|..+...|.+.|++++|+..|++. ... .|+...+ ..+.+.++- . -....|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~A-l~~--~p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKI-VSW--LEYESSF-----------SNEEAQKAQ-A--------LRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHH--TTTCCCC-----------CSHHHHHHH-H--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHH--hhccccC-----------ChHHHHHHH-H--------HHHHHHHHH
Confidence 3456666677777777777777777765 321 2221100 001111100 0 014577788
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
..+|.+.|++++|++.+++. ...| +...|..+-.++ ...|++++|+..|+++++..|. +...+..+..++.+.|++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH-LAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 88889999999999888876 3334 677888888888 9999999999999999999999 888999999999999999
Q ss_pred hhH-HHHHHHHH
Q 038206 461 NDV-GLVRKLMT 471 (614)
Q Consensus 461 ~~a-~~~~~~m~ 471 (614)
++| ...++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988 44555553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=70.56 Aligned_cols=149 Identities=13% Similarity=-0.006 Sum_probs=107.0
Q ss_pred CChhHHHH---HHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcC----CCCCCcchHHHHHHHHHccCCcHH
Q 038206 81 ADLDYAFR---VFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQG----NVLPDKHTFPFALKACAYLFAFSQ 153 (614)
Q Consensus 81 g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~----~~~p~~~t~~~ll~~~~~~~~~~~ 153 (614)
|++++|.+ .+..-+......|+.+-..+... |++++|+..|++..... .......++..+...+...|++++
T Consensus 6 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLAHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88999998 66554444566788888888888 99999999998887621 110123456667777888899999
Q ss_pred HHHHHHHHHHh----CCCC--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChh
Q 038206 154 GKQAHAHIFKR----GLVS--DVYINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 154 a~~~~~~~~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~ 218 (614)
|...+.+..+. +-.+ ...++..+...|...|++++|...|++..+ .+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99888887664 2111 244577788888899999999888877521 12 224577788888899999
Q ss_pred HHHHHHHHhhhc
Q 038206 219 SALKLFRRMQIL 230 (614)
Q Consensus 219 ~A~~~~~~m~~~ 230 (614)
+|...+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.06 E-value=8.3e-06 Score=78.17 Aligned_cols=188 Identities=9% Similarity=-0.036 Sum_probs=114.4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHH
Q 038206 273 VLVNNSLIDMYCKCGSLDIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLS 348 (614)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~ 348 (614)
...+..+...|.+.|++++|...|++.. .| +...|..+...|.+.|++++|+..+++. .. +.|+ ...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA-LE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TT--SCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HH--hCCCCHHHHHHHHH
Confidence 3455666777777888888888777654 23 6677777778888888888888888766 33 3443 356666777
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCch
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITP---VLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 425 (614)
++...|++++|...|....+...-.+ ....+..+ ...+...+.. .......++...... +..+ . .|+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~-l~~l-~-~~~~ 151 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSY-LTRL-I-AAER 151 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHH-HHHH-H-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHH-HHHH-H-HHHH
Confidence 77888888888888877654211001 11111111 1122111111 122222233333333 3333 3 5788
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc-CChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASA-RRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 473 (614)
++|.+.++++.+..|. +......+...+.+. +++++|.++|.+..+.
T Consensus 152 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 152 ERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888887776 555555666666665 7788999999887653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.5e-05 Score=72.98 Aligned_cols=187 Identities=10% Similarity=0.001 Sum_probs=107.9
Q ss_pred CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 038206 134 DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDA 210 (614)
Q Consensus 134 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~ 210 (614)
+...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...++...+. +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34456666667777788888888888777764 335667777888888888888888888876442 45678888888
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
|.+.|++++|+..|++.....+-+...+...+....... .. ..+...... ..+.+..+...+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~---~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KK-KRWNSIEER---RIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HH-HHHHHHHHT---CCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HH-HHHHHHHHH---HHhhhHHHHHHHHHHH--HHHHH
Confidence 888899999988888876541101111111111111100 11 111112222 3444555544443332 57777
Q ss_pred HHHHHHhcCCC--CC-HHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 038206 291 IARQVFESMPK--RD-LTSWNSIILGFALH-GRAEAALKYFDRL 330 (614)
Q Consensus 291 ~A~~~~~~m~~--~~-~~~~~~li~~~~~~-g~~~~A~~l~~~m 330 (614)
+|.+.++...+ |+ ......+-..+.+. +..++|.++|.+.
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777766542 32 22233333333333 4566777777665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=69.77 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=88.1
Q ss_pred hccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHhcCch--
Q 038206 351 NHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDA-CCKKHASV-- 425 (614)
Q Consensus 351 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~~~~~-- 425 (614)
...|++++|...++...+. -+.+...+..+...|...|++++|...|++. ...| +...|..+... + ...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~-~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLY-YQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH-HHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhcCCcch
Confidence 4567777888888777653 2345677888888888888888888888776 2223 56667767666 5 677887
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.|...++++++..|. +...+..+..+|...|++++|...+++..+.
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8899999999888888 7888888888899999999999998887764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.05 E-value=9e-05 Score=63.96 Aligned_cols=126 Identities=9% Similarity=0.003 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+...+... |++++|...|++..... + .+...+..+...+...|++++|...+...++.. +.+..++..+..
T Consensus 14 ~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKA-KDYENAIKFYSQAIELN-P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455666667777 88888888888777765 1 245566666677777788888888877777764 335566777777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHH--HHHHHhcCChhHHHHHHHHhh
Q 038206 179 FYASCGHLDLANKVFDNMLE---RSLVSWNVM--IDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 228 (614)
+|.+.|++++|...|++..+ .+...+..+ ...+.+.|++++|++.+.+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776622 233444333 333666677777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.02 E-value=6.6e-05 Score=67.43 Aligned_cols=152 Identities=13% Similarity=0.067 Sum_probs=79.1
Q ss_pred hcCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----cCCCcc-HHHHHHHHHHHhccCCH
Q 038206 285 KCGSLDIARQ---VFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVE----ESFSPN-SITFVGVLSACNHRGMV 356 (614)
Q Consensus 285 ~~g~~~~A~~---~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~g~~p~-~~t~~~ll~a~~~~g~~ 356 (614)
..|++++|.+ ++..-+.....++..+...|...|++++|+..+++. .. .+..|. ..++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL-QQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH-HHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4567777777 554433334556666677777777777777777665 22 122222 24455555566667777
Q ss_pred HHHHHHHHHHHHh---cCCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcC
Q 038206 357 SEGRDYFDVMINE---YNITP--VLEHYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHA 423 (614)
Q Consensus 357 ~~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~ 423 (614)
++|...++...+. .+-.| ....+..+...+...|++++|.+.+++. +..++ ..++..+...+ ...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLA-QQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-HHCc
Confidence 7777766665442 11111 1234555566666666666666665543 00111 11233444444 5556
Q ss_pred chHHHHHHHHHHHHh
Q 038206 424 SVVLSEEVAKQVIES 438 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (614)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666665555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-05 Score=69.73 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
+-.+...+...|++++|.++|..+... .|+....-.+...+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---------------------------------------~p~~~~~~~~a~l~ 145 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---------------------------------------GSEHLVAWMKAVVY 145 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---------------------------------------CCchHHHHHHHHHH
Confidence 345667788889999999998877532 12221444555688
Q ss_pred HhcCCHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH--HHHHHHHHHHhccCCH
Q 038206 284 CKCGSLDIARQVFESMPKR-D----LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS--ITFVGVLSACNHRGMV 356 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~m~~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~--~t~~~ll~a~~~~g~~ 356 (614)
.+.|++++|+..|+..... + ...+..+-.++.+.|++++|+..|++. ......|.. ......-.++.+.|+.
T Consensus 146 ~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a-~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 146 GAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEA-NDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHH-hcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 8899999999999866532 2 236777788899999999999999987 433332542 2444555678889999
Q ss_pred HHHHHHHHHHHHh
Q 038206 357 SEGRDYFDVMINE 369 (614)
Q Consensus 357 ~~a~~~~~~~~~~ 369 (614)
++|...|+.+...
T Consensus 225 deA~~~l~~a~a~ 237 (282)
T 4f3v_A 225 SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=58.68 Aligned_cols=87 Identities=14% Similarity=0.199 Sum_probs=37.1
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCCh
Q 038206 141 ALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEF 217 (614)
Q Consensus 141 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~ 217 (614)
+...+...|+++.|.+.+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 3333334444444444444443332 1223334444444444444444444444431 12333444455555555555
Q ss_pred hHHHHHHHHhh
Q 038206 218 DSALKLFRRMQ 228 (614)
Q Consensus 218 ~~A~~~~~~m~ 228 (614)
++|...|+++.
T Consensus 94 ~~A~~~~~~~~ 104 (125)
T 1na0_A 94 DEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-05 Score=63.72 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...+..+...+.+.|++++|...|++. ...| +...|..+-..+ ...|+++.|...|+++++.+|. ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR-QSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344555666777788888888888775 2334 566677776676 8888888888888888888888 78888888888
Q ss_pred HhhcCChhhHHHHHHHHHh
Q 038206 454 YASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 454 ~~~~g~~~~a~~~~~~m~~ 472 (614)
|...|++++|.+.+++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887655
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0033 Score=60.24 Aligned_cols=212 Identities=7% Similarity=-0.026 Sum_probs=125.3
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhhcCC---CChhHHHHHHHHH----Hhc---CCh
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG--HLDLANKVFDNMLE---RSLVSWNVMIDAF----VQF---GEF 217 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~----~~~---g~~ 217 (614)
.-++|.++.+.++... +-+..+|+.--..+...| +++++++.++.+.. .+..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888898888875 334556777777777788 89999999988733 3556677654444 444 788
Q ss_pred hHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh--HHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC------H
Q 038206 218 DSALKLFRRMQILFEPDGYTFQSITSACAGLATLS--LGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS------L 289 (614)
Q Consensus 218 ~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~------~ 289 (614)
++++++++++...-+-|..+|..---.....+..+ ........+++. -+.|...|+.-.....+.|. +
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 89999998887665556666666655556666665 666666666654 23344455554444545444 5
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhhcC--CCccHHHHHHHHHHHhccCCHHHHHHHH
Q 038206 290 DIARQVFESMP---KRDLTSWNSIILGFALHGRAEA-ALKYFDRLVVEES--FSPNSITFVGVLSACNHRGMVSEGRDYF 363 (614)
Q Consensus 290 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 363 (614)
+++.+.++++. ..|...|+-+-..+.+.|+... +.++..+. ...+ -..+...+..+...+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQF-VDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT-EEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHH-HhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55555555443 2355566655555555555333 33344433 2111 0123344444555555555555555555
Q ss_pred HHHH
Q 038206 364 DVMI 367 (614)
Q Consensus 364 ~~~~ 367 (614)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.1e-05 Score=61.11 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=86.9
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|...++++.+..|. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACY-TKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 35677888999999999999999999986 4445 677888888888 9999999999999999999998 889999999
Q ss_pred HHHhhcCChhhHHHHHHHHHhC
Q 038206 452 RVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
.+|.+.|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999987653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=7.3e-05 Score=61.42 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
..+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|+..++++++..|. +...|..+..+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL-AKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34555666677777777777777765 2233 466677676666 7778888888888888888777 777777888888
Q ss_pred hhcCChhhHHHHHHHHHh
Q 038206 455 ASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~ 472 (614)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 888888888888877655
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.8e-05 Score=65.90 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcCCH--HHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHF-YASCGHL--DLA 189 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~~A 189 (614)
|++++|+..|++..... + .+...+..+...+...|++++|...++.+++.. +.+...+..+..+ |...|++ ++|
T Consensus 24 ~~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-P-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ---CCCCHHHHHHHHHC-C-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 77888888888887765 2 355677777788888888888888888888765 3356677777777 7788887 888
Q ss_pred HHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 190 NKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 190 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
...|+... ..+...|..+...|...|++++|+..|++....
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888763 235667888888888999999999998888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00018 Score=58.92 Aligned_cols=114 Identities=11% Similarity=-0.042 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+...+... |++++|+..|++..... + .+...+..+...+...|++++|.+.+....+.. +.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKV-ENFEAAVHFYGKAIELN-P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3455555556666 66666666666666554 1 234455555556666666666666666666543 223445555556
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCC
Q 038206 179 FYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGE 216 (614)
Q Consensus 179 ~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~ 216 (614)
.|.+.|++++|...|++.. ..+...+..+...+.+.|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666665542 1234455555555555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00013 Score=60.81 Aligned_cols=97 Identities=11% Similarity=0.034 Sum_probs=74.5
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 374 PVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+ ...|+++.|...++++++..|. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 35666777777788888888888877765 2233 466677777666 7888888888888888888888 778888888
Q ss_pred HHHhhcCChhhHHHHHHHHHh
Q 038206 452 RVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+|...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888887765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.91 E-value=9e-05 Score=63.22 Aligned_cols=103 Identities=10% Similarity=0.023 Sum_probs=67.7
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+..+-..+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34443 34455555666777777777777777542 2235666777777777777777777777765 3334 355666
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.+-.++ ...|++++|...|+++++..|+
T Consensus 109 ~lg~~~-~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQ-LRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhCCC
Confidence 666666 7777778888888777777766
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=65.29 Aligned_cols=170 Identities=8% Similarity=-0.059 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-cCCCccHHHHHHHHHHHhccCC
Q 038206 280 IDMYCKCGSLDIARQVFESMPKR---DLTSWNSIILGFALHGRAEAALKYFDRLVVE-ESFSPNSITFVGVLSACNHRGM 355 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~g~~p~~~t~~~ll~a~~~~g~ 355 (614)
+......|++++|.+.|+.-.+. ....|..+...+...|++++|+..|++. .. ..-.|+.... .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~~~~~~~~~~--~--------- 78 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA-LDFFIHTEEWDDQ--I--------- 78 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTTTCTTCCCH--H---------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcccccchh--h---------
Confidence 33344456666666666543321 3345666666677777777777777766 33 1112211000 0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Q 038206 356 VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAK 433 (614)
Q Consensus 356 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~ 433 (614)
...- -.. .....+..+..+|.+.|++++|...+++. ...| +...|..+..++ ...|+++.|...|+
T Consensus 79 ~~~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 79 LLDK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN-MYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcccHHHHHHHHH
Confidence 0000 000 01356677788888888888888888776 2234 567777787788 88899999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhhcCChhhHH-HHHHHHHhCC
Q 038206 434 QVIESEGGICSGVYVLLSRVYASARRWNDVG-LVRKLMTDKG 474 (614)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~g 474 (614)
++++..|. +...+..+..++...|+.+++. ..++.|...+
T Consensus 147 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 147 KAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998 8888888888888888887777 5555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.01 Score=57.62 Aligned_cols=179 Identities=8% Similarity=0.042 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLF-AFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
++.+-....+. +..++|+++++.++..+ |+.. .|+.--..+...+ +++++.+.++.+++.. +-+..+|+.--.
T Consensus 57 ~~~~r~~~~~~-e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKE-EKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTT-CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33333344444 66778999999998887 5544 4565555566667 5888999999888765 346667777766
Q ss_pred HHHhc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhcCChh--------HHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 179 FYASC-G-HLDLANKVFDNMLER---SLVSWNVMIDAFVQFGEFD--------SALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 179 ~~~~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
++.+. + +.++++++++.+.+. |..+|+--...+.+.|.++ ++++.++++.+.-+-|...|+-.-...
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66666 6 788888888888654 4556665555555555555 788888877765445556666555555
Q ss_pred HhhCc-------hhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 246 AGLAT-------LSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 246 ~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
.+.+. ++++.+.....+.. .+.|...|+-+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCC
Confidence 55443 34444444444443 23344555554444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00024 Score=56.86 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=42.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc
Q 038206 345 GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH 422 (614)
Q Consensus 345 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~ 422 (614)
.+...+...|++++|...++...+. .+.+...+..+...+.+.|++++|...+++. ...| +...|..+...+ ...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL-EFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHH
Confidence 3333444444444444444444331 1123344444444455555555555544443 1122 344444444444 555
Q ss_pred CchHHHHHHHHHHHHhcCC
Q 038206 423 ASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~ 441 (614)
|+++.|...+++..+..|.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTT
T ss_pred hhHHHHHHHHHHHHHcCCC
Confidence 5555555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.6e-05 Score=64.72 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDAC 418 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 418 (614)
..+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+-..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444444555555555555555555432 1123444445555555555555555555443 2222 244444444444
Q ss_pred HHhcCchHHHHHHHHHHHHhcCC
Q 038206 419 CKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 419 ~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|++++|...|+++++..|.
T Consensus 90 -~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 90 -FDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp -HHTTCHHHHHHHHHHHHHHHSS
T ss_pred -HHccCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00014 Score=58.38 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
....+..+...+...|++++|.+.|++. ...| +...|..+...+ ...|+++.|...++++.+..|. +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY-AKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3456778888999999999999999987 3334 677888888888 8999999999999999999998 8889999999
Q ss_pred HHhhcCChhhHHHHHHHHHhC
Q 038206 453 VYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 453 ~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+|...|++++|.+.+++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00017 Score=60.73 Aligned_cols=93 Identities=19% Similarity=0.140 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLS 451 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 451 (614)
..+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+ ...|++++|...++++.+..|. +...+..+.
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACH-LKLEDYDKAETEASKAIEKDGG-DVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH-HHHccHHHHHHHHHHHHhhCcc-CHHHHHHHH
Confidence 33444444444444444444444443 22333 23344444444 4444555555555555544444 444444444
Q ss_pred HHHhhcCChhhHHHHHHHHH
Q 038206 452 RVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 452 ~~~~~~g~~~~a~~~~~~m~ 471 (614)
.+|...|++++|...+++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.3e-05 Score=60.77 Aligned_cols=93 Identities=13% Similarity=-0.051 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS 456 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (614)
+..+...+.+.|++++|...|++. ...| +...|..+-..+ ...|++++|+..++++++..|. +...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445667788889999999888876 3345 667777777777 8889999999999999999998 88888899999999
Q ss_pred cCChhhHHHHHHHHHhC
Q 038206 457 ARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 457 ~g~~~~a~~~~~~m~~~ 473 (614)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00021 Score=58.61 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+......+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~- 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ- 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-
Confidence 3444555566667777777777666542 2234566677777777777777777777665 2334 455666666666
Q ss_pred HhcCchHHHHHHHHHHHHhc
Q 038206 420 KKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~ 439 (614)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777888888888777777
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=70.78 Aligned_cols=143 Identities=10% Similarity=0.007 Sum_probs=93.3
Q ss_pred CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----------------chHHHH
Q 038206 81 ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----------------HTFPFA 141 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----------------~t~~~l 141 (614)
++++.|...|+.... | +...|..+-..+.+. |++++|+..|++..... |+. ..|..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHHHHH
Confidence 445555555554432 2 455677777788888 99999999999888876 443 566666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChh
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~ 218 (614)
..++...|++++|...++.+++.. +.+...+..+..+|...|++++|...|++.. ..+...|..+...+.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777776654 3355666666667777777777777776652 224556666666666666666
Q ss_pred HH-HHHHHHhh
Q 038206 219 SA-LKLFRRMQ 228 (614)
Q Consensus 219 ~A-~~~~~~m~ 228 (614)
+| ..+|..|.
T Consensus 282 ~a~~~~~~~~~ 292 (336)
T 1p5q_A 282 AREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66 33555553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00016 Score=60.84 Aligned_cols=102 Identities=9% Similarity=-0.101 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACC 419 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 419 (614)
.+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~- 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH- 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-
Confidence 3444555667777777777777777652 2235666777777788888888888877765 2233 445566666666
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
...|++++|...++++++..|. ++...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~-~~~~~ 123 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAA-QPAHE 123 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHT-CGGGH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CcchH
Confidence 7788888888888888888776 44443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00061 Score=57.24 Aligned_cols=107 Identities=8% Similarity=-0.080 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038206 342 TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPV----LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLL 415 (614)
Q Consensus 342 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 415 (614)
.+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 333444444445555555555554432 2233 344555555566666666666655544 2223 445555555
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
..+ ...|++++|...++++++..|. +...+..+..+
T Consensus 107 ~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (148)
T 2dba_A 107 QAL-EKLGRLDQAVLDLQRCVSLEPK-NKVFQEALRNI 142 (148)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHH-HHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 555 6667777777777777777666 55544444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00021 Score=60.74 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=74.9
Q ss_pred CCccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038206 336 FSPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWR 412 (614)
Q Consensus 336 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 412 (614)
+.|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34433 44555666677788888888888877652 2336667777888888888888888888776 3334 456667
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIESEGGICSG 445 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 445 (614)
.+..++ ...|++++|...|+++++..|. ++.
T Consensus 94 ~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~ 124 (148)
T 2vgx_A 94 HAAECL-LQXGELAEAESGLFLAQELIAN-XPE 124 (148)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHTT-CGG
T ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 777777 8888888888888888888876 443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0003 Score=60.83 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 038206 303 DLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGC 381 (614)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 381 (614)
+...|..+...+.+.|++++|++.|++. .. ..| +...+..+..++...|++++|...|+...+. -+.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQA-LS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH-HH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 4456666677777777777777777766 33 223 3455666666677777777777777777652 1224666777
Q ss_pred HHHHHHHcCCHHHHHHHHHhC
Q 038206 382 LVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m 402 (614)
+..+|.+.|++++|.+.|++.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=5.3e-05 Score=68.11 Aligned_cols=146 Identities=9% Similarity=-0.060 Sum_probs=72.2
Q ss_pred HHHHHHHhc-CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc------------
Q 038206 72 SRIIHFASF-ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK------------ 135 (614)
Q Consensus 72 ~~li~~~~~-g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~------------ 135 (614)
+..+..... |+++.|.+.|+.-.. .....|..+-..+... |++++|+..|++........|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 333444444 777777777764433 2345577777788888 99999999999998865221211
Q ss_pred --chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 038206 136 --HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDA 210 (614)
Q Consensus 136 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~ 210 (614)
..+..+..++...|++++|...++..++.. +.+...+..+..+|...|++++|...|++.. ..+...+..+...
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 344444444555555555555555555543 2234444445555555555555555554431 1133344444444
Q ss_pred HHhcCChhH
Q 038206 211 FVQFGEFDS 219 (614)
Q Consensus 211 ~~~~g~~~~ 219 (614)
+...++.++
T Consensus 166 ~~~~~~~~~ 174 (198)
T 2fbn_A 166 VNKLKEARK 174 (198)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 444433333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00035 Score=71.25 Aligned_cols=165 Identities=7% Similarity=-0.070 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH---HHHHHHH-HHhccCCHHHHHHHHHHHHHh---cCCCC-Chh
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI---TFVGVLS-ACNHRGMVSEGRDYFDVMINE---YNITP-VLE 377 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~---t~~~ll~-a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 377 (614)
++..+...|...|++++|.+.+.......+..++.. .....+. .+...|+.+.+..++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356677788888888888888877622222222221 1222232 344568888888887766431 12222 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC---CCC---
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEG---GIC--- 443 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--- 443 (614)
++..|...|...|++++|..++++. ..+|. ..++..+...| ...|++++|..++++.....+ .|.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVY-HKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 7778899999999999999888765 11232 44667777777 888999999999988876532 211
Q ss_pred chhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 444 SGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...+..++..+...|++++|...+.+..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2445677778888999999988876654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=59.70 Aligned_cols=93 Identities=4% Similarity=-0.026 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc-------hhHH
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS-------GVYV 448 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~ 448 (614)
.+..+...+.+.|++++|++.|++. .+.| +...|..+-.++ ...|++++|++.++++++..|. +. .+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~-~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY-FEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-HHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHH
Confidence 3445566666677777777766654 3334 455566666666 6777777777777777776654 22 2455
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHh
Q 038206 449 LLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 449 ~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+..+|...|++++|.+.|++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777766543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00031 Score=55.67 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC-CCchhHHHHHHHH
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG-ICSGVYVLLSRVY 454 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 454 (614)
.+..+...+.+.|++++|...|++. ... .+...|..+...+ ...|++++|...++++.+..|. .+...+..+..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKAL-YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3444455555555555555555543 111 2344555555555 5556666666666666655443 1234555566666
Q ss_pred hhc-CChhhHHHHHHHHHhC
Q 038206 455 ASA-RRWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~-g~~~~a~~~~~~m~~~ 473 (614)
.+. |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 666 6666666666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00033 Score=55.50 Aligned_cols=98 Identities=13% Similarity=0.030 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 038206 341 ITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP---DAVIWRSLLD 416 (614)
Q Consensus 341 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 416 (614)
..+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445556667777777777777777652 2235566777777788888888888877765 3333 4667777777
Q ss_pred HHHHhc-CchHHHHHHHHHHHHhcCC
Q 038206 417 ACCKKH-ASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 417 ~~~~~~-~~~~~a~~~~~~~~~~~~~ 441 (614)
.+ ... |++++|.+.++++.+..|.
T Consensus 85 ~~-~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 AL-RYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HH-TTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HH-HHHhCCHHHHHHHHHHHhhcccC
Confidence 77 788 8888888888888877766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=74.83 Aligned_cols=116 Identities=6% Similarity=-0.079 Sum_probs=80.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
.+.+.|++++|.+.++...+. -+.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++ ...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~-~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN-MALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHH
Confidence 345677778888877777652 2234677777888888888888888877766 3344 466777777777 7788888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHH--HhhcCChhhHHHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLLSRV--YASARRWNDVGLVRK 468 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 468 (614)
+|++.++++++..|. +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888877 66667666666 777788888888776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00084 Score=68.36 Aligned_cols=190 Identities=11% Similarity=-0.015 Sum_probs=99.3
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCcc---------------hHHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCch
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDKH---------------TFPFALKACAYLFAFSQGKQAHAHIFKRG-LVSDV 170 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~---------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 170 (614)
.+.+. |++++|++.|.+..+......+.. .+..+...|...|++++|.+.+..+.+.- -.++.
T Consensus 13 ~l~~~-~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNE-KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHC-CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45556 888888888888877653211111 24556666777777777777666655421 11111
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChh
Q 038206 171 ----YINNSLIHFYASCGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGY 236 (614)
Q Consensus 171 ----~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~ 236 (614)
.+.+.+-..+...|+.+.|..+++.... .+ ..++..+...|...|++++|..++++.... ...+.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~- 170 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD- 170 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc-
Confidence 1222233333445666666666654411 11 234556666666777777777766665543 11110
Q ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-------CCC---HHH
Q 038206 237 TFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-------KRD---LTS 306 (614)
Q Consensus 237 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~~---~~~ 306 (614)
-+....++..++..|...|++++|...+++.. .+. ...
T Consensus 171 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 171 --------------------------------KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp --------------------------------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred --------------------------------chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 01112345555555666666666555554432 110 133
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 307 WNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+..+...+...|++++|...|.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555666666666655544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00032 Score=57.37 Aligned_cols=94 Identities=11% Similarity=0.070 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC-------chhH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMK-PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC-------SGVY 447 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~ 447 (614)
..+..+...+...|++++|...|++. ... .+...|..+...+ ...|+++.|...++++.+..|. + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVY-FEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHhccHHHHHHHHHHHHhhccc-cchhHHHHHHHH
Confidence 45566677777778888887777765 222 3566677777777 7788888888888888887665 3 5677
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 448 VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 448 ~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+|...|++++|.+.+++..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7888888888999999988888765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00056 Score=70.40 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+-.++ ...|++++|+..|+++++..|. +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~-~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ-LLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 457788888999999999999988876 3334 677888888888 9999999999999999999999 88999999999
Q ss_pred HhhcCChhhHHH-HHHHHHhC
Q 038206 454 YASARRWNDVGL-VRKLMTDK 473 (614)
Q Consensus 454 ~~~~g~~~~a~~-~~~~m~~~ 473 (614)
+.+.|+++++.+ .++.|..+
T Consensus 395 ~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999988764 45555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=57.79 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC---chhHHHHHHHH
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKPDA----VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC---SGVYVLLSRVY 454 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 454 (614)
...+.+.|++++|.+.|++. ...|+. ..+..+...+ ...|+++.|...++++.+..|. + +..+..+..+|
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESY-YATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 33444555555555555443 111211 2344444444 5555555555555555555555 3 34455555555
Q ss_pred hhcCChhhHHHHHHHHHh
Q 038206 455 ASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~ 472 (614)
.+.|++++|...+++..+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555666666655555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0006 Score=70.52 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=72.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccC
Q 038206 279 LIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRG 354 (614)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g 354 (614)
+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.+++. .. +.|+ ...+..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~--l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA-IE--LDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--SCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcC
Confidence 3345566778888877777654 235677777777777788888888877776 33 2333 356666667777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038206 355 MVSEGRDYFDVMINEYNITPVLEHYGCLVDL--LARAGNIDEALHLVS 400 (614)
Q Consensus 355 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 400 (614)
++++|.+.|+...+...- +...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788887777777653222 23334444444 666777777777776
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.025 Score=54.90 Aligned_cols=171 Identities=10% Similarity=0.021 Sum_probs=89.1
Q ss_pred hcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhC-chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc-C-CH
Q 038206 213 QFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLA-TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC-G-SL 289 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~ 289 (614)
+.+..++|+++++++...-+-+...|+.--.+....+ .++++......+.+. .+-+..+|+.-...+.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344456666666665432223333444444444444 355555555555543 333445565555555554 5 66
Q ss_pred HHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCC---
Q 038206 290 DIARQVFESMPK---RDLTSWNSIILGFALHGRAE--------AALKYFDRLVVEESFSPNSITFVGVLSACNHRGM--- 355 (614)
Q Consensus 290 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~--- 355 (614)
+++.++++.+.+ +|..+|+.-.-.+.+.|..+ ++++.++++ .+.. .-|...|+..-..+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~-I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM-LRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH-HHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH-HHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 777777777663 35666665544444444444 677777766 3322 2234455544444555443
Q ss_pred ----HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC
Q 038206 356 ----VSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN 391 (614)
Q Consensus 356 ----~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (614)
++++.+.+...+.. -+-|...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666655542 22345555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00034 Score=57.21 Aligned_cols=94 Identities=6% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PM----KPD----AVIWRSL 414 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~l 414 (614)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 33334444445555555555544431 1223444445555555555555555555443 11 111 4455555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 415 LDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 415 l~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
...+ ...|+++.|.+.++++.+..+
T Consensus 86 a~~~-~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 86 GNSY-FKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHH-HHhccHHHHHHHHHHHHHhCC
Confidence 5555 666666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00088 Score=56.99 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCC-----Cc
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM----PMKPD----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGI-----CS 444 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 444 (614)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+ ...|++++|...+++..+..... ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 3444555555555555555555443 00011 33455555555 67777777777777776553211 13
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..+..+...|...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566778888888888888888877643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00045 Score=58.58 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-------c
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKPD-------------AVIWRSLLDACCKKHASVVLSEEVAKQVIES-------E 439 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------~ 439 (614)
.....+.+.|++++|++.|++. .+.|+ ...|..+-.++ ...|++++|+..+++.++. +
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al-~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL-AGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3344445555555555555543 11222 23787777777 8888888888888888888 8
Q ss_pred CCCCchhH----HHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 440 GGICSGVY----VLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 440 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
|+ +...| .....++...|++++|...|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88 77888 8888899999999999999988754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0012 Score=54.56 Aligned_cols=93 Identities=9% Similarity=0.003 Sum_probs=49.7
Q ss_pred chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 038206 136 HTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFV 212 (614)
Q Consensus 136 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 212 (614)
..+..+...+...|+++.|...+...++.. +.+...+..+..+|...|++++|...|+... ..+...|..+...|.
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344444445555555555555555555443 2234455555555555555555555555442 123445666666666
Q ss_pred hcCChhHHHHHHHHhhh
Q 038206 213 QFGEFDSALKLFRRMQI 229 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~ 229 (614)
..|++++|+..|++...
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=52.99 Aligned_cols=93 Identities=13% Similarity=0.002 Sum_probs=54.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHh
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPV-LEHYGCLVDLLARAGNIDEALHLVSNM-PMKPD----AVIWRSLLDACCKK 421 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~ 421 (614)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|...|++. ...|+ ...+..+...+ ..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~-~~ 88 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ-YG 88 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-HH
Confidence 3455566666666666666543211110 135555666666777777777766655 22232 34455555566 67
Q ss_pred cCchHHHHHHHHHHHHhcCC
Q 038206 422 HASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~ 441 (614)
.|+++.|...++++.+..|+
T Consensus 89 ~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp TTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHHCCC
Confidence 77777777777777777766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00085 Score=57.08 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=47.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHH
Q 038206 343 FVGVLSACNHRGMVSEGRDYFDVMINEYNITP----VLEHYGCLVDLLARAGNIDEALHLVSNM-------PMKP-DAVI 410 (614)
Q Consensus 343 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~ 410 (614)
+..+...+...|++++|...++...+...-.+ ....+..+...+...|++++|.+.+++. +..+ ...+
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 33444444555555555555554432110001 1234455555566666666666555543 1011 1234
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
+..+...+ ...|++++|.+.+++..+..
T Consensus 132 ~~~la~~~-~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 132 CWSLGNAY-TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHH-HHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCHHHHHHHHHHHHHHH
Confidence 44555555 66677777777777766553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=59.13 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHhcCC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHH
Q 038206 353 RGMVSEGRDYFDVMINEYNI-TP-VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLS 428 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a 428 (614)
.|++++|...|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++ ...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL-YNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHcCCHHHH
Confidence 34555555555555431 10 12 2344445555555555555555555544 1222 233444444444 555555555
Q ss_pred HHHHHHHHHhcCC
Q 038206 429 EEVAKQVIESEGG 441 (614)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (614)
...+++.++..|.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 5555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0011 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 203 SWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 203 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+|..+...+...|++++|++.|++...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555666666677777766666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.027 Score=54.29 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcC--CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC-HHHHHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCG--SLDIARQVFESMP---KRDLTSWNSIILGFALHGR-AEAALK 325 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~ 325 (614)
+.+..+...+... .+-+..+|+.-...+.+.| .++++..+++.+. .+|..+|+.-.-.+...|. .+++++
T Consensus 91 ~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 91 KAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3344444444442 2334455555555555555 3667777776665 3466677666666666666 467777
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--
Q 038206 326 YFDRLVVEESFSPNSITFVGVLSACNHR--------------GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA-- 389 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-- 389 (614)
.+.++ .... .-|...|+.....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 167 ~~~~~-I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 167 FTDSL-ITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHH-HHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHH-HHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 77776 3322 12333333332222221 3355566666555432 222444554444444433
Q ss_pred ---------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----HhcCchHHHHHHHHHHHHhcCC
Q 038206 390 ---------GNIDEALHLVSNM-PMKPDAVIWRSLLDACC----KKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 390 ---------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~----~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+.++++++.++++ ...||. .|..+-.+.+ ...+..++....+.++.+.+|.
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 2345555555554 333443 2322111110 1234445555566666666555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00077 Score=58.03 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
..|..+..++ ...|+++.|+..++++++.+|. +...|..+..+|...|++++|...+++..+
T Consensus 64 ~~~~nla~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCY-LNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4555555565 7777888888888888888777 777777788888888888888887777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.001 Score=54.07 Aligned_cols=92 Identities=9% Similarity=-0.110 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 038206 101 WNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFY 180 (614)
Q Consensus 101 ~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 180 (614)
+..+...+.+. |++++|+..|++..+.. + .+...+..+..++...|++++|...++..++.. +.+...+..+..+|
T Consensus 20 ~~~~g~~~~~~-g~~~~A~~~~~~al~~~-P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKL-ANLAEAALAFEAVCQKE-P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHS-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33344455555 66666666666666654 1 234455555556666666666666666666654 22344555566666
Q ss_pred HhcCCHHHHHHHHhhc
Q 038206 181 ASCGHLDLANKVFDNM 196 (614)
Q Consensus 181 ~~~g~~~~A~~~f~~m 196 (614)
.+.|++++|...|++.
T Consensus 96 ~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 96 TNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6666666666666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=64.77 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHHHHH
Q 038206 304 LTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHYGCL 382 (614)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 382 (614)
...|..+...+.+.|++++|++.|++. ... .|+.. .....++.. ...| +...|..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kA-l~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nl 279 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKV-LRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH-HHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHH
Confidence 345667777777888888888888776 221 01000 000111110 1122 35678888
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCCh
Q 038206 383 VDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRW 460 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (614)
..+|.+.|++++|++.+++. ...| +...|..+-.++ ...|++++|+..++++++..|. +...+..+..++.+.++.
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW-QGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 88999999999999998876 5555 567788888888 8899999999999999999998 888888888888888887
Q ss_pred hhHHHH
Q 038206 461 NDVGLV 466 (614)
Q Consensus 461 ~~a~~~ 466 (614)
+++.+.
T Consensus 358 ~~a~k~ 363 (370)
T 1ihg_A 358 KDKEKA 363 (370)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0038 Score=64.22 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=91.7
Q ss_pred HHhccCCHHHHHHHHHHHHHhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYN--ITP----VLEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVIWR 412 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 412 (614)
.+...|++++|..+++...+... +.| ...+++.|...|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888777654321 122 2467888888899999999988887764 23354 34678
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHH-----hcCCCCchh---HHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 413 SLLDACCKKHASVVLSEEVAKQVIE-----SEGGICSGV---YVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 413 ~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
.|-..| ...|++++|+.+++++++ .|++ .+.+ ...|..++...|++++|..++.+++++-
T Consensus 398 nLa~~~-~~~G~~~eA~~~~~~Al~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTN-WHAGHIEVGHGMICKAYAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 889999999999998876 3666 4433 3567778889999999999999998753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0013 Score=56.62 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++ ...|+++.|...++++++..|. +.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~l~p~-~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR-IAAWKLDEAEEDLKLLLRNHPA-AA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCGG-GH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHhcHHHHHHHHHHHHhcCCC-CH
Confidence 456777888888888888888888776 3344 567778888888 8889999999999999998887 55
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0024 Score=65.57 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=90.3
Q ss_pred CChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc----------------chHHHH
Q 038206 81 ADLDYAFRVFYQIEN---PNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK----------------HTFPFA 141 (614)
Q Consensus 81 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~----------------~t~~~l 141 (614)
++++.|...|+.... .....|..+-..+.+. |++++|+..|++..+.. |+. ..|..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWL---EMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH---TTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh---cccccCChHHHHHHHHHHHHHHHHH
Confidence 444555555544332 2345677777888888 99999999999998865 443 456666
Q ss_pred HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhcCChh
Q 038206 142 LKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-SLVSWNVMIDAFVQFGEFD 218 (614)
Q Consensus 142 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~ 218 (614)
..++.+.|++++|...++.+++.. +.+...+..+..+|.+.|++++|...|++..+ | +...|..+...+.+.++.+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777776654 33455666666677777777777777766532 2 3456666666666666666
Q ss_pred HHHH-HHHHhh
Q 038206 219 SALK-LFRRMQ 228 (614)
Q Consensus 219 ~A~~-~~~~m~ 228 (614)
++.+ ++..|.
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 5553 445554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00028 Score=56.10 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCC------chh
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGIC------SGV 446 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~ 446 (614)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|+..++++++..|. + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMAL-IKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 3456667777788888888888888775 2334 566777777777 8888999999999998888877 5 555
Q ss_pred HHHHHHHHhhcCChhhHHHHHH
Q 038206 447 YVLLSRVYASARRWNDVGLVRK 468 (614)
Q Consensus 447 ~~~l~~~~~~~g~~~~a~~~~~ 468 (614)
+..+..++...|+.++|...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6667777777777776655543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=64.41 Aligned_cols=145 Identities=7% Similarity=-0.054 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
..|..+...+.+.|++++|+..|++. .. ..|+... +...++.+++...+ . ...|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~A-l~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMA-IA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHH-HH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH-HH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 34555666667777888888877765 32 2344331 11222222222111 0 124555566
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hhcCChh
Q 038206 385 LLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY-ASARRWN 461 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 461 (614)
+|.+.|++++|+..+++. ...| +...|..+-.++ ...|++++|...|+++++..|. +...+..|..+. ...+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~-~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAK-AELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666554 2223 455555555565 6666666666666666666665 555555555442 3344555
Q ss_pred hHHHHHHHHHh
Q 038206 462 DVGLVRKLMTD 472 (614)
Q Consensus 462 ~a~~~~~~m~~ 472 (614)
.+...+++|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55566655543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00073 Score=54.51 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+...+..+...|.+.|++++|...|++.. ..+...|..+..+|.+.|++++|+..|++.
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566666677777777777777776654 224566666667777777777777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0024 Score=62.64 Aligned_cols=93 Identities=10% Similarity=-0.037 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcc------------------hHHHHHHHHHccCCcHHHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKH------------------TFPFALKACAYLFAFSQGKQAHAH 160 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~ 160 (614)
..|..+-..+.+. |++++|+..|++..... |+.. .|..+..++...|++++|...++.
T Consensus 180 ~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 180 DRRKMDGNSLFKE-EKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHTCSS-SCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666677777 88888888888887765 5443 444455555555555555555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 161 IFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 161 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
.++.. +.+...+..+..+|...|++++|...|++.
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55543 223445555555555555555555555555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.18 Score=48.60 Aligned_cols=126 Identities=9% Similarity=0.003 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHcCCCCCCcch-HHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHT-FPFALKACAYLFA----------FSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
++|+.++..+...+ |+..| |+.=-..+...+. ++++..+++.++... +-+..+|+.--.++.+.|
T Consensus 47 ~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 46777777777665 54433 3322222211111 456666777666654 335566666666666666
Q ss_pred --CHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCC-hhHHHHHHHHhhhccCCChhhHHHHHHHH
Q 038206 185 --HLDLANKVFDNML---ERSLVSWNVMIDAFVQFGE-FDSALKLFRRMQILFEPDGYTFQSITSAC 245 (614)
Q Consensus 185 --~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~pd~~t~~~ll~a~ 245 (614)
++++++.+++.+. .+|..+|+--...+.+.|. ++++++.+.++...-+-|...|+......
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 189 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3677777777763 3355666666666666666 47777777777655444555555444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.003 Score=49.13 Aligned_cols=64 Identities=17% Similarity=0.213 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...|..+...+ ...|++++|+..|+++++.+|. +...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEH-LKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777 8889999999999999999988 888889999999999999999999887654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.004 Score=46.96 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRV 453 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (614)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+ ...|++++|...++++.+..|. +...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 445666777777778888887777765 2223 556677777777 7888888888888888888887 77777777776
Q ss_pred HhhcC
Q 038206 454 YASAR 458 (614)
Q Consensus 454 ~~~~g 458 (614)
+.+.|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 65543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=51.44 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...|..+...+ ...|+++.|+..++++++..|. +...|..+..+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTY-AEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666 7777777777777777777776 666777777777777777777777776554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.036 Score=58.32 Aligned_cols=168 Identities=8% Similarity=0.020 Sum_probs=127.5
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhcc
Q 038206 288 SLDIARQVFESMP---KRDLTSWNSIILGFALHGR----------AEAALKYFDRLVVEESFSP-NSITFVGVLSACNHR 353 (614)
Q Consensus 288 ~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~ 353 (614)
.-++|.+.++.+. ..+..+|+.--..+...|+ ++++++.++++ .. ..| +...|..--.++.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~-l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC-LR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHc
Confidence 3456788887765 2356678776666666666 88999999988 43 233 345666666666777
Q ss_pred C--CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc------
Q 038206 354 G--MVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG-NIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH------ 422 (614)
Q Consensus 354 g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~------ 422 (614)
+ +++++.+.++.+.+. -+-+-..|+.-...+.+.| ..+++++.++++ ...| |...|+.....+ ...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll-~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL-PQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH-HHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHH-Hhhcccccc
Confidence 8 779999999999863 2336777777777788888 899999998887 4445 788888877776 442
Q ss_pred --------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhh
Q 038206 423 --------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWND 462 (614)
Q Consensus 423 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (614)
+.++++.+.+.++++..|. |...|..+...+.+.++.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5679999999999999999 99999999999999888555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0072 Score=62.17 Aligned_cols=127 Identities=11% Similarity=0.000 Sum_probs=89.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhh--cCC---CccH-HHHHHHHHHHhccCCHHHHHHHHHHHHHh----cCC-CC-ChhHHH
Q 038206 313 GFALHGRAEAALKYFDRLVVE--ESF---SPNS-ITFVGVLSACNHRGMVSEGRDYFDVMINE----YNI-TP-VLEHYG 380 (614)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~--~g~---~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~~-~p-~~~~~~ 380 (614)
.+...|++++|+.++++.... .-+ .|+. .+++.|..+|...|++++|..+++....- +|- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888765221 112 2333 67788888899999999998888876542 121 23 246788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc
Q 038206 381 CLVDLLARAGNIDEALHLVSNM---------PMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESE 439 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 439 (614)
.|...|...|++++|+.++++. +-.|++.....++..+....+.++.|+..+.++.+.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765 2345555544555555367888999999999987743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0061 Score=60.54 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCC
Q 038206 173 NNSLIHFYASCGHLDLANKVFDNMLE-------------------RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEP 233 (614)
Q Consensus 173 ~~~li~~~~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 233 (614)
+..+...|.+.|++++|...|++..+ .+...|+.+..+|.+.|++++|+..+++..+.-+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 55556666677777777776665432 12345666666666777777777776666543222
Q ss_pred ChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHH
Q 038206 234 DGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIA 292 (614)
Q Consensus 234 d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 292 (614)
+...+..+..++...+++++|...++.+.+. .+.+..++..+...+.+.++.+++
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l----~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI----APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555543 112333444444444444444444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.006 Score=51.64 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCc
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-P-------MKPD-AVIW----RSLLDACCKKHASVVLSEEVAKQVIESEGGICS 444 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 444 (614)
.|+.+..++.+.|++++|+..+++. . +.|+ ...| ...-.++ ...|++++|+..|++.++..|. |.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL-~~lgr~eEAl~~y~kAlel~p~-d~ 136 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL-DGLGRGAEAMPEFKKVVEMIEE-RK 136 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH-CC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHH-HHCCCHHHHHHHHHHHHhcCCC-cH
Confidence 6666667777777777776666554 3 3775 4577 7888888 9999999999999999999887 55
Q ss_pred hh
Q 038206 445 GV 446 (614)
Q Consensus 445 ~~ 446 (614)
..
T Consensus 137 ~~ 138 (159)
T 2hr2_A 137 GE 138 (159)
T ss_dssp SC
T ss_pred HH
Confidence 43
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0099 Score=47.34 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhh
Q 038206 170 VYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQ 228 (614)
Q Consensus 170 ~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 228 (614)
...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555544431 1233445555555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=54.27 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=63.5
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 387 ARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS----------VVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
.+.+.+++|.+.++.. ...| +...|..+-.++ ...++ +++|+..|+++++.+|+ +..+|..+.++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l-~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVL-LELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3445566666666654 2334 455565555555 54444 56999999999999999 999999999999
Q ss_pred hhcC-----------ChhhHHHHHHHHHhC
Q 038206 455 ASAR-----------RWNDVGLVRKLMTDK 473 (614)
Q Consensus 455 ~~~g-----------~~~~a~~~~~~m~~~ 473 (614)
...| ++++|.+.|++..+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9875 899999999988763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0098 Score=46.71 Aligned_cols=65 Identities=6% Similarity=-0.135 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+...|..+...+ ...|++++|...++++++..|. +...+..+..+|.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSL-FKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 456777888888 8999999999999999999999 8999999999999999999999999988764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.17 Score=55.92 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=103.4
Q ss_pred HcCCCCchHHHH-HHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 038206 109 ARSVDAKPQAIV-LFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLD 187 (614)
Q Consensus 109 ~~~~~~~~~A~~-~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 187 (614)
... +++++|.+ ++.. . |+......++..+.+.|..+.|.++.+ +. ..-......+|+++
T Consensus 610 ~~~-~~~~~a~~~~l~~------i-~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 610 TLR-GEIEEAIENVLPN------V-EGKDSLTKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLT 669 (814)
T ss_dssp HHT-TCHHHHHHHTGGG------C-CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHH
T ss_pred HHh-CCHHHHHHHHHhc------C-CchHHHHHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHH
Confidence 345 77777766 4311 1 212234666677777777777776542 11 11234556789999
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccC
Q 038206 188 LANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDH 267 (614)
Q Consensus 188 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 267 (614)
.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++-......
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~--- 736 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETT--- 736 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 9999987764 567899999999999999999999998863 334444444455555544444444433
Q ss_pred CCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038206 268 SLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDR 329 (614)
Q Consensus 268 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (614)
| -++.-..+|.++|++++|.+++. +.+++++|..+-+.
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 2 23445556666777777766554 45666666666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.019 Score=44.46 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=38.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 169 DVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 169 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
+..++..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666777777666666522 2445666677777777777777777766553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.28 Score=51.54 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHHHcCCCCCCcc-hHHHHHHHHHccCC----------cHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 038206 113 DAKPQAIVLFQRMIEQGNVLPDKH-TFPFALKACAYLFA----------FSQGKQAHAHIFKRGLVSDVYINNSLIHFYA 181 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 181 (614)
...++|++.++++.... |+.. .|+.--.++...++ ++++...++.+++.. +-+..+|+.--.++.
T Consensus 43 ~~~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44556777777777766 4433 34444444444444 677777777777765 335566666666666
Q ss_pred hcC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHhcC-ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh-------
Q 038206 182 SCG--HLDLANKVFDNML---ERSLVSWNVMIDAFVQFG-EFDSALKLFRRMQILFEPDGYTFQSITSACAGL------- 248 (614)
Q Consensus 182 ~~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~------- 248 (614)
+.| +++++++.++.+. .+|..+|+--...+.+.| .++++++.+.++.+.-+-|...|.....++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 777 5677777777763 345667777666666667 677777777777655444555555554444432
Q ss_pred -------CchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC
Q 038206 249 -------ATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS 288 (614)
Q Consensus 249 -------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 288 (614)
+.++++.+.+..++.. .+.|...|+-+-..+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCC
Confidence 3344555555555543 23345566665555555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.025 Score=46.90 Aligned_cols=110 Identities=10% Similarity=-0.062 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDE 394 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 394 (614)
+.++|++.|++. .+.| .|+.. +-..|...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 10 d~~~A~~~~~~a-a~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKA-CELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHH-HHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHH-HcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 455666666665 4444 22222 334445555566666666665442 234444455555554 455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhc
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSEEVAKQVIESE 439 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~~~~~~~~~~~ 439 (614)
|.++|++.-..-+...+..|-..| .. .++.++|.+.+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y-~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQ-YAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-HCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555555441122344444444444 33 345555555555554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.043 Score=45.49 Aligned_cols=113 Identities=9% Similarity=-0.059 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----cCchHHHH
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK----HASVVLSE 429 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~----~~~~~~a~ 429 (614)
++.++|..+|+...+ .| .|... |..+|...+.+++|.+.|++.-..-+...+..|-..| .. .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y-~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFY-ENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH-HcCCCCCccHHHHH
Confidence 467899999999876 35 33333 7778888888999999999873345778888887777 66 78999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCc
Q 038206 430 EVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 476 (614)
+.|++..+.+ ++..+..|..+|.. .++.++|.+.+++..+.|..
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999875 56888899999998 89999999999998887753
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.031 Score=42.59 Aligned_cols=68 Identities=10% Similarity=-0.066 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCC
Q 038206 406 PDAVIWRSLLDACCKKHAS---VVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 475 (614)
+|...+..+-.++ ...++ .++|..+++++++.+|+ ++.....+...+.+.|++++|...|+++.+.+-
T Consensus 4 ~~~~~~~~~a~al-~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTL-YYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHH-HHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4666777777777 43333 69999999999999999 999999999999999999999999999987543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.037 Score=41.35 Aligned_cols=79 Identities=11% Similarity=0.060 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIH 178 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 178 (614)
..|..+-..+... |++++|+..|++..+.. + .+...+..+...+...|++++|...++...+.. +.+..++..+..
T Consensus 10 ~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQ-GDYDEAIEYYQKALELD-P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455555555666 66666666666666554 1 233445555555666666666666666665543 223344444444
Q ss_pred HHH
Q 038206 179 FYA 181 (614)
Q Consensus 179 ~~~ 181 (614)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.011 Score=49.90 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh
Q 038206 354 GMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGN----------IDEALHLVSNM-PMKP-DAVIWRSLLDACCKK 421 (614)
Q Consensus 354 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 421 (614)
+.+++|...++...+. -+.+...|..+..++...|+ +++|+..|++. .+.| +...|..+-.+| ..
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay-~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY-TS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HH
Confidence 3455566666555442 12245555555555555544 34777777665 4455 456777777777 55
Q ss_pred c-----------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 422 H-----------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 422 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
. |++++|++.|+++++.+|+ +. .|...+. ..++|-+++-.+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~-~~-~y~~al~------~~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NT-HYLKSLE------MTAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CH-HHHHHHH------HHHTHHHHHHHHHHS
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCC-CH-HHHHHHH------HHHhCHhccCccccc
Confidence 4 5899999999999999988 43 3332222 234455555544444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.038 Score=55.78 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=79.9
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----cCCCCc---
Q 038206 383 VDLLARAGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIES-----EGGICS--- 444 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~--- 444 (614)
+.-+.+.|++++|++++++. +..|+ ..+++.|...| ...|++++|+.+++++++. |+. ++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y-~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a 371 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC-INLGLLEEALFYGTRTMEPYRIFFPGS-HPVRG 371 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHH
Confidence 34455677888888777654 11122 34677788888 8888888888888888753 444 33
Q ss_pred hhHHHHHHHHhhcCChhhHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHh
Q 038206 445 GVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDTSHPQTKQIYGFLDLIDEKLK 518 (614)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 518 (614)
.+++.|...|...|++++|..++++..+--.. ..| ..||...++...+.....+|+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 45678888999999999999998876542110 001 148888888888877777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.44 Score=38.31 Aligned_cols=140 Identities=10% Similarity=0.067 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.-.|..++..++..+. .. ..+..-|+.++--....-+-+-..++++.+-+-+.+ ..||++..
T Consensus 18 ildG~v~qGveii~k~-~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEI-TK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHH-HH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHH-cC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 3457777777777665 22 123344555555445555555555555555322221 23555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...-+-.++ .+..-...-+... ...|.-+.-.+++..++... .|++.....+.++|.+.|...+|.+++++.=++|
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~l-v~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDIL-VIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHH-HHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHH-HHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 555555544 2444455566777 88889999999998865533 3368888999999999999999999999999999
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 85
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.29 Score=53.92 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=66.6
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHH
Q 038206 281 DMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 360 (614)
..+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++ .. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHH
Confidence 34566788888888877664 5578888888888888888888888877 32 333444444466666555
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 038206 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMP 403 (614)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (614)
.+-+..... | -++.-..+|.+.|++++|.+++.++.
T Consensus 728 ~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 728 TLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 544444331 2 12334445666777777777666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.095 Score=52.86 Aligned_cols=83 Identities=6% Similarity=-0.040 Sum_probs=56.4
Q ss_pred ccCCcHHHHHHHHHHHHh---CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhhcC----------CCC-hhHHHHHH
Q 038206 147 YLFAFSQGKQAHAHIFKR---GLVSD----VYINNSLIHFYASCGHLDLANKVFDNML----------ERS-LVSWNVMI 208 (614)
Q Consensus 147 ~~~~~~~a~~~~~~~~~~---g~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~m~----------~~~-~~~~~~li 208 (614)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.. .|+ ..++|.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887776652 12222 3467778888888888888887777651 122 24677888
Q ss_pred HHHHhcCChhHHHHHHHHhhh
Q 038206 209 DAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~ 229 (614)
..|...|++++|+.+|++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.18 Score=50.87 Aligned_cols=98 Identities=11% Similarity=0.080 Sum_probs=63.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHH
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEY--NITPV----LEHYGCLVDLLARAGNIDEALHLVSNM---------PMKPD-AVI 410 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 410 (614)
+..+.+.|++++|..+++...+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777665421 12222 456777777888888888887777654 23344 346
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHH-----hcCCCCchh
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIE-----SEGGICSGV 446 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 446 (614)
++.|-..| ...|++++|+.+++++++ .|++ ++.+
T Consensus 374 l~nLa~~~-~~~g~~~eA~~~~~~Al~i~~~~lG~~-Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQ-LHQGMFPQAMKNLRLAFDIMRVTHGRE-HSLI 412 (429)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCTT-SHHH
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCC-ChHH
Confidence 77777777 888888888888888775 3666 4443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.033 Score=56.18 Aligned_cols=82 Identities=10% Similarity=0.013 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----cCCCCc---hhHHHH
Q 038206 389 AGNIDEALHLVSNM---------PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIES-----EGGICS---GVYVLL 450 (614)
Q Consensus 389 ~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~---~~~~~l 450 (614)
.|++++|+.++++. +..|+ ..+++.|...| ...|++++|+.+++++++. |++ ++ .+|+.|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~nL 388 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC-LYMQDWEGALKYGQKIIKPYSKHYPVY-SLNVASMWLKL 388 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 35666666665543 12233 34677777777 7788888888888877753 444 33 456788
Q ss_pred HHHHhhcCChhhHHHHHHHHHh
Q 038206 451 SRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 451 ~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|...|++++|..++++..+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHH
Confidence 8889999999999988887654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.76 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHH--hcC---CHHHHHHHHHHHhhhcCCCccH
Q 038206 303 DLTSWNSIILGFA--LHG---RAEAALKYFDRLVVEESFSPNS 340 (614)
Q Consensus 303 ~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~~g~~p~~ 340 (614)
|...|...+.+.. ..+ ...+|..+|++. .+ ..|+.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~A-l~--lDP~~ 232 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEI-VQ--SSPEF 232 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHH-HH--HCTTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH--hCCCC
Confidence 5556666665533 222 346778888776 33 45653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.16 Score=38.67 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAV-IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
....+.+.|++++|.+.|++. ...| +.. .|..+-..+ ...|++++|.+.|+++++..|. +...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAY-RKLGDWQKALNNYQSAIELNPD-SPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-STHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC-cHHHH
Confidence 345567778888888888776 3334 445 666666666 7888888888888888888887 66554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.067 Score=40.83 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=50.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCCCCch-hHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGGICSG-VYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
..+ ...|+++.|...++++++..|. +.. .+..+..+|...|++++|.+.+++..+.
T Consensus 8 ~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KEL-INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHH-HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHH-HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345 6789999999999999999998 888 9999999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.89 Score=38.86 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=91.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEG 359 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a 359 (614)
.+....+|+++.|.++-+.+ .+...|..|-......|+++-|.+.|.+. .. |..+.-.|.-.|+.+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ-HS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-TC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh-CC---------HHHHHHHHHHhCCHHHH
Confidence 44567789999999998776 46789999999999999999999999876 32 34444456667777776
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 038206 360 RDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQV 435 (614)
Q Consensus 360 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 435 (614)
..+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... +...+|..+.|.++.+.+
T Consensus 80 ~kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-------HHHHcCcHHHHHHHHHHh
Confidence 6554444331 2 244555667778999999999988763332211 115567778888887654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.54 E-value=1.8 Score=42.00 Aligned_cols=148 Identities=11% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHc--C--CCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHH---ccC--CcHHHH
Q 038206 86 AFRVFYQIENPNSFTWNTLIRACAR--S--VDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACA---YLF--AFSQGK 155 (614)
Q Consensus 86 A~~~f~~m~~~~~~~~~~li~~~~~--~--~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~---~~~--~~~~a~ 155 (614)
+.+.....+ .+...|...+.+... . .....+|..+|++..+.. |+- ..|..+.-++. ..+ ......
T Consensus 183 ~~r~~~~~p-~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD---P~~a~A~A~la~a~~~~~~~~~~~~~~~~ 258 (372)
T 3ly7_A 183 QETLQKILP-HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS---PEFTYARAEKALVDIVRHSQHPLDEKQLA 258 (372)
T ss_dssp HHHHHHHSC-SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHhccCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence 334444433 477788888876542 2 133478999999999887 653 33443333322 111 111111
Q ss_pred H---HHHHHHH-hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 038206 156 Q---AHAHIFK-RGLVSDVYINNSLIHFYASCGHLDLANKVFDNML--ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQI 229 (614)
Q Consensus 156 ~---~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 229 (614)
. .+..... ..-+.+..++.++..++...|++++|...+++.. .++...|..+...+.-.|++++|.+.|++...
T Consensus 259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 1111111 1124566677777666666788888888887763 35555666666777778888888888876654
Q ss_pred ccCCChhhH
Q 038206 230 LFEPDGYTF 238 (614)
Q Consensus 230 ~~~pd~~t~ 238 (614)
. .|...||
T Consensus 339 L-~P~~~t~ 346 (372)
T 3ly7_A 339 L-RPGANTL 346 (372)
T ss_dssp H-SCSHHHH
T ss_pred c-CCCcChH
Confidence 3 5555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.52 Score=39.20 Aligned_cols=66 Identities=2% Similarity=-0.140 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhc-CCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 406 PDAVIWRSLLDACCKKHA---SVVLSEEVAKQVIESE-GGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 406 p~~~~~~~ll~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++..+.-.+--++ .+.+ ++++|..+++.+.+.+ |.-+...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~L-v~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCL-VRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4544444444445 5544 5567777777777766 411344555666677777777777777777655
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.28 E-value=3.5 Score=35.18 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=80.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHH
Q 038206 178 HFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWA 257 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~ 257 (614)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.+.-.|+.+.-..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 3455688899988888776 3567899999999999999999998888753 34444444555665554444
Q ss_pred HHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 258 HAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 258 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
-+..... | -++.-...+.-.|+++++.++|.+...-..... .....|..+.|.++.+++
T Consensus 83 a~iA~~~---g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR---E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT---T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC---c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 4433333 2 245555556667777777777766543221111 112255566666666554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.0023 Score=63.41 Aligned_cols=223 Identities=14% Similarity=0.179 Sum_probs=147.2
Q ss_pred ChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 038206 82 DLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHI 161 (614)
Q Consensus 82 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 161 (614)
+++.|.+.-++...| ..|+.+-.+.... +...+|++.|- +--|...|..++.++.+.|.+++-..++...
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~-~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~Ma 109 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQK-GMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMA 109 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTS-SSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTT
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHcc-CchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444444443333 4588888888888 88888876652 2146667888888888888888888887766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-----------
Q 038206 162 FKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL----------- 230 (614)
Q Consensus 162 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------- 230 (614)
.+. ..++.+=+.|+-+|++.+++.+-.+++ ..||+.-...+..-|...|.++.|.-+|..+..-
T Consensus 110 Rk~--~ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 110 RKK--ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp STT--CCSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred HHH--hcccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 654 334556678888899888876654443 3355555566666666666666666666554221
Q ss_pred ----------cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 038206 231 ----------FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP 300 (614)
Q Consensus 231 ----------~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~ 300 (614)
-.-+..||-.+-.+|...+.+..|...--.++-. ..-...|+..|-+.|.+++-..+++.-.
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--------adeL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--------ADELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC--------SSCCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc--------HHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 2346789999999999999888776543333321 2223356777888888888877777443
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038206 301 ---KRDLTSWNSIILGFALHGRAEAALKYFD 328 (614)
Q Consensus 301 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 328 (614)
......|+-|.-.|++- ++++..+.++
T Consensus 257 glErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CCCchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 45778888888888775 4555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.48 Score=44.12 Aligned_cols=68 Identities=3% Similarity=-0.037 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhc-CChhhHHHHHHHHHhCCCc
Q 038206 408 AVIWRSLLDACCKK-----HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASA-RRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 408 ~~~~~~ll~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~g~~ 476 (614)
-..|..|...| .+ .|+.++|++.|++.++++|.-+..++......++.. |+.+++.+.+++.......
T Consensus 199 GsA~~~LG~lY-~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFY-AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHH-HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHH-HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555555555 55 478888888888888888762477777777877774 7788888888877776555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.99 Score=42.02 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHH-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 376 LEHYGCLVDLLAR-----AGNIDEALHLVSNM-PMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 376 ~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++...-..+|...|+.+.+.+.+++.+...|.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3345555555655 36666666666655 33442 4445555555522346666666666666666655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.60 E-value=1.3 Score=34.06 Aligned_cols=66 Identities=8% Similarity=-0.047 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchh
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-----P----MKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGV 446 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 446 (614)
+-.|...+.+.|+++.|...|+.. + -.+...++..|..++ .+.|+++.|...++++.+..|. +..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~-~~~g~~~~A~~~~~~al~l~P~-~~~~ 82 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV-YQQGDLDKALLLTKKLLELDPE-HQRA 82 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCC-CHHH
Confidence 344555555556665555555443 0 012455666677777 7778888888888888887777 5444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.50 E-value=1.8 Score=32.54 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 186 LDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 186 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
.++|..+|++.. ..++.++..+...+.+.|++++|+..|+++...
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455555555442 123444555555566666666666666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.15 E-value=1.1 Score=37.21 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHhcCchHHHH
Q 038206 357 SEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG---NIDEALHLVSNM-PMK-P--DAVIWRSLLDACCKKHASVVLSE 429 (614)
Q Consensus 357 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~~~~~~~a~ 429 (614)
..+.+-|.+..+. + .++..+.-.+..++.+.+ +++++..++++. ... | +...+..|--++ .+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~-~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN-YRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHTSCHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HHccCHHHHH
Confidence 3344444444331 2 255566566666666666 455666666655 212 4 233445555567 8889999999
Q ss_pred HHHHHHHHhcCCCCchh
Q 038206 430 EVAKQVIESEGGICSGV 446 (614)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (614)
+.++.+++..|. +...
T Consensus 92 ~y~~~lL~ieP~-n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQ-NNQA 107 (152)
T ss_dssp HHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHhcCCC-CHHH
Confidence 999999999998 5544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.92 E-value=5.4 Score=32.16 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
+....+..+..+...|+-++-.+++..+....+|++.....+..||.+.|+...+.++...+-+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445556667777777777777777754445666666777777777777777776666666655
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=88.87 E-value=2 Score=32.97 Aligned_cols=65 Identities=15% Similarity=-0.040 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG------GICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+..-...|...+ ...++++.|...++.+++... .+....+..|..+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~-~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455666677 888999999999999987631 12456788999999999999999999998865
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.56 E-value=21 Score=35.85 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhc--CCCcc---HHHHHHHHHHHhccCCHHHHHHHHHHHHHh-cCC--CCC--
Q 038206 306 SWNSIILGFALHGRAEAALKYFDRLVVEE--SFSPN---SITFVGVLSACNHRGMVSEGRDYFDVMINE-YNI--TPV-- 375 (614)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~--~p~-- 375 (614)
....|...|-..|++.+|.+++.++ ..+ |..+. ...+...+..|...+++..|..+...+... ... .|+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l-~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCEL-QVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH-HHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3455667788888888888888887 432 22222 134556667788888999888888876421 111 222
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
...|..++..+...+++.+|.+.|.+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345677888888888888888777665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.17 E-value=2 Score=46.22 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=48.1
Q ss_pred HhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 420 KKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 420 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
...|+++.|+++.++....-|. +-.+|..|..+|.+.|+|+.|.-.++.+.
T Consensus 348 l~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6789999999999999999999 99999999999999999999999998874
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=88.10 E-value=0.02 Score=56.85 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
.+|+.|..++.. |.+.+|.+-|= ...|+..|..+|.+..+. |.+++-+..+...++.. -+...=+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~-~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA---RESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTS-SCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHh---cccccHHHHHHHHHh
Confidence 678888888888 88888877663 345666788899998888 99988888776555543 344556678889999
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC------------------------CCChhH
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML------------------------ERSLVS 203 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~------------------------~~~~~~ 203 (614)
.+++.+-.+++ -.|+..-...+-+-+...|.++.|.-+|..+. ..++.|
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88876654432 24565556677777888888888888887662 236789
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHH
Q 038206 204 WNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMY 283 (614)
Q Consensus 204 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y 283 (614)
|-.+-.+|...+.+.-|--.--.+. +.|| -...++..|-..|.+++-..+++.-... -.....+++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI--vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl----ErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV--VHAD--ELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH--CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS----TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc--ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC----CchhHHHHHHHHHHH
Confidence 9999999999999887654433332 2222 2334556677788888877777665521 223566888888888
Q ss_pred HhcCCHHHHHHHHhc----CCCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 038206 284 CKCGSLDIARQVFES----MPKR-------DLTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 284 ~~~g~~~~A~~~~~~----m~~~-------~~~~~~~li~~~~~~g~~~~A~~ 325 (614)
+|- ++++-.+-++. +.-| ....|.-++--|++..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 34444443332 2222 34579999999999898887754
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.47 E-value=6.8 Score=32.25 Aligned_cols=53 Identities=6% Similarity=-0.044 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCCCc
Q 038206 423 ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 423 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 476 (614)
+|.++|.++|+.+++...+. +..|......-.+.|+.+.|.+++.+....+-+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67778888888887764442 455556666667788888888888776665443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.05 E-value=26 Score=33.03 Aligned_cols=170 Identities=9% Similarity=0.016 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhcCChhHHHHHHH----Hhhhc-cCCChhhHHHHHHHHH
Q 038206 172 INNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFVQFGEFDSALKLFR----RMQIL-FEPDGYTFQSITSACA 246 (614)
Q Consensus 172 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-~~pd~~t~~~ll~a~~ 246 (614)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++-. -..+. +++|..+..-++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556677788888999988886542 223445566555544322 22223 5666666655555554
Q ss_pred hhCchh-HHHHHHHHHHHhcc-CC--CCccccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CC
Q 038206 247 GLATLS-LGMWAHAYILRHCD-HS--LVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALH---GR 319 (614)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~~~-~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g~ 319 (614)
....-+ .-..+...+++... .| -.-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+--+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432111 12233333333211 12 2236677888889999999999998877633222455555444443333 33
Q ss_pred HHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038206 320 AEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMIN 368 (614)
Q Consensus 320 ~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 368 (614)
..++-- ..-.+++. |...+++..|..+|+...+
T Consensus 184 ~~e~dl---------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAE---------------FFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH---------------HHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred cchHHH---------------HHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 333211 11222332 4456788888888887654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=83.33 E-value=8.7 Score=31.66 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=62.8
Q ss_pred CChhhHHHHHHHHHcCCCCc------hHHHHHHHHHHHcCCCCCCcc----hHHHHHHH---HHccCCcHHHHHHHHHHH
Q 038206 96 PNSFTWNTLIRACARSVDAK------PQAIVLFQRMIEQGNVLPDKH----TFPFALKA---CAYLFAFSQGKQAHAHIF 162 (614)
Q Consensus 96 ~~~~~~~~li~~~~~~~~~~------~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 162 (614)
.|..+|=..+.-+-+. |++ ++.+++|++....- + |+.. .|..+.-- +...+|.+.|+++|..++
T Consensus 11 ~~yd~W~~yl~llE~~-g~p~~d~~l~rlrd~YerAia~~-P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKN-SVPLSDALLNKLIGRYSQAIEAL-P-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHHHHHHHHS-C-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHHHHHcC-C-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4677787778777777 888 77888888777643 3 4432 12221111 123378888888888887
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 163 KRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 163 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
+..-.- ..+|-.....-.+.|++..|.+++...
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 763232 666766667777778888888877653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.19 E-value=6.8 Score=29.64 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
+.-+..+-++.+ -...+.|+.....+.|.||.+.+++..|.++|+.++.+. .+...+|..+++
T Consensus 25 D~~e~rrglN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455677777777 677889999999999999999999999999999886643 334556776664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=3.1 Score=41.11 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=41.6
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh-----CCCccCCCc
Q 038206 414 LLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD-----KGVTKEPGC 481 (614)
Q Consensus 414 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 481 (614)
++.++ ...|+.+.+...+..+....|- +...|..|+.+|.++|+..+|.+.|+...+ .|+.|.|..
T Consensus 177 ~~~~~-l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAE-IACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44445 5566666676666666666666 666667777777777777777766665432 366665543
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.79 E-value=51 Score=34.77 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=17.1
Q ss_pred HHcCCHHHHHHHHHhCCCCCCH
Q 038206 387 ARAGNIDEALHLVSNMPMKPDA 408 (614)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~p~~ 408 (614)
...|+++.|++.++++++-|..
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl~ 570 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPFS 570 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC-
T ss_pred HHcCCHHHHHHHHHhCCCCCCC
Confidence 5789999999999988766643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.69 E-value=45 Score=33.32 Aligned_cols=314 Identities=11% Similarity=0.063 Sum_probs=149.0
Q ss_pred CCchHHHHHHHHHHHcC-----CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-hCCCCchhH--HHHHHHHHHhcC
Q 038206 113 DAKPQAIVLFQRMIEQG-----NVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFK-RGLVSDVYI--NNSLIHFYASCG 184 (614)
Q Consensus 113 ~~~~~A~~~~~~m~~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~~~~~g 184 (614)
+++++|++.+..+.+.. .. ........++..|...++++...+.+..+.+ +|..+...+ .+.++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~-s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLA-SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 56777777766655431 11 2344567778888888888887776665554 332222211 122233333333
Q ss_pred CHH--HHHHHHhhcCC---C-------ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCch
Q 038206 185 HLD--LANKVFDNMLE---R-------SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATL 251 (614)
Q Consensus 185 ~~~--~A~~~f~~m~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~ 251 (614)
..+ .-..+.+.... . .......|...|-..|++.+|..++..+... ...+....
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------- 175 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------- 175 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-------------
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-------------
Confidence 222 22233332211 1 0112345777888889999999888888655 22221110
Q ss_pred hHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC--------CCC--HHHHHHHHHHHHhcCCHH
Q 038206 252 SLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP--------KRD--LTSWNSIILGFALHGRAE 321 (614)
Q Consensus 252 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~--------~~~--~~~~~~li~~~~~~g~~~ 321 (614)
-+.++...+..|...+++..|..++.++. .|+ ..-+..++..+...+++.
T Consensus 176 --------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~ 235 (445)
T 4b4t_P 176 --------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYL 235 (445)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred --------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 01223334444555555555554444432 111 123444455555566666
Q ss_pred HHHHHHHHHhhhcCCCccHHHHH-----HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHc--CCHHH
Q 038206 322 AALKYFDRLVVEESFSPNSITFV-----GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARA--GNIDE 394 (614)
Q Consensus 322 ~A~~l~~~m~~~~g~~p~~~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~ 394 (614)
+|-+.|.+......+.-|...+. .++......... .-..+......+ ..-++...|..++.+|... .+++.
T Consensus 236 ~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~-~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~ 313 (445)
T 4b4t_P 236 EVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN-LQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPI 313 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS-TTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHH
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHH
Confidence 66555555422211111221111 111111111111 111222222222 2235677888899998764 35677
Q ss_pred HHHHHHhCC-CC-------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHH
Q 038206 395 ALHLVSNMP-MK-------PDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 395 A~~~~~~m~-~~-------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 466 (614)
+.+.|...- -. .....|..|.... ..+. +- .+.+.. +..++..+.....- ..+++...
T Consensus 314 ~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v-~ehn-l~-------~i~k~Y---s~I~l~~la~lL~l--~~~evE~~ 379 (445)
T 4b4t_P 314 VQKTYEPVLNEDDLAFGGEANKHHWEDLQKRV-IEHN-LR-------VISEYY---SRITLLRLNELLDL--TESQTETY 379 (445)
T ss_dssp HHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHH-HHHH-HH-------HHHHHE---EEEEHHHHHHHHTS--CHHHHHHH
T ss_pred HHHHHHHHhcccchhhhcchhhHHHHHHHHHH-HHHH-HH-------HHHHHh---ceeeHHHHHHHhCc--CHHHHHHH
Confidence 777776541 01 1133455555554 3331 11 111111 23444444444432 46788888
Q ss_pred HHHHHhCCCc
Q 038206 467 RKLMTDKGVT 476 (614)
Q Consensus 467 ~~~m~~~g~~ 476 (614)
...|...|..
T Consensus 380 ls~mI~~g~i 389 (445)
T 4b4t_P 380 ISDLVNQGII 389 (445)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHCCCE
Confidence 8888776653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.60 E-value=13 Score=31.15 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMK 405 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (614)
...---+..+|.+.|+.++|+.+++.+|.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344445667777788888888888777644
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=57 Score=34.20 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHhhhc-CCCccHH--HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 318 GRAEAALKYFDRLVVEE-SFSPNSI--TFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
.+.+.|..+|... ... ...+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~-~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSL-AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHH-HHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhh-hhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 3789999999887 433 3333322 2222333344455344555566655332 2343344455555567899999
Q ss_pred HHHHHHhCCCCC-C-HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 395 ALHLVSNMPMKP-D-AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 395 A~~~~~~m~~~p-~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
|...|+.|+..+ + ..-..=+-.+. ...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~-~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLL-LERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHH-HHcCCHHHHHHHHHHHhc
Confidence 999999996443 2 22222233455 677999999999999864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.04 E-value=6.4 Score=29.77 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 117 QAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 117 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
+...-++.+...+.. |++....+.|+||.+.+|+..|.++++.++..- .+...+|..++
T Consensus 28 e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455555555666666 777777777777777777777777777665432 22234455444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 614 | ||||
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.002 |
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.4 bits (88), Expect = 0.002
Identities = 27/210 (12%), Positives = 60/210 (28%), Gaps = 11/210 (5%)
Query: 40 LTECKSMSQLKQIHAQALRTALPQQHKTLLIYSRI-IHFASFADLDYAFRVFYQIENPNS 98
+ I+ +A+ T L + Y+ + + + IE+ +
Sbjct: 74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 133
Query: 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAH 158
AR + ++F++ E H + A Y
Sbjct: 134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSVAFKI 191
Query: 159 AHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML-------ERSLVSWNVMIDAF 211
+ + + I + + + +F+ +L E+S W +
Sbjct: 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251
Query: 212 VQFGEFDSALKLFRRMQILFEPDGYTFQSI 241
G+ S LK+ +R F + Y +
Sbjct: 252 SNIGDLASILKVEKRRFTAF-REEYEGKET 280
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 614 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.37 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.82 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.73 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.64 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.6 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.56 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.1 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.96 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.96 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.94 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.93 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.9 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.68 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.68 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.62 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.38 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.35 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.25 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.07 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.64 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.8 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.63 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 93.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 89.55 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 89.22 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 83.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.06 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 81.26 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.19 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.2e-18 Score=170.26 Aligned_cols=364 Identities=12% Similarity=0.092 Sum_probs=276.2
Q ss_pred CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHH
Q 038206 81 ADLDYAFRVFYQIEN--P-NSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQA 157 (614)
Q Consensus 81 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 157 (614)
|++++|.+.|+++.+ | ++..|..+...+.+. |++++|+..|++..+.. + -+..++..+...+...|++++|...
T Consensus 13 G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~-p-~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIKQN-P-LLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHhhhhccccccccc
Confidence 899999988887753 4 466778888888888 99999999999888876 1 2456778888888889999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCC
Q 038206 158 HAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNM---LERSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPD 234 (614)
Q Consensus 158 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd 234 (614)
+....+.... +..........+...+....+....... .......+..........+....+...+.+.....+-+
T Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T d1w3ba_ 90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcch
Confidence 8888887633 3334444444444455544444444332 33455566666677777788888888777766554445
Q ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 038206 235 GYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSII 311 (614)
Q Consensus 235 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li 311 (614)
...+..+...+...+..+.|...+....+. .+.+...+..+...|...|++++|...|+... ..+...|..+.
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 244 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHh----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH
Confidence 666777777888889999999988888875 23346678888889999999999998888665 34667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 312 LGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
..+.+.|++++|++.|++. .. +.|+ ..++..+...+...|+.++|.+.++.... ..+.+...+..+...+.+.|
T Consensus 245 ~~~~~~~~~~~A~~~~~~a-l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRA-IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHH-HH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCHHHHHHHHHHH-HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCC
Confidence 8888999999999999887 43 3444 46677788888889999999999988865 44556778888888999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 391 NIDEALHLVSNM-PMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 391 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
++++|.+.|++. ...|+ ..+|..+...+ ...|++++|...|+++++..|+ ++.+|..|..+|.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~l~P~-~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 999999999875 55664 56777777777 8889999999999999998888 88888888888887764
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.5e-17 Score=164.54 Aligned_cols=352 Identities=11% Similarity=0.057 Sum_probs=287.1
Q ss_pred HHHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 038206 106 RACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG 184 (614)
Q Consensus 106 ~~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 184 (614)
..+.+. |++++|++.|+++.+.. | +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 7 ~~~~~~-G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 7 HREYQA-GDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 345566 99999999999999876 5 45677888888999999999999999999876 346778999999999999
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHH
Q 038206 185 HLDLANKVFDNMLE---RSLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYI 261 (614)
Q Consensus 185 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 261 (614)
++++|...+....+ .+...+..........+....+.............+..............+....+.......
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 99999999988733 344556666666667777777777776665554555555556666667777777777777777
Q ss_pred HHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc
Q 038206 262 LRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP 338 (614)
Q Consensus 262 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p 338 (614)
... .+.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..+.+. .... ..
T Consensus 162 ~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~ 235 (388)
T d1w3ba_ 162 IET----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLS-PN 235 (388)
T ss_dssp HHH----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH-HHHC-TT
T ss_pred hcc----CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHh-HHHh-hh
Confidence 664 34456678888999999999999999998764 346778999999999999999999999988 4432 33
Q ss_pred cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 038206 339 NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM--PMKPDAVIWRSLLD 416 (614)
Q Consensus 339 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 416 (614)
+...+..+...+.+.|++++|...|+...+ --+-+...+..+...|...|++++|.+.++.. ....+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHH
Confidence 456677788889999999999999999875 23335778899999999999999999999876 22356778888888
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+ ...|++++|+..++++++..|+ ++.++..+..+|.+.|++++|.+.+++..+
T Consensus 314 ~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 314 IK-REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HH-HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HH-HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88 9999999999999999999999 889999999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.5e-11 Score=115.59 Aligned_cols=266 Identities=12% Similarity=0.027 Sum_probs=170.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchh
Q 038206 176 LIHFYASCGHLDLANKVFDNML--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLS 252 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 252 (614)
....|.+.|++++|...|++.. .| +..+|..+...|...|++++|+..|.+..+..+-+...+..+...+...|+++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 3445667788888888887763 23 45677777788888888888888887766543334445555555666666666
Q ss_pred HHHHHHHHHHHhccCCCCccccH-HHHHHHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 038206 253 LGMWAHAYILRHCDHSLVTDVLV-NNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLV 331 (614)
Q Consensus 253 ~~~~~~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (614)
.+...+..+... .|+... ......... ..+.......+..+...+...+|.+.|.+..
T Consensus 105 ~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 105 QACEILRDWLRY-----TPAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHT-----STTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHh-----ccchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 666666665543 111100 000000000 0011111112233444566778888888763
Q ss_pred hhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHH
Q 038206 332 VEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAV 409 (614)
Q Consensus 332 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~ 409 (614)
....-.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 33333445667777888888999999999999988753 2335778888999999999999999999876 4455 566
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch-----------hHHHHHHHHhhcCChhhHHHH
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG-----------VYVLLSRVYASARRWNDVGLV 466 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 466 (614)
+|..+...| ...|++++|+..|+++++..|+ +.. .|..+-.++...|+.+.+...
T Consensus 242 a~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISC-INLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCc-ChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888 8999999999999999988766 332 334556666666776655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.4e-11 Score=115.03 Aligned_cols=223 Identities=12% Similarity=0.047 Sum_probs=151.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhc
Q 038206 207 MIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKC 286 (614)
Q Consensus 207 li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 286 (614)
....+.+.|++++|+..|++..+.-+-+ ...|..+...|...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------------------~~a~~~lg~~~~~~ 66 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKH--------------------------------------MEAWQYLGTTQAEN 66 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTC--------------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------HHHHHHHHHHHHHc
Confidence 4455667777777777777766432222 33444455555555
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH----------------HHHHHHH
Q 038206 287 GSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS----------------ITFVGVL 347 (614)
Q Consensus 287 g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~----------------~t~~~ll 347 (614)
|++++|...|++.. ..+...|..+...|...|++++|.+.+++. .. ..|+. ......+
T Consensus 67 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (323)
T d1fcha_ 67 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDW-LR--YTPAYAHLVTPAEEGAGGAGLGPSKRIL 143 (323)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--TSTTTGGGCC---------------CTT
T ss_pred CChHHHHHHHHhhhccccccccccccccccccccccccccccchhhH-HH--hccchHHHHHhhhhhhhhcccccchhhH
Confidence 55555555554432 123445555555555555555555555554 22 11111 0011112
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~ 425 (614)
..+...+...++...|....+...-.++...+..+...+...|++++|...|++. ...| +..+|..+...+ ...|++
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~ 222 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL-ANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcc-cccccc
Confidence 2233445677888888887665444556778889999999999999999999986 3345 577888888888 999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
++|.+.++++++..|. ++.+|..++.+|.+.|++++|.+.|++..+
T Consensus 223 ~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 223 EEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999998765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.90 E-value=1.1e-07 Score=90.53 Aligned_cols=184 Identities=10% Similarity=0.068 Sum_probs=125.8
Q ss_pred chhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-C-HHHHHHHHHHHHhcCCHHHHHH
Q 038206 250 TLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPK--R-D-LTSWNSIILGFALHGRAEAALK 325 (614)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~ 325 (614)
..+.+..+++..++. ..+.+...+..++..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.+
T Consensus 79 ~~~~a~~i~~ral~~---~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 79 FSDEAANIYERAIST---LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHTT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred chHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 345666677766654 3444556777778888888888888888887642 2 3 3468888888888888888888
Q ss_pred HHHHHhhhcCCCccHHHHHHHHH-HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 038206 326 YFDRLVVEESFSPNSITFVGVLS-ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-- 402 (614)
Q Consensus 326 l~~~m~~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 402 (614)
+|.+. ...+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+++.|+.+|++.
T Consensus 156 i~~~a-l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 156 IFKKA-REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHH-HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHH-HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88877 443221 2222322222 234457888888888888763 3345677788888888888888888888875
Q ss_pred --CCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 403 --PMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 403 --~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
+..|+ ...|...+.-- ..+|+.+.+..+++++.+.-|.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE-~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcc
Confidence 23332 45777777765 7788888888888888777665
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=7.4e-07 Score=85.83 Aligned_cols=254 Identities=9% Similarity=-0.027 Sum_probs=129.3
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCCCc------chHHHHHHHHHccCCcHHHHHHHHHHHHhCC--CC---chhHHHH
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLPDK------HTFPFALKACAYLFAFSQGKQAHAHIFKRGL--VS---DVYINNS 175 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~---~~~~~~~ 175 (614)
.+... |++++|+++|++..... |+. ..+..+...+...|++++|...+....+... .. ....+..
T Consensus 21 ~~~~~-g~~~~A~~~~~~aL~~~---~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 21 VAIND-GNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHC-CCHHHHHHHHHHHHhhC---cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 34556 88888888888877654 332 2445556667777888888888877765321 11 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC-------CCC----hhHHHHHHHHHHhcCChhHHHHHHHHhhhc-cC----CChhhHH
Q 038206 176 LIHFYASCGHLDLANKVFDNML-------ERS----LVSWNVMIDAFVQFGEFDSALKLFRRMQIL-FE----PDGYTFQ 239 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~-------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~----pd~~t~~ 239 (614)
+...|...|++..|...+.... .+. ...+..+...+...|+++.+...+...... .. ....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6667777788777777665541 111 124455666777778888888877776554 11 1112222
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHhccCCCCc---cccHHHHHHHHHHhcCCHHHHHHHHhcCCCC-------CHHHHHH
Q 038206 240 SITSACAGLATLSLGMWAHAYILRHCDHSLVT---DVLVNNSLIDMYCKCGSLDIARQVFESMPKR-------DLTSWNS 309 (614)
Q Consensus 240 ~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~-------~~~~~~~ 309 (614)
.....+...+....+...+............. ....+..+...+...|+.+.|...++...+. ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 33333444555555554444443321111111 1223334444455555555555555543311 1223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh----hcCCCccH-HHHHHHHHHHhccCCHHHHHHHHHH
Q 038206 310 IILGFALHGRAEAALKYFDRLVV----EESFSPNS-ITFVGVLSACNHRGMVSEGRDYFDV 365 (614)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~----~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 365 (614)
+...+...|++++|...+++. . ..+..|+. .++..+...+...|++++|.+.++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEEL-NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555555555555443 1 11222322 2333333444444555555444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1e-06 Score=84.85 Aligned_cols=261 Identities=14% Similarity=0.026 Sum_probs=161.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC--CCC------hhHHHHHHHHHHhcCChhHHHHHHHHhhhc--cCCChhhHHHHHHHH
Q 038206 176 LIHFYASCGHLDLANKVFDNML--ERS------LVSWNVMIDAFVQFGEFDSALKLFRRMQIL--FEPDGYTFQSITSAC 245 (614)
Q Consensus 176 li~~~~~~g~~~~A~~~f~~m~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~pd~~t~~~ll~a~ 245 (614)
....+...|++++|.+++++.. .|+ ...++.+...|...|++++|+..|++.... ..++..
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------- 88 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH--------- 88 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH---------
Confidence 3445566777777777766541 121 234555666666777777777777666432 111110
Q ss_pred HhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC-------CC----CHHHHHHHHHHH
Q 038206 246 AGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP-------KR----DLTSWNSIILGF 314 (614)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~-------~~----~~~~~~~li~~~ 314 (614)
.....+..+...|...|++..|...+.... .+ ....+..+...+
T Consensus 89 -------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 143 (366)
T d1hz4a_ 89 -------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 143 (366)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHH
Confidence 012234445556666777776666655432 11 123455566677
Q ss_pred HhcCCHHHHHHHHHHHhhhc----CCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEE----SFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-----VLEHYGCLVDL 385 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~~~~~li~~ 385 (614)
...|+.+.+...+... ... +......++......+...+....+...+........-.. ....+..+...
T Consensus 144 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 144 WAWARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHTTCHHHHHHHHHHH-HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhcchhhhHHHHHHH-HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 7888888888888776 332 2222234455555666777888888877766544222111 12345666777
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhc----CCC-CchhHHHHHHHH
Q 038206 386 LARAGNIDEALHLVSNM-PMKP-----DAVIWRSLLDACCKKHASVVLSEEVAKQVIESE----GGI-CSGVYVLLSRVY 454 (614)
Q Consensus 386 ~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~ 454 (614)
+...|+.++|...++.. ...| ....+..+...+ ...|+++.|...+++++... ..| ...++..+..+|
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 301 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 88899999999998876 2221 244566667777 88899999999999887542 111 245677889999
Q ss_pred hhcCChhhHHHHHHHHHh
Q 038206 455 ASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~~ 472 (614)
.+.|++++|.+.+++..+
T Consensus 302 ~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 302 WQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999987644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.73 E-value=6.3e-07 Score=85.03 Aligned_cols=177 Identities=10% Similarity=0.038 Sum_probs=118.2
Q ss_pred CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHhcCChhHHHHHHH
Q 038206 150 AFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE--R-S-LVSWNVMIDAFVQFGEFDSALKLFR 225 (614)
Q Consensus 150 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~~ 225 (614)
..+++..+++..++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+....+.|+.++|.++|.
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3466777888777655555666777888888888888888888887632 2 2 3368888888888888888888888
Q ss_pred HhhhccCCChhhHHHHHHH-HHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----
Q 038206 226 RMQILFEPDGYTFQSITSA-CAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---- 300 (614)
Q Consensus 226 ~m~~~~~pd~~t~~~ll~a-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---- 300 (614)
+.....+.+...|...... ....++.+.|..+++.+.+. .+.+...+...++...+.|+++.|..+|++..
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 8776533333333332221 23346677777777777764 34455667777777777777777777777642
Q ss_pred -CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 301 -KR--DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 301 -~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.| ....|...+..-..+|+.+.+.++++++
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 2346777776666777777777777766
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=6.7e-06 Score=77.89 Aligned_cols=126 Identities=10% Similarity=0.108 Sum_probs=85.3
Q ss_pred hHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCc-chHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 100 TWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDK-HTFPFALKACAYLF-AFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 100 ~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
.|+.+-..+.+. +.+++|+++++++++.. |+. ..|+....++...+ ++++|...++.+++.. +-+..+|+.+.
T Consensus 45 a~~~~~~~~~~~-e~~~~Al~~~~~ai~ln---P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 45 VYDYFRAVLQRD-ERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHT-CCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 455555566666 77788888888887776 444 35566555665554 4677777777777765 33566677777
Q ss_pred HHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 178 HFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 178 ~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
..+.+.|+.++|+..|+.+. ..+...|+.+...+.+.|++++|++.|+++.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777663 235667777777777777777777777776654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=1.4e-07 Score=86.96 Aligned_cols=193 Identities=13% Similarity=0.049 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHH
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMP---KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSA 349 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a 349 (614)
.++..+...|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|++.|++. .. +.|+ ..++..+..+
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~--~~p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV-LE--LDPTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHH-HH--HHhhhhhhHHHHHHH
Confidence 355566777777888888888777654 346677777888888888888888888777 33 2343 3456666677
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH---hcCch
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKPDAVIWRSLLDACCK---KHASV 425 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~~~~~ 425 (614)
+...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++...++. +..+.. ..+..
T Consensus 115 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHH
Confidence 77778888888888777653 1223333333444444555444443333322 11112112221 111101 11223
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+.+...+.......+. ...+|..+...|...|++++|.+.|++....
T Consensus 192 ~~~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHCCSHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhcCcc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3333333333333333 3456667778888888888888888876653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.3e-06 Score=81.20 Aligned_cols=125 Identities=5% Similarity=-0.045 Sum_probs=69.8
Q ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHh
Q 038206 138 FPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCG-HLDLANKVFDNML---ERSLVSWNVMIDAFVQ 213 (614)
Q Consensus 138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~f~~m~---~~~~~~~~~li~~~~~ 213 (614)
|+.+-..+.+.+..++|.++++.+++.. +-+..+|+....++...| ++++|+..++... ..+..+|+.+...+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 3444445556666777777777777654 234455666666666654 3677776666652 2345566666666667
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHH
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILR 263 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 263 (614)
.|++++|++.|+++.+.-+-+...|..+...+...++++.+...+..+++
T Consensus 125 l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~ 174 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 174 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777776666543233334444444444444444444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=3.6e-07 Score=87.96 Aligned_cols=226 Identities=7% Similarity=-0.100 Sum_probs=146.1
Q ss_pred ChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhC--chhHHHHHHHHHHHhccCCCCccccHHH-HHHHHHHhcCCHHHH
Q 038206 216 EFDSALKLFRRMQILFEPDGYTFQSITSACAGLA--TLSLGMWAHAYILRHCDHSLVTDVLVNN-SLIDMYCKCGSLDIA 292 (614)
Q Consensus 216 ~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~A 292 (614)
++++|+..++......+-+...+.....++...+ +.+.+...+..+.+. -+++...+. .....+...|..++|
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh----CchhhhhhhhHHHHHHHhccccHHH
Confidence 3445555555554332223333333333333333 244555555555543 122333333 344677778999999
Q ss_pred HHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 293 RQVFESMPK---RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 293 ~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
...++...+ .|..+|+.+...+.+.|+.++|...+... .. +.|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~-~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP-EN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC-HH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh-HH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHH-
Confidence 999988773 36788999988999999888887666543 21 223322 223334455666677777777654
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhH
Q 038206 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVY 447 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 447 (614)
.-+++...+..+...+...|+.++|...+.+. +..| +..+|..+...+ ...|+.++|.+.++++++.+|. +...|
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~eA~~~~~~ai~ldP~-~~~y~ 313 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL-DPLLYEKETLQYFSTLKAVDPM-RAAYL 313 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTGGGHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCcc-cHHHH
Confidence 33445556667778888889999999988876 5556 455677777777 8999999999999999999987 67777
Q ss_pred HHHHHHHh
Q 038206 448 VLLSRVYA 455 (614)
Q Consensus 448 ~~l~~~~~ 455 (614)
..|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.5e-05 Score=71.26 Aligned_cols=187 Identities=12% Similarity=-0.067 Sum_probs=96.0
Q ss_pred hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 038206 137 TFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLE---RSLVSWNVMIDAFVQ 213 (614)
Q Consensus 137 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 213 (614)
+|..+...+...|++++|.+.|+..++.. +.++.+|+.+..+|.+.|++++|.+.|++..+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 44444556666677777777777776654 33556666777777777777777777766622 244566667777777
Q ss_pred cCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCC----H
Q 038206 214 FGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGS----L 289 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----~ 289 (614)
.|++++|+..|++..+..+.+......+..+....+..+....+....... .++...++ ++..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-----chhhhhhh-HHHHHHHHHHHHHHH
Confidence 777777777777665543333333333333333333333333333333322 11111121 2222221111 2
Q ss_pred HHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 290 DIARQVFESMP--KR-DLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 290 ~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
+.+...+.... .| ...+|..+...|...|+.++|++.|++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22222221111 01 2235555666677777777777777655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.45 E-value=2.2e-06 Score=82.14 Aligned_cols=256 Identities=9% Similarity=0.009 Sum_probs=160.5
Q ss_pred HHHHHHHHhc-CChhHHHHHHhcCCC--CCh-hhHHHHH---HHHHcC------CCCchHHHHHHHHHHHcCCCCC-Ccc
Q 038206 71 YSRIIHFASF-ADLDYAFRVFYQIEN--PNS-FTWNTLI---RACARS------VDAKPQAIVLFQRMIEQGNVLP-DKH 136 (614)
Q Consensus 71 ~~~li~~~~~-g~~~~A~~~f~~m~~--~~~-~~~~~li---~~~~~~------~~~~~~A~~~~~~m~~~~~~~p-~~~ 136 (614)
.+.++....+ ...++|+.+++...+ |+. ..|+..- ..+... .|.+++|+.+|+...+.. | +..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~---pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC---CCcHH
Confidence 3444444444 445788888887654 543 3454322 222222 044678999999998876 4 444
Q ss_pred hHHHHHHHHHccC--CcHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHH
Q 038206 137 TFPFALKACAYLF--AFSQGKQAHAHIFKRGLVSDVYINN-SLIHFYASCGHLDLANKVFDNMLER---SLVSWNVMIDA 210 (614)
Q Consensus 137 t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~ 210 (614)
.|..+..++...+ +++++...+..+++... ++...+. .+...+...|..+.|+..++...+. +..+|+.+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5666666665554 57889999999888753 3444443 4446777789999999999988553 56788889999
Q ss_pred HHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHH
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLD 290 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 290 (614)
+.+.|++++|...+.+.... .|+. ......+...+..+.+.+.+...... -+++...+..+...+...|+.+
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~----~~~~~~~~~~l~~~~~~~~~~~ 259 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV-LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG----RAEPLFRCELSVEKSTVLQSEL 259 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH-HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS----CCCCSSSCCCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh-HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh----CcchhhHHHHHHHHHHHHhhHH
Confidence 99999998887666554332 1111 12233344556666666666666553 2344445555666666677777
Q ss_pred HHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHH
Q 038206 291 IARQVFESMPKRDL---TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSI 341 (614)
Q Consensus 291 ~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~ 341 (614)
+|...|.+..+.+. .+|..+...|...|+.++|++.|++. .+ +.|+..
T Consensus 260 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~a-i~--ldP~~~ 310 (334)
T d1dcea1 260 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL-KA--VDPMRA 310 (334)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHH-HH--HCGGGH
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH--HCcccH
Confidence 77777776665433 45556666677777777777777766 33 455543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=8.1e-05 Score=64.35 Aligned_cols=125 Identities=10% Similarity=-0.003 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHcc
Q 038206 69 LIYSRIIHFASFADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYL 148 (614)
Q Consensus 69 ~~~~~li~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 148 (614)
.+||.-+..+.+|+++.|.+.|+++..|+...|..+-..|... |++++|++.|++.++.+ + -+...|..+..++...
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~-g~~~~A~~~~~kAl~ld-p-~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRD-K-HLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-T-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHh-h-hhhhhHHHHHHHHHhh
Confidence 4566655555559999999999999888888998888899999 99999999999999887 2 3566788888888999
Q ss_pred CCcHHHHHHHHHHHHhCCCCc---------------hhHHHHHHHHHHhcCCHHHHHHHHhhc
Q 038206 149 FAFSQGKQAHAHIFKRGLVSD---------------VYINNSLIHFYASCGHLDLANKVFDNM 196 (614)
Q Consensus 149 ~~~~~a~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~f~~m 196 (614)
|++++|...|+..++...... ..++..+..+|.+.|++++|.+.|+..
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999988876421110 123444555666777777777766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=1e-05 Score=70.80 Aligned_cols=101 Identities=9% Similarity=-0.088 Sum_probs=69.6
Q ss_pred ccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038206 338 PNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLL 415 (614)
Q Consensus 338 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 415 (614)
|+...+...-..+.+.|++++|...|...++. -+.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55566666667777777777777777776652 2335666777777777777777777777765 4555 355666676
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 416 DACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 416 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
.++ ...|+++.|...|+++++..|.
T Consensus 80 ~~~-~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQ-LEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHCCCHHHHHHHHHHHHHhCcc
Confidence 666 7777777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=2.3e-05 Score=61.67 Aligned_cols=98 Identities=11% Similarity=0.024 Sum_probs=50.4
Q ss_pred HHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchH
Q 038206 349 ACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVV 426 (614)
Q Consensus 349 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~ 426 (614)
.+...|++++|...|...++. -+.+...|..+..+|.+.|++++|+..++.. .+.| +...|..+..++ ...|+++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~~~ 88 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL-EFLNRFE 88 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH-HHccCHH
Confidence 344555555555555555432 1224445555555555555555555555544 2222 444555555555 5555555
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH
Q 038206 427 LSEEVAKQVIESEGGICSGVYVLL 450 (614)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~l 450 (614)
+|+..+++.++..|. ++..+..+
T Consensus 89 ~A~~~~~~a~~~~p~-~~~~~~~l 111 (117)
T d1elwa_ 89 EAKRTYEEGLKHEAN-NPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHH
Confidence 555555555555555 44444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.6e-05 Score=62.64 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=80.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCC
Q 038206 382 LVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARR 459 (614)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (614)
-...+.+.|++++|+..|++. ...| +...|..+-.++ ...|+++.|+..+.++++.+|. ++..|..+..+|...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAY-AKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccc-cccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence 456688899999999999987 3345 677888888888 9999999999999999999999 99999999999999999
Q ss_pred hhhHHHHHHHHHhC
Q 038206 460 WNDVGLVRKLMTDK 473 (614)
Q Consensus 460 ~~~a~~~~~~m~~~ 473 (614)
+++|...+++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988763
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=2.1e-05 Score=68.74 Aligned_cols=95 Identities=7% Similarity=0.002 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCc-cHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCC-ChhHH
Q 038206 302 RDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSP-NSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITP-VLEHY 379 (614)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 379 (614)
|+..........|.+.|++++|+..|.+. ... .| +...|..+..+|.+.|++++|...|+..+ .+.| +...|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~ka-l~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRA-ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHH
Confidence 33444445555666667777777777665 221 23 33455556666666677777777666664 3444 35566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC
Q 038206 380 GCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m 402 (614)
..+..+|.+.|++++|+..|++.
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666777777776666653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.00028 Score=60.77 Aligned_cols=139 Identities=9% Similarity=-0.046 Sum_probs=80.8
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHHhccCCHHH
Q 038206 280 IDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPN-SITFVGVLSACNHRGMVSE 358 (614)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 358 (614)
...+...|+++.|.+.|+++.+++..+|..+-..|...|++++|++.|++. .+ +.|+ ...|..+-.++.+.|++++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA-l~--ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS-IN--RDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHH-HH--HhhhhhhhHHHHHHHHHhhccHHH
Confidence 344566677777777777766666666766777777777777777777665 33 2333 2455555666666777777
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 359 GRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 359 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
|...|+..... .+++... .|...| +..+++ ..++..+-.++ .+.|+++.|.+.++++.+
T Consensus 89 A~~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~-~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 89 AIKDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHh
Confidence 76666665431 1111100 000000 000111 23444555566 788889999998888888
Q ss_pred hcCC
Q 038206 438 SEGG 441 (614)
Q Consensus 438 ~~~~ 441 (614)
..+.
T Consensus 149 ~~~~ 152 (192)
T d1hh8a_ 149 MKSE 152 (192)
T ss_dssp TCCS
T ss_pred cCCC
Confidence 7776
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.94 E-value=1.7e-05 Score=61.98 Aligned_cols=88 Identities=14% Similarity=-0.009 Sum_probs=76.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
.+...+.+.|++++|...|++. ...| +...|..+...+ ...|+++.|+..++++++..|. +..++..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhh-hhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 3556778899999999999886 4445 577888888888 9999999999999999999999 9999999999999999
Q ss_pred ChhhHHHHHHHH
Q 038206 459 RWNDVGLVRKLM 470 (614)
Q Consensus 459 ~~~~a~~~~~~m 470 (614)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=0.00016 Score=67.14 Aligned_cols=138 Identities=10% Similarity=-0.048 Sum_probs=75.7
Q ss_pred CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCC----cchHHHHHHHHHccCCcHHHHH
Q 038206 81 ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPD----KHTFPFALKACAYLFAFSQGKQ 156 (614)
Q Consensus 81 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~ 156 (614)
+++++|..+|.+ ....|... +++++|.+.|.+.........+ ..+|..+..++...|++++|..
T Consensus 31 ~~~~~Aa~~y~~-----------aa~~y~~~-~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~ 98 (290)
T d1qqea_ 31 YKFEEAADLCVQ-----------AATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (290)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHH-----------HHHHHHHC-cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455666655443 34556666 7777777777776553111011 2356666666777777777777
Q ss_pred HHHHHHHhCCC-----CchhHHHHHHHHHHh-cCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhcCChhHHH
Q 038206 157 AHAHIFKRGLV-----SDVYINNSLIHFYAS-CGHLDLANKVFDNMLE-----RS----LVSWNVMIDAFVQFGEFDSAL 221 (614)
Q Consensus 157 ~~~~~~~~g~~-----~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~ 221 (614)
.+....+.-.. ....++..+...|-. .|++++|.+.+++..+ .+ ..+|..+...|.+.|++++|+
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 77665542111 112334444444533 4666666666655411 11 224555666666666666666
Q ss_pred HHHHHhhhc
Q 038206 222 KLFRRMQIL 230 (614)
Q Consensus 222 ~~~~~m~~~ 230 (614)
+.|++....
T Consensus 179 ~~~~~~~~~ 187 (290)
T d1qqea_ 179 DIYSKLIKS 187 (290)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 666665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.90 E-value=0.00044 Score=64.04 Aligned_cols=92 Identities=18% Similarity=0.069 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHhcCCC--C-------CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCC-Ccc---
Q 038206 274 LVNNSLIDMYCKCGSLDIARQVFESMPK--R-------DL-TSWNSIILGFALHGRAEAALKYFDRLVVEESF-SPN--- 339 (614)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~m~~--~-------~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-~p~--- 339 (614)
.++..+...|.+.|++++|...|++... + .. ..|..++..+...|+.+.|...+++. ..... -++
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~-~~~~~~~~~sre 237 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG-QSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG-GCC---------
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCccchHH
Confidence 3456666666666666666666665331 1 11 12233334455566677777666655 33211 011
Q ss_pred HHHHHHHHHHHhc--cCCHHHHHHHHHHH
Q 038206 340 SITFVGVLSACNH--RGMVSEGRDYFDVM 366 (614)
Q Consensus 340 ~~t~~~ll~a~~~--~g~~~~a~~~~~~~ 366 (614)
......++.++.. .+.++++...|+.+
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1234455555543 34466666666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00011 Score=61.38 Aligned_cols=116 Identities=6% Similarity=-0.085 Sum_probs=88.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCc
Q 038206 347 LSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHAS 424 (614)
Q Consensus 347 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~ 424 (614)
-..|.+.|++++|...|....+. -+-+...|..+..+|...|++++|.+.|++. ...| +..+|..+..++ ...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~-~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN-MALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH-HHcCC
Confidence 34567889999999999888763 2336778888999999999999999999877 4445 567888888888 88999
Q ss_pred hHHHHHHHHHHHHhcCCCCchhHHHHHHHH--hhcCChhhHHHH
Q 038206 425 VVLSEEVAKQVIESEGGICSGVYVLLSRVY--ASARRWNDVGLV 466 (614)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 466 (614)
+++|...++++.+..|. +...+..+..+. ...+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988 777766654443 334445555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=7.5e-05 Score=62.38 Aligned_cols=91 Identities=11% Similarity=0.058 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 381 CLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
.....|.+.|++++|+..|++. ...| +...|..+...+ ...|+++.|...|+++++.+|. +..+|..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAY-LRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHH-HhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 3456788999999999999987 4445 566777777777 9999999999999999999999 8999999999999999
Q ss_pred ChhhHHHHHHHHHhC
Q 038206 459 RWNDVGLVRKLMTDK 473 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~ 473 (614)
++++|...+++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.74 E-value=0.007 Score=56.29 Aligned_cols=273 Identities=11% Similarity=0.066 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc
Q 038206 69 LIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY 147 (614)
Q Consensus 69 ~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 147 (614)
.--..+...|.+ |.++.|..+|..+.. |..++..+.+. ++++.|.+++... -+..+|..+..+|..
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l-~~~~~avd~~~k~-------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHL-GEYQAAVDGARKA-------NSTRTWKEVCFACVD 81 (336)
T ss_dssp --------------CTTTHHHHHHHTTC-----HHHHHHHHHTT-TCHHHHHHHHHHH-------TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhh-ccHHHHHHHHHHc-------CCHHHHHHHHHHHHh
Confidence 334455666666 899999999987764 77788888888 9999998887644 355688888888887
Q ss_pred cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhcCChhHHHHHH
Q 038206 148 LFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNML---ERSLVSWNVMIDAFVQFGEFDSALKLF 224 (614)
Q Consensus 148 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 224 (614)
......+ .+.......++.....++..|-..|.+++...+++... ..+...++-++..|++.+ .++.++.+
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 6655443 22233344455566788999999999999999999753 345667889999998864 34444444
Q ss_pred HHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHHHHHHHhcCC----
Q 038206 225 RRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMP---- 300 (614)
Q Consensus 225 ~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~m~---- 300 (614)
+... +..-..-+++.|-+.+- |.-++-.|.+.|++++|..+.-.-.
T Consensus 156 ~~~s-----~~y~~~k~~~~c~~~~l-------------------------~~elv~Ly~~~~~~~~A~~~~i~~~~~~~ 205 (336)
T d1b89a_ 156 ELFW-----SRVNIPKVLRAAEQAHL-------------------------WAELVFLYDKYEEYDNAIITMMNHPTDAW 205 (336)
T ss_dssp HHHS-----TTSCHHHHHHHHHTTTC-------------------------HHHHHHHHHHTTCHHHHHHHHHHSTTTTC
T ss_pred Hhcc-----ccCCHHHHHHHHHHcCC-------------------------hHHHHHHHHhcCCHHHHHHHHHHcchhhh
Confidence 4332 22233334444443333 3445666777777776655443221
Q ss_pred -----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Q 038206 301 -----------KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINE 369 (614)
Q Consensus 301 -----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 369 (614)
..|+..|-..+..|... +++-...++..+ .. .+.| ..++.-+.+.+++.....+++....
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v-~~-~~d~-----~r~V~~~~k~~~l~li~p~Le~v~~- 276 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVL-SP-RLDH-----TRAVNYFSKVKQLPLVKPYLRSVQN- 276 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHH-GG-GCCH-----HHHHHHHHHTTCTTTTHHHHHHHHT-
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc-CHHHHHHHHHHh-cc-CCCH-----HHHHHHHHhcCCcHHHHHHHHHHHH-
Confidence 11333333344444332 222333333322 11 1111 2244444555666666666666543
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 370 YNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.+ +..+.++|.+.|...++++.-++.++.-
T Consensus 277 ~n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 277 HN---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred cC---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 23 3457788888888888876665555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00045 Score=58.09 Aligned_cols=85 Identities=9% Similarity=-0.055 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
.+|+.+..+|.+.|++++|+..++.. .+.| ++..|..+..++ ...|+++.|...|+++++.+|+ |......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH-LAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHH-HHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 35677888899999999999988876 4455 677888888888 9999999999999999999998 888887777776
Q ss_pred hhcCChhhH
Q 038206 455 ASARRWNDV 463 (614)
Q Consensus 455 ~~~g~~~~a 463 (614)
.+.+...+.
T Consensus 141 ~~~~~~~~~ 149 (170)
T d1p5qa1 141 QRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.021 Score=52.87 Aligned_cols=280 Identities=12% Similarity=0.061 Sum_probs=135.0
Q ss_pred CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 038206 133 PDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMIDAFV 212 (614)
Q Consensus 133 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 212 (614)
||..-...+.+-|.+.|.++.|..++..+ .-|..++..|.+.++++.|.+++.... +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 56666666677777777777777777643 224566677777777777777776543 4557777777777
Q ss_pred hcCChhHHHHHHHHhhhc-cCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHHHHHHhcCCHHH
Q 038206 213 QFGEFDSALKLFRRMQIL-FEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDI 291 (614)
Q Consensus 213 ~~g~~~~A~~~~~~m~~~-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 291 (614)
+.....-| .+... ...+......++..+-..|..+....+++..... -..+..+++-++..|++.+. ++
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~----~~~~~~~~~~L~~lyak~~~-~k 150 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFKP-QK 150 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTCH-HH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC----CccchHHHHHHHHHHHHhCh-HH
Confidence 66554332 11112 3334445566777777777777666666655421 23455567777777877643 33
Q ss_pred HHHHHhcCCCC-CHH----------HHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHH
Q 038206 292 ARQVFESMPKR-DLT----------SWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGR 360 (614)
Q Consensus 292 A~~~~~~m~~~-~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 360 (614)
-.+.+.....+ |.. .|.-++--|.+.|++++|..+.- .. .|+..-....+..+.+..+++...
T Consensus 151 l~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~---~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 151 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH---PTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS---TTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc---chhhhhHHHHHHHHHccCChHHHH
Confidence 33333332211 111 13334444444444444444431 11 112111222333344444444433
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcC
Q 038206 361 DYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEG 440 (614)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 440 (614)
++....... .|+ ..+.|+......-+..+ ++.-+ .+.+++......++...+.+
T Consensus 225 ~~i~~yL~~---~p~--~i~~lL~~v~~~~d~~r-------------------~V~~~-~k~~~l~li~p~Le~v~~~n- 278 (336)
T d1b89a_ 225 RAIQFYLEF---KPL--LLNDLLMVLSPRLDHTR-------------------AVNYF-SKVKQLPLVKPYLRSVQNHN- 278 (336)
T ss_dssp HHHHHHHHH---CGG--GHHHHHHHHGGGCCHHH-------------------HHHHH-HHTTCTTTTHHHHHHHHTTC-
T ss_pred HHHHHHHHc---CHH--HHHHHHHHhccCCCHHH-------------------HHHHH-HhcCCcHHHHHHHHHHHHcC-
Confidence 333333221 121 11223333222222222 33344 55566666666666655544
Q ss_pred CCCchhHHHHHHHHhhcCChhhHHHHH
Q 038206 441 GICSGVYVLLSRVYASARRWNDVGLVR 467 (614)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~a~~~~ 467 (614)
+....++|...|...++++.-.+..
T Consensus 279 --~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 --NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3467788888888888865544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00017 Score=56.89 Aligned_cols=103 Identities=10% Similarity=-0.072 Sum_probs=74.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 038206 344 VGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI---DEALHLVSNM-PMKPDA---VIWRSLLD 416 (614)
Q Consensus 344 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 416 (614)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|+.++++. ...|+. .+|..|-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677777888888899888888752 234667777788888765544 4688888876 334433 35667777
Q ss_pred HHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHH
Q 038206 417 ACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450 (614)
Q Consensus 417 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (614)
+| ...|++++|++.|+++++.+|. +......+
T Consensus 81 ~y-~~~g~~~~A~~~~~~aL~~~P~-~~~A~~l~ 112 (122)
T d1nzna_ 81 GN-YRLKEYEKALKYVRGLLQTEPQ-NNQAKELE 112 (122)
T ss_dssp HH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HH-HHHhhhHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 77 8889999999999999999888 66554433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.44 E-value=0.03 Score=50.06 Aligned_cols=226 Identities=12% Similarity=0.006 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHhccCCCCccccHHHHHH
Q 038206 201 LVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRHCDHSLVTDVLVNNSLI 280 (614)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li 280 (614)
+..+..|...+-+.+++++|++.|++..+. | +...+..|.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------------------------------------g---~~~A~~~Lg 41 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-------------------------------------K---ENSGCFNLG 41 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------------------------T---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------------C---CHHHHHHHH
Confidence 445556666666677777777777765422 2 122233334
Q ss_pred HHHHh----cCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHH--
Q 038206 281 DMYCK----CGSLDIARQVFESMPKR-DLTSWNSIILGFAL----HGRAEAALKYFDRLVVEESFSPNSITFVGVLSA-- 349 (614)
Q Consensus 281 ~~y~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a-- 349 (614)
.+|.. ..+...|...+....++ +...+..+...+.. ..+.+.|...++.. ...|..+....+ .....
T Consensus 42 ~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a-~~~g~~~a~~~l-~~~~~~~ 119 (265)
T d1ouva_ 42 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA-CDLKYAEGCASL-GGIYHDG 119 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTTCHHHHHHH-HHHHHHC
T ss_pred HHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhh-hhhhhhhHHHhh-cccccCC
Confidence 44433 34555666555544432 33444444433332 45677788888776 554433222221 11111
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh----
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLAR----AGNIDEALHLVSNMPMKPDAVIWRSLLDACCKK---- 421 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---- 421 (614)
.........+...+..... ..+...+..|...|.. ..+...+...++...-..+......|-..+ ..
T Consensus 120 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y-~~g~~~ 194 (265)
T d1ouva_ 120 KVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY-HHGEGA 194 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTCSS
T ss_pred CcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhc-ccCccc
Confidence 2234556667777666543 2455666677777765 445667777766553234556555554444 33
Q ss_pred cCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCCc
Q 038206 422 HASVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGVT 476 (614)
Q Consensus 422 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~ 476 (614)
..+.+.|...|++..+.| ++..+..|..+|.+ ..+.++|.+.|++..+.|-.
T Consensus 195 ~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 195 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 468999999999998886 45777788888875 34789999999998877753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.38 E-value=0.00048 Score=53.27 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=47.6
Q ss_pred HHHcCCCCchHHHHHHHHHHHcCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 038206 107 ACARSVDAKPQAIVLFQRMIEQGNVLP-DKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH 185 (614)
Q Consensus 107 ~~~~~~~~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 185 (614)
.+.+. |++++|+..|++..... | +..+|..+..++...+++++|...++.+++.. +.+..++..|...|...|+
T Consensus 25 ~~~~~-g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 25 SMLKL-ANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-hhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 44455 66666666666666554 3 34455555555566666666666666665544 2244555555556666666
Q ss_pred HHHHHHHHhh
Q 038206 186 LDLANKVFDN 195 (614)
Q Consensus 186 ~~~A~~~f~~ 195 (614)
.++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.37 E-value=0.0016 Score=54.39 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 378 HYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
.|+.+..+|.+.|++++|+..++.. .+.| +...|..+..++ ...|++++|...|+++++.+|. +......+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~-~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ-LLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4666778888999999999988876 3334 677888888888 9999999999999999999988 8877777766666
Q ss_pred hcCChh-hHHHHHHHHH
Q 038206 456 SARRWN-DVGLVRKLMT 471 (614)
Q Consensus 456 ~~g~~~-~a~~~~~~m~ 471 (614)
+.+... ...+++..|-
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 555443 3445554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.001 Score=52.08 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=67.7
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---HHHHHHHHhhcCCCC-----hhHHHHHHHH
Q 038206 139 PFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGH---LDLANKVFDNMLERS-----LVSWNVMIDA 210 (614)
Q Consensus 139 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~~-----~~~~~~li~~ 210 (614)
..+++.+...+++++|++.|+..++.+ +.++.++..+..++.+.++ .++|..+|++....+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356667777788888888888888776 4466677777777776554 445888888875532 2256777888
Q ss_pred HHhcCChhHHHHHHHHhhhccCCCh
Q 038206 211 FVQFGEFDSALKLFRRMQILFEPDG 235 (614)
Q Consensus 211 ~~~~g~~~~A~~~~~~m~~~~~pd~ 235 (614)
|.+.|++++|++.|++..+. .|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~-~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT-EPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHhhhHHHHHHHHHHHHh-CcCC
Confidence 88888888888888888763 4543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0015 Score=54.82 Aligned_cols=62 Identities=6% Similarity=-0.089 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+|+.+..+| .+.|+++.|+..++++++.+|. ++.+|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y-~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCH-LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 455566666 8999999999999999999999 9999999999999999999999999998763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.27 E-value=0.0012 Score=55.30 Aligned_cols=85 Identities=8% Similarity=-0.041 Sum_probs=69.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 038206 375 VLEHYGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSR 452 (614)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 452 (614)
....|..+..+|.+.|++++|+..+++. .+.| +...|..+..++ ...|+++.|+..|+++++..|+ +...+..+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~-~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~ 153 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW-QGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHH-HHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456777888999999999999999887 5555 677888888898 9999999999999999999999 8887777766
Q ss_pred HHhhcCChh
Q 038206 453 VYASARRWN 461 (614)
Q Consensus 453 ~~~~~g~~~ 461 (614)
++.+.....
T Consensus 154 ~~~~l~~~~ 162 (169)
T d1ihga1 154 VKQKIKAQK 162 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.26 E-value=0.0038 Score=51.06 Aligned_cols=62 Identities=8% Similarity=-0.090 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 409 VIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 409 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
.+|..+..++ .+.|+++.|++.++++++.+|. +..+|..++.+|...|++++|...|++..+
T Consensus 68 ~~~~Nla~~~-~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCY-NKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHH-HHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555566666 7888888888888888888888 888888888888888888888888877655
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.25 E-value=0.002 Score=52.85 Aligned_cols=126 Identities=7% Similarity=-0.117 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 305 TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
..+......+.+.|++.+|+..|.+. ... .|.. ....-......... ....+|+.+..
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~a-l~~--~~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEA-LDF--FIHT-----------EEWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-HHT--TTTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH-Hhh--Ccch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 45566667777888888888888776 321 1100 00000000000000 12346777888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 385 LLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
+|.+.|++++|++.++.. .+.| +..+|..+..++ ...|+++.|...|++.++.+|. |..+...+..+.
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~-~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 145 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN-MYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 145 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHH-HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 999999999999999886 4445 778999999999 9999999999999999999998 777766554443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0012 Score=55.81 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=81.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHhcCch
Q 038206 348 SACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNI--DEALHLVSNMPMKPDAVIWRSLLDACCKKHASV 425 (614)
Q Consensus 348 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 425 (614)
......|++++|.+.|.....-+.-.+-... . .+.+ .++..+ + .-....+..+...+ ...|++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~-~~~w~~~~r~~l-~----~~~~~a~~~la~~~-~~~g~~ 83 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL--------R-DFQFVEPFATAL-V----EDKVLAHTAKAEAE-IACGRA 83 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------T-TSTTHHHHHHHH-H----HHHHHHHHHHHHHH-HHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC--------c-chHHHHHHHHHH-H----HHHHHHHHHHHHHH-HHCCCc
Confidence 4567789999999988888653221110000 0 0000 011111 1 01245677788888 999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH-----hCCCccC
Q 038206 426 VLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT-----DKGVTKE 478 (614)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 478 (614)
+.|...++++++..|. +...|..++.+|.+.|++++|.+.|+++. +.|+.|.
T Consensus 84 ~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 84 SAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999 99999999999999999999999999874 3577764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00059 Score=54.20 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCch-------hHHH
Q 038206 379 YGCLVDLLARAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSG-------VYVL 449 (614)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ 449 (614)
+-.+...|.+.|++++|++.|++. .+.| +..+|..+-.++ .+.|+++.|+..++++++..|. +.. +|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~l~~~-~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVY-FEKGDYNKCRELCEKAIEVGRE-NREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHH-STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHH-HHcCchHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 335667788899999999999876 3344 577778787777 9999999999999999998876 433 5566
Q ss_pred HHHHHhhcCChhhHHHHHHHHHh
Q 038206 450 LSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 450 l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...+...+++++|.+.+++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 77788888999999999977543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.07 E-value=0.062 Score=47.86 Aligned_cols=90 Identities=10% Similarity=-0.082 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHH
Q 038206 99 FTWNTLIRACARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAY----LFAFSQGKQAHAHIFKRGLVSDVYINN 174 (614)
Q Consensus 99 ~~~~~li~~~~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 174 (614)
..|..+-..+.+. +++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +.....
T Consensus 3 ~~~~~lG~~~~~~-~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 3 KELVGLGAKSYKE-KDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 3444444444555 66666666666666554 22333333333332 345566666666655544 222233
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhc
Q 038206 175 SLIHFYAS----CGHLDLANKVFDNM 196 (614)
Q Consensus 175 ~li~~~~~----~g~~~~A~~~f~~m 196 (614)
.|...+.. ..+.+.|...++..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a 100 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKA 100 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhh
Confidence 33333322 23455555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.80 E-value=0.0027 Score=52.96 Aligned_cols=64 Identities=5% Similarity=-0.066 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 407 DAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 407 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
+...|..+-..+ .+.|+++.|+..+.++++..|. ++.+|..+..+|.+.|++++|...|++..+
T Consensus 76 ~~~~~~nla~~~-~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACK-LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-Hhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566666666 8899999999999999999999 999999999999999999999999998876
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.79 E-value=0.00035 Score=70.24 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=66.5
Q ss_pred cccHHHHHHHHHHhcCCHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccH-HHHHHHHHH
Q 038206 272 DVLVNNSLIDMYCKCGSLDIARQVFESMPKRDL-TSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNS-ITFVGVLSA 349 (614)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~-~t~~~ll~a 349 (614)
+...+..+...+.+.|+.+.|...+.....++. .++..+...+...|++++|...|.+. .. +.|+. .+|+.+...
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A-~~--l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHA-AQ--LVPSNGQPYNQLAIL 195 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HH--HCTTBSHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHH-HH--HCCCchHHHHHHHHH
Confidence 455667777778888888888777665443332 45667777888889999999999876 33 45655 788888888
Q ss_pred HhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 038206 350 CNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAG 390 (614)
Q Consensus 350 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (614)
+...|+..+|...|..... --+|-...+..|...|.+..
T Consensus 196 ~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHhh
Confidence 8889999999988888764 44567778888888776644
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.64 E-value=0.011 Score=49.08 Aligned_cols=62 Identities=5% Similarity=-0.083 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 410 IWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 410 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+|+.+-.++ .+.|++++|+..++++++.+|. +..+|..+..+|...|++++|...|++..+.
T Consensus 66 ~~~Nla~~~-~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCY-LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHH-HHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344455555 8899999999999999999999 9999999999999999999999999998763
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0057 Score=48.15 Aligned_cols=84 Identities=6% Similarity=0.125 Sum_probs=39.1
Q ss_pred HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCC---C-------hhHHHHHHHHHHh
Q 038206 144 ACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLER---S-------LVSWNVMIDAFVQ 213 (614)
Q Consensus 144 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~ 213 (614)
.+...|++++|...|...++.+ +.+..++..+..+|.+.|++++|...++...+- + ..+|..+...+..
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~ 91 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433 223344444444444444444444444443210 0 1234445555566
Q ss_pred cCChhHHHHHHHHhh
Q 038206 214 FGEFDSALKLFRRMQ 228 (614)
Q Consensus 214 ~g~~~~A~~~~~~m~ 228 (614)
.+++++|++.|++..
T Consensus 92 ~~~~~~A~~~~~kal 106 (128)
T d1elra_ 92 EEKYKDAIHFYNKSL 106 (128)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH
Confidence 666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00038 Score=70.03 Aligned_cols=93 Identities=9% Similarity=-0.115 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 038206 376 LEHYGCLVDLLARAGNIDEALHLVSNMPMKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVY 454 (614)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (614)
...+..+...+.+.|+.++|...++..- +++ ..++..+...+ ...++++.|...|+++.+..|+ +..+|+.|..+|
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~LG~l~-~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSC-SYICQHCLVHLGDIA-RYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp -----------------------CCHHH-HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 3444555555556666665554443320 111 12444455555 5666666666666666666666 666666666666
Q ss_pred hhcCChhhHHHHHHHHH
Q 038206 455 ASARRWNDVGLVRKLMT 471 (614)
Q Consensus 455 ~~~g~~~~a~~~~~~m~ 471 (614)
...|+..+|...+.+..
T Consensus 197 ~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.46 E-value=0.014 Score=48.80 Aligned_cols=56 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038206 275 VNNSLIDMYCKCGSLDIARQVFESMP--K-RDLTSWNSIILGFALHGRAEAALKYFDRL 330 (614)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (614)
.+..+...+.+.|++++|...++.+. . -+...|..++.+|.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34445555555566666655555543 2 24455555555555555555555555554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.46 E-value=0.0083 Score=49.05 Aligned_cols=89 Identities=15% Similarity=-0.027 Sum_probs=61.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC-----CC
Q 038206 383 VDLLARAGNIDEALHLVSNM----PMKPD----------AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG-----IC 443 (614)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~ 443 (614)
...+.+.|++++|++.|++. +..|+ ...|+.+-.++ ...|+++.|...+++.++..+. ++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~-~~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL-AGLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHH-HHcCccchhhHhhhhhhhccccccccccc
Confidence 33444556666666666554 21121 35677777777 8888999999888888865321 11
Q ss_pred -----chhHHHHHHHHhhcCChhhHHHHHHHHHh
Q 038206 444 -----SGVYVLLSRVYASARRWNDVGLVRKLMTD 472 (614)
Q Consensus 444 -----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 472 (614)
...|..+..+|...|++++|...|++..+
T Consensus 95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567789999999999999999998765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.38 E-value=0.0031 Score=51.01 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhc-----------CchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcC
Q 038206 392 IDEALHLVSNM-PMKP-DAVIWRSLLDACCKKH-----------ASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASAR 458 (614)
Q Consensus 392 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (614)
+++|++.|++. .+.| +..+|..+-.++ ... ++++.|.+.|+++++..|. +...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y-~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~-~~~~~~~L~~~----- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAY-TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD-NTHYLKSLEMT----- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHH-HHcccchhhHHHHHHhHHHhhhhhhcccccCCC-HHHHHHHHHHH-----
Confidence 34555555544 2333 344555555544 332 3468899999999999988 66555444333
Q ss_pred ChhhHHHHHHHHHhCCC
Q 038206 459 RWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 459 ~~~~a~~~~~~m~~~g~ 475 (614)
..|.+++.+..+.|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 456666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.16 E-value=0.0031 Score=51.06 Aligned_cols=83 Identities=10% Similarity=-0.035 Sum_probs=55.8
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH----------hcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 038206 388 RAGNIDEALHLVSNM-PMKP-DAVIWRSLLDACCK----------KHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYA 455 (614)
Q Consensus 388 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (614)
+.+.+++|++.|+.. ...| +..+|..+-.++ . ..+.+++|+..|+++++.+|+ +..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l-~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVL-LELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 344455555555554 2233 333343333333 2 234568999999999999999 9999999999998
Q ss_pred hcCC-----------hhhHHHHHHHHHh
Q 038206 456 SARR-----------WNDVGLVRKLMTD 472 (614)
Q Consensus 456 ~~g~-----------~~~a~~~~~~m~~ 472 (614)
..|+ +++|.+.|++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 7664 5778888877665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.93 E-value=0.0025 Score=57.48 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038206 353 RGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLVSNM 402 (614)
Q Consensus 353 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (614)
.|++++|...++..++ --+-+...+..+...|+..|++++|.+.++..
T Consensus 9 ~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 9 EGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp TTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555555554443 22224444455555555555555555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.80 E-value=0.034 Score=40.72 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHH
Q 038206 380 GCLVDLLARAGNIDEALHLVSNM----P----MKPD-AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLL 450 (614)
Q Consensus 380 ~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (614)
--+...+.+.|++++|...|++. + ..++ ..++..|-.++ .+.|++++|...++++++..|+ +..++..+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~-~~~g~~~~A~~~y~~aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAV-YQQGDLDKALLLTKKLLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHH-HhcCChHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 34556666777777776666654 1 1122 45677777777 8888999999999999998888 77666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.79 E-value=0.095 Score=42.31 Aligned_cols=64 Identities=22% Similarity=0.069 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCC
Q 038206 377 EHYGCLVDLLARAGNIDEALHLVSNM--------PMKPD-----AVIWRSLLDACCKKHASVVLSEEVAKQVIESEGG 441 (614)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 441 (614)
..|+.+..+|.+.|++++|.+.+++. ...++ ...++.+-.++ ...|++++|...|++++++.+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~-~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALAL-DGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHhhHH
Confidence 34555666666666666666555443 11222 22455666777 8889999999999998877543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.63 E-value=0.014 Score=52.43 Aligned_cols=118 Identities=12% Similarity=0.011 Sum_probs=75.8
Q ss_pred HcCCCCchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 038206 109 ARSVDAKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDL 188 (614)
Q Consensus 109 ~~~~~~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 188 (614)
.+. |++++|+..|++.++.. + -|...+..+...++..|++++|.+.++...+... .+...+..+...+...+..++
T Consensus 7 L~~-G~l~eAl~~l~~al~~~-P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSE-GQLQQALELLIEAIKAS-P-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTT-TCHHHHHHHHHHHHHTC-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccHH
Confidence 345 88999999999988877 2 3567788888888999999999999998887642 233444444444443333333
Q ss_pred HHHHHhhc-C--CC-ChhHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 038206 189 ANKVFDNM-L--ER-SLVSWNVMIDAFVQFGEFDSALKLFRRMQIL 230 (614)
Q Consensus 189 A~~~f~~m-~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 230 (614)
+..-...- . .+ +...+......+.+.|+.++|.+++.+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 32221111 1 11 1223344456677788999998888887654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.45 E-value=0.25 Score=37.16 Aligned_cols=140 Identities=10% Similarity=0.068 Sum_probs=88.8
Q ss_pred HhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038206 315 ALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDE 394 (614)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (614)
...|..++..++..+. .. ..+..-|+.++--....-+-+...++++.+-+-+.+. .|+++..
T Consensus 13 ildG~ve~Gveii~k~-~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEI-TK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHTTCHHHHHHHHHHH-HH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHhhhHHhHHHHHHHH-cc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 3456777777777665 22 1233445555554455555555555555553322222 2344444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHHhCC
Q 038206 395 ALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIESEGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKG 474 (614)
Q Consensus 395 A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 474 (614)
...-+-.+. .+..-...-+... .+.|.-+.-.++++.+.+.+ +|++.....+.++|.+-|...++.+++.+.=++|
T Consensus 75 vv~C~~~~n--~~se~vdlALd~l-v~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDIL-VIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHH-HHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--chHHHHHHHHHHH-HHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 443333332 2333445556677 88888899999999877744 4578888999999999999999999999998888
Q ss_pred Cc
Q 038206 475 VT 476 (614)
Q Consensus 475 ~~ 476 (614)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 75
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.1 Score=37.97 Aligned_cols=62 Identities=16% Similarity=0.011 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhcCC-----CC-chhHHHHHHHHhhcCChhhHHHHHHHHHhC
Q 038206 411 WRSLLDACCKKHASVVLSEEVAKQVIESEGG-----IC-SGVYVLLSRVYASARRWNDVGLVRKLMTDK 473 (614)
Q Consensus 411 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 473 (614)
+-.+-..+ .+.|+++.|...|+++++..+. ++ ..++..|..+|.+.|++++|...+++..+.
T Consensus 8 c~~lG~~~-~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34455666 7889999999999999887543 11 356888999999999999999999998763
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=89.55 E-value=2.6 Score=32.04 Aligned_cols=106 Identities=11% Similarity=-0.012 Sum_probs=59.3
Q ss_pred CchHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHH
Q 038206 114 AKPQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYAS----CGHLDLA 189 (614)
Q Consensus 114 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 189 (614)
++++|+++|++..+.|.. .....+. .....+.++|.+.+....+.| ++.....|-.+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~----~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM----FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT----THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh----hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 566777777777766522 2222222 233456677777777777665 34444455555543 3456777
Q ss_pred HHHHhhcCC-CChhHHHHHHHHHHh----cCChhHHHHHHHHhh
Q 038206 190 NKVFDNMLE-RSLVSWNVMIDAFVQ----FGEFDSALKLFRRMQ 228 (614)
Q Consensus 190 ~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 228 (614)
.+.|+...+ .+..+...|...|.. ..+.++|.++|++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 777766533 244455555555544 345666666666543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=89.22 E-value=3.3 Score=30.93 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhhCchhHHHHHHHHHHHh
Q 038206 200 SLVSWNVMIDAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGLATLSLGMWAHAYILRH 264 (614)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 264 (614)
+....+..++...+.|+-++-.++++.+.+.-+|++.....+..|+.+.|+..++..++.++-+.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 33445666777788888888888888766565666777777777788888777777777666665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.37 E-value=12 Score=35.17 Aligned_cols=373 Identities=10% Similarity=-0.010 Sum_probs=193.5
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-CChhHHHHHHhcCCCCChhhHHHHHHHHHcCCCCchHHHHHHHHHHHc
Q 038206 50 KQIHAQALRTALPQQHKTLLIYSRIIHFASF-ADLDYAFRVFYQIENPNSFTWNTLIRACARSVDAKPQAIVLFQRMIEQ 128 (614)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~~~~li~~~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~~~~~~~A~~~~~~m~~~ 128 (614)
.++...+.+..-.|.. . .+-...+..+.+ +++......+..-+ +++..-.....+.... |+.++|...++..-..
T Consensus 56 ~~i~~Fl~~~p~~P~~-~-~lr~~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~-g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPA-R-TLQSRFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNT-GQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHH-H-HHHHHHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhH-H-HHHHHHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhc
Confidence 4565655554322111 1 222333444455 77777666654332 2444444566777788 9999999888888777
Q ss_pred CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 038206 129 GNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMI 208 (614)
Q Consensus 129 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 208 (614)
|.. ....... ++..+.+.|. .+...+-.-+......|+...|..+...++..........+
T Consensus 132 ~~~--~p~~c~~----------------l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~ 192 (450)
T d1qsaa1 132 GKS--QPNACDK----------------LFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (450)
T ss_dssp SSC--CCTHHHH----------------HHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred CCC--CchHHHH----------------HHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHH
Confidence 633 2222333 3444444442 23333334455556678888888888877655544555555
Q ss_pred HHHHhcCChhHHHHHHHHhhhccCCChhhHHHHHHHHHhh--CchhHHHHHHHHHHHhccCCCCccc--cHHHHHHHHHH
Q 038206 209 DAFVQFGEFDSALKLFRRMQILFEPDGYTFQSITSACAGL--ATLSLGMWAHAYILRHCDHSLVTDV--LVNNSLIDMYC 284 (614)
Q Consensus 209 ~~~~~~g~~~~A~~~~~~m~~~~~pd~~t~~~ll~a~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~li~~y~ 284 (614)
....+ ...+...... ..++......+..+..+. .+.+.+...+....... .+.++. .....+.....
T Consensus 193 ~l~~~---p~~~~~~~~~----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~ 263 (450)
T d1qsaa1 193 SLANN---PNTVLTFART----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLM 263 (450)
T ss_dssp HHHHC---GGGHHHHHHH----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSC
T ss_pred HHHhC---hHhHHHHHhc----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc--cccHHHHHHHHHHHHHHHH
Confidence 54432 2333222221 223333333333333332 35555666665555430 222221 11111222223
Q ss_pred hcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHH
Q 038206 285 KCGSLDIARQVFESMP--KRDLTSWNSIILGFALHGRAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDY 362 (614)
Q Consensus 285 ~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 362 (614)
..+..+.|...++... ..+.....-.+......+++..+...+..| ...... ...-.--+..+....|+.+.|..+
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l-~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARL-PMEAKE-KDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CTTGGG-SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhc-Cccccc-HHHHHHHHHHHHHHcCChhhHHHH
Confidence 3455566666554433 223333333444455678888888888877 332222 222223455677888899999988
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCH-HH---HHHHHHHHHHhcCchHHHHHHHHHHHH
Q 038206 363 FDVMINEYNITPVLEHYGCLVDLLARAGNIDEALHLV-SNMPMKPDA-VI---WRSLLDACCKKHASVVLSEEVAKQVIE 437 (614)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~-~~---~~~ll~~~~~~~~~~~~a~~~~~~~~~ 437 (614)
|..... .++ -|.-|.. .+.|..- .+- ...+..++. .. -..-+..+ ...|....|...+..+.+
T Consensus 342 ~~~~a~----~~~--fYG~LAa--~~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L-~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 342 LHQLMQ----QRG--FYPMVAA--QRIGEEY---ELKIDKAPQNVDSALTQGPEMARVREL-MYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHHHHT----SCS--HHHHHHH--HHTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred HHHHhc----CCC--hHHHHHH--HHcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHH-HHcCCchHHHHHHHHHHh
Confidence 888743 233 3443321 1122100 000 000111111 11 01123344 667889999998888765
Q ss_pred hcCCCCchhHHHHHHHHhhcCChhhHHHHHHHHH
Q 038206 438 SEGGICSGVYVLLSRVYASARRWNDVGLVRKLMT 471 (614)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 471 (614)
.. +......+.....+.|.++.|+....+..
T Consensus 410 ~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 410 SK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 32 45677788888889999999988876653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=83.77 E-value=7.1 Score=29.36 Aligned_cols=49 Identities=4% Similarity=-0.096 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh----cCChhhHHHHHHHHHhCCC
Q 038206 424 SVVLSEEVAKQVIESEGGICSGVYVLLSRVYAS----ARRWNDVGLVRKLMTDKGV 475 (614)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 475 (614)
+.++|.+.|++..+.+ ++.....|..+|.. ..+.++|.+.+++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 3445555555544443 22334444444433 2345555555555544443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.06 E-value=3.8 Score=28.93 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 038206 319 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVD 384 (614)
Q Consensus 319 ~~~~A~~l~~~m~~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 384 (614)
+.-++.+-++.+ -...+.|+.....+.|.||.+.+++..|.++|+.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l-~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 555677777777 67778899999999999999999999999999988654 3344556766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=81.26 E-value=22 Score=33.19 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHhhhcCCCccHHHH-H-HHHHHHhccCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038206 318 GRAEAALKYFDRLVVEESFSPNSITF-V-GVLSACNHRGMVSEGRDYFDVMINEYNITPVLEHYGCLVDLLARAGNIDEA 395 (614)
Q Consensus 318 g~~~~A~~l~~~m~~~~g~~p~~~t~-~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (614)
.+.+.|..++..........++.... . .+.......+..+.+..++...... ..+......++....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 35566666666552222233322111 1 1112223344555565555554331 22333334445555566677777
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 038206 396 LHLVSNMPMKPD--AVIWRSLLDACCKKHASVVLSEEVAKQVI 436 (614)
Q Consensus 396 ~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 436 (614)
...|+.|+..|. ..-..=+-.+. ...|+.+.|...|..+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~-~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLL-LERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcccccHHHHHHHHHHHH-HHcCChhhHHHHHHHHh
Confidence 777776643321 11122334455 56667777777776664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.19 E-value=3 Score=29.47 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038206 116 PQAIVLFQRMIEQGNVLPDKHTFPFALKACAYLFAFSQGKQAHAHIFKRGLVSDVYINNSLI 177 (614)
Q Consensus 116 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 177 (614)
-++..-++.+...+.. |++....+.|+||.+.+|+..|.++++.+.... .++..+|..++
T Consensus 23 we~rrgmN~l~~~DlV-PeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 3555556666666667 777778888888888888888888777666432 23344555444
|